Citrus Sinensis ID: 010471

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510
Protein Sequence
MATSPHTNLHSVTAFYPTHTKPLPIFTVKIPHFKSKHQFQIISNNKKFKRVSFPITNSAFTDSGVPNNESNDNIIKFFDYFQDLVAFIRQVFPGGSWWNLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccccccccccccccEEEEEcEEEEcccccccccccccEEEEccccEEEEEccccccHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEcEEEEccccccccccEEEcccccccccccEEEEEcccccccccEEEEccEEEEccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEEEccccccccccEEEEEEEEccccEEEEEccccccHHHHHHHHcccccccEEEEc
Coil and Loop (DISEMBL)
matsphtnlhsvtafypthtkplpiftvkiphfkskhqfqiisnnkkfkrvsfpitnsaftdsgvpnnesndniIKFFDYFQDLVAFIRQvfpggswwnlsdgqeaenptakpITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLfqdvyffdteavggltsRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLtlswpltlSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSimigqvspeQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDllpsnqflsEGVKLQRLMGHVQFVNisfhypsrptvpilnhvcLTIEANEVVAIVGLSGSGKSTFVNLLLRLyepsdgqvc
Flexible Loop (DISEMBL)
matsphtnlhsvtafypthtkPLPIFTVKIPHFKSKHQFQIISNNKKFKRVSFPItnsaftdsgvpnnESNDNIIKFFDYFQDLVAFIRQVFPGGSWWNLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYgteekelgrykiWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRlyepsdgqvc
Low Complexity Region (SEG)
MATSPHTNLHSVTAFYPTHTKPLPIFTVKIPHFKSKHQFQIISNNKKFKRVSFPITNSAFTDSGVPNNESNDNIIKFFDYFQDLVAFIRQVFPGGSWWNLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWivlvavaslivaavsEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC
Disordered region (IsUnstruct)
*********HSVTAFYPTHTKPLPIFTVKIPHFKSKHQFQIISNNKKFKRVSFPITNSAFTD********NDNIIKFFDYFQDLVAFIRQVFPGGSWWNLSDGQ***NPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY********
Disordered Region (DISOPRED)
************************IFTVKIPH*****************************************************************************************RMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLL**************LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV*
Disordered Region (DISEMBL)
********LHSVTAFYPTHTKPLPIFTVKIPHFKSKHQFQIISNNKKFKRVSFPITNSAFTDSGVPNNESNDNIIKFFDYFQDLVAFIRQVFPGGSWWNLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC
Disordered Region (DISPRO)
*****HTNLHSVTAFYPTHTKPLPIFTVKIPHFKSKHQFQIISNNKKFKRVSFPITNSAFTDSGVPNNESNDNIIKFFDYFQDLVAFIRQVFP*******************PITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATSPHTNLHSVTAFYPTHTKPLPIFTVKIPHFKSKHQFQIISNNKKFKRVSFPITNSAFTDSGVPNNESNDNIIKFFDYFQDLVAFIRQVFPGGSWWNLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	510	2.2.26 [Sep-21-2011]
Q8RY46	700	ABC transporter B family	yes	no	0.919	0.67	0.554	1e-156
Q9JJ59	762	ATP-binding cassette sub-	yes	no	0.796	0.532	0.310	1e-48
Q9QYJ4	762	ATP-binding cassette sub-	yes	no	0.796	0.532	0.310	2e-48
Q9NP78	766	ATP-binding cassette sub-	yes	no	0.8	0.532	0.314	4e-48
Q03519	686	Antigen peptide transport	no	no	0.750	0.558	0.309	8e-42
P36372	703	Antigen peptide transport	no	no	0.652	0.473	0.332	2e-41
Q54BU4	909	ABC transporter B family	yes	no	0.764	0.429	0.275	3e-40
Q9FNU2	641	ABC transporter B family	no	no	0.807	0.642	0.28	4e-39
P36371	702	Antigen peptide transport	no	no	0.733	0.532	0.305	4e-38
Q9NRK6	738	ATP-binding cassette sub-	no	no	0.598	0.413	0.317	1e-37

>sp|Q8RY46|AB26B_ARATH ABC transporter B family member 26, chloroplastic OS=Arabidopsis thaliana GN=ABCB26 PE=1 SV=1

 Score =  550 bits (1417), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 261/471 (55%), Positives = 348/471 (73%), Gaps = 2/471 (0%)

Query: 39  FQIISNNKKFKRVSFPITNSAFTDSGVPNNESNDNIIKFFDYFQDLVAFIRQVFPGGSWW 98
            Q  + N +   ++    N A  ++        DN+    +  +  + F+R + PGGSWW
Sbjct: 46  LQSSTRNYRLPSINCSTVNGAVAETAEYYEGEGDNV-SLAEKIRQCIDFLRTILPGGSWW 104

Query: 99  NLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEA 158
           + SD  +     AKP+TVW ALSRMW L+  D+W++  A ++LIVAA+SEIT+P  L  +
Sbjct: 105 SFSDEVDGRF-IAKPVTVWRALSRMWELVAEDRWVIFAAFSTLIVAALSEITIPHFLTAS 163

Query: 159 VFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQD 218
           +FSAQ  +  VFH++ + LV LCVTSGI SG+R   F IAN++LVKR+RETLYS LLFQD
Sbjct: 164 IFSAQSGDIAVFHRNVKLLVTLCVTSGICSGIRGCFFGIANMILVKRMRETLYSTLLFQD 223

Query: 219 VYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSAL 278
           + FFD++ VG LTSRL +DCQ++S VIGND+NMI RN LQG GA I LL LSWPL L  L
Sbjct: 224 ISFFDSQTVGDLTSRLGSDCQQVSRVIGNDLNMIFRNVLQGTGALIYLLILSWPLGLCTL 283

Query: 279 LICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKI 338
           +IC  L+ ++ VYG YQK+ + L QE  A AN VAQET  +MRTVRVYGTE++E  RY  
Sbjct: 284 VICCILAAVMFVYGMYQKKTAKLIQEITASANEVAQETYSLMRTVRVYGTEKQEFKRYNH 343

Query: 339 WLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCE 398
           WL++LA I +R+S AYG+WN SF TLY +TQ++AVL+GG+SI+ GQ++ EQLTK++LY E
Sbjct: 344 WLQRLADISLRQSAAYGIWNWSFNTLYHATQIIAVLVGGLSILAGQITAEQLTKFLLYSE 403

Query: 399 WLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFH 458
           WLIYATW + DNLSSL+QS+GA+EKVFQ++DL PS+QF+S+G +LQRL GH++FV++SF 
Sbjct: 404 WLIYATWWVGDNLSSLMQSVGASEKVFQMMDLKPSDQFISKGTRLQRLTGHIEFVDVSFS 463

Query: 459 YPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           YPSR  V ++ +V +++   EVVAIVGLSGSGKST VNLLL+LYEP+ GQ+
Sbjct: 464 YPSRDEVAVVQNVNISVHPGEVVAIVGLSGSGKSTLVNLLLQLYEPTSGQI 514

Arabidopsis thaliana (taxid: 3702)

>sp|Q9JJ59|ABCB9_MOUSE ATP-binding cassette sub-family B member 9 OS=Mus musculus GN=Abcb9 PE=2 SV=1

 Score =  194 bits (493), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 131/422 (31%), Positives = 223/422 (52%), Gaps = 16/422 (3%)

Query: 93  PGGSWWNLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMP 152
           PG   ++   G  AE  +         L ++ +    D   ++ A   LIVAA+ E  +P
Sbjct: 149 PGNEGFHGEGGAPAEQASGA------TLQKLLSYTKPDVAFLVAASFFLIVAALGETFLP 202

Query: 153 RILAEAVFSAQREEAM-VFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLY 211
                A+ S   +++M  F  +   + LL + S + +G+R G F++    L  RLR  L+
Sbjct: 203 YYTGRAIDSIVIQKSMDQFTTAVVVVCLLAIGSSLAAGIRGGIFTLVFARLNIRLRNCLF 262

Query: 212 SALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSW 271
            +L+ Q+  FFD    G L SRLT+D   +S+++  +IN+ LRN+++  G  + + +LSW
Sbjct: 263 RSLVSQETSFFDENRTGDLISRLTSDTTMVSDLVSQNINIFLRNTVKVTGVVVFMFSLSW 322

Query: 272 PLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEK 331
            L+L   +    + ++ ++YG+Y KR S   Q   A A+  A+ET+  M+TVR +  EE+
Sbjct: 323 QLSLVTFMGFPIIMMVSNIYGKYYKRLSKEVQSALARASTTAEETISAMKTVRSFANEEE 382

Query: 332 ELGRYKIWLEKLAFIRIRESMAYG--LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQ 389
           E   +   L+++  +  +E+ AY   +W      L    QV  +  GG  ++ GQ+S   
Sbjct: 383 EAEVFLRKLQQVYKLNRKEAAAYMSYVWGSGLTLLV--VQVSILYYGGHLVISGQMSSGN 440

Query: 390 LTKYVLYCEWLIYATWRMVDNL-SSLLQSIGATEKVFQLIDLLPSNQFLSEG-VKLQRLM 447
           L  +++Y E+++      V ++ S L+Q +GA EKVF+ ID  P+   + +G +    L 
Sbjct: 441 LIAFIIY-EFVLGDCMESVGSVYSGLMQGVGAAEKVFEFIDRQPT--MVHDGSLAPDHLE 497

Query: 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
           G V F N++F Y +RP   +L +V  ++   +V A+VG SGSGKS+ VN+L   Y    G
Sbjct: 498 GRVDFENVTFTYRTRPHTQVLQNVSFSLSPGKVTALVGPSGSGKSSCVNILENFYPLQGG 557

Query: 508 QV 509
           +V
Sbjct: 558 RV 559

ATP-dependent low-affinity peptide transporter which translocates a broad spectrum of peptides from the cytosol to the lysosomal lumen. Displays a broad peptide length specificity from 6-mer up to at least 59-mer peptides with an optimum of 23-mers. Favors positively charged, aromatic or hydrophobic residues in the N- and C-terminal positions whereas negatively charged residues as well as asparagine and methionine are not favored.

Mus musculus (taxid: 10090)

>sp|Q9QYJ4|ABCB9_RAT ATP-binding cassette sub-family B member 9 OS=Rattus norvegicus GN=Abcb9 PE=1 SV=1

 Score =  193 bits (491), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 131/422 (31%), Positives = 223/422 (52%), Gaps = 16/422 (3%)

Query: 93  PGGSWWNLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMP 152
           PG   ++   G  AE  +         L ++ +    D   ++ A   LIVAA+ E  +P
Sbjct: 149 PGNEGFHGEGGAPAEQASGA------TLQKLLSYTKPDVAFLVAASFFLIVAALGETFLP 202

Query: 153 RILAEAVFSAQREEAM-VFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLY 211
                A+ S   +++M  F  +   + LL + S + +G+R G F++    L  RLR  L+
Sbjct: 203 YYTGRAIDSIVIQKSMDQFTTAVVVVCLLAIGSSLAAGIRGGIFTLVFARLNIRLRNCLF 262

Query: 212 SALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSW 271
            +L+ Q+  FFD    G L SRLT+D   +S+++  +IN+ LRN+++  G  + + +LSW
Sbjct: 263 RSLVSQETSFFDENRTGDLISRLTSDTTMVSDLVSQNINIFLRNTVKVTGVVVFMFSLSW 322

Query: 272 PLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEK 331
            L+L   +    + ++ ++YG+Y KR S   Q   A A+  A+ET+  M+TVR +  EE+
Sbjct: 323 QLSLVTFMGFPIIMMVSNIYGKYYKRLSKEVQSALARASTTAEETISAMKTVRSFANEEE 382

Query: 332 ELGRYKIWLEKLAFIRIRESMAYG--LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQ 389
           E   +   L+++  +  +E+ AY   +W      L    QV  +  GG  ++ GQ+S   
Sbjct: 383 EAEVFLRKLQQVYKLNRKEAAAYMSYVWGSGLTLLV--VQVSILYYGGHLVISGQMSSGN 440

Query: 390 LTKYVLYCEWLIYATWRMVDNL-SSLLQSIGATEKVFQLIDLLPSNQFLSEG-VKLQRLM 447
           L  +++Y E+++      V ++ S L+Q +GA EKVF+ ID  P+   + +G +    L 
Sbjct: 441 LIAFIIY-EFVLGDCMESVGSVYSGLMQGVGAAEKVFEFIDRQPT--MVHDGRLAPDHLE 497

Query: 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
           G V F N++F Y +RP   +L +V  ++   +V A+VG SGSGKS+ VN+L   Y    G
Sbjct: 498 GRVDFENVTFTYRTRPHTQVLQNVSFSLSPGKVTALVGPSGSGKSSCVNILENFYPLQGG 557

Query: 508 QV 509
           +V
Sbjct: 558 RV 559

ATP-dependent low-affinity peptide transporter which translocates a broad spectrum of peptides from the cytosol to the lysosomal lumen. Displays a broad peptide length specificity from 6-mer up to at least 59-mer peptides with an optimum of 23-mers. Favors positively charged, aromatic or hydrophobic residues in the N- and C-terminal positions whereas negatively charged residues as well as asparagine and methionine are not favored.

Rattus norvegicus (taxid: 10116)

>sp|Q9NP78|ABCB9_HUMAN ATP-binding cassette sub-family B member 9 OS=Homo sapiens GN=ABCB9 PE=1 SV=1

 Score =  192 bits (489), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 137/435 (31%), Positives = 227/435 (52%), Gaps = 27/435 (6%)

Query: 97  WWNLSD---GQEAENPTA-----------KPITVWIALSRMWNLIGRDKWIVLVAVAS-- 140
           WW LS    G +A  P A           +P     + + +  L+   K  V   VA+  
Sbjct: 134 WWLLSTVRPGTQALEPGAATEAEGFPGSGRPPPEQASGATLQKLLSYTKPDVAFLVAASF 193

Query: 141 -LIVAAVSEITMPRILAEAVFSAQREEAM-VFHKSSRFLVLLCVTSGIFSGLRSGCFSIA 198
            LIVAA+ E  +P     A+     +++M  F  +   + LL + S   +G+R G F++ 
Sbjct: 194 FLIVAALGETFLPYYTGRAIDGIVIQKSMDQFSTAVVIVCLLAIGSSFAAGIRGGIFTLI 253

Query: 199 NIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQ 258
              L  RLR  L+ +L+ Q+  FFD    G L SRLT+D   +S+++  +IN+ LRN+++
Sbjct: 254 FARLNIRLRNCLFRSLVSQETSFFDENRTGDLISRLTSDTTMVSDLVSQNINVFLRNTVK 313

Query: 259 GAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLC 318
             G  + + +LSW L+L   +    + ++ ++YG+Y KR S   Q   A A+N A+ET+ 
Sbjct: 314 VTGVVVFMFSLSWQLSLVTFMGFPIIMMVSNIYGKYYKRLSKEVQNALARASNTAEETIS 373

Query: 319 MMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG--LWNMSFITLYRSTQVMAVLLG 376
            M+TVR +  EE+E   Y   L+++  +  +E+ AY   +W      L    QV  +  G
Sbjct: 374 AMKTVRSFANEEEEAEVYLRKLQQVYKLNRKEAAAYMYYVWGSGLTLLV--VQVSILYYG 431

Query: 377 GMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNL-SSLLQSIGATEKVFQLIDLLPSNQ 435
           G  ++ GQ++   L  +++Y E+++      V ++ S L+Q +GA EKVF+ ID  P+  
Sbjct: 432 GHLVISGQMTSGNLIAFIIY-EFVLGDCMESVGSVYSGLMQGVGAAEKVFEFIDRQPT-- 488

Query: 436 FLSEG-VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTF 494
            + +G +    L G V F N++F Y +RP   +L +V  ++   +V A+VG SGSGKS+ 
Sbjct: 489 MVHDGSLAPDHLEGRVDFENVTFTYRTRPHTQVLQNVSFSLSPGKVTALVGPSGSGKSSC 548

Query: 495 VNLLLRLYEPSDGQV 509
           VN+L   Y    G+V
Sbjct: 549 VNILENFYPLEGGRV 563

ATP-dependent low-affinity peptide transporter which translocates a broad spectrum of peptides from the cytosol to the lysosomal lumen. Displays a broad peptide length specificity from 6-mer up to at least 59-mer peptides with an optimum of 23-mers. Favors positively charged, aromatic or hydrophobic residues in the N- and C-terminal positions whereas negatively charged residues as well as asparagine and methionine are not favored.

Homo sapiens (taxid: 9606)

>sp|Q03519|TAP2_HUMAN Antigen peptide transporter 2 OS=Homo sapiens GN=TAP2 PE=1 SV=1

 Score =  172 bits (435), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 122/394 (30%), Positives = 201/394 (51%), Gaps = 11/394 (2%)

Query: 123 MWNLIGRDKWIVLVAVAS---LIVAAVSEITMPRILAEAVFSAQRE-EAMVFHKSSRFLV 178
           MW L+   +  + + VA+   L++A + E  +P      +     + +   F  +  F+ 
Sbjct: 138 MWRLLKLSRPDLPLLVAAFFFLVLAVLGETLIPHYSGRVIDILGGDFDPHAFASAIFFMC 197

Query: 179 LLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADC 238
           L    S + +G R GCF+     +  R+RE L+S+LL QD+ FF     G L SRL++D 
Sbjct: 198 LFSFGSSLSAGCRGGCFTYTMSRINLRIREQLFSSLLRQDLGFFQETKTGELNSRLSSDT 257

Query: 239 QRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRA 298
             +SN +  + N++LR+ ++  G +  +L++S  LTL +LL   F      VY    +  
Sbjct: 258 TLMSNWLPLNANVLLRSLVKVVGLYGFMLSISPRLTLLSLLHMPFTIAAEKVYNTRHQEV 317

Query: 299 SVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWN 358
               Q+  A A  V +E +  ++TVR +G EE E+ RYK  LE+   +  R  +   L+ 
Sbjct: 318 LREIQDAVARAGQVVREAVGGLQTVRSFGAEEHEVCRYKEALEQCRQLYWRRDLERALYL 377

Query: 359 MSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSI 418
           +    L+   Q++ +  G   +  G+++   L  +++Y E +      +V     +L ++
Sbjct: 378 LVRRVLHLGVQMLMLSCGLQQMQDGELTQGSLLSFMIYQESVGSYVQTLVYIYGDMLSNV 437

Query: 419 GATEKVFQLIDL---LPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTI 475
           GA EKVF  +D    LPS   L+       L G V+F ++SF YP+RP  P+L  +  T+
Sbjct: 438 GAAEKVFSYMDRQPNLPSPGTLAPTT----LQGVVKFQDVSFAYPNRPDRPVLKGLTFTL 493

Query: 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
              EV A+VG +GSGKST   LL  LY+P+ GQV
Sbjct: 494 RPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQV 527

Involved in the transport of antigens from the cytoplasm to the endoplasmic reticulum for association with MHC class I molecules. Also acts as a molecular scaffold for the final stage of MHC class I folding, namely the binding of peptide. Nascent MHC class I molecules associate with TAP via tapasin. Inhibited by the covalent attachment of herpes simplex virus ICP47 protein, which blocks the peptide-binding site of TAP. Inhibited by human cytomegalovirus US6 glycoprotein, which binds to the lumenal side of the TAP complex and inhibits peptide translocation by specifically blocking ATP-binding to TAP1 and prevents the conformational rearrangement of TAP induced by peptide binding. Inhibited by human adenovirus E3-19K glycoprotein, which binds the TAP complex and acts as a tapasin inhibitor, preventing MHC class I/TAP association.

Homo sapiens (taxid: 9606)

>sp|P36372|TAP2_RAT Antigen peptide transporter 2 OS=Rattus norvegicus GN=Tap2 PE=2 SV=1

 Score =  170 bits (431), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/334 (33%), Positives = 176/334 (52%), Gaps = 1/334 (0%)

Query: 176 FLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLT 235
           F+ L  V S + +G R G F  A   +  R+RE L+S+LL QD+ FF     G L SRL+
Sbjct: 195 FMCLFSVGSSLSAGCRGGSFLFAESRINLRIREQLFSSLLRQDLAFFQETKTGELNSRLS 254

Query: 236 ADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQ 295
           +D   +S  +  + N++LR+ ++  G +  +L +S  LT  +LL          VY    
Sbjct: 255 SDTSLMSQWLSLNANILLRSLVKVVGLYYFMLQVSPRLTFLSLLDLPLTIAAEKVYNPRH 314

Query: 296 KRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG 355
           +      Q+  A A  V +E +  ++TVR +G EE+E+ RYK  LE+   +  R  +   
Sbjct: 315 QAVLKEIQDAVAKAGQVVREAVGGLQTVRSFGAEEQEVRRYKEALERCRQLWWRRDLEKS 374

Query: 356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLL 415
           L+ +    +    QV+ + +G   I+ G+V+   L  ++LY E + +    +V     +L
Sbjct: 375 LYLVIQRVMALGMQVLILNVGVQQILAGEVTRGGLLSFLLYQEEVGHHVQNLVYMYGDML 434

Query: 416 QSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTI 475
            ++GA EKVF  +D  P N      +   RL G V+F ++SF YPSRP  P+L  +  T+
Sbjct: 435 SNVGAAEKVFSYLDRRP-NLPNPGTLAPPRLEGRVEFQDVSFSYPSRPEKPVLQGLTFTL 493

Query: 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
              +V A+VG +GSGKST   LL  LY+P+ GQ+
Sbjct: 494 HPGKVTALVGPNGSGKSTVAALLQNLYQPTGGQL 527

Involved in the transport of antigens from the cytoplasm to the endoplasmic reticulum for association with MHC class I molecules. Also acts as a molecular scaffold for the final stage of MHC class I folding, namely the binding of peptide. Nascent MHC class I molecules associate with TAP via tapasin.

Rattus norvegicus (taxid: 10116)

>sp|Q54BU4|ABCB1_DICDI ABC transporter B family member 1 OS=Dictyostelium discoideum GN=abcB1 PE=3 SV=1

 Score =  166 bits (421), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 207/392 (52%), Gaps = 2/392 (0%)

Query: 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAV-FSAQREEAMVFHKSSRFLV 178
           L R+  L   +  I+L A+ +L+ ++++ + MP      V   A        + S+  LV
Sbjct: 336 LKRLIQLSRPELPIILAAMVALVFSSLTSLAMPYFFGSIVQVVATTHSFNNLNSSTLALV 395

Query: 179 LLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADC 238
           ++ V   I + +RS  F +A    V R+R  L+S+++ Q++ +FD    G L SRL++D 
Sbjct: 396 VIFVIGSISTLVRSWLFYLAGQKFVARIRRNLFSSIVNQEIGYFDQCRTGELLSRLSSDS 455

Query: 239 QRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRA 298
           Q + N +  +I+M+ R ++Q  G+ I L   +W LTL  L I   L+I   VYG+  K+ 
Sbjct: 456 QVIQNSVTVNISMLFRYTIQIIGSVILLFITNWRLTLLMLGIVPVLAISTVVYGKKIKQL 515

Query: 299 SVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWN 358
               Q+  A ++   +E +  +RTVR +  E+K +  Y   +     I    ++A G+++
Sbjct: 516 GKQFQDELAKSSTTGEEVISNIRTVRSFSKEQKFIDLYSKDINGSYLIGKSLAVATGVFS 575

Query: 359 MSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSI 418
                + +   V+ V +G   ++ G +S   LT ++LY   L  +   +   ++  L++I
Sbjct: 576 GIVFLVAQLAIVLIVYVGARQVLDGTLSTGDLTSFLLYTLSLAMSLAFISSLMTDFLKAI 635

Query: 419 GATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEAN 478
           G+++++F++ D +P+   +S G ++Q  +G ++  ++ F YP+RP   +L  + L +   
Sbjct: 636 GSSDRIFEIFDRVPAIN-VSGGKQIQNPLGEIELKDVEFSYPTRPNNSVLKGLNLKLSKG 694

Query: 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510
            + A+VG SG GKST + ++ R Y+P+ G + 
Sbjct: 695 TITALVGPSGGGKSTVIAMIERFYDPNSGSIT 726

Dictyostelium discoideum (taxid: 44689)

>sp|Q9FNU2|AB25B_ORYSJ ABC transporter B family member 25 OS=Oryza sativa subsp. japonica GN=OsABCB25 PE=2 SV=1

 Score =  162 bits (411), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 119/425 (28%), Positives = 217/425 (51%), Gaps = 13/425 (3%)

Query: 94  GGSWWNLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPR 153
           G +   LSD +E  N   +P  V     R+  L   D   +++A  +L+VA++S I +P+
Sbjct: 19  GETSRALSDLEEGSN--VQPENV--GFCRVIKLARHDAGKLVIATMALLVASLSNILVPK 74

Query: 154 ILAEAVFSAQREEAMVFHKSSR---------FLVLLCVTSGIFSGLRSGCFSIANIVLVK 204
              + +    R+      K+           ++V++ VT  + + LR+  F+ A+  +V 
Sbjct: 75  YGGKIIDIVSRDVRRPEDKAQALDDVTGTILYIVIIVVTGSVCTALRAWLFNSASERVVA 134

Query: 205 RLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFI 264
           RLR+ L+S L+ Q++ FFD    G L SRL+ D Q + N    +++  LRN    +    
Sbjct: 135 RLRKDLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNITTTSIGLG 194

Query: 265 NLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVR 324
            +   SW LTL AL+I   +SI V  +G++ +  S  TQ   A A+++A+E+   +RTVR
Sbjct: 195 FMFATSWKLTLLALVIVPVISIAVRKFGRFLRELSHQTQAAAAVASSIAEESFGAIRTVR 254

Query: 325 VYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQ 384
            +  E  E+ RY   +++   + ++++   G+++         + V+ V+ G    + G 
Sbjct: 255 SFAQESHEVLRYGEKVDETLKLGLKQAKVVGMFSGGLNAASTLSVVIVVIYGANLTINGY 314

Query: 385 VSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQ 444
           ++   LT ++LY   +  +   +    ++++++ GA+ +VFQL+D + S     +     
Sbjct: 315 MTTGSLTSFILYSLTVGSSVSALSGLYTTVMKASGASRRVFQLLDRVSSMANSGDRCPTN 374

Query: 445 RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 504
              G V+  ++ F YPSRP+  IL  + L +     VA+VG SG GK+T  NL+ R Y+P
Sbjct: 375 ENDGEVELDDVWFAYPSRPSHMILKGITLKLTPGSKVALVGPSGGGKTTIANLIERFYDP 434

Query: 505 SDGQV 509
             G++
Sbjct: 435 LKGRI 439

May be involved in redistribution of internalized aluminum. May mediate vacuolar sequestration of a metal complex.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P36371|TAP2_MOUSE Antigen peptide transporter 2 OS=Mus musculus GN=Tap2 PE=2 SV=1

 Score =  159 bits (402), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 124/406 (30%), Positives = 193/406 (47%), Gaps = 32/406 (7%)

Query: 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-EAMVFHKSSRFLV 178
           + R+  L   D   ++ A   L+VA   E  +PR     +     + +   F  +  F+ 
Sbjct: 137 MKRLLKLSRPDLPFLIAAFFFLVVAVWGETLIPRYSGRVIDILGGDFDPDAFASAIFFMC 196

Query: 179 LLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADC 238
           L  V S   +G R G F      +  R+RE L+S+LL QD+ FF     G L SRL++D 
Sbjct: 197 LFSVGSSFSAGCRGGSFLFTMSRINLRIREQLFSSLLRQDLGFFQETKTGELNSRLSSDT 256

Query: 239 QRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRA 298
             +S  +  + N++LR+ ++  G +  +L +S  LT  +LL          VY    +  
Sbjct: 257 SLMSRWLPFNANILLRSLVKVVGLYFFMLQVSPRLTFLSLLDLPLTIAAEKVYNPRHQAV 316

Query: 299 SVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYK--------IW----LEKLAFI 346
               Q+  A A  V +E +  ++TVR +G EE+E+  YK        +W    LEK  ++
Sbjct: 317 LKEIQDAVAKAGQVVREAVGGLQTVRSFGAEEQEVSHYKEALERCRQLWWRRDLEKDVYL 376

Query: 347 RIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWR 406
            IR  MA G+            QV+ +  G   I+ G+V+   L  ++LY E +      
Sbjct: 377 VIRRVMALGM------------QVLILNCGVQQILAGEVTRGGLLSFLLYQEEVGQYVRN 424

Query: 407 MVDNLSSLLQSIGATEKVFQLIDL---LPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRP 463
           +V     +L ++GA EKVF  +D    LP    L+       L G V+F ++SF YP RP
Sbjct: 425 LVYMYGDMLSNVGAAEKVFSYLDRKPNLPQPGILAP----PWLEGRVEFQDVSFSYPRRP 480

Query: 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
             P+L  +  T+    V A+VG +GSGKST   LL  LY+P+ GQ+
Sbjct: 481 EKPVLQGLTFTLHPGTVTALVGPNGSGKSTVAALLQNLYQPTGGQL 526

Involved in the transport of antigens from the cytoplasm to the endoplasmic reticulum for association with MHC class I molecules. Also acts as a molecular scaffold for the final stage of MHC class I folding, namely the binding of peptide. Nascent MHC class I molecules associate with TAP via tapasin.

Mus musculus (taxid: 10090)

>sp|Q9NRK6|ABCBA_HUMAN ATP-binding cassette sub-family B member 10, mitochondrial OS=Homo sapiens GN=ABCB10 PE=1 SV=2

 Score =  158 bits (399), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/312 (31%), Positives = 177/312 (56%), Gaps = 7/312 (2%)

Query: 202 LVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAG 261
           +V RLR +L+S++L Q+V FFD    G L +RL++D   L   +  +++  LR   Q + 
Sbjct: 243 IVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASV 302

Query: 262 AFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMR 321
               +  +S  L    L +   +SII  +YG+Y ++ + +TQ+  A A  +A+E +  +R
Sbjct: 303 GISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVR 362

Query: 322 TVRVYGTEEKELGRYKIWLEKLAFIRIRESMAY-GLWNMSFITLYRSTQVMAVLL-GGMS 379
           TVR +G E  E+ +Y   ++ +  +  +E+ A  G +  +   L  +  V++VL  GG+ 
Sbjct: 363 TVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGAT--GLSGNLIVLSVLYKGGLL 420

Query: 380 IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE 439
           +    ++  +L+ +++Y  W+  +   +    S L++ +GA  ++++L++  P   F +E
Sbjct: 421 MGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPF-NE 479

Query: 440 GVKL--QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 497
           GV L  +   G ++F N+ F YP+RP VPI     L+I +  V A+VG SGSGKST ++L
Sbjct: 480 GVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSL 539

Query: 498 LLRLYEPSDGQV 509
           LLRLY+P+ G +
Sbjct: 540 LLRLYDPASGTI 551

May mediate critical mitochondrial transport functions related to heme biosynthesis.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	510
225452338	658	PREDICTED: ABC transporter B family memb	0.819	0.635	0.677	1e-167
225470565	705	PREDICTED: ABC transporter B family memb	0.962	0.696	0.589	1e-166
255560910	682	abc transporter, putative [Ricinus commu	0.892	0.667	0.615	1e-165
357485675	712	ABC transporter B family member [Medicag	0.866	0.620	0.612	1e-161
296080955	587	unnamed protein product [Vitis vinifera]	0.784	0.681	0.657	1e-156
449450191	699	PREDICTED: ABC transporter B family memb	0.990	0.722	0.555	1e-155
356501630	701	PREDICTED: ABC transporter B family memb	0.988	0.718	0.520	1e-155
30698733	700	ABC transporter B family member 26 [Arab	0.919	0.67	0.554	1e-154
356497303	701	PREDICTED: ABC transporter B family memb	0.870	0.633	0.578	1e-153
297838869	700	ATTAP1 [Arabidopsis lyrata subsp. lyrata	0.919	0.67	0.554	1e-153

>gi|225452338|ref|XP_002272855.1| PREDICTED: ABC transporter B family member 26, chloroplastic [Vitis vinifera] gi|296087608|emb|CBI34864.3| unnamed protein product [Vitis vinifera]

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 286/422 (67%), Positives = 349/422 (82%), Gaps = 4/422 (0%)

Query: 88  IRQVFPGGSWWNLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVS 147
           IR V PGGSWW LS+ +E     AK   V   L R+W L+  ++W++ VAV SL +AA+S
Sbjct: 55  IRSVLPGGSWWKLSEYEE----EAKAREVMPTLRRIWVLVEDERWVIFVAVGSLTLAALS 110

Query: 148 EITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLR 207
           EI+MP ++A +VFSAQ  E MVF+++S+ L+LLC+ SGI SGLRSGCF+IANI LVKRLR
Sbjct: 111 EISMPNLIAASVFSAQSGETMVFYRNSQLLILLCILSGICSGLRSGCFAIANITLVKRLR 170

Query: 208 ETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLL 267
           ETL SA+LFQD+ FF+TEAVG LTSRL ADCQ+LSN+IGNDINMILRN LQGAGA I+LL
Sbjct: 171 ETLCSAILFQDIDFFETEAVGDLTSRLGADCQQLSNIIGNDINMILRNFLQGAGALIHLL 230

Query: 268 TLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYG 327
           TLSWPL LS ++ICS LS I  VYGQY+++A++ TQE  A AN VAQET  +MRTVR YG
Sbjct: 231 TLSWPLALSTIVICSVLSAIFLVYGQYRRKAAMFTQEFTACANEVAQETFSLMRTVRTYG 290

Query: 328 TEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSP 387
           TEE EL RYK WL+KLAF+ IRES+AYG W +SF TLYRSTQV+AVLLGGMSI+ G V+P
Sbjct: 291 TEENELRRYKQWLDKLAFVSIRESVAYGFWGLSFNTLYRSTQVIAVLLGGMSILTGHVTP 350

Query: 388 EQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLM 447
           EQLTKY+LYCEWLIY T R+ DN +SLLQS+GA+ KVFQL+DLLPS+QF SEGVKL+RLM
Sbjct: 351 EQLTKYILYCEWLIYGTLRLGDNFASLLQSVGASGKVFQLMDLLPSDQFKSEGVKLKRLM 410

Query: 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
           GH++F N+SF+YPSR  VP+L HV ++++ANEVVAIVG+SGSGKS+ VNLLLRLYEP+ G
Sbjct: 411 GHIEFANVSFYYPSRVMVPVLEHVNISVQANEVVAIVGISGSGKSSLVNLLLRLYEPTTG 470

Query: 508 QV 509
           Q+
Sbjct: 471 QI 472

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470565|ref|XP_002272060.1| PREDICTED: ABC transporter B family member 26, chloroplastic-like [Vitis vinifera]

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 297/504 (58%), Positives = 378/504 (75%), Gaps = 13/504 (2%)

Query: 6   HTNLHSVTAFYPTHTKPLPIFTVKIPHFKSKHQFQIISNNKKFKRVSFPITNSAFTDSGV 65
           +  +H ++ F  T+TK LP F    P     + F   S  K      F + NS       
Sbjct: 29  NNTIHGISRF-TTNTK-LPFFQCTSPPNCRLNSF---STPKSASVNGFSVHNSN------ 77

Query: 66  PNNESNDNIIKFFDYFQDLVAFIRQVFPGGSWWNLSDGQEAENPTAKPITVWIALSRMWN 125
           P    ND + +F   F++LV FIR ++PGGSWW+LSD  +    TAKP+TV  AL RMW 
Sbjct: 78  PEGSENDQV-EFPKRFRELVHFIRSIWPGGSWWSLSDHADFIM-TAKPVTVLRALQRMWG 135

Query: 126 LIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSG 185
           L+ +D+WI+  A ++L++AAVSEI++P  L  ++FSAQ  E +VFH++   LV LC  SG
Sbjct: 136 LVAKDRWIIFAAFSALVLAAVSEISIPHFLTASIFSAQSGEIVVFHRNVGLLVFLCFASG 195

Query: 186 IFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVI 245
           I SGLR  CF IAN++LVKR+RETLYSALLFQD+ FFD E VG LTSRL ADCQ++S VI
Sbjct: 196 ICSGLRGCCFGIANMILVKRMRETLYSALLFQDISFFDNETVGDLTSRLGADCQQVSRVI 255

Query: 246 GNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQEC 305
           GND+N+ILRN LQG GA I LL LSWPL L  ++ICS L II+ +YG+YQK+A+ L QE 
Sbjct: 256 GNDLNLILRNVLQGTGALIYLLVLSWPLGLCTMMICSTLLIIMLLYGRYQKKAAKLIQEF 315

Query: 306 NAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLY 365
            A AN VAQET  +MRTVRVYGTEE+E+GRYK WL K+A I +R+S AYGLWN+SF TLY
Sbjct: 316 TASANEVAQETFSLMRTVRVYGTEEQEVGRYKQWLGKIADISLRQSAAYGLWNLSFNTLY 375

Query: 366 RSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVF 425
            STQV+AVL+GGMSI+ G ++ EQLTK++LY EWLIY+TW + DNLSSL+QS+GA+EKVF
Sbjct: 376 HSTQVIAVLIGGMSILAGHITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVF 435

Query: 426 QLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVG 485
           QL+DLLPS+QF+S+G+KLQRL+GH++FVN+SF+Y SR  VP+L HV +++  NEV+AIVG
Sbjct: 436 QLMDLLPSDQFISKGLKLQRLLGHIEFVNVSFYYASRAMVPVLQHVNISVHPNEVLAIVG 495

Query: 486 LSGSGKSTFVNLLLRLYEPSDGQV 509
           LSGSGKST VNLLLRLYEP+DGQV
Sbjct: 496 LSGSGKSTIVNLLLRLYEPTDGQV 519

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560910|ref|XP_002521468.1| abc transporter, putative [Ricinus communis] gi|223539367|gb|EEF40958.1| abc transporter, putative [Ricinus communis]

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 295/479 (61%), Positives = 360/479 (75%), Gaps = 24/479 (5%)

Query: 33  FKSKHQFQIISNNKKFKRVSFPITNSAFTDSGVPNNESNDNIIKFFDYFQDLVAFIRQVF 92
           F+SK+Q  +     +++   FP        S +  N S +  +KF   F++         
Sbjct: 40  FQSKYQSPVTCRRIRYRGFKFP-------HSALDTNNSKN--LKFLQNFRN--------- 81

Query: 93  PGGSWWNLSDGQEAENPT--AKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEIT 150
               WW LSD +E E+ +     +TV  AL RM  LIG +KWI+ VA  SLI AA+SEIT
Sbjct: 82  ----WWYLSDSKEVESSSNGKNSMTVLEALLRMLKLIGNEKWIMFVAFGSLITAAISEIT 137

Query: 151 MPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETL 210
           MP ILAE++FSAQ   AM F ++++ L  LC+ SGI SGLRS  F++ANI+LVKRLRETL
Sbjct: 138 MPSILAESIFSAQNCHAMAFSRNAQLLGFLCLISGISSGLRSVSFAVANIILVKRLRETL 197

Query: 211 YSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLS 270
           YSAL+FQD+ FFD+E VGGLTSRL +DCQRLS+VIGNDI++I+RN LQG GA INLL LS
Sbjct: 198 YSALIFQDINFFDSEEVGGLTSRLGSDCQRLSHVIGNDIHLIVRNVLQGTGAMINLLCLS 257

Query: 271 WPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEE 330
           WPL LS++LIC  L+    VYG YQK+A+ LTQ+  AHAN  A+ETL ++RTVRVYGTE 
Sbjct: 258 WPLALSSILICCLLAATFLVYGWYQKKAAKLTQDFTAHANEAAEETLSLIRTVRVYGTER 317

Query: 331 KELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQL 390
           KE  RYK WL+KLAFI  RES AYGLW M F  LYR+TQV AVLLGGMS+M G VS EQL
Sbjct: 318 KEFRRYKHWLQKLAFISYRESAAYGLWTMIFHGLYRATQVFAVLLGGMSVMSGHVSTEQL 377

Query: 391 TKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHV 450
           TKY+LYCEWLIYATWR+VDN+SSLLQ+IGA+EKVFQL+ L PS+QFLS+G KL RLMG V
Sbjct: 378 TKYILYCEWLIYATWRVVDNISSLLQAIGASEKVFQLMQLSPSSQFLSKGEKLPRLMGQV 437

Query: 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
            FV+++FHYPSRPTVPIL H+ L +EANEVVA+VGLSGSGK+T VNLLLRLYEPS+GQ+
Sbjct: 438 HFVDVTFHYPSRPTVPILEHIHLLLEANEVVALVGLSGSGKTTLVNLLLRLYEPSNGQI 496

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485675|ref|XP_003613125.1| ABC transporter B family member [Medicago truncatula] gi|355514460|gb|AES96083.1| ABC transporter B family member [Medicago truncatula]

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 272/444 (61%), Positives = 347/444 (78%), Gaps = 2/444 (0%)

Query: 67  NNESNDNI-IKFFDYFQDLVAFIRQVFPGGSWWNLSDGQEAENPTAKPITVWIALSRMWN 125
           N+ES  N   +F D  + LV+F+  +FPGG+WWN SD  E  +   +P+TVW AL +MWN
Sbjct: 73  NSESASNASDEFLDRIRKLVSFLPSIFPGGTWWNFSDDVEV-SMFNQPVTVWYALGKMWN 131

Query: 126 LIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSG 185
           L+ +D+W++  A ++LI+AAVSEI++P  L  ++FSAQ  +  VFH + R L+L+CVTSG
Sbjct: 132 LVAKDRWVIFAAFSALIIAAVSEISIPHFLTASIFSAQGGDIKVFHGNVRLLILMCVTSG 191

Query: 186 IFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVI 245
           I SG+R   F IAN++LVKR+RETLYS+LL QD+ FFD E VG LTSRL ADCQ++S VI
Sbjct: 192 ICSGIRGCFFGIANMILVKRMRETLYSSLLLQDISFFDNETVGDLTSRLGADCQQVSRVI 251

Query: 246 GNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQEC 305
           GND+N+ILRN LQG G+ I LL LSWPL L  L+ICS L+ ++  YG YQK+A+ L QE 
Sbjct: 252 GNDLNLILRNVLQGGGSLIYLLILSWPLGLCTLVICSILAAVMLRYGWYQKKAARLIQEV 311

Query: 306 NAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLY 365
            A ANNVAQET  ++RTVRVYGTEE+E GRYK WLEKLA I +R+S AYG WN SF TLY
Sbjct: 312 TASANNVAQETFSLIRTVRVYGTEEEEHGRYKWWLEKLADISLRQSAAYGFWNFSFNTLY 371

Query: 366 RSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVF 425
            STQ++AVL GGMSI+ G ++ E+LTK++LY EWLIY+TW + DN+S+L+QS+GA+EKVF
Sbjct: 372 HSTQIIAVLFGGMSILSGHITAEKLTKFILYSEWLIYSTWWVGDNVSNLMQSVGASEKVF 431

Query: 426 QLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVG 485
            L+DL PSNQF++EGVKLQ L GH++FVN+SFHYPSRPTV ++ HV   +  +EVVAIVG
Sbjct: 432 NLMDLSPSNQFITEGVKLQSLTGHIEFVNVSFHYPSRPTVHVVQHVNFVVNPSEVVAIVG 491

Query: 486 LSGSGKSTFVNLLLRLYEPSDGQV 509
           LSGSGKST VNLLLRLYEP+ GQV
Sbjct: 492 LSGSGKSTLVNLLLRLYEPTSGQV 515

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296080955|emb|CBI18648.3| unnamed protein product [Vitis vinifera]

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 263/400 (65%), Positives = 329/400 (82%)

Query: 110 TAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMV 169
           TAKP+TV  AL RMW L+ +D+WI+  A ++L++AAVSEI++P  L  ++FSAQ  E +V
Sbjct: 2   TAKPVTVLRALQRMWGLVAKDRWIIFAAFSALVLAAVSEISIPHFLTASIFSAQSGEIVV 61

Query: 170 FHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGG 229
           FH++   LV LC  SGI SGLR  CF IAN++LVKR+RETLYSALLFQD+ FFD E VG 
Sbjct: 62  FHRNVGLLVFLCFASGICSGLRGCCFGIANMILVKRMRETLYSALLFQDISFFDNETVGD 121

Query: 230 LTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVS 289
           LTSRL ADCQ++S VIGND+N+ILRN LQG GA I LL LSWPL L  ++ICS L II+ 
Sbjct: 122 LTSRLGADCQQVSRVIGNDLNLILRNVLQGTGALIYLLVLSWPLGLCTMMICSTLLIIML 181

Query: 290 VYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIR 349
           +YG+YQK+A+ L QE  A AN VAQET  +MRTVRVYGTEE+E+GRYK WL K+A I +R
Sbjct: 182 LYGRYQKKAAKLIQEFTASANEVAQETFSLMRTVRVYGTEEQEVGRYKQWLGKIADISLR 241

Query: 350 ESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVD 409
           +S AYGLWN+SF TLY STQV+AVL+GGMSI+ G ++ EQLTK++LY EWLIY+TW + D
Sbjct: 242 QSAAYGLWNLSFNTLYHSTQVIAVLIGGMSILAGHITAEQLTKFILYSEWLIYSTWWVGD 301

Query: 410 NLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILN 469
           NLSSL+QS+GA+EKVFQL+DLLPS+QF+S+G+KLQRL+GH++FVN+SF+Y SR  VP+L 
Sbjct: 302 NLSSLMQSVGASEKVFQLMDLLPSDQFISKGLKLQRLLGHIEFVNVSFYYASRAMVPVLQ 361

Query: 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           HV +++  NEV+AIVGLSGSGKST VNLLLRLYEP+DGQV
Sbjct: 362 HVNISVHPNEVLAIVGLSGSGKSTIVNLLLRLYEPTDGQV 401

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450191|ref|XP_004142847.1| PREDICTED: ABC transporter B family member 26, chloroplastic-like [Cucumis sativus]

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 287/517 (55%), Positives = 369/517 (71%), Gaps = 12/517 (2%)

Query: 1   MATSPHTNLHSVTAFYPTHTKPLPIFTVKIPHFKSKHQFQI-ISNN---KKFKRVSFPIT 56
           M TS      ++   +P +  P             K QF I IS N    +FK  S+ + 
Sbjct: 1   MNTSGDIAYQNLRTSFPPYLPPPEFAPTSGFKLTKKLQFPIMISTNCRRNEFKSSSYRVR 60

Query: 57  NSAFT-DSGVPNNESNDNIIKFFDYFQDLVAFIRQVFPG--GSWWNLSDGQEAENPTAKP 113
           NS+      +P ++ N +  + F+ F   +     +FPG   SWWNL + ++ +   AK 
Sbjct: 61  NSSLMFQYMMPEDDGNGD--ENFESFGHWIHVSLSLFPGVSYSWWNLDEDKQVQIGAAKR 118

Query: 114 ITVWIALSRMWNLI-GRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHK 172
           ITV++AL RMW L+   ++W++LVA  +L +AA+SEI+MP ILA+++FSA R +  VF +
Sbjct: 119 ITVYLALRRMWKLVWDSNRWVLLVAFGALTMAAISEISMPNILADSIFSASRGKTTVFAR 178

Query: 173 SSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTS 232
               LV L +TSGI SGLRSGCF +ANI+LVKRLRE LYSA++FQD+ FFD E VG LTS
Sbjct: 179 KFHLLVFLSITSGICSGLRSGCFGLANIILVKRLRELLYSAIVFQDISFFDKETVGNLTS 238

Query: 233 RLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYG 292
           RL ADCQ+L+++IGN+IN+I RN+LQ  GA   LLTLSWPL +S L+ICS LS I  +Y 
Sbjct: 239 RLGADCQQLAHIIGNNINLITRNALQATGALAYLLTLSWPLAISTLVICSVLSAIFLLYS 298

Query: 293 QYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESM 352
           +Y  R + LTQE  A A++VA+E+L +++T+R+YGTE KE+GRYK WL++LAFI  RES 
Sbjct: 299 RYVMRTAKLTQEFAACAHDVARESLTLVKTIRIYGTERKEVGRYKQWLDRLAFISTRESA 358

Query: 353 AYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLS 412
           AYGLWNMSF TLYRSTQV AVLLGG++I+ GQ S EQLTKYVLYCEWLIYATWR+ DNLS
Sbjct: 359 AYGLWNMSFSTLYRSTQVFAVLLGGIAILSGQTSAEQLTKYVLYCEWLIYATWRITDNLS 418

Query: 413 SLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVC 472
           SLL SI A+E VFQL+DLLPS QFL +GVKL  LMGH+QFVN+SFHY  R    +L H+ 
Sbjct: 419 SLLYSIAASETVFQLMDLLPSEQFLCKGVKLPELMGHIQFVNVSFHYHLRDM--LLEHIN 476

Query: 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +TI ANEVVA+VG SG GKST VNLLLRLYEP++GQ+
Sbjct: 477 ITIRANEVVALVGPSGCGKSTLVNLLLRLYEPTNGQI 513

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501630|ref|XP_003519627.1| PREDICTED: ABC transporter B family member 26, chloroplastic-like isoform 1 [Glycine max]

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 269/517 (52%), Positives = 361/517 (69%), Gaps = 13/517 (2%)

Query: 1   MATSPHTNLHSVTAFYPTHTKPLPIFTVKIPHFKSKHQFQIISNNKKFKRVSFPITNSAF 60
           +A +P ++L      +P      P+ T     F       ++  +++    S P   ++ 
Sbjct: 5   LARTPPSSLSP----FPLQNARAPLITASQKRFPLAATRIVLFTSRRSILASPPPKCASI 60

Query: 61  TDSGVPNNESND--------NIIKFFDYFQDLVAFIRQVFPGGSWWNLSDGQEAENPTAK 112
               VPNN            N  +  +  +  V  +  + PGG WW  S G       A+
Sbjct: 61  NGVSVPNNPEASGEEQQQVYNASELLERIRKWVGILPSILPGGRWWEFS-GDVDVQVVAQ 119

Query: 113 PITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHK 172
           P+TVW AL +MW+L+  D+W++  A ++LIVAA+SEI++P +L  ++FSAQ  +  V+H+
Sbjct: 120 PVTVWRALGKMWDLVAGDRWVIFAAFSALIVAAISEISIPHLLTASIFSAQSADLTVYHR 179

Query: 173 SSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTS 232
           + R LVLLCV SGI SG+R   F IAN++LVKR+RETLYS+LL QD+ FFD E VG LTS
Sbjct: 180 NVRLLVLLCVASGICSGIRGCFFGIANMILVKRMRETLYSSLLLQDISFFDNETVGDLTS 239

Query: 233 RLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYG 292
           RL ADCQ++S VIGND+N+I+RN LQG G+ I LL LSWPL LS L++CS L+ ++  YG
Sbjct: 240 RLGADCQQVSRVIGNDLNLIMRNVLQGGGSLIYLLILSWPLGLSTLVVCSILAAVMLRYG 299

Query: 293 QYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESM 352
           +YQK+A+ L QE  A AN+VAQET  ++RTVRVYGTEE+E GRYK WLEKLA I +R+S 
Sbjct: 300 RYQKKAARLIQEVTASANDVAQETFSLVRTVRVYGTEEEEHGRYKWWLEKLADISLRQSA 359

Query: 353 AYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLS 412
           AYG+WN SF  LY STQV+AVL GGMSI+ G ++ E+LTK++LY EWLIY+TW + DN+S
Sbjct: 360 AYGVWNFSFNILYHSTQVIAVLFGGMSILAGHITAEKLTKFILYSEWLIYSTWWVGDNIS 419

Query: 413 SLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVC 472
           +L+QS+GA+EKVF L+DLLPS+QF+  GV LQRL G ++F+N+SFHYPSRPTV ++ HV 
Sbjct: 420 NLMQSVGASEKVFHLMDLLPSSQFIERGVTLQRLTGRIEFLNVSFHYPSRPTVSVVQHVN 479

Query: 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
             +   EVVAIVGLSGSGKST VNLLLRLYEP++GQ+
Sbjct: 480 FVVYPGEVVAIVGLSGSGKSTLVNLLLRLYEPTNGQI 516

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30698733|ref|NP_177218.3| ABC transporter B family member 26 [Arabidopsis thaliana] gi|75330788|sp|Q8RY46.1|AB26B_ARATH RecName: Full=ABC transporter B family member 26, chloroplastic; Short=ABC transporter ABCB.26; Short=AtABCB26; AltName: Full=Antigen peptide transporter-like 1; AltName: Full=Transporter associated with antigen processing-like protein 1; Short=AtTAP1; Flags: Precursor gi|19335722|gb|AAL85485.1| transporter associated with antigen processing-like protein [Arabidopsis thaliana] gi|110737412|dbj|BAF00650.1| transporter associated with antigen processing-like protein [Arabidopsis thaliana] gi|332196967|gb|AEE35088.1| ABC transporter B family member 26 [Arabidopsis thaliana]

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 261/471 (55%), Positives = 348/471 (73%), Gaps = 2/471 (0%)

Query: 39  FQIISNNKKFKRVSFPITNSAFTDSGVPNNESNDNIIKFFDYFQDLVAFIRQVFPGGSWW 98
            Q  + N +   ++    N A  ++        DN+    +  +  + F+R + PGGSWW
Sbjct: 46  LQSSTRNYRLPSINCSTVNGAVAETAEYYEGEGDNV-SLAEKIRQCIDFLRTILPGGSWW 104

Query: 99  NLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEA 158
           + SD  +     AKP+TVW ALSRMW L+  D+W++  A ++LIVAA+SEIT+P  L  +
Sbjct: 105 SFSDEVDGRF-IAKPVTVWRALSRMWELVAEDRWVIFAAFSTLIVAALSEITIPHFLTAS 163

Query: 159 VFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQD 218
           +FSAQ  +  VFH++ + LV LCVTSGI SG+R   F IAN++LVKR+RETLYS LLFQD
Sbjct: 164 IFSAQSGDIAVFHRNVKLLVTLCVTSGICSGIRGCFFGIANMILVKRMRETLYSTLLFQD 223

Query: 219 VYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSAL 278
           + FFD++ VG LTSRL +DCQ++S VIGND+NMI RN LQG GA I LL LSWPL L  L
Sbjct: 224 ISFFDSQTVGDLTSRLGSDCQQVSRVIGNDLNMIFRNVLQGTGALIYLLILSWPLGLCTL 283

Query: 279 LICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKI 338
           +IC  L+ ++ VYG YQK+ + L QE  A AN VAQET  +MRTVRVYGTE++E  RY  
Sbjct: 284 VICCILAAVMFVYGMYQKKTAKLIQEITASANEVAQETYSLMRTVRVYGTEKQEFKRYNH 343

Query: 339 WLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCE 398
           WL++LA I +R+S AYG+WN SF TLY +TQ++AVL+GG+SI+ GQ++ EQLTK++LY E
Sbjct: 344 WLQRLADISLRQSAAYGIWNWSFNTLYHATQIIAVLVGGLSILAGQITAEQLTKFLLYSE 403

Query: 399 WLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFH 458
           WLIYATW + DNLSSL+QS+GA+EKVFQ++DL PS+QF+S+G +LQRL GH++FV++SF 
Sbjct: 404 WLIYATWWVGDNLSSLMQSVGASEKVFQMMDLKPSDQFISKGTRLQRLTGHIEFVDVSFS 463

Query: 459 YPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           YPSR  V ++ +V +++   EVVAIVGLSGSGKST VNLLL+LYEP+ GQ+
Sbjct: 464 YPSRDEVAVVQNVNISVHPGEVVAIVGLSGSGKSTLVNLLLQLYEPTSGQI 514

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497303|ref|XP_003517500.1| PREDICTED: ABC transporter B family member 26, chloroplastic-like [Glycine max]

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 261/451 (57%), Positives = 337/451 (74%), Gaps = 7/451 (1%)

Query: 65  VPNNESNDNIIKFF------DYFQDLVAFIRQVFPGGSWWNLSDGQEAENPTAKPITVWI 118
           VPNN       + +      D  +  V F+  + PGG WW  S G       A+P+TVW 
Sbjct: 67  VPNNPEASGEQQVYSASGLLDRIRKWVGFLPSILPGGRWWEFS-GDVDVQVVAQPVTVWR 125

Query: 119 ALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLV 178
           AL +MW+L+ RD+W++  A ++LIVAAVSEI++P  L  ++FSAQ  +  VFH++ R LV
Sbjct: 126 ALGKMWDLVARDRWVIFAAFSALIVAAVSEISIPHFLTASIFSAQSADLAVFHRNVRLLV 185

Query: 179 LLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADC 238
           LLCV SGI SG+R   F IAN++LVKR+RETLYS+LL QD+ FFD E VG LTSRL ADC
Sbjct: 186 LLCVASGICSGIRGCFFGIANMILVKRMRETLYSSLLLQDISFFDNETVGDLTSRLGADC 245

Query: 239 QRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRA 298
           Q++S VIGND+N+I+RN LQG G+ I LL LSWPL LS L++CS L+ ++  YG+YQK+A
Sbjct: 246 QQVSRVIGNDLNLIMRNVLQGGGSLIYLLILSWPLGLSTLVVCSILAAVMLRYGRYQKKA 305

Query: 299 SVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWN 358
           + L QE  A AN+VAQE   ++RTVRVYGTEE+E GRYK WLEKLA I +R+S AYG+WN
Sbjct: 306 ARLIQEVTASANDVAQEMFSLIRTVRVYGTEEEEHGRYKWWLEKLADISLRQSAAYGVWN 365

Query: 359 MSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSI 418
            SF  LY STQV+AVL GGMSI+ G ++ E+LTK++LY EWLIY+TW + DN+S+L+QS+
Sbjct: 366 FSFNILYHSTQVIAVLFGGMSILAGHITAEKLTKFILYSEWLIYSTWWVGDNISNLMQSV 425

Query: 419 GATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEAN 478
           GA+EKVF L+DL PS+QF+  GVKLQRL G ++F+N+SFHYPSRP   ++ HV   +   
Sbjct: 426 GASEKVFHLMDLSPSSQFIERGVKLQRLTGCIEFLNVSFHYPSRPMASVVQHVNFVVHPG 485

Query: 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           EVVAIVGLSGSGKST VNLLLRLYEP++GQ+
Sbjct: 486 EVVAIVGLSGSGKSTLVNLLLRLYEPTNGQI 516

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838869|ref|XP_002887316.1| ATTAP1 [Arabidopsis lyrata subsp. lyrata] gi|297333157|gb|EFH63575.1| ATTAP1 [Arabidopsis lyrata subsp. lyrata]

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 261/471 (55%), Positives = 347/471 (73%), Gaps = 2/471 (0%)

Query: 39  FQIISNNKKFKRVSFPITNSAFTDSGVPNNESNDNIIKFFDYFQDLVAFIRQVFPGGSWW 98
            Q  S N +   ++    N A  ++        DN+    +  +  + FIR + PGGSWW
Sbjct: 46  LQSSSRNYRLPSINCSTVNGAVAETAEYYEGEGDNV-SVPEKIRQCIDFIRTILPGGSWW 104

Query: 99  NLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEA 158
           + SD  +     AKP+TVW AL+RMW L+  D+W++  A ++LIVAA+SEIT+P  L  +
Sbjct: 105 SFSDEVDGRF-IAKPVTVWRALTRMWELVAEDRWVIFAAFSTLIVAALSEITIPHFLTAS 163

Query: 159 VFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQD 218
           +FSAQ  +  VF ++ + LV LCVTSGI SG+R   F IAN++LVKR+RETLYS LLFQD
Sbjct: 164 IFSAQSGDIAVFRRNVKLLVTLCVTSGICSGIRGCFFGIANMILVKRMRETLYSTLLFQD 223

Query: 219 VYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSAL 278
           + FFD++ VG LTSRL +DCQ++S VIGND+NMI RN LQG GA I LL LSWPL L  L
Sbjct: 224 ISFFDSQTVGDLTSRLGSDCQQVSRVIGNDLNMIFRNVLQGTGALIYLLILSWPLGLCTL 283

Query: 279 LICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKI 338
           +IC  L+ ++ VYG YQK+ + L QE  A AN VAQET  +MRTVRVYGTE++E  RY  
Sbjct: 284 VICCILAAVMFVYGMYQKKTAKLIQEITASANEVAQETYSLMRTVRVYGTEKQEFKRYNH 343

Query: 339 WLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCE 398
           WL++LA I +R+S AYG+WN SF TLY +TQ++AVL+GG+SI+ GQ++ EQLTK++LY E
Sbjct: 344 WLQRLADISLRQSAAYGIWNWSFNTLYHATQIIAVLIGGLSILAGQITAEQLTKFLLYSE 403

Query: 399 WLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFH 458
           WLIYATW + DNLSSL+QS+GA+EKVFQ++DL PS+QF+S+G +LQRL GH++FV++SF 
Sbjct: 404 WLIYATWWVGDNLSSLMQSVGASEKVFQMMDLKPSDQFISKGTRLQRLTGHIEFVDVSFS 463

Query: 459 YPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           YPSR  V ++ +V +++   EVVAIVGLSGSGKST VNLLL+LYEP+ GQ+
Sbjct: 464 YPSREEVAVVQNVSMSVHPGEVVAIVGLSGSGKSTLVNLLLQLYEPTSGQI 514

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	510
TAIR|locus:2026790	700	ABCB26 "ATP-binding cassette B	0.915	0.667	0.543	7.4e-137
UNIPROTKB|A8JBH0	560	CHLREDRAFT_121501 "Predicted p	0.562	0.512	0.379	4.2e-53
WB|WBGene00001812	761	haf-2 [Caenorhabditis elegans	0.643	0.431	0.349	8e-53
UNIPROTKB|O02086	761	haf-2 "Protein HAF-2" [Caenorh	0.643	0.431	0.349	8e-53
ZFIN|ZDB-GENE-050517-12	789	abcb9 "ATP-binding cassette, s	0.703	0.455	0.331	1.5e-49
UNIPROTKB|F1NN89	609	ABCB9 "Uncharacterized protein	0.639	0.535	0.345	1.1e-46
UNIPROTKB|F1Q234	766	ABCB9 "Uncharacterized protein	0.694	0.462	0.328	1.2e-46
UNIPROTKB|E2R807	930	ABCB9 "Uncharacterized protein	0.694	0.380	0.328	3.3e-46
UNIPROTKB|Q9NP78	766	ABCB9 "ATP-binding cassette su	0.7	0.466	0.326	3.5e-46
UNIPROTKB|Q6P2Q0	769	ABCB9 "ATP-binding cassette su	0.7	0.464	0.326	3.6e-46

TAIR|locus:2026790 ABCB26 "ATP-binding cassette B26" [Arabidopsis thaliana (taxid:3702)]

 Score = 1340 (476.8 bits), Expect = 7.4e-137, P = 7.4e-137
 Identities = 256/471 (54%), Positives = 338/471 (71%)

Query:    40 QIISNNKKFKRVSFPITNSAFTDSGVPNNESNDNIIKFFDYFQDLVAFIRQVFPGGSWWN 99
             Q  + N +   ++    N A  ++        DN+    +  +  + F+R + PGGSWW+
Sbjct:    47 QSSTRNYRLPSINCSTVNGAVAETAEYYEGEGDNV-SLAEKIRQCIDFLRTILPGGSWWS 105

Query:   100 LSDGQEAENPTAKPITVWIALSRMWNLIGRDKWXXXXXXXXXXXXXXXEITMPRILAEAV 159
              SD  +     AKP+TVW ALSRMW L+  D+W               EIT+P  L  ++
Sbjct:   106 FSDEVDGRF-IAKPVTVWRALSRMWELVAEDRWVIFAAFSTLIVAALSEITIPHFLTASI 164

Query:   160 FSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCF-SIANIVLVKRLRETLYSALLFQD 218
             FSAQ  +  VFH++ + LV LCVTSGI SG+R GCF  IAN++LVKR+RETLYS LLFQD
Sbjct:   165 FSAQSGDIAVFHRNVKLLVTLCVTSGICSGIR-GCFFGIANMILVKRMRETLYSTLLFQD 223

Query:   219 VYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSAL 278
             + FFD++ VG LTSRL +DCQ++S VIGND+NMI RN LQG GA I LL LSWPL L  L
Sbjct:   224 ISFFDSQTVGDLTSRLGSDCQQVSRVIGNDLNMIFRNVLQGTGALIYLLILSWPLGLCTL 283

Query:   279 LICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKI 338
             +IC  L+ ++ VYG YQK+ + L QE  A AN VAQET  +MRTVRVYGTE++E  RY  
Sbjct:   284 VICCILAAVMFVYGMYQKKTAKLIQEITASANEVAQETYSLMRTVRVYGTEKQEFKRYNH 343

Query:   339 WLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCE 398
             WL++LA I +R+S AYG+WN SF TLY +TQ++AVL+GG+SI+ GQ++ EQLTK++LY E
Sbjct:   344 WLQRLADISLRQSAAYGIWNWSFNTLYHATQIIAVLVGGLSILAGQITAEQLTKFLLYSE 403

Query:   399 WLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFH 458
             WLIYATW + DNLSSL+QS+GA+EKVFQ++DL PS+QF+S+G +LQRL GH++FV++SF 
Sbjct:   404 WLIYATWWVGDNLSSLMQSVGASEKVFQMMDLKPSDQFISKGTRLQRLTGHIEFVDVSFS 463

Query:   459 YPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
             YPSR  V ++ +V +++   EVVAIVGLSGSGKST VNLLL+LYEP+ GQ+
Sbjct:   464 YPSRDEVAVVQNVNISVHPGEVVAIVGLSGSGKSTLVNLLLQLYEPTSGQI 514

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005215 "transporter activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0000302 "response to reactive oxygen species" evidence=RCA

GO:0010039 "response to iron ion" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

GO:0055072 "iron ion homeostasis" evidence=RCA

UNIPROTKB|A8JBH0 CHLREDRAFT_121501 "Predicted protein" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 510 (184.6 bits), Expect = 4.2e-53, Sum P(2) = 4.2e-53
 Identities = 110/290 (37%), Positives = 172/290 (59%)

Query:   221 FFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLI 280
             FFD E VG LTSRL ADCQ ++ VI  + N+ +RN LQ  G  + L  LS  L    + I
Sbjct:    92 FFDGEDVGNLTSRLQADCQAMTKVIATNANIAVRNLLQAVGGIVYLYLLSPSLCGMTVAI 151

Query:   281 CSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWL 340
              + L  +  VYG + +R   + Q+  A +N VA+E L + R VR +GTE  E  RY  WL
Sbjct:   152 SAVLWAVTIVYGDFARRMQKIFQDVLAESNTVAEEALTLSRVVRTFGTEGTETKRYTTWL 211

Query:   341 EKLAFIRIRESMAYGLWNMS-FITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 399
             +KL  +  R++  Y L+  S  I  Y S +V A+++G   ++ G+++ EQLT +++Y E+
Sbjct:   212 DKLYEVGKRQAAGYSLFVASGHIACYAS-KVAALVVGCGMVLTGKLTAEQLTNFIMYVEF 270

Query:   400 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHY 459
             + YA+  + D  + + +++GA+E+V  ++   P+ Q ++ G+      G +   ++ F Y
Sbjct:   271 VTYASLNVCDEFTEICEAVGASERVVAMLGAAPAPQ-IAAGIIPATFSGRMSLEDVKFSY 329

Query:   460 PSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
             PSRP    LN V L+ E  ++ A+VGLSGSGK+T   LL RLY+PS G++
Sbjct:   330 PSRPGNMALNGVSLSFEPGKLTALVGLSGSGKTTVCALLQRLYDPSGGRL 379

GO:0005886 "plasma membrane" evidence=IBA

GO:0015421 "oligopeptide-transporting ATPase activity" evidence=IBA

GO:0016021 "integral to membrane" evidence=IBA

GO:0055085 "transmembrane transport" evidence=IBA

WB|WBGene00001812 haf-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 118/338 (34%), Positives = 195/338 (57%)

Query:   177 LVLLCVT--SGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRL 234
             +VL C+T  S +F GLR GCF  A  ++  R+R  L+++L+ QD+ F+DT   G   SRL
Sbjct:   241 IVLTCLTATSSLFGGLRGGCFDYATALVTLRIRLDLFTSLIRQDIAFYDTAKTGDTMSRL 300

Query:   235 TADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQY 294
             T+DCQ +S+ +  ++N+ +RN +   GA   ++ +SW L +   +    +  I   Y  +
Sbjct:   301 TSDCQTISSTVSTNVNVFMRNGVMLIGALAFMILMSWRLAMVTFIAVPLVGFITKAYSSF 360

Query:   295 QKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAY 354
               + S   Q+  A  N +A+E +  MRTVR +  E+KEL R++  L     +  ++S+AY
Sbjct:   361 YDKISEKLQQTIAETNQMAEEVVSTMRTVRSFACEKKELKRFEDRLSSTLSVNRKKSIAY 420

Query:   355 GL--WNMSFITLYRSTQVMAVLL-GGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNL 411
                 WN  F     +  ++AVL  GG  +M G++  EQL  ++LY   L    + +   +
Sbjct:   421 LFYTWNNEFCD---NAILVAVLFYGGHLVMTGKMEKEQLITFLLYQMQLGENLYYLSYVM 477

Query:   412 SSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHV 471
             S L++++GA+ KVF L++  P  QF  +G++   + G++ F ++ F YPSRP  P+L  +
Sbjct:   478 SGLMEAVGASRKVFDLMNRKP--QFELDGMQRPFVNGNITFSHVGFTYPSRPNNPVLKDL 535

Query:   472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
              L+I++ E VA+VG SG GKS+ V+L+   YEP +G V
Sbjct:   536 TLSIKSGETVALVGPSGGGKSSIVSLIEHFYEPDEGSV 573

GO:0005524 "ATP binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0016246 "RNA interference" evidence=IMP

UNIPROTKB|O02086 haf-2 "Protein HAF-2" [Caenorhabditis elegans (taxid:6239)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 118/338 (34%), Positives = 195/338 (57%)

Query:   177 LVLLCVT--SGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRL 234
             +VL C+T  S +F GLR GCF  A  ++  R+R  L+++L+ QD+ F+DT   G   SRL
Sbjct:   241 IVLTCLTATSSLFGGLRGGCFDYATALVTLRIRLDLFTSLIRQDIAFYDTAKTGDTMSRL 300

Query:   235 TADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQY 294
             T+DCQ +S+ +  ++N+ +RN +   GA   ++ +SW L +   +    +  I   Y  +
Sbjct:   301 TSDCQTISSTVSTNVNVFMRNGVMLIGALAFMILMSWRLAMVTFIAVPLVGFITKAYSSF 360

Query:   295 QKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAY 354
               + S   Q+  A  N +A+E +  MRTVR +  E+KEL R++  L     +  ++S+AY
Sbjct:   361 YDKISEKLQQTIAETNQMAEEVVSTMRTVRSFACEKKELKRFEDRLSSTLSVNRKKSIAY 420

Query:   355 GL--WNMSFITLYRSTQVMAVLL-GGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNL 411
                 WN  F     +  ++AVL  GG  +M G++  EQL  ++LY   L    + +   +
Sbjct:   421 LFYTWNNEFCD---NAILVAVLFYGGHLVMTGKMEKEQLITFLLYQMQLGENLYYLSYVM 477

Query:   412 SSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHV 471
             S L++++GA+ KVF L++  P  QF  +G++   + G++ F ++ F YPSRP  P+L  +
Sbjct:   478 SGLMEAVGASRKVFDLMNRKP--QFELDGMQRPFVNGNITFSHVGFTYPSRPNNPVLKDL 535

Query:   472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
              L+I++ E VA+VG SG GKS+ V+L+   YEP +G V
Sbjct:   536 TLSIKSGETVALVGPSGGGKSSIVSLIEHFYEPDEGSV 573

GO:0055085 "transmembrane transport" evidence=IBA

GO:0016021 "integral to membrane" evidence=IBA

GO:0015421 "oligopeptide-transporting ATPase activity" evidence=IBA

GO:0007041 "lysosomal transport" evidence=IBA

GO:0005886 "plasma membrane" evidence=IBA

GO:0005765 "lysosomal membrane" evidence=IBA

GO:0005743 "mitochondrial inner membrane" evidence=IRD

ZFIN|ZDB-GENE-050517-12 abcb9 "ATP-binding cassette, sub-family B (MDR/TAP), member 9" [Danio rerio (taxid:7955)]

 Score = 520 (188.1 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 121/365 (33%), Positives = 205/365 (56%)

Query:   148 EITMPRILAEAVFSAQREEAMV-FHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRL 206
             E  +P    +A+     +++M  F K    L +L + S I  G R G FS+    L  RL
Sbjct:   209 EAFIPYYTGQAIDGIVIQKSMDHFAKPMITLSVLALVSSIAIGFRGGVFSVTFARLNIRL 268

Query:   207 RETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINL 266
             R  L+ +L+ Q++ FFD    G +TSRLT+D  ++S++I  ++N+ LR+ ++  G FI +
Sbjct:   269 RNLLFRSLMHQEIGFFDANHTGDITSRLTSDTTQVSDLISQNVNLFLRSFVKAVGIFIFM 328

Query:   267 LTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVY 326
               +SW L++  ++   +++++  +YG+Y K+ +   Q   A AN VA+ET+  MRTVR +
Sbjct:   329 FGMSWKLSVVTIMGFPYIAVVSKLYGEYYKKLTKEVQTALAQANKVAEETISAMRTVRSF 388

Query:   327 GTEEKELGRYKIWLEKLAFIRIRESMAYG--LWNMSFITLYRSTQVMAVLLGGMSIMIGQ 384
               E++E   Y   L+++  +  ++++AY   +W+ S+I+   + QV  +  GG  ++  Q
Sbjct:   389 ANEDQEGDMYYSRLQEMFVLNKKQAIAYACFMWS-SYISEL-ALQVAILFYGGHLVVTNQ 446

Query:   385 VSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQ 444
             +S   L  +V+Y   L  A   +    + L+Q +GA EKVF+ ID  P +    +    +
Sbjct:   447 MSGGTLISFVIYELELGEALESISSVYTGLMQGVGAAEKVFEYIDRKPKHALNGQEAP-E 505

Query:   445 RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 504
              L G V+F N++F YPSRP + +L +V  ++   +V A+VG SG GKS+ V LL   Y P
Sbjct:   506 TLEGQVEFNNVTFAYPSRPEMDVLKNVSFSLRPGQVTALVGPSGGGKSSCVCLLENFYAP 565

Query:   505 SDGQV 509
               GQV
Sbjct:   566 QQGQV 570

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA;IBA

GO:0005524 "ATP binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042605 "peptide antigen binding" evidence=IBA

GO:0005886 "plasma membrane" evidence=IBA

GO:0046980 "tapasin binding" evidence=IBA

GO:0046979 "TAP2 binding" evidence=IBA

GO:0015833 "peptide transport" evidence=IBA

GO:0006200 "ATP catabolic process" evidence=IBA

GO:0035672 "oligopeptide transmembrane transport" evidence=IBA

GO:0042288 "MHC class I protein binding" evidence=IBA

GO:0005743 "mitochondrial inner membrane" evidence=IRD

GO:0046978 "TAP1 binding" evidence=IBA

GO:0042825 "TAP complex" evidence=IBA

GO:0015421 "oligopeptide-transporting ATPase activity" evidence=IBA

GO:0001916 "positive regulation of T cell mediated cytotoxicity" evidence=IBA

UNIPROTKB|F1NN89 ABCB9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 116/336 (34%), Positives = 192/336 (57%)

Query:   179 LLCVTSGIFS-GLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTAD 237
             LL +    F+ G+R G F++    L  RLR  L+ +L+ Q++ FFD    G + SRLT+D
Sbjct:    73 LLAIAISSFAAGVRGGVFTLIFARLNIRLRNCLFRSLMSQEMSFFDENRTGDVISRLTSD 132

Query:   238 CQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKR 297
                +S+++  +IN+ LRN ++  G    + +LSW L+L   +    + ++  +YG+Y K+
Sbjct:   133 TTIVSDLVSQNINIFLRNVVKATGVIFFMFSLSWKLSLVTFMGFPIIMLVSDIYGKYYKK 192

Query:   298 ASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG-- 355
              S   Q   A ANN A+ET+  M+TVR +  EE E   Y   L+++  +  RE++AY   
Sbjct:   193 LSKDVQNALAKANNTAEETISAMKTVRSFANEEAEANVYWQKLQQVYRLNKREALAYTYY 252

Query:   356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNL-SSL 414
             +W+ S +TL    QV  +  GG  ++ GQ++   L  +++Y E+++      V ++ S L
Sbjct:   253 VWS-SGLTLL-VVQVSILYYGGHLVISGQMTSGNLISFIIY-EFVLGDCMESVGSVYSGL 309

Query:   415 LQSIGATEKVFQLIDLLPSNQFLSEG-VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCL 473
             +Q +GA EKVF+ ID  P+   +++G +    + G V+F N++F Y +R    +L +V  
Sbjct:   310 MQGVGAAEKVFEFIDRKPT--MVNDGSLAPDHVDGKVEFRNVTFSYRTRSATQVLQNVSF 367

Query:   474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
             T+   +V A+VG SGSGKS+ VN+L   Y   DGQV
Sbjct:   368 TLHPGKVTALVGPSGSGKSSCVNILENFYPLQDGQV 403

GO:0005524 "ATP binding" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0015440 "peptide-transporting ATPase activity" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

UNIPROTKB|F1Q234 ABCB9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 493 (178.6 bits), Expect = 1.2e-46, P = 1.2e-46
 Identities = 120/365 (32%), Positives = 205/365 (56%)

Query:   148 EITMPRILAEAVFSAQREEAMV-FHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRL 206
             E  +P     A+     +++M  F  +   + LL + S   +G+R G F++    L  RL
Sbjct:   202 ETFLPYYTGRAIDGIVIQKSMEQFSTAVIVMCLLAIGSSFAAGIRGGIFTLIFARLNIRL 261

Query:   207 RETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINL 266
             R  L+ +L+ Q++ FFD    G L SRLT+D   +S+++  +IN+ LRN+++  G  + +
Sbjct:   262 RNRLFRSLVSQEMSFFDENRTGDLISRLTSDTTMVSDLVSQNINIFLRNTVKVTGVVVFM 321

Query:   267 LTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVY 326
              +LSW L+L   +    + ++  +YG+Y KR S   Q   A A++ A+ET+  M+TVR +
Sbjct:   322 FSLSWQLSLVTFMGFPIIMMVSDIYGKYYKRLSKEVQNALARASSTAEETISAMKTVRSF 381

Query:   327 GTEEKELGRYKIWLEKLAFIRIRESMAYG--LWNMSFITLYRSTQVMAVLLGGMSIMIGQ 384
               EE+E   Y   L+++  +  +E+ AY   +W  S +TL    QV  +  GG  ++ GQ
Sbjct:   382 ANEEEEAEVYSRKLQQVYKLNRKEAAAYTYYVWG-SGLTLL-VVQVSILYYGGHLVISGQ 439

Query:   385 VSPEQLTKYVLYCEWLIYATWRMVDNL-SSLLQSIGATEKVFQLIDLLPSNQFLSEG-VK 442
             ++   L  +++Y E+++      V ++ S L+Q +GA EKVF+ ID  P+   + +G + 
Sbjct:   440 MTSGNLISFIIY-EFVLGDCMESVGSVYSGLMQGVGAAEKVFEFIDRQPT--MVHDGNLA 496

Query:   443 LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502
              +RL G V F N++F Y +RP   +L +V  ++   +V A+VG SGSGKS+ VN+L   Y
Sbjct:   497 PERLEGRVDFENVTFTYRTRPHTQVLQNVSFSLSPGKVTALVGPSGSGKSSCVNILENFY 556

Query:   503 EPSDG 507
              P +G
Sbjct:   557 -PLEG 560

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0015440 "peptide-transporting ATPase activity" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E2R807 ABCB9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 493 (178.6 bits), Expect = 3.3e-46, P = 3.3e-46
 Identities = 120/365 (32%), Positives = 205/365 (56%)

Query:   148 EITMPRILAEAVFSAQREEAMV-FHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRL 206
             E  +P     A+     +++M  F  +   + LL + S   +G+R G F++    L  RL
Sbjct:   202 ETFLPYYTGRAIDGIVIQKSMEQFSTAVIVMCLLAIGSSFAAGIRGGIFTLIFARLNIRL 261

Query:   207 RETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINL 266
             R  L+ +L+ Q++ FFD    G L SRLT+D   +S+++  +IN+ LRN+++  G  + +
Sbjct:   262 RNRLFRSLVSQEMSFFDENRTGDLISRLTSDTTMVSDLVSQNINIFLRNTVKVTGVVVFM 321

Query:   267 LTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVY 326
              +LSW L+L   +    + ++  +YG+Y KR S   Q   A A++ A+ET+  M+TVR +
Sbjct:   322 FSLSWQLSLVTFMGFPIIMMVSDIYGKYYKRLSKEVQNALARASSTAEETISAMKTVRSF 381

Query:   327 GTEEKELGRYKIWLEKLAFIRIRESMAYG--LWNMSFITLYRSTQVMAVLLGGMSIMIGQ 384
               EE+E   Y   L+++  +  +E+ AY   +W  S +TL    QV  +  GG  ++ GQ
Sbjct:   382 ANEEEEAEVYSRKLQQVYKLNRKEAAAYTYYVWG-SGLTLL-VVQVSILYYGGHLVISGQ 439

Query:   385 VSPEQLTKYVLYCEWLIYATWRMVDNL-SSLLQSIGATEKVFQLIDLLPSNQFLSEG-VK 442
             ++   L  +++Y E+++      V ++ S L+Q +GA EKVF+ ID  P+   + +G + 
Sbjct:   440 MTSGNLISFIIY-EFVLGDCMESVGSVYSGLMQGVGAAEKVFEFIDRQPT--MVHDGNLA 496

Query:   443 LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502
              +RL G V F N++F Y +RP   +L +V  ++   +V A+VG SGSGKS+ VN+L   Y
Sbjct:   497 PERLEGRVDFENVTFTYRTRPHTQVLQNVSFSLSPGKVTALVGPSGSGKSSCVNILENFY 556

Query:   503 EPSDG 507
              P +G
Sbjct:   557 -PLEG 560

GO:0005524 "ATP binding" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9NP78 ABCB9 "ATP-binding cassette sub-family B member 9" [Homo sapiens (taxid:9606)]

 Score = 489 (177.2 bits), Expect = 3.5e-46, P = 3.5e-46
 Identities = 120/367 (32%), Positives = 203/367 (55%)

Query:   148 EITMPRILAEAVFSAQREEAM-VFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRL 206
             E  +P     A+     +++M  F  +   + LL + S   +G+R G F++    L  RL
Sbjct:   202 ETFLPYYTGRAIDGIVIQKSMDQFSTAVVIVCLLAIGSSFAAGIRGGIFTLIFARLNIRL 261

Query:   207 RETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINL 266
             R  L+ +L+ Q+  FFD    G L SRLT+D   +S+++  +IN+ LRN+++  G  + +
Sbjct:   262 RNCLFRSLVSQETSFFDENRTGDLISRLTSDTTMVSDLVSQNINVFLRNTVKVTGVVVFM 321

Query:   267 LTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVY 326
              +LSW L+L   +    + ++ ++YG+Y KR S   Q   A A+N A+ET+  M+TVR +
Sbjct:   322 FSLSWQLSLVTFMGFPIIMMVSNIYGKYYKRLSKEVQNALARASNTAEETISAMKTVRSF 381

Query:   327 GTEEKELGRYKIWLEKLAFIRIRESMAYG--LWNMSFITLYRSTQVMAVLLGGMSIMIGQ 384
               EE+E   Y   L+++  +  +E+ AY   +W  S +TL    QV  +  GG  ++ GQ
Sbjct:   382 ANEEEEAEVYLRKLQQVYKLNRKEAAAYMYYVWG-SGLTLL-VVQVSILYYGGHLVISGQ 439

Query:   385 VSPEQLTKYVLYCEWLIYATWRMVDNL-SSLLQSIGATEKVFQLIDLLPSNQFLSEG-VK 442
             ++   L  +++Y E+++      V ++ S L+Q +GA EKVF+ ID  P+   + +G + 
Sbjct:   440 MTSGNLIAFIIY-EFVLGDCMESVGSVYSGLMQGVGAAEKVFEFIDRQPT--MVHDGSLA 496

Query:   443 LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502
                L G V F N++F Y +RP   +L +V  ++   +V A+VG SGSGKS+ VN+L   Y
Sbjct:   497 PDHLEGRVDFENVTFTYRTRPHTQVLQNVSFSLSPGKVTALVGPSGSGKSSCVNILENFY 556

Query:   503 EPSDGQV 509
                 G+V
Sbjct:   557 PLEGGRV 563

GO:0015031 "protein transport" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IDA

GO:0001916 "positive regulation of T cell mediated cytotoxicity" evidence=IBA

GO:0005743 "mitochondrial inner membrane" evidence=IRD

GO:0005886 "plasma membrane" evidence=IBA

GO:0015421 "oligopeptide-transporting ATPase activity" evidence=IBA

GO:0042288 "MHC class I protein binding" evidence=IBA

GO:0042605 "peptide antigen binding" evidence=IBA

GO:0042825 "TAP complex" evidence=IBA

GO:0046978 "TAP1 binding" evidence=IBA

GO:0046979 "TAP2 binding" evidence=IBA

GO:0046980 "tapasin binding" evidence=IBA

GO:0055085 "transmembrane transport" evidence=IBA

GO:0016021 "integral to membrane" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA;IPI

GO:0015440 "peptide-transporting ATPase activity" evidence=IDA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IDA

GO:0015833 "peptide transport" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

UNIPROTKB|Q6P2Q0 ABCB9 "ATP-binding cassette sub-family B member 9" [Homo sapiens (taxid:9606)]

 Score = 489 (177.2 bits), Expect = 3.6e-46, P = 3.6e-46
 Identities = 120/367 (32%), Positives = 203/367 (55%)

Query:   148 EITMPRILAEAVFSAQREEAM-VFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRL 206
             E  +P     A+     +++M  F  +   + LL + S   +G+R G F++    L  RL
Sbjct:   202 ETFLPYYTGRAIDGIVIQKSMDQFSTAVVIVCLLAIGSSFAAGIRGGIFTLIFARLNIRL 261

Query:   207 RETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINL 266
             R  L+ +L+ Q+  FFD    G L SRLT+D   +S+++  +IN+ LRN+++  G  + +
Sbjct:   262 RNCLFRSLVSQETSFFDENRTGDLISRLTSDTTMVSDLVSQNINVFLRNTVKVTGVVVFM 321

Query:   267 LTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVY 326
              +LSW L+L   +    + ++ ++YG+Y KR S   Q   A A+N A+ET+  M+TVR +
Sbjct:   322 FSLSWQLSLVTFMGFPIIMMVSNIYGKYYKRLSKEVQNALARASNTAEETISAMKTVRSF 381

Query:   327 GTEEKELGRYKIWLEKLAFIRIRESMAYG--LWNMSFITLYRSTQVMAVLLGGMSIMIGQ 384
               EE+E   Y   L+++  +  +E+ AY   +W  S +TL    QV  +  GG  ++ GQ
Sbjct:   382 ANEEEEAEVYLRKLQQVYKLNRKEAAAYMYYVWG-SGLTLL-VVQVSILYYGGHLVISGQ 439

Query:   385 VSPEQLTKYVLYCEWLIYATWRMVDNL-SSLLQSIGATEKVFQLIDLLPSNQFLSEG-VK 442
             ++   L  +++Y E+++      V ++ S L+Q +GA EKVF+ ID  P+   + +G + 
Sbjct:   440 MTSGNLIAFIIY-EFVLGDCMESVGSVYSGLMQGVGAAEKVFEFIDRQPT--MVHDGSLA 496

Query:   443 LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502
                L G V F N++F Y +RP   +L +V  ++   +V A+VG SGSGKS+ VN+L   Y
Sbjct:   497 PDHLEGRVDFENVTFTYRTRPHTQVLQNVSFSLSPGKVTALVGPSGSGKSSCVNILENFY 556

Query:   503 EPSDGQV 509
                 G+V
Sbjct:   557 PLEGGRV 563

GO:0016021 "integral to membrane" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8RY46	AB26B_ARATH	No assigned EC number	0.5541	0.9196	0.67	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	510
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	7e-79
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	3e-58
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	1e-50
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	3e-48
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	3e-26
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	2e-25
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	3e-22
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	3e-21
pfam00664	274	pfam00664, ABC_membrane, ABC transporter transmemb	3e-19
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	7e-19
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	7e-19
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	1e-17
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	2e-17
COG5265	497	COG5265, ATM1, ABC-type transport system involved	4e-16
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	1e-15
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	3e-15
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	4e-15
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	1e-14
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	2e-14
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	7e-14
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	7e-14
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	1e-13
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	1e-13
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	2e-13
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	3e-13
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	2e-12
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	2e-12
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	3e-12
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	3e-12
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	1e-11
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	2e-11
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	2e-11
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	2e-11
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	2e-11
COG4987	573	COG4987, CydC, ABC-type transport system involved	3e-11
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	4e-11
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	6e-11
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	6e-11
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	8e-11
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	1e-10
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	1e-10
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	1e-10
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	2e-10
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	2e-10
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	3e-10
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	5e-10
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	9e-10
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	9e-10
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	1e-09
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	3e-09
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	3e-09
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	3e-09
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	3e-09
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	3e-09
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	3e-09
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	4e-09
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	4e-09
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	5e-09
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	5e-09
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	5e-09
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	6e-09
COG4615	546	COG4615, PvdE, ABC-type siderophore export system,	6e-09
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	1e-08
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	1e-08
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	1e-08
COG4988	559	COG4988, CydD, ABC-type transport system involved	2e-08
COG1123	539	COG1123, COG1123, ATPase components of various ABC	2e-08
COG1123	539	COG1123, COG1123, ATPase components of various ABC	2e-08
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	2e-08
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	3e-08
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	3e-08
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	5e-08
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	5e-08
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	6e-08
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	7e-08
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	9e-08
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	9e-08
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	1e-07
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	1e-07
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	1e-07
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	1e-07
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	2e-07
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	2e-07
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	2e-07
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	2e-07
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	2e-07
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	2e-07
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	2e-07
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	3e-07
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	3e-07
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	3e-07
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	4e-07
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	4e-07
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	4e-07
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	4e-07
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	5e-07
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	8e-07
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	8e-07
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	1e-06
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	1e-06
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	1e-06
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	1e-06
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	2e-06
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	2e-06
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	2e-06
cd03369	207	cd03369, ABCC_NFT1, ATP-binding cassette domain 2	2e-06
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	2e-06
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	2e-06
PRK10522	547	PRK10522, PRK10522, multidrug transporter membrane	3e-06
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	3e-06
TIGR01194	555	TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo	3e-06
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	4e-06
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	4e-06
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	4e-06
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	4e-06
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	6e-06
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	6e-06
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	6e-06
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	6e-06
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	1e-05
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	1e-05
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	1e-05
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	1e-05
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	1e-05
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	1e-05
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	1e-05
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	2e-05
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	2e-05
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	2e-05
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	2e-05
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	2e-05
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	3e-05
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	3e-05
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	4e-05
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	4e-05
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	4e-05
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	5e-05
PRK13545	549	PRK13545, tagH, teichoic acids export protein ATP-	5e-05
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	1e-04
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	1e-04
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	1e-04
COG4598	256	COG4598, HisP, ABC-type histidine transport system	1e-04
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	2e-04
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	2e-04
smart00382	148	smart00382, AAA, ATPases associated with a variety	2e-04
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	2e-04
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	2e-04
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	2e-04
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	3e-04
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	3e-04
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	3e-04
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	3e-04
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	3e-04
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	3e-04
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	3e-04
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	4e-04
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	4e-04
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	5e-04
PRK11308	327	PRK11308, dppF, dipeptide transporter ATP-binding	5e-04
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	5e-04
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	5e-04
COG4133	209	COG4133, CcmA, ABC-type transport system involved	5e-04
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	6e-04
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	6e-04
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	6e-04
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	7e-04
cd03291	282	cd03291, ABCC_CFTR1, ATP-binding cassette domain o	7e-04
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	7e-04
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	8e-04
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	8e-04
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	8e-04
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	9e-04
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	9e-04
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	0.001
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	0.001
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	0.001
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	0.001
CHL00131	252	CHL00131, ycf16, sulfate ABC transporter protein;	0.001
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	0.001
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	0.001
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	0.001
COG2401	593	COG2401, COG2401, ABC-type ATPase fused to a predi	0.001
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	0.001
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	0.002
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	0.002
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	0.002
PRK15112	267	PRK15112, PRK15112, antimicrobial peptide ABC syst	0.002
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	0.002
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	0.002
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	0.002
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	0.002
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	0.002
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	0.002
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	0.002
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	0.002
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	0.003
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	0.003
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	0.003
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	0.003
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	0.003
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	0.004
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	0.004
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	0.004
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	0.004
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	0.004
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	0.004
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	0.004
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	0.004
PRK15079	331	PRK15079, PRK15079, oligopeptide ABC transporter A	0.004

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score =  260 bits (666), Expect = 7e-79
 Identities = 139/395 (35%), Positives = 219/395 (55%), Gaps = 10/395 (2%)

Query: 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPR---ILAEAVFSAQREEAMVFHKSSRF 176
           L R+  L GRD   ++ A   L ++++ E+ +P     + + +   +   A     +  F
Sbjct: 149 LFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPA--LASAIFF 206

Query: 177 LVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTA 236
           + LL + S + +GLR G F+     +  R+RE L+ +LL QD+ FFD    G LTSRL++
Sbjct: 207 MCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSS 266

Query: 237 DCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQK 296
           D Q +S  +  ++N++LRN +   G    +L LS  LT+  L+    + +   V+G+  +
Sbjct: 267 DTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQ 326

Query: 297 RASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG- 355
             S   QE  A AN VA+E L  MRTVR +  EE E  R+K  LE+   +  R+++AY  
Sbjct: 327 LLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAG 386

Query: 356 -LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSL 414
            LW  S + +    QV+ +  GG  ++ G+VS   L  ++LY E L  A   +    S +
Sbjct: 387 YLWTTSVLGML--IQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGM 444

Query: 415 LQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLT 474
           +Q++GA+EKVF+ +D  P+   L+  +    L G ++F ++SF YP+RP VP+L  +  T
Sbjct: 445 MQAVGASEKVFEYLDRKPNIP-LTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFT 503

Query: 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +   EVVA+VG SGSGKST   LL  LY+P+ GQV
Sbjct: 504 LHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV 538

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score =  202 bits (515), Expect = 3e-58
 Identities = 110/393 (27%), Positives = 201/393 (51%), Gaps = 7/393 (1%)

Query: 117 WIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRF 176
              L R+   +     ++L+A+  L+++A+  + +P ++   + +   +   +       
Sbjct: 1   LSLLRRLLKYLKY--KLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLL 58

Query: 177 LVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTA 236
           L+L  +  G+   L+S   S     +V  LR  L+  LL   + FFD    G L SRLT 
Sbjct: 59  LLLALL-GGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTN 117

Query: 237 DCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQK 296
           D + +SN++   + ++  + L   G+ + L +LSW L L  LLI   L++++S+  +  +
Sbjct: 118 DVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSR 177

Query: 297 RASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGL 356
           + S   +E     N    E+L  +R ++ +G E++EL R++   E+L    +R S    L
Sbjct: 178 KLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEAL 237

Query: 357 WNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQ 416
                + L     V+ + LGG  ++ G ++   L  ++LY   L+    ++ + +S L +
Sbjct: 238 LAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQR 297

Query: 417 SIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIE 476
           +  A E++F+L+D     +       L+  +G ++F N+SF YP +   P+L  +  +IE
Sbjct: 298 ASAAAERLFELLDE--EPEVEDPPDPLKDTIGSIEFENVSFSYPGKK--PVLKDISFSIE 353

Query: 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
             E VAIVG SGSGKST + LLLRLY+P+ G++
Sbjct: 354 PGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEI 386

Length = 567

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score =  181 bits (461), Expect = 1e-50
 Identities = 108/397 (27%), Positives = 200/397 (50%), Gaps = 8/397 (2%)

Query: 118 IALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMP---RILAEAVFSAQREEAMVFHKSS 174
             L+ +W  +   +  VL A+ +L++ A + +++P   R++ +  FS      +  ++  
Sbjct: 4   RPLAALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLL--NRYF 61

Query: 175 RFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRL 234
            FL+++ +   + +  R    +     +V  +R  +++ L+     FFD    G + SRL
Sbjct: 62  AFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRL 121

Query: 235 TADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQY 294
           T D   L +VIG+ ++M LRN+L   G  I +   S  LT   LL    + + + ++G+ 
Sbjct: 122 TTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRR 181

Query: 295 QKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAY 354
            ++ S  +Q+  A A + A ETL  +RTV+ +G E+ E  R+   +EK A+   R+ +  
Sbjct: 182 VRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEK-AYEAARQRIRT 240

Query: 355 GLWNMSF-ITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSS 413
                +  I L     V  + +G   ++ G++S   L ++V Y   +  +   + +    
Sbjct: 241 RALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGE 300

Query: 414 LLQSIGATEKVFQLIDLLPSNQFLSEGVKL-QRLMGHVQFVNISFHYPSRPTVPILNHVC 472
           L ++ GA E++ +L+   P  +  +    L   L G ++F  ++F YP+RP  P L+ + 
Sbjct: 301 LQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLN 360

Query: 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           LT+   E VA+VG SG+GKST   LLLR Y+P  G++
Sbjct: 361 LTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI 397

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score =  174 bits (444), Expect = 3e-48
 Identities = 108/394 (27%), Positives = 193/394 (48%), Gaps = 12/394 (3%)

Query: 122 RMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAV---FSAQREEAMVFHKSSRFLV 178
           R+W+ +   K  +++A  ++I+ A +E T+  +L   +   F  +    + +      ++
Sbjct: 4   RLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWW--VPLVVI 61

Query: 179 LLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADC 238
            L V  GI S + +   S  +  +V+ +R  ++  LL   V FFD +  G L SR+T D 
Sbjct: 62  GLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDS 121

Query: 239 QRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRA 298
           +++++   +   +++R +L   G FI LL  SW LTL  +++   LSI++    +  +R 
Sbjct: 122 EQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRI 181

Query: 299 SVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWN 358
           S   Q        VA+ETL   R V+++G +  E  R+     +   + ++ + A  + +
Sbjct: 182 SKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSI-S 240

Query: 359 MSFITLYRSTQVMAVLLGGMSI-MIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQS 417
                L  S  +  VL   +     G ++    T ++      +    + + N+++ +Q 
Sbjct: 241 SPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFIT-AMIALIRPLKSLTNVNAPMQR 299

Query: 418 -IGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIE 476
            + A E +F L+D  P     +    ++R  G V+F N++F YP R   P L+ + L IE
Sbjct: 300 GLAAAESLFTLLDSPPEKD--TGTRAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIE 356

Query: 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510
             E VA+VG SGSGKST VNL+ R YEP  GQ+ 
Sbjct: 357 PGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL 390

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score =  112 bits (281), Expect = 3e-26
 Identities = 113/429 (26%), Positives = 197/429 (45%), Gaps = 62/429 (14%)

Query: 112 KPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITM-----PRILAEAVFSAQREE 166
           K ++ W    R+W  I   K  ++VA  +LI+ A S+  M     P +L +    A R  
Sbjct: 5   KDLSTWQTFRRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKP-LLDDGFGKADRS- 62

Query: 167 AMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEA 226
             V       ++ L +  GI S + S C S  +  +V  +R  L+  ++   V FFD ++
Sbjct: 63  --VLKWMPLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQS 120

Query: 227 VGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSI 286
            G L SR+T D +++++     +  ++R      G FI +   SW L+L  ++I   +SI
Sbjct: 121 TGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSI 180

Query: 287 IVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLA-F 345
            + V  +  +  S   Q         A++ L   + V ++G +E E  R+    +K++  
Sbjct: 181 AIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRF----DKVSNR 236

Query: 346 IRIRESM----AYGLWN----------MSFITLYRST--QVMAVLLGG-----MSIMIGQ 384
           +R ++ M    A  + +          ++F+ LY ++   VM  L  G      S MI  
Sbjct: 237 MR-QQGMKMVSASSISDPIIQLIASLALAFV-LYAASFPSVMDTLTAGTITVVFSSMIAL 294

Query: 385 VSP-EQLTKYVLYCEWLIYATWRMVDNLSSLLQS-IGATEKVFQLIDLLPSNQFLSEGV- 441
           + P + LT                  N+++  Q  + A + +F ++DL    Q   EG  
Sbjct: 295 MRPLKSLT------------------NVNAQFQRGMAACQTLFAILDL---EQEKDEGKR 333

Query: 442 KLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501
            ++R  G ++F N++F YP +   P L ++   I A + VA+VG SGSGKST  NLL R 
Sbjct: 334 VIERAKGDIEFRNVTFTYPGKEV-PALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRF 392

Query: 502 YEPSDGQVC 510
           Y+  +G++ 
Sbjct: 393 YDIDEGEIL 401

Length = 582

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score =  110 bits (276), Expect = 2e-25
 Identities = 91/406 (22%), Positives = 171/406 (42%), Gaps = 33/406 (8%)

Query: 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPR----ILAEAVFSAQREEAMVFHKSSR 175
           LS    L+ + + ++   + + ++  +  +  P     ++ + +  A R    V    + 
Sbjct: 142 LSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVL---AI 198

Query: 176 FLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVY-----FFDTEAVGGL 230
            L+L  +   +   LR+         L KRL     S   F+ +      +F+  +VG +
Sbjct: 199 GLLLAALFEALLRLLRT----YLIAHLGKRLD-LELSGRFFRHLLRLPLSYFEKRSVGEI 253

Query: 231 TSRLTADCQRLSNVI----GNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSI 286
            SR+      L  +     G+ + +I+ + L        +   SW LTL  L       +
Sbjct: 254 ISRVRE----LEQIREFLTGSILTLII-DLLFALIFLAVMFLYSWKLTLIVLAAIPLNVL 308

Query: 287 IVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLA-F 345
           I  ++    +R +    E +A   +   ET+  + TV+    E +       W  +LA  
Sbjct: 309 ITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPR---FRSQWDNRLAKQ 365

Query: 346 IRIRESMAY-GLWNMSFITLYRSTQVMAVL-LGGMSIMIGQVSPEQLTKYVLYCEWLIYA 403
           + I        L   +  +L +    + +L  G + ++ G+++  QL  + +   + I  
Sbjct: 366 VNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISP 425

Query: 404 TWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRP 463
             R+    +   Q+  A E++  ++D  P  +     + L +L G ++F N+SF Y    
Sbjct: 426 ITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDD 485

Query: 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
             P+L  + L I   E VAIVG SGSGKST + LLL LY+P  G++
Sbjct: 486 -PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRI 530

Length = 709

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 95.3 bits (238), Expect = 3e-22
 Identities = 33/60 (55%), Positives = 44/60 (73%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           ++F N+SF YPSRP VPIL  + LTI   + VA+VG SG GKST V+LL R Y+P+ G++
Sbjct: 1   IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 90.1 bits (225), Expect = 3e-21
 Identities = 35/61 (57%), Positives = 45/61 (73%), Gaps = 1/61 (1%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           ++F N+SF YP RP  P+L  V LTI+  E VAIVG SGSGKST + LLLRLY+P+ G++
Sbjct: 1   IEFKNVSFSYPGRP-KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59

Query: 510 C 510
            
Sbjct: 60  L 60

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region

 Score = 87.7 bits (218), Expect = 3e-19
 Identities = 69/268 (25%), Positives = 122/268 (45%), Gaps = 7/268 (2%)

Query: 134 VLVAVASLIVAAVSEITMPRILA--EAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLR 191
           +L+A+  LI+A  + +  P +L            +       S  ++L+ V       L+
Sbjct: 1   LLIAILLLILAGATALVFPLLLGRFLDSLIDGNGDERSS-LISLAILLIAVGVLQGLLLQ 59

Query: 192 SG--CFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDI 249
                       + KRL   L   +L   + FFDT +VG LTSRLT D  ++ + +G+ +
Sbjct: 60  GSFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKL 119

Query: 250 NMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVS-VYGQYQKRASVLTQECNAH 308
            +  ++     G FI +    W LTL  LL    L I++S V  +  ++ +   Q+  A 
Sbjct: 120 GLFFQSLATVVGGFIVMFYYGWKLTL-VLLAILPLLILLSAVLAKKLRKLNRKEQKAYAK 178

Query: 309 ANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRST 368
           A +VA+E+L  +RTV+ +G EE EL RY   LE      I++++  GL       +   +
Sbjct: 179 AGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLS 238

Query: 369 QVMAVLLGGMSIMIGQVSPEQLTKYVLY 396
             +A+  G   ++ G +S   +  ++  
Sbjct: 239 YALALWFGAYLVISGGLSVGTVFAFLSL 266

This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 85.4 bits (212), Expect = 7e-19
 Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           V+F N++F YP     P+L  + L I A E VA+VG SGSGKST VNL+ R Y+   G++
Sbjct: 1   VEFKNVTFRYPGDGP-PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59

Query: 510 C 510
            
Sbjct: 60  L 60

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 85.2 bits (211), Expect = 7e-19
 Identities = 33/66 (50%), Positives = 41/66 (62%)

Query: 444 QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503
             L G V+F N++F YP+RP   +L  V  T+   EV A+VG SGSGKST V LL   Y+
Sbjct: 6   DHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ 65

Query: 504 PSDGQV 509
           P  GQV
Sbjct: 66  PQGGQV 71

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 85.1 bits (211), Expect = 1e-17
 Identities = 93/321 (28%), Positives = 152/321 (47%), Gaps = 26/321 (8%)

Query: 202 LVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSL-QGA 260
           L   LRE  Y  L  Q   F+     G L +R T D  R+    G  + + L +SL  G 
Sbjct: 67  LAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGV-LTLVDSLVMGC 125

Query: 261 GAFINLLT-LSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCM 319
              I + T +SW LTL ALL    ++I++  YG        L Q   +  N+  QE+L  
Sbjct: 126 AVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTS 185

Query: 320 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSF-ITLYRSTQVMAVLL--G 376
           +R ++ +G E+++   +       A    +++M     +  F  T+Y +   MA LL  G
Sbjct: 186 IRMIKAFGLEDRQSALF----AADAEDTGKKNMRVARIDARFDPTIYIAIG-MANLLAIG 240

Query: 377 GMSIMI--GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSI----GATEKVFQLIDL 430
           G S M+  G ++  QLT +V+Y   +I   W M+  L+ +   +     A  ++  ++  
Sbjct: 241 GGSWMVVNGSLTLGQLTSFVMYLGLMI---WPML-ALAWMFNIVERGSAAYSRIRAMLAE 296

Query: 431 LPSNQFLSEGVKLQRLMGHVQFVNI-SFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGS 489
            P  +  SE V   R  G +  VNI  F YP     P L +V  T++  +++ I G +GS
Sbjct: 297 APVVKDGSEPVPEGR--GELD-VNIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGS 352

Query: 490 GKSTFVNLLLRLYEPSDGQVC 510
           GKST ++L+ R ++ S+G + 
Sbjct: 353 GKSTLLSLIQRHFDVSEGDIR 373

Length = 569

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 85.9 bits (212), Expect = 2e-17
 Identities = 90/366 (24%), Positives = 161/366 (43%), Gaps = 59/366 (16%)

Query: 177 LVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTA 236
           LVL+ +   I S + S C  +    ++K L+     ++ +QD  F D      LTS L  
Sbjct: 103 LVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDF 162

Query: 237 DCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSF-----LSIIVSVY 291
             ++++  IG     I   +    G +I  L  +  LTL   + C F       +I +  
Sbjct: 163 YLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLC--ITCVFPLIYICGVICNKK 220

Query: 292 GQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKI-------WLEKLA 344
            +  K+ S+L    N +  ++ +E L  +RTV  Y  E+  L ++ +       ++ K  
Sbjct: 221 VKINKKTSLLY---NNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKAN 277

Query: 345 FIR----------IRESMAYGLWNMSFITL-----------YRSTQVMAVLLGGMSIMIG 383
           F+           I  S A+G W  + I +           +    V+++LLG +  M  
Sbjct: 278 FMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMF- 336

Query: 384 QVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKL 443
                 LT               ++ N++  ++S+ AT  ++++I+  P  +   +G KL
Sbjct: 337 -----MLTI--------------ILPNITEYMKSLEATNSLYEIINRKPLVENNDDGKKL 377

Query: 444 QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503
           + +   +QF N+ FHY +R  V I   +  T+   +  A VG SG GKST + L+ RLY+
Sbjct: 378 KDIK-KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD 436

Query: 504 PSDGQV 509
           P++G +
Sbjct: 437 PTEGDI 442

Length = 1466

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 80.5 bits (199), Expect = 4e-16
 Identities = 65/248 (26%), Positives = 109/248 (43%), Gaps = 28/248 (11%)

Query: 274 TLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKEL 333
           TL  +++    ++IVS +    +R        ++ AN  A ++L    TV+ +G EE E 
Sbjct: 89  TLVTVILYLLFTVIVSDWRTDFRRLMN---NADSDANAKAIDSLLNFETVKYFGNEEYEA 145

Query: 334 GRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKY 393
            RY   LE      I+  ++  + N     ++ +   + + +  + +  GQ++   L   
Sbjct: 146 VRYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNV 205

Query: 394 VLYCEWLIYATWRMVDNLSSLLQSIG-ATEKVFQLI-------DLLPSNQFLSEGVKLQR 445
                         +  LS  L  +G +  ++ Q +       DLL     +S+      
Sbjct: 206 NAL-----------LFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPP 254

Query: 446 LM----GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501
           L     G V F+N+SF Y  R   PILN +  TI   + VAIVG SG+GKST + LL R 
Sbjct: 255 LWPVRLGAVAFINVSFAYDPRR--PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRF 312

Query: 502 YEPSDGQV 509
           Y+ + G +
Sbjct: 313 YDVNSGSI 320

Length = 497

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score = 79.6 bits (197), Expect = 1e-15
 Identities = 103/423 (24%), Positives = 155/423 (36%), Gaps = 56/423 (13%)

Query: 112 KPITVWIALSRMWNLIGRD-KWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVF 170
           K + +   L        RD   I+ + +   ++  +  I    ++  A+  A R   +  
Sbjct: 119 KALGLRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQI 178

Query: 171 HKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSA---------LLFQDVYF 221
                 L LL    G      +  F +A  + V RL ET   A         LL   V F
Sbjct: 179 -----ALALLAAAVG------AAAFQLAQSLAVLRL-ETRMDASLQAAVWDRLLRLPVSF 226

Query: 222 FDTEAVGGLTSRLTADCQ---RLSNVIGNDINMILRNSLQGAGAFINLLTL---SWPLTL 275
           F   + G L SR     Q    LS          L   L G  A +NL  +   SW L L
Sbjct: 227 FRQYSTGDLASRAMGISQIRRILSGST-------LTTLLSGIFALLNLGLMFYYSWKLAL 279

Query: 276 SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGR 335
            A+ +      +  V G  Q R      E +   + +  + +  +  +RV G E +   R
Sbjct: 280 VAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFAR 339

Query: 336 Y------KIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQV--SP 387
           +      +  LE L+  RI   +        F  +       A L      ++G    S 
Sbjct: 340 WAKLFSRQRKLE-LSAQRIENLLT------VFNAVL-PVLTSAALFAAAISLLGGAGLSL 391

Query: 388 EQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLM 447
                +         A  ++ + L S+L  I   E+   +++ LP            +L 
Sbjct: 392 GSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVD--EAKTDPGKLS 449

Query: 448 GHVQFVNISFHY-PSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
           G ++   ++F Y P  P   IL+ V L IE  E VAIVG SGSGKST + LLL    P  
Sbjct: 450 GAIEVDRVTFRYRPDGP--LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPES 507

Query: 507 GQV 509
           G V
Sbjct: 508 GSV 510

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 74.5 bits (184), Expect = 3e-15
 Identities = 32/62 (51%), Positives = 43/62 (69%), Gaps = 1/62 (1%)

Query: 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
           G ++F N+SF YP++   P L++V LTI A E VAI+G  GSGKST + LL  LY+P+ G
Sbjct: 1   GRIEFRNVSFSYPNQEI-PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59

Query: 508 QV 509
            V
Sbjct: 60  SV 61

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 74.2 bits (183), Expect = 4e-15
 Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 2/62 (3%)

Query: 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
           G ++F N++F Y      P+L  +  +I+  E VAIVG +G+GK+T +NLL+R Y+P  G
Sbjct: 1   GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58

Query: 508 QV 509
           Q+
Sbjct: 59  QI 60

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 76.0 bits (188), Expect = 1e-14
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 2/97 (2%)

Query: 414 LLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCL 473
           L Q I +  ++ ++ +  P   F +           +   N+SF YP +P  P+L  + L
Sbjct: 304 LGQVIASARRINEITEQKPEVTFPTTS-TAAADQVSLTLNNVSFTYPDQPQ-PVLKGLSL 361

Query: 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510
            I+A E VA++G +G GKST + LL R ++P  G++ 
Sbjct: 362 QIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEIL 398

Length = 574

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 72.6 bits (179), Expect = 2e-14
 Identities = 29/60 (48%), Positives = 38/60 (63%), Gaps = 2/60 (3%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           ++F N++F Y   P  P+L  V  TI A + VAIVG SGSGKST + LL R Y+ S G +
Sbjct: 1   IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 70.2 bits (173), Expect = 7e-14
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +  N+SF YP     P L+ + LTI+  E V IVG +GSGKST + LL  L  P+ G+V
Sbjct: 1   ELKNLSFSYPDGAR-PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEV 58

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score = 70.6 bits (174), Expect = 7e-14
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 3/63 (4%)

Query: 448 GHVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
           G ++F N+S  Y  RP   P+L ++  +I+  E V IVG +GSGKS+ +  L RL E S 
Sbjct: 1   GDIEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58

Query: 507 GQV 509
           G +
Sbjct: 59  GSI 61

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 73.4 bits (181), Expect = 1e-13
 Identities = 35/69 (50%), Positives = 47/69 (68%), Gaps = 1/69 (1%)

Query: 441 VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 500
           +   RL G ++F N+SF YP + T P L++V LTI   E VAI+G  GSGKST + LLL 
Sbjct: 455 LHRPRLQGEIEFRNVSFAYPGQET-PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLG 513

Query: 501 LYEPSDGQV 509
           LY+P++G V
Sbjct: 514 LYQPTEGSV 522

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 73.2 bits (180), Expect = 1e-13
 Identities = 88/344 (25%), Positives = 155/344 (45%), Gaps = 25/344 (7%)

Query: 177 LVLLCVTSGIFSGLRSGCFS-IANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLT 235
           ++ + +      GLR+  F+ + + + V+ L   LY  LL   + +F++  VG   +R+ 
Sbjct: 185 MLAVAIFEPALGGLRTYLFAHLTSRIDVE-LGARLYRHLLGLPLGYFESRRVGDTVARVR 243

Query: 236 ADCQRLSNVIGNDINMILRNSLQGAGAFINLL-----TLSWPLTLSALLICSFLSIIVSV 290
              Q  + + G+ + ++L   L     F+ ++     TL+  + + +L+  + LS+ V  
Sbjct: 244 ELEQIRNFLTGSALTVVL--DLLFVVVFLAVMFFYSPTLTG-VVIGSLVCYALLSVFVG- 299

Query: 291 YGQYQKRASVLTQ-ECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLA--FIR 347
               +KR  V  + E +A A +   E++  + T++   TE +   R   W  +LA     
Sbjct: 300 -PILRKR--VEDKFERSAAATSFLVESVTGIETIKATATEPQFQNR---WDRQLAAYVAA 353

Query: 348 IRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWR 406
                  G      I L +      +L  G  ++I G +SP QL  + +    +     R
Sbjct: 354 SFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLR 413

Query: 407 MVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHY-PSRPTV 465
           +        Q+  A E++  +++  P+    +    L  L G + F NI F Y P  P  
Sbjct: 414 LAQLWQDFQQTGIALERLGDILNS-PTEPRSAGLAALPELRGAITFENIRFRYAPDSP-- 470

Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
            +L+++ L I+  E + IVG SGSGKST   LL RLY P  GQV
Sbjct: 471 EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQV 514

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score = 72.3 bits (178), Expect = 2e-13
 Identities = 73/311 (23%), Positives = 125/311 (40%), Gaps = 34/311 (10%)

Query: 219 VYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSAL 278
           V FF     G + SR+  +  +++  +   +     +++      + +L     LTL   
Sbjct: 242 VRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTL--- 297

Query: 279 LICSFLSIIVSVYGQYQKRASV-----LTQECNAHANNVAQETLCMMRTVRVYGTEEKEL 333
            I    + I  +  Q   R  V     L Q+       VA   L  + T++  G E    
Sbjct: 298 -IGIAFAAINVLALQLVSRRRVDANRRLQQD-AGKLTGVAISGLQSIETLKASGLESDFF 355

Query: 334 GRYKIWLEKLAFIRIRESMAYGLWNM---SFITLYRSTQVMAVL-LGGMSIMIGQVSPEQ 389
            R+  +  KL    +      G+         TL  S     +L +GG+ +M GQ++   
Sbjct: 356 SRWAGYQAKL----LNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGM 411

Query: 390 LTKYVLYCEWLIYATWRMVDNLSSLLQSI-GATEKVFQLIDLL---PSNQFLSEGVK--- 442
           L  +      L+ +    V+NL     ++      + +L D+L          E      
Sbjct: 412 LVAFQS----LMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAG 467

Query: 443 ---LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 499
                RL G+V+  NI+F Y S    P++ +  LT++  + VA+VG SGSGKST   L+ 
Sbjct: 468 SEPSPRLSGYVELRNITFGY-SPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVA 526

Query: 500 RLYEPSDGQVC 510
            LY+P  G++ 
Sbjct: 527 GLYQPWSGEIL 537

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 71.9 bits (177), Expect = 3e-13
 Identities = 38/141 (26%), Positives = 78/141 (55%), Gaps = 3/141 (2%)

Query: 370 VMAVLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLI 428
           ++A+L+ G +++  GQ+   ++  +V +   LI    ++V  ++ +  +    E+ F++ 
Sbjct: 254 MLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVE 313

Query: 429 DLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSG 488
           D +P  +     + L R+ G V+F ++SF Y +      +  V    +  + VAIVG +G
Sbjct: 314 DAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSR--QGVEDVSFEAKPGQTVAIVGPTG 371

Query: 489 SGKSTFVNLLLRLYEPSDGQV 509
           +GKST +NLL R+++P  G++
Sbjct: 372 AGKSTLINLLQRVFDPQSGRI 392

Length = 588

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 66.3 bits (163), Expect = 2e-12
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 450 VQFVNISFHYPS-RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
           ++  N+S  Y      V  L  + L++E  E VA+VG SG GKST + ++  L  P+ G+
Sbjct: 1   LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60

Query: 509 V 509
           V
Sbjct: 61  V 61

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 68.9 bits (169), Expect = 2e-12
 Identities = 71/311 (22%), Positives = 112/311 (36%), Gaps = 11/311 (3%)

Query: 205 RLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFI 264
            LR  +Y  L  Q +        G L  RL AD   L ++    I       + GA A  
Sbjct: 87  ALRVRVYERLARQALAGRRRLRRGDLLGRLGADVDALQDLYVRVIVPAGVALVVGAAAVA 146

Query: 265 NLLTLSWP--LTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRT 322
            +  LS P  L L+A L+ +   +   V  +  + A                + L     
Sbjct: 147 AIAVLSVPAALILAAGLLLAGF-VAPLVSLRAARAAEQALARLRGELAAQLTDALDGAAE 205

Query: 323 VRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGL-WNMSFITLYR-STQVMAVLLGGMSI 380
           +   G     L + +         R     A       +   L      + A+  GG ++
Sbjct: 206 LVASGALPAALAQVEE--ADRELTRAERRAAAATALGAALTLLAAGLAVLGALWAGGPAV 263

Query: 381 MIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEG 440
             G+++P  L   VL       A   +      L +   A E++ +++D        S  
Sbjct: 264 ADGRLAPVTLAVLVLLPLAAFEAFAALPAAAQQLTRVRAAAERIVEVLDAAGPVAEGSAP 323

Query: 441 VKLQRLMGHVQFV--NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL 498
                 +G       ++S  YP  P  P+L+ V L +   E VAI+G SGSGKST +  L
Sbjct: 324 AAGAVGLGKPTLELRDLSAGYPGAP--PVLDGVSLDLPPGERVAILGPSGSGKSTLLATL 381

Query: 499 LRLYEPSDGQV 509
             L +P  G+V
Sbjct: 382 AGLLDPLQGEV 392

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 64.2 bits (157), Expect = 3e-12
 Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 3/59 (5%)

Query: 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +  N+SF Y  R     L++V LT++A E+VA+VG +GSGKST +  +  L +P+ G++
Sbjct: 1   EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEI 56

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 65.6 bits (161), Expect = 3e-12
 Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 454 NISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           N+S  +P+   +V  L+ V  +I+  E + +VG SGSGKST    +L L +P+ G +
Sbjct: 6   NLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSI 62

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 64.5 bits (158), Expect = 1e-11
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 6/62 (9%)

Query: 454 NISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
           N+  ++P          V  ++ V  +I+  E + +VG SG GKST   L+L L EP+ G
Sbjct: 9   NLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSG 68

Query: 508 QV 509
           ++
Sbjct: 69  EI 70

Length = 268

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 66.3 bits (162), Expect = 2e-11
 Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 5/99 (5%)

Query: 412 SSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHV 471
           S L Q++ A E+VF+L+D  P  Q+ ++   LQ   G +   N+SF Y  R    +L ++
Sbjct: 306 SMLQQAVVAGERVFELMDG-PRQQYGNDDRPLQS--GRIDIDNVSFAY--RDDNLVLQNI 360

Query: 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510
            L++ +   VA+VG +GSGKST  +LL+  Y  ++G++ 
Sbjct: 361 NLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR 399

Length = 592

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 62.2 bits (152), Expect = 2e-11
 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           ++  N+S  Y       +LN V L IEA E+VA++G SGSGKST +  +  L EP  G +
Sbjct: 1   LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 63.4 bits (155), Expect = 2e-11
 Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
           +  ++  N+SF YP R     L  V L IE  E V ++G +GSGKST + LL  L +P+ 
Sbjct: 1   LRMIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTS 58

Query: 507 GQV 509
           G+V
Sbjct: 59  GEV 61

Length = 235

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 66.1 bits (161), Expect = 2e-11
 Identities = 38/141 (26%), Positives = 79/141 (56%), Gaps = 3/141 (2%)

Query: 370 VMAVLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLI 428
           +M +L+ G  ++I G++S  ++  ++ +   LI    +M   ++ + ++    E  F L 
Sbjct: 254 MMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLE 313

Query: 429 DLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSG 488
           D +   +  ++  +L  + G V+F +I+F + +  +   +  V    +A + VAIVG +G
Sbjct: 314 DSVFQREEPADAPELPNVKGAVEFRHITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTG 371

Query: 489 SGKSTFVNLLLRLYEPSDGQV 509
           +GK+T +NLL R+Y+P+ GQ+
Sbjct: 372 AGKTTLINLLQRVYDPTVGQI 392

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 65.4 bits (160), Expect = 3e-11
 Identities = 67/290 (23%), Positives = 113/290 (38%), Gaps = 17/290 (5%)

Query: 228 GGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSII 287
           G L +RL AD   L N+    I   +   +  A   I L   S PL L   LI   L +I
Sbjct: 115 GDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLI 174

Query: 288 VSV--YGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAF 345
           +    Y   +K  + L Q   A  +    + +     + ++G E+      +        
Sbjct: 175 IPTLFYRAGRKFGAHLAQGRAALRSQFT-DWVQGQAELLIFGAEDAYRTALEATEASWLK 233

Query: 346 IRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIY--- 402
            + +++   GL +   + +        +++G +  M  QV    L +       L+    
Sbjct: 234 AQRKQARFTGLSDAILLLIA-----GLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAA 288

Query: 403 ---ATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHY 459
                         L Q I +  ++  ++D  P   F  E  +       ++  N+SF Y
Sbjct: 289 LEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDE--QTATTGQALELRNVSFTY 346

Query: 460 PSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           P + T   L +  LT+   E VAI+G SGSGKST + LL   ++P  G +
Sbjct: 347 PGQQT-KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSI 395

Length = 573

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 62.9 bits (153), Expect = 4e-11
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 3/61 (4%)

Query: 450 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
           + F ++ F Y  +P  P IL+++ L I+  EVV IVG SGSGKST   L+ R Y P +G+
Sbjct: 1   ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58

Query: 509 V 509
           V
Sbjct: 59  V 59

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 60.7 bits (148), Expect = 6e-11
 Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 1/56 (1%)

Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           N+SF YP     P+L +V  +IE  E +AI+G SGSGKST   L+L L  P+ G+V
Sbjct: 5   NVSFRYPGAEP-PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 61.8 bits (151), Expect = 6e-11
 Identities = 30/61 (49%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
           ++  N+S  Y      V  L  V L IEA E VAIVG SGSGKST +NLL  L +P+ G+
Sbjct: 2   IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61

Query: 509 V 509
           V
Sbjct: 62  V 62

Length = 226

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 61.4 bits (150), Expect = 8e-11
 Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 450 VQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
           ++  N+S  Y      V  L  V L+IE  E VAIVG SGSGKST +N+L  L  P+ G+
Sbjct: 1   IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60

Query: 509 V 509
           V
Sbjct: 61  V 61

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 61.8 bits (151), Expect = 1e-10
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510
           N+SF Y  +P   IL+ +  +I   E+  I+G +GSGKST +  L  L +P  G+V 
Sbjct: 7   NLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60

Length = 258

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 454 NISFHYPSRPTV-PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           N+S  Y         LN+V L IE  E + IVG SGSGKST   LL  L +PS G +
Sbjct: 8   NLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSI 64

Length = 252

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 450 VQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
           ++  N+S  +      TV  L+ V L I   E+  I+G SG+GKST + L+  L  P+ G
Sbjct: 2   IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61

Query: 508 QV 509
            V
Sbjct: 62  SV 63

Length = 339

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 59.8 bits (146), Expect = 2e-10
 Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           N+S  Y  R    +L+ + L+IEA E+V I+G +G+GKST +  L  L +PS G++
Sbjct: 4   NLSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEI 56

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 59.3 bits (145), Expect = 2e-10
 Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           N+S  Y  +     L+ + LT+E  E+  ++G +G+GK+T + ++L L +P  G++
Sbjct: 5   NLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 60.3 bits (147), Expect = 3e-10
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
           M  ++   +S  +     V +L  + L++E  E VAI+G SG GKST + L+  L +P+ 
Sbjct: 1   MALLEIEGVSKSFG---GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTS 57

Query: 507 GQV 509
           G+V
Sbjct: 58  GEV 60

Length = 248

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 62.0 bits (150), Expect = 5e-10
 Identities = 23/56 (41%), Positives = 39/56 (69%)

Query: 448  GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503
            G ++ ++++F Y SRP VPI   +  + ++ +  AIVG +GSGKST ++LL+R Y+
Sbjct: 1164 GKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD 1219

Length = 1466

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 60.8 bits (148), Expect = 9e-10
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           ++F  +S  YP R   P L  V  T+   E VA+VG SG+GKST +NLLL   +P++G +
Sbjct: 322 LEFSGVSVAYPGRR--PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI 379

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 58.7 bits (143), Expect = 9e-10
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           ++   ++  +  R    +L  V L +   E++AI+G SGSGKST + L++ L  P  G+V
Sbjct: 1   IELRGLTKSFGGRT---VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 60.5 bits (147), Expect = 1e-09
 Identities = 63/301 (20%), Positives = 126/301 (41%), Gaps = 27/301 (8%)

Query: 221 FFDTEAVGGLTSRLTADCQRLSNVIGN-------DINMILRNSLQGAGAFINLLTLSWPL 273
           FF T   G + SR T D   + + + +       D+ +++   L        L+  +  L
Sbjct: 246 FFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLF-------LVRQNMLL 297

Query: 274 TLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEE--- 330
            L +LL     ++I+ ++ +   + +    + NA  N+   E L  + T++   +E    
Sbjct: 298 FLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERY 357

Query: 331 -KELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQ 389
            K    +  +L K    +  +     +  ++ + L     V+ +  G   +M G+++  Q
Sbjct: 358 SKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLIL----NVVILWTGAYLVMRGKLTLGQ 413

Query: 390 LTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS-EGVKLQRLMG 448
           L  +     + +     ++ NL   LQ+          + L+ S      +  +L  L G
Sbjct: 414 LITFNALLSYFLTPLENII-NLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNG 472

Query: 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
            +   ++S+ Y       IL+ + LTI+ N    IVG+SGSGKST   LL+  ++   G+
Sbjct: 473 DIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGE 530

Query: 509 V 509
           +
Sbjct: 531 I 531

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 58.4 bits (142), Expect = 3e-09
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
           M  ++  N+   + S   +  +N   L IE  E V ++G SG GKST + ++  L EP+ 
Sbjct: 1   MAELELKNVRKSFGSFEVLKDVN---LDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTS 57

Query: 507 GQV 509
           G++
Sbjct: 58  GEI 60

Length = 338

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 3/60 (5%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           ++F N+S  Y ++     ++ V LTIE  E + ++G SGSGK+T + ++ RL EP+ G++
Sbjct: 2   IEFENVSKRYGNKK---AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58

Length = 309

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 56.8 bits (138), Expect = 3e-09
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           ++   +S  Y S   V  L+ + LT+E  E +A++G SG GK+T + L+  L  P  G++
Sbjct: 1   LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           ++  N+SF YP+      L +V   I   E VAI+G +GSGKST   +L  L +P  G++
Sbjct: 8   IKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66

Length = 271

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 57.2 bits (139), Expect = 3e-09
 Identities = 16/59 (27%), Positives = 29/59 (49%)

Query: 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +   ++           L  +   I   E V I+G +G+GKST + L+  +Y+P+ G+V
Sbjct: 26  RLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84

Length = 249

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +   N+SF YP +    +L ++ L ++  E +A++G SGSGKST + LL    +P  G++
Sbjct: 1   LSINNVSFSYPEQEQ-QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 56.8 bits (138), Expect = 4e-09
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +  N+S  YP+      L  V L+I   E VA++G SG+GKST +  L  L EP+ G V
Sbjct: 2   EVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 22/42 (52%), Positives = 29/42 (69%)

Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +N   L +E  E+  I+GLSGSGKST V LL RL EP+ G++
Sbjct: 44  VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEI 85

Length = 386

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           ++  N++  Y        L+ V   +E  E+  ++G +G+GK+T + +L  L +P+ G++
Sbjct: 5   IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62

Length = 293

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 58.8 bits (142), Expect = 5e-09
 Identities = 74/327 (22%), Positives = 137/327 (41%), Gaps = 37/327 (11%)

Query: 204  KRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAF 263
            KRL + + +++L   + FF T   G + +R + D   +   + N +NM +    Q    F
Sbjct: 983  KRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTF 1042

Query: 264  INLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRA-SVLTQECNAHANNVAQ--ETLCMM 320
              + T+S   T+S   I   L +  + Y  YQ  +  V   +    +   AQ  E L  +
Sbjct: 1043 ALIGTVS---TISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGL 1099

Query: 321  RTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSI 380
             ++R Y   +         + K+    +  ++ + L N S     R   +    LGG+ I
Sbjct: 1100 SSIRAYKAYD--------RMAKINGKSMDNNIRFTLANTSS---NRWLTIRLETLGGVMI 1148

Query: 381  -------MIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQ-------SIGATEKVFQ 426
                   ++   + E    +      L+  T  +   LS +L+       S+ + E+V  
Sbjct: 1149 WLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGN 1208

Query: 427  LIDLLPSNQFLSEG---VKLQRLMGHVQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVA 482
             IDL      + E    V      G ++F ++   Y  RP +P +L+ +   +  +E V 
Sbjct: 1209 YIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRY--RPGLPPVLHGLSFFVSPSEKVG 1266

Query: 483  IVGLSGSGKSTFVNLLLRLYEPSDGQV 509
            +VG +G+GKS+ +N L R+ E   G++
Sbjct: 1267 VVGRTGAGKSSMLNALFRIVELEKGRI 1293

Length = 1495

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 54.4 bits (132), Expect = 5e-09
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           ++  N+S  Y  +    +L  + LTI   + + +VG +G+GKST + L+    EP +G V
Sbjct: 1   IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 55.9 bits (135), Expect = 6e-09
 Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           ++F+N++  YP       L+ + ++I A E V +VG SG+GKST + L+ +   P+ G +
Sbjct: 1   IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

 Score = 57.9 bits (140), Expect = 6e-09
 Identities = 76/412 (18%), Positives = 143/412 (34%), Gaps = 65/412 (15%)

Query: 126 LIGR-DKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTS 184
           L+ R ++W  +  +A  + +    I +   + +A+        +V  +    L+L  V+S
Sbjct: 6   LLLRQNRWPFISVMALSLASGALGIGLLAFINQALIETADTSLLVLPEFLGLLLLFMVSS 65

Query: 185 GIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNV 244
            I     +         L     + +    L +     +      L + LT+D + +S  
Sbjct: 66  LISQLGLTTLGQHFIYKLRSEFIKKILDTPLER----IERLGSARLLAGLTSDVRNISFA 121

Query: 245 IGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQE 304
                   L   +Q     +        L+    L+   + I+V+++G +   A V    
Sbjct: 122 F-----SRLPELVQAIILTLGSAAYLAYLSPKMFLLTV-VWIVVTIWGGFVLMARVYKH- 174

Query: 305 CNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLW------- 357
                          M   R   TE+K    Y+  LE    + +    A  +        
Sbjct: 175 ---------------MAAAR--ETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPD 217

Query: 358 ------NMSFITLYRS-----TQVMAVLLGG----MSIMIGQVSPEQLTKYVLYCEWLIY 402
                 ++     +       + +M + L G    +++ +G  S       VL   +L  
Sbjct: 218 AQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRT 277

Query: 403 ATWRMVDNLSSLLQSIGATEKVFQL-----IDLLPSNQFLSEGVKLQRLMGHVQFVNISF 457
                V  L +LL +  A  K+ +L         P  Q   +   L+         N+ F
Sbjct: 278 PLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPRPQAFPDWKTLE-------LRNVRF 330

Query: 458 HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
            Y        +  + LTI+  E+V ++G +GSGKST   LL  LY+P  G++
Sbjct: 331 AYQ--DNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380

Length = 546

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 20/42 (47%), Positives = 28/42 (66%)

Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +N V L +   E+  I+GLSGSGKST +  + RL EP+ G+V
Sbjct: 40  VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKV 81

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 27/55 (49%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 454 NISFHYPS-RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
           +I   YPS    V +L  + L I A E+VAIVG SGSGKST +N+L  L +P+ G
Sbjct: 9   DIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSG 63

Length = 648

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 54.0 bits (131), Expect = 1e-08
 Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           ++   I+  +     V  L+ V L++   EV A++G +G+GKST + +L  LY+P  G++
Sbjct: 1   LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 56.9 bits (138), Expect = 2e-08
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 415 LQSIGATEKVFQLIDL-LPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCL 473
                A +K+F L++  + +     +          +   N+SF YP       L+ + L
Sbjct: 285 AAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPA--LSDLNL 342

Query: 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
           TI+A ++ A+VG SG+GKST +NLLL    P+ G
Sbjct: 343 TIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQG 376

Length = 559

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 56.4 bits (137), Expect = 2e-08
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           V+ + + F       VP +  V   +E  E++ IVG SGSGKST    L+ L  P  G++
Sbjct: 8   VENLTVEFATDGGR-VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGL-LPEGGRI 65

Query: 510 C 510
            
Sbjct: 66  T 66

Length = 539

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 56.4 bits (137), Expect = 2e-08
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 454 NISFHYPSRPT--------VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505
           N+S  Y SR          V  ++ V   +   E + +VG SGSGKST   +L  L  PS
Sbjct: 285 NLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS 344

Query: 506 DGQVC 510
            G + 
Sbjct: 345 SGSII 349

Length = 539

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 54.9 bits (133), Expect = 2e-08
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           ++   ++  +  R    IL+ V L +   E++AI+G SGSGKST + L+L L  P  G++
Sbjct: 9   IEVRGVTKSFGDRV---ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65

Length = 263

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 54.5 bits (132), Expect = 3e-08
 Identities = 20/60 (33%), Positives = 39/60 (65%), Gaps = 3/60 (5%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           ++  N++  Y +RP   +L  + L++E  E+ A++G +G+GKST +  +L L +PS G++
Sbjct: 5   IEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61

Length = 254

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 55.7 bits (135), Expect = 3e-08
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
           M  +   N+S  Y  RP   +L +V LT+   E + +VG +G+GKST + +L    EP  
Sbjct: 1   MSMITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDS 57

Query: 507 GQV 509
           G+V
Sbjct: 58  GEV 60

Length = 530

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 54.0 bits (130), Expect = 5e-08
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
           M  +   ++S  Y  +P    L  V LTI + E+V ++G SG GK+T +NL+     PS 
Sbjct: 1   MCMLNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSR 59

Query: 507 GQV 509
           G +
Sbjct: 60  GSI 62

Length = 259

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           ++  N+S  YP       L  V L I   E+VAI+G SG+GKST +  L  L +P+ G++
Sbjct: 4   IEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61

Length = 258

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 52.6 bits (127), Expect = 6e-08
 Identities = 21/43 (48%), Positives = 30/43 (69%)

Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           IL+ + LTIE  ++ AI+G SGSGKST +N++  L +   GQV
Sbjct: 13  ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQV 55

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 52.8 bits (127), Expect = 7e-08
 Identities = 23/45 (51%), Positives = 30/45 (66%)

Query: 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           + IL  V L ++  E VAIVG SGSGKST + +L  L +PS G+V
Sbjct: 23  LSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEV 67

Length = 228

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 52.7 bits (127), Expect = 9e-08
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           ++F N++  Y        +N++ L I   E + ++G SGSGK+T + ++ RL EP+ G++
Sbjct: 1   IEFENVTKRYGGGK--KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 52.8 bits (128), Expect = 9e-08
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           L+ V  ++   E+  ++G +G+GK+T  NL+     P+ G V
Sbjct: 16  LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSV 57

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 52.5 bits (127), Expect = 1e-07
 Identities = 20/43 (46%), Positives = 27/43 (62%)

Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +L  + L++E  EVV I+G SGSGKST +  L  L EP  G +
Sbjct: 17  VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59

Length = 240

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
              ++  N+S  +        ++ + L I+  E V ++G SG GK+T + ++    +PS 
Sbjct: 3   KPALEIRNVSKSFGD---FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS 59

Query: 507 GQV 509
           G++
Sbjct: 60  GEI 62

Length = 352

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           ++F N+S  YP       L  V   I   E V + G SG+GKST + L+     P+ G++
Sbjct: 2   IRFENVSKAYPGGR--EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59

Length = 223

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 4/102 (3%)

Query: 408 VDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPI 467
           + N    + +  + +++ +L+  LP+    +E + L    G +    ++   P +   PI
Sbjct: 296 IANWKQFVAARQSYKRLNELLAELPAA---AERMPLPAPQGALSVERLTAAPPGQKK-PI 351

Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           L  +   ++A E + I+G SGSGKST   LL+ ++ P+ G V
Sbjct: 352 LKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSV 393

Length = 580

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 8/65 (12%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----P 504
           ++  +++ +Y  +     L  + L I   E+ A++G SG GKST + LL RL +     P
Sbjct: 1   IELRDLNVYYGDKH---ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57

Query: 505 SDGQV 509
            +G+V
Sbjct: 58  DEGEV 62

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510
           +++  Y   P   +L  V   ++  E +AIVG +G+GKST +  +L L +P+ G + 
Sbjct: 4   DLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score = 52.9 bits (128), Expect = 2e-07
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 450 VQFVNISFHYP-SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
           ++  NIS  +P    T+  LN+V L I A E+  ++G SG+GKST +  +  L  P+ G+
Sbjct: 2   IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61

Query: 509 V 509
           V
Sbjct: 62  V 62

Length = 343

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 6/63 (9%)

Query: 454 NISFHYPS------RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
            +S HY             +LN+V L++++ E VA++G SG GKST   LL+ L  PS G
Sbjct: 8   GLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQG 67

Query: 508 QVC 510
            V 
Sbjct: 68  NVS 70

Length = 268

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
           ++  N+S  +      V  L  V L++   E+  I+G SG+GKST +  +  L  P+ G 
Sbjct: 2   IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61

Query: 509 V 509
           V
Sbjct: 62  V 62

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 408 VDNLSSLLQSIGATEKVF----QLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRP 463
           +D      +      + +    +L+   PS       + L    GH+   N++   P   
Sbjct: 274 IDGAIGGWKQFSGARQAYKRLNELLANYPSR---DPAMPLPEPEGHLSVENVTI-VPPGG 329

Query: 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
             P L  +  +++A E +AI+G SGSGKST   L++ ++ P+ G V
Sbjct: 330 KKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV 375

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 17/42 (40%), Positives = 27/42 (64%)

Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +N V L +   E+V ++G +G+GK+T  NL+   Y+PS G V
Sbjct: 20  VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTV 61

Length = 250

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           ++F N+S  YP    V  L+ V L I   E + + G SG+GK+T + LL     PS GQV
Sbjct: 2   IEFHNVSKAYP--GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           ++  N+   +       +L  + LT++  EVV I+G SGSGKST +  +  L EP  G +
Sbjct: 1   IEIKNLHKSFGDFH---VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +Q  N++  Y      P ++ + L +   E+  ++G +G+GK+T + +L     P+ G  
Sbjct: 1   LQIRNLTKTYKKGT-KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 51.4 bits (124), Expect = 4e-07
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +++SF   +   V  ++ V   ++  E++ IVG SGSGKS     ++ L    + ++
Sbjct: 7   LSVSFPTDAG-VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARI 62

Length = 316

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 3/59 (5%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
           ++F N+S H+       +L+++ L I+  EVV I+G SGSGKST +  + +L E + G 
Sbjct: 2   IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGD 57

Length = 240

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 50.6 bits (122), Expect = 4e-07
 Identities = 16/57 (28%), Positives = 25/57 (43%)

Query: 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           + I            L  V   +   E + ++G +G+GKST + LL  +Y P  G V
Sbjct: 23  LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTV 79

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 454 NISFHYP--SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +ISF YP  +      L  V  ++   E VAIVG +GSGKST   LL  L  P  G +
Sbjct: 10  HISFRYPDAATYA---LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64

Length = 279

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 50.2 bits (121), Expect = 5e-07
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 450 VQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
           +   + SF + S    T   L  + L +   E+VAIVG  GSGKS+ ++ LL   E   G
Sbjct: 1   ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60

Query: 508 QVC 510
            V 
Sbjct: 61  SVS 63

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 50.2 bits (121), Expect = 8e-07
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 11/60 (18%)

Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL----YEPSDGQV 509
           N+S     R    +L+ V LT+   EVVAI+G +G+GKST    LLR       P  G+V
Sbjct: 7   NLSVRLGGRT---LLDDVSLTLRPGEVVAILGPNGAGKST----LLRALSGELSPDSGEV 59

Length = 258

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 50.2 bits (120), Expect = 8e-07
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 6/62 (9%)

Query: 454 NISFHYPS------RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
           +++  Y +      +   P+L +V L+IE  E V ++G SG GKST   LLL L +P+ G
Sbjct: 7   DVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQG 66

Query: 508 QV 509
            V
Sbjct: 67  TV 68

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 435 QFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTF 494
           +F   G +L +L+  ++F N+S  Y       +L  +   I+  + +AIVG +G+GKST 
Sbjct: 309 RFPPPGKRLGKLV--LEFENVSKGYD--GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTL 364

Query: 495 VNLLLRLYEPSDGQV 509
           + LL     P  G V
Sbjct: 365 LKLLAGELGPLSGTV 379

Length = 530

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 22/42 (52%), Positives = 28/42 (66%)

Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +N   L I   E+  I+GLSGSGKST V +L RL EP+ GQ+
Sbjct: 9   VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI 50

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 23/46 (50%), Positives = 30/46 (65%)

Query: 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
              +L  V L+I   E+VAIVG SGSGKST ++LL  L  P+ G+V
Sbjct: 17  DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEV 62

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           ++  N+S  YP+      L ++ L I   E VAI+G SG+GKST +  + RL EPS G +
Sbjct: 2   LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 50.0 bits (119), Expect = 2e-06
 Identities = 24/37 (64%), Positives = 27/37 (72%)

Query: 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           L IE  E+  I+GLSGSGKST V LL RL EP+ GQV
Sbjct: 49  LAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQV 85

Length = 400

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501
           ++ ++++FH     TV  +  +   IEA E +A+VG SGSGKS     +L L
Sbjct: 9   IRNLSVAFHQEGG-TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGL 59

Length = 534

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 88/340 (25%), Positives = 139/340 (40%), Gaps = 63/340 (18%)

Query: 204  KRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAF 263
            KRL + +  ++L   + FF T  +G + +R   D   +   +   +NM L    Q    F
Sbjct: 986  KRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTF 1045

Query: 264  INLLTLSWPLTLSALLICSFLSIIVSVYGQYQ------KRASVLTQECNAHANNVAQ--E 315
            + +  +S   T+S   I   L +    Y  YQ      KR   +T+     +   AQ  E
Sbjct: 1046 VLIGIVS---TISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITR-----SPVYAQFGE 1097

Query: 316  TLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESM----AYGLWNMSF-----ITLYR 366
             L  + T+R Y              +++A I  R SM     + L NMS      I L  
Sbjct: 1098 ALNGLSTIRAYKA-----------YDRMAEINGR-SMDNNIRFTLVNMSSNRWLAIRLET 1145

Query: 367  STQVMAVLLGGMSIMIGQVSPEQ---------LTKYVLYCEWLIYATWRMVDNLSSLLQ- 416
               +M  L    ++M    +  Q         L  Y L    L+ A  R    L+SL + 
Sbjct: 1146 LGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLR----LASLAEN 1201

Query: 417  SIGATEKVFQLIDLLPSNQFLSEGVKLQR------LMGHVQFVNISFHYPSRPTVP-ILN 469
            S+ A E+V   IDL      + E     R        G ++F ++   Y  RP +P +L+
Sbjct: 1202 SLNAVERVGTYIDLPSEAPLVIEN---NRPPPGWPSSGSIKFEDVVLRY--RPELPPVLH 1256

Query: 470  HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
             +   I  +E V IVG +G+GKS+ +N L R+ E   G++
Sbjct: 1257 GLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRI 1296

Length = 1622

>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 3/63 (4%)

Query: 448 GHVQFVNISFHY-PSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
           G ++  N+S  Y P  P  P+L +V   ++A E + IVG +G+GKST +  L R  E  +
Sbjct: 5   GEIEVENLSVRYAPDLP--PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62

Query: 507 GQV 509
           G++
Sbjct: 63  GKI 65

Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 49.8 bits (120), Expect = 2e-06
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
            IS  +     V  L+ V LT+   EV A++G +G+GKST + +L  +Y P  G++
Sbjct: 13  GISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65

Length = 500

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           NISF Y       IL+ + L + A E++A+ G +G+GK+T   +L  L + S G +
Sbjct: 4   NISFSYKKGTE--ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSI 57

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 452 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
             N++F Y        +  + LTI+  E++ ++G +GSGKST   LL  LY+P  G++
Sbjct: 325 LRNVTFAYQDNGFS--VGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380

Length = 547

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           ++  N+S  +        L+ V L I + E+VA++G SGSGK+T + L+  L  P  G +
Sbjct: 3   IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI 59

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 71/398 (17%), Positives = 148/398 (37%), Gaps = 34/398 (8%)

Query: 131 KWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGL 190
             I   ++A  +   ++ I +   +  A+     EE  +   S      LC+ + +F   
Sbjct: 17  PAITAFSIALGLAGGLAIIALLASINNAI----HEENFLGQGSLFSFGGLCLLALLFRIG 72

Query: 191 RSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDIN 250
                + A + ++  LR  L   +L   +   D      L   LT D  +++  +     
Sbjct: 73  ADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FP 131

Query: 251 MILRNSLQGAGAFINLLTLSWP---LTLSALLICSFLSIIVSVYG-QYQKRASVLTQECN 306
            I             L  LS P   +T+SA++I +   ++  + G ++   A       N
Sbjct: 132 PIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFN 191

Query: 307 AHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRE-SMAYGLWNMSFITLY 365
            H + +A       + ++++G          I   + +   I +  +   L    FI   
Sbjct: 192 EHTHAIAFG----AKELKIHGIRRLSFAHGAI---QESANNIADLHIIEILI---FIAAE 241

Query: 366 RSTQVMAVLLGGMSI----MIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGAT 421
              Q++  LL G ++    M   +    ++ +VL   ++      +V  L  L Q+  A 
Sbjct: 242 NFGQLLFFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIAC 301

Query: 422 EKVFQL--------IDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPS-RPTVPI-LNHV 471
           +++            +L  S+      +   + +  ++  ++  +  +   +    L  +
Sbjct: 302 QRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPI 361

Query: 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
            L I   ++V IVG +G GKST   L   LY P +G++
Sbjct: 362 DLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEI 399

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 49.6 bits (118), Expect = 4e-06
 Identities = 73/341 (21%), Positives = 131/341 (38%), Gaps = 22/341 (6%)

Query: 180  LCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQ 239
            L +  G      S   SI  I   + L + L    L   + FF+    G L +R + +  
Sbjct: 1014 LGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELD 1073

Query: 240  RLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVY-----GQY 294
             + ++I   I M + +     GA I +L L+ P+    +     L   V  +      Q 
Sbjct: 1074 TVDSMIPPVIKMFMGSLFNVIGALIVIL-LATPIAAVIIPPLGLLYFFVQRFYVASSRQL 1132

Query: 295  QKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAY 354
            ++  SV      +H N    ETL  +  +R +  EE+E  R+    +       +     
Sbjct: 1133 KRLESVSRSPVYSHFN----ETLLGVSVIRAF--EEQE--RFIHQSDLKVDENQKAYYPS 1184

Query: 355  GLWNMSFITLYRSTQVMAVLLGGMSIMIGQ--VSPEQLTKYVLYCEWLIYATWRMVDNLS 412
             + N              VL   +  +I +  +S   +   V Y   + +    +V   S
Sbjct: 1185 IVANRWLAVRLECVGNCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSS 1244

Query: 413  SLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRL---MGHVQFVNISFHYPSRPTVP-IL 468
             +  +I A E++ +  +      +  +           G V+F N    Y  R  +  +L
Sbjct: 1245 EMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRY--REDLDLVL 1302

Query: 469  NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
             H+ +TI   E V IVG +G+GKS+    L R+ E ++G++
Sbjct: 1303 RHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEI 1343

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           + F N+SF Y S  +   L  V   I   +  +IVG +GSGKST   L++ + +   G++
Sbjct: 8   IVFKNVSFQYQSDASF-TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66

Length = 269

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 12/81 (14%)

Query: 429 DLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSG 488
           D L +   L+           V+ +NI+F    +  +  + ++  +++  E +AIVG SG
Sbjct: 5   DELDARDVLA-----------VENLNIAFMQ-EQQKIAAVRNLSFSLQRGETLAIVGESG 52

Query: 489 SGKSTFVNLLLRLYEPSDGQV 509
           SGKS     L+RL E + G V
Sbjct: 53  SGKSVTALALMRLLEQAGGLV 73

Length = 623

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 20/44 (45%), Positives = 28/44 (63%)

Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           P+L +V LT+ A E VA+ G SG+GKST +  L   Y P  G++
Sbjct: 22  PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRI 65

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 47.5 bits (113), Expect = 6e-06
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
           M  ++F  +S+   S     IL  + +  E   +  IVG SG+GKST + L+ RL +P++
Sbjct: 1   MNEIEFKEVSY---SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTE 57

Query: 507 GQV 509
           G +
Sbjct: 58  GSI 60

Length = 241

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 47.2 bits (112), Expect = 6e-06
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
              ILN++ L++ A E +AI G SG GKST + ++  L  P+ G +
Sbjct: 15  DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL 60

Length = 223

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
            +S  Y  R    +LN + L I A + VA+VG SG GKST + LL  L  PS G++
Sbjct: 17  AVSKRYGERT---VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL 69

Length = 257

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 46.7 bits (111), Expect = 6e-06
 Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 5/60 (8%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           V+   I F Y  +P      H  LT    E+ AIVG SGSGKST +NL+     P  G+V
Sbjct: 1   VRLDKIRFSYGEQPM-----HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 48/193 (24%), Positives = 95/193 (49%), Gaps = 15/193 (7%)

Query: 111 AKPITVWIALSRMWNLIGRDKW--IVLVAVASLIVAAVSEITMPRILA----EAVFSAQR 164
                +W  L R+  L     W   + +AV  L VAA +E++ P +++      V     
Sbjct: 2   RSFSQLWPTLKRL--LAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNL 59

Query: 165 EEAMVFHKSSRFLVLLCVTSGI--FSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFF 222
              +V   ++ ++ L  + +G+     L    F+ A + +V++LR  +  A L Q +  F
Sbjct: 60  PLGLVAGLAAAYVGLQLLAAGLHYAQSLL---FNRAAVGVVQQLRTDVMDAALRQPLSAF 116

Query: 223 DTEAVGGLTSRLTADCQRLSNVIGNDINMILRN-SLQGAGAFINLLTLSWPLTLSALLIC 281
           DT+ VG L SR+T D + + ++    +  +LR+ +L GA   + + +L W + L A++I 
Sbjct: 117 DTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGA-MLVAMFSLDWRMALVAIMIF 175

Query: 282 SFLSIIVSVYGQY 294
             + +++ +Y +Y
Sbjct: 176 PAVLVVMVIYQRY 188

Length = 592

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 46.3 bits (111), Expect = 1e-05
 Identities = 16/45 (35%), Positives = 27/45 (60%)

Query: 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
             IL  V LT+   E+VA++G +G+GK+T +  ++ L  P  G +
Sbjct: 13  SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSI 57

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 47.5 bits (114), Expect = 1e-05
 Identities = 17/47 (36%), Positives = 31/47 (65%)

Query: 463 PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           P V   + V L+++  E+ A++G +G+GKST + +L  LY+P  G++
Sbjct: 15  PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61

Length = 501

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           V+  N++  + +   +  LN   L I   E V ++G SG GK+T + ++  L EP+ G++
Sbjct: 1   VELENVTKRFGNVTALDDLN---LDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 18/37 (48%), Positives = 27/37 (72%)

Query: 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           LT+ A E+VAI+G SG+GKST +NL+     P+ G++
Sbjct: 20  LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI 56

Length = 231

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           N++F Y        LN V   ++  E ++I+G +GSGKST V L+  L E   GQ+
Sbjct: 9   NLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64

Length = 279

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 17/43 (39%), Positives = 28/43 (65%)

Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +L+ + L ++  EVVAI+G SGSGK+T +  +  L +P  G +
Sbjct: 18  VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTI 60

Length = 250

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 450 VQFVNISFHYPS--RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
           ++  N+S  Y S  R  V  +++V L ++  E+  IVG SG+GK+T   ++  + EP+ G
Sbjct: 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG 339

Query: 508 QVC 510
           +V 
Sbjct: 340 EVN 342

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
            +SF Y +R     L+ V  T+     VA++G +G+GKST  +LL RLY   +GQ+
Sbjct: 6   GLSFRYGARRA---LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
            L  + L I  N+V A++G SG GKST +  L R+ +   G 
Sbjct: 22  ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGA 63

Length = 253

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 13/46 (28%), Positives = 28/46 (60%)

Query: 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
            V  L+ +  ++E  E+  ++G +G+GK+T + ++L +  P  G+V
Sbjct: 12  RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV 57

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 17/42 (40%), Positives = 28/42 (66%)

Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           L++V + IE  E V ++G +GSGKST +  L  L +P+ G++
Sbjct: 23  LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKI 64

Length = 287

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 21/43 (48%), Positives = 30/43 (69%)

Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +L++V  +I   E++AIVG SGSGKST ++LL  L  P+ G V
Sbjct: 24  VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDV 66

Length = 233

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 458 HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQV 509
           H        IL  V LT++  EV AI+G +GSGKST    ++    YE ++G++
Sbjct: 10  HVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEI 63

Length = 251

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 46.1 bits (109), Expect = 4e-05
 Identities = 96/431 (22%), Positives = 181/431 (41%), Gaps = 56/431 (12%)

Query: 98  WNLSDGQEAENPTAKPITVWIALSR---------MWNLIGRDKWIVLVAVASLIVAAVSE 148
           W L    + E    +    W   SR         + N +G   W+        I   +S+
Sbjct: 261 WQLDQWDQTETLIKRFQRCWTEESRRPKPWLLRALNNSLGGRFWL---GGIFKIGHDLSQ 317

Query: 149 ITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVK-RLR 207
              P IL+  + S Q  +         FL+   VT G+    +       N+  V  RLR
Sbjct: 318 FVGPVILSHLLQSMQEGDPAWVGYVYAFLIFFGVTFGVLCESQY----FQNVGRVGFRLR 373

Query: 208 ETLYSALLFQDVYFFDTEAVGGLTSRLTADCQR------LSNVIGNDINMILRNSLQGAG 261
            TL +A+  + +             RLT + ++      ++N+I  D N + + + Q  G
Sbjct: 374 STLVAAIFHKSL-------------RLTHEARKNFASGKVTNMITTDANALQQIAEQLHG 420

Query: 262 AF-------INLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHAN---N 311
            +       ++++ L   L +++L     L +++ +     ++   LT+E     +    
Sbjct: 421 LWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVG 480

Query: 312 VAQETLCMMRTVRVYGTEEKELGRYK-IWLEKLAFIRIRESMAYGLWNMSFITLYRSTQV 370
           +  E L  M TV+ Y  E+    R + I  E+L++ R  + ++   +N SFI       V
Sbjct: 481 IINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLS--AFN-SFILNSIPVVV 537

Query: 371 MAVLLGGMSIMIGQVSPEQ-LTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLID 429
             V  G   ++ G ++P +  T   L+   ++ +   M+ NL S  Q + A   + ++ +
Sbjct: 538 TLVSFGVFVLLGGDLTPARAFTSLSLFA--VLRSPLNMLPNLLS--QVVNANVSLQRIEE 593

Query: 430 LLPSNQ-FLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSG 488
           LL S +  L++   LQ     +   N  F + S+ + P L+ + L I    +VAIVG +G
Sbjct: 594 LLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTG 653

Query: 489 SGKSTFVNLLL 499
            GK++ ++ +L
Sbjct: 654 EGKTSLISAML 664

Length = 1495

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           ++  N+S     +    IL  +   +   E  AIVG +G+GK+T ++LL   + PS G V
Sbjct: 32  IELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88

Length = 257

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 44.4 bits (106), Expect = 4e-05
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 2/45 (4%)

Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQV 509
           IL  V LTI+  EV A++G +GSGKST    ++    YE ++G++
Sbjct: 15  ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEI 59

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 44.1 bits (105), Expect = 5e-05
 Identities = 12/46 (26%), Positives = 28/46 (60%)

Query: 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
              +L+ + L ++  E+   +G +G+GK+T + ++L L +P  G++
Sbjct: 12  KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI 57

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 45.7 bits (108), Expect = 5e-05
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 7/53 (13%)

Query: 457 FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +HY        LN++   +   E+V I+GL+GSGKST  NL+  +  P+ G V
Sbjct: 36  YHYA-------LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV 81

Length = 549

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 18/45 (40%), Positives = 31/45 (68%), Gaps = 2/45 (4%)

Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL--LRLYEPSDGQV 509
           +L ++  TIE  EV+ I+G SG+GKS  +++L  +  YEP+ G++
Sbjct: 15  VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRI 59

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           Q  ++   Y  +P    L  + LT+E+ E++ ++G SG GK+T +NL+        G +
Sbjct: 3   QISHLYADYGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI 58

Length = 255

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 449 HVQFVNISF--HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
           +V  V+ +F  H      +P+L +V L++ A E V + G SGSGKST +  L   Y P +
Sbjct: 6   NVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDE 65

Query: 507 GQV 509
           GQ+
Sbjct: 66  GQI 68

Length = 235

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +L  V L   A +V++I+G SGSGKSTF+  +  L +PS G +
Sbjct: 21  VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSI 63

Length = 256

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 454 NISFHYPSR-PTV-PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           NI   +  + PT    L++V + I   E +AI+G +GSGK+TF+  L  L  P  G +
Sbjct: 7   NIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTI 64

Length = 305

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 3/61 (4%)

Query: 443 LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502
           + +L+  ++  N+SF+Y    T  IL  V + I  ++V AI+G SG GKSTF+  L R+ 
Sbjct: 1   MSKLIPAIKVNNLSFYYD---TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN 57

Query: 503 E 503
           E
Sbjct: 58  E 58

Length = 261

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 15/33 (45%), Positives = 17/33 (51%)

Query: 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510
            EV+ IVG  GSGK+T    L R   P  G V 
Sbjct: 2   GEVILIVGPPGSGKTTLARALARELGPPGGGVI 34

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           N+SF  P R    +L+ + LT  A +V  ++G +GSGKST + +L R   PS+G++
Sbjct: 16  NVSFRVPGRT---LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEI 68

Length = 265

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 16/42 (38%), Positives = 27/42 (64%)

Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           L+ V L +    +VA++G SGSGKST + ++  L +P  G++
Sbjct: 16  LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRI 57

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 17/39 (43%), Positives = 22/39 (56%)

Query: 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           V   +   EV+ IVG SGSGK+T +N L     P  G+V
Sbjct: 25  VSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEV 63

Length = 258

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
           L ++ L I  N+V A++G SG GKST +  L R+ +   G 
Sbjct: 17  LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGV 57

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           ++  N+S+ YP     P L ++ L I+  E + I+G +GSGKST    L  L  P  G+V
Sbjct: 2   IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59

Length = 274

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           N+   + +      L+ + L I++ E+VA++G SG+GKST + ++  L  P  G++
Sbjct: 7   NVKKRFGAFGA---LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI 59

Length = 345

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 15/41 (36%), Positives = 27/41 (65%)

Query: 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           N+V L +   E+V+++G +G+GK+T  N L   Y+P+ G +
Sbjct: 22  NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI 62

Length = 255

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 3/61 (4%)

Query: 443 LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502
            Q+L+  ++  ++SF+Y    T   +  + + I  N+V AI+G SG GKSTF+  L R+ 
Sbjct: 1   NQQLIPAIKVKDLSFYYN---TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRIS 57

Query: 503 E 503
           E
Sbjct: 58  E 58

Length = 259

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 16/44 (36%), Positives = 25/44 (56%)

Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
            ILN++  ++ A E   I G SG GKST + ++  L  P+ G +
Sbjct: 21  KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64

Length = 225

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query: 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           L +   E+VAI+G SG+GKST +NL+    EP+ G +
Sbjct: 19  LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSI 55

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           ++  N+S  Y        L+ V L I+  E   ++G SG GK+T + L+     P+ G++
Sbjct: 1   IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +   N+S  Y ++    +L+ V L I    + +I+G +G+GKST ++++ RL +   G++
Sbjct: 2   ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58

Length = 252

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           + LT+   + + +VG SGSGKST    LLRL  PS G++
Sbjct: 306 ISLTLRRGQTLGLVGESGSGKSTLGLALLRLI-PSQGEI 343

Length = 534

>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 450 VQFVNISFHYPSR-------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502
           +Q +++  HYP +         V  L+ V  T+E  + +A+VG SG GKST   LL  + 
Sbjct: 6   LQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIE 65

Query: 503 EPSDGQ 508
            P+ G+
Sbjct: 66  TPTGGE 71

Length = 327

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 42.2 bits (100), Expect = 5e-04
 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 5/68 (7%)

Query: 442 KLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501
           KL R    V+  N++  + + P   +  ++ L +EA E +AI+G +G GK+T +  L+  
Sbjct: 314 KLHRNALEVE--NLTKGFDNGP---LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGE 368

Query: 502 YEPSDGQV 509
            EP  G V
Sbjct: 369 LEPDSGTV 376

Length = 530

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 452 FVNISF---HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL 498
           F N++      PS+    +L +V    +  E+ AI+G SG+GKST +N L
Sbjct: 6   FRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNAL 55

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 14/44 (31%), Positives = 25/44 (56%)

Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
            + + +  T+ A E + I G +G+GK+T + +L  L  P  G+V
Sbjct: 16  TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV 59

Length = 209

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 42.1 bits (100), Expect = 6e-04
 Identities = 12/27 (44%), Positives = 20/27 (74%)

Query: 473 LTIEANEVVAIVGLSGSGKSTFVNLLL 499
            T+ A + +A+VG SG+GK++ +N LL
Sbjct: 371 FTLPAGQRIALVGPSGAGKTSLLNALL 397

Length = 588

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 42.2 bits (100), Expect = 6e-04
 Identities = 20/57 (35%), Positives = 33/57 (57%)

Query: 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           ++I   + S    P+L++  L IE NE V +VG +G+GKST + +L       DG++
Sbjct: 4   ISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRI 60

Length = 635

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 18/37 (48%), Positives = 27/37 (72%), Gaps = 3/37 (8%)

Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFV---NLLLRL 501
           L ++ L+I  NEV AI+G SG GKSTF+   NL++++
Sbjct: 28  LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQM 64

Length = 259

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 16/44 (36%), Positives = 25/44 (56%)

Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
            ILN + L++   ++ A++G +G GKST +    RL  P  G V
Sbjct: 16  RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTV 59

Length = 255

>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 21/56 (37%), Positives = 35/56 (62%)

Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           N+ F        P+L ++ L IE  E++AI G +GSGK++ + L+L   EPS+G++
Sbjct: 39  NLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI 94

The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 458 HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
            Y     V  +  V    E  E+  ++G +G+GK+T + ++  L  P  G+V
Sbjct: 10  SYG--SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59

Length = 245

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 41.3 bits (97), Expect = 8e-04
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
           V+F ++SF YP     P LN +  +I      A++G +GSGKST   L+  L  P D
Sbjct: 6   VEFKHVSFTYPDSK-KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDD 61

Length = 282

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 454 NISFHY---PSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           N+S+ Y           L+ V L ++  E + I+G +GSGKST    +  L  PS+G+V
Sbjct: 9   NVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKV 67

Length = 280

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 41.8 bits (98), Expect = 8e-04
 Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 5/58 (8%)

Query: 452 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           F N S +       P+L ++   +E  +++A+ G +GSGKS+ + +++   EPS+G++
Sbjct: 431 FSNFSLY-----VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI 483

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 40.7 bits (95), Expect = 9e-04
 Identities = 19/43 (44%), Positives = 29/43 (67%)

Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +L  V L   A +V++I+G SGSGKSTF+  +  L +PS+G +
Sbjct: 20  VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSI 62

Length = 257

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 41.3 bits (97), Expect = 9e-04
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
              T+    V AI G SGSGK+T + L+  L  P +G++
Sbjct: 16  ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEI 54

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 19/42 (45%), Positives = 28/42 (66%)

Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           L  V LTI+  E ++++G SG GKST +NL+  L +P+ G V
Sbjct: 1   LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGV 42

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 447 MGHVQFVNISFHYPSRPTV--PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 504
           MG +   N+S+ Y +        L  V LTIE     A +G +GSGKST + LL  L+ P
Sbjct: 1   MG-INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP 59

Query: 505 SDGQV 509
           + G V
Sbjct: 60  TQGSV 64

Length = 280

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 13/36 (36%), Positives = 25/36 (69%)

Query: 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +I  +EV+ I+G +G GK+TF+ +L  + +P +G +
Sbjct: 21  SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDI 56

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 40.5 bits (94), Expect = 0.001
 Identities = 23/56 (41%), Positives = 32/56 (57%)

Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           N+ F Y     V  LN V  +I   E V+I+G +GSGKST   L+  L+E  +G+V
Sbjct: 9   NLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64

Length = 277

>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTF 494
              IL  + L+I   E+ AI+G +GSGKST 
Sbjct: 19  ENEILKGLNLSINKGEIHAIMGPNGSGKSTL 49

Length = 252

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 15/28 (53%), Positives = 20/28 (71%)

Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKST 493
            IL  V LT++  E+ AI+G +GSGKST
Sbjct: 14  EILKGVNLTVKKGEIHAIMGPNGSGKST 41

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
            ++ + YP       L  +    E  E+VA++G +G+GKST       + +P+ G+V
Sbjct: 5   RDLKYSYPDGTEA--LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59

Length = 275

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 18/54 (33%), Positives = 29/54 (53%)

Query: 456 SFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           S        V  L  +  TIE  E+V  +G +G+GK+T + +L  L +P+ G+V
Sbjct: 25  SLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEV 78

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 8/52 (15%)

Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--------LYEPSDGQV 509
            +L ++ L I+  +VVA+VG SG+GK+T + ++L          Y P  G+V
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKV 448

Length = 593

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           L  V ++I +   VAI+G +GSGKST +  L  L +P+ G V
Sbjct: 23  LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTV 64

Length = 290

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 39.8 bits (94), Expect = 0.002
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +  N+S  Y     +  L  V L +E  E+VA++G +G+GK+T +  ++ L  P  G++
Sbjct: 5   EVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60

Length = 237

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +    I     S   V  L  V LT+   E+ A++G +G+GKST + +L  ++EP+ G +
Sbjct: 6   ISMAGIG---KSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI 62

Length = 510

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +Q  N++  Y  +     L+ V LT+    +  ++G +G+GK+T + +L  L  PS G +
Sbjct: 1   LQLENLTKRYGKKR---ALDGVSLTLG-PGMYGLLGPNGAGKTTLMRILATLTPPSSGTI 56

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 462 RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           R TV  +  +  T+   + +AI+G +GSGKST   +L  + EP+ G++
Sbjct: 23  RQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEL 70

Length = 267

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 16/37 (43%), Positives = 25/37 (67%)

Query: 462 RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL 498
                ILN V L +E+ +V+AI+G SGSGK+T ++ +
Sbjct: 17  NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAI 53

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           IL  V L ++  E +A++G SGSGKST + +L  L + S G+V
Sbjct: 25  ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEV 67

Length = 228

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 39.0 bits (92), Expect = 0.002
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +  V   + A E+V I GL G+G++     L  L  P+ G++
Sbjct: 16  VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEI 57

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 15/44 (34%), Positives = 26/44 (59%)

Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
             LN + L I   + V ++G +G+GKST +N +    +P+ GQ+
Sbjct: 20  RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQI 63

Length = 263

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 450 VQFVNISFHY-PSRPTVPI-LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
           ++F N+ + Y P  P     L+++   +E    VA+VG +GSGKST +     L +PS G
Sbjct: 3   IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62

Query: 508 QV 509
            +
Sbjct: 63  TI 64

Length = 287

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503
           V L IE   V A +G SG GKST +  L R++E
Sbjct: 23  VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHE 55

Length = 258

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 39.0 bits (92), Expect = 0.002
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           IL  V L +   EV  ++G +G GK+T +  L+ L     G +
Sbjct: 15  ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSI 57

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
             ++ F  I   +P    V  L+ +     A +V A++G +G+GKST + +L   Y+P  
Sbjct: 2   SPYLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDA 58

Query: 507 GQV 509
           G +
Sbjct: 59  GSI 61

Length = 501

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503
           L ++ L I  NEV AI+G SG GKST++  L R+ E
Sbjct: 40  LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVE 75

Length = 271

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 7/55 (12%)

Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501
           M  V   N++  Y     V I   + L I   E V  VG SG GKST    LLR+
Sbjct: 1   MASVTLRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKST----LLRM 48

Length = 369

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 13/43 (30%), Positives = 28/43 (65%)

Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
            +N++ LT+  N V  ++G +G+GKST + ++  +  P+ G++
Sbjct: 15  AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI 57

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
             ++ V LTI   E+ A++G SG GKST + +L    +P+ GQ+
Sbjct: 33  HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI 76

Length = 377

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 450 VQFVNISFHYPSRPTVPI----LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505
           ++F N+S+ Y  +   P     ++ V    E  +  AIVG +GSGKST +  +  L +P+
Sbjct: 3   IRFDNVSYTY--QKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT 60

Query: 506 DGQV 509
            G V
Sbjct: 61  TGTV 64

Length = 286

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 39.5 bits (93), Expect = 0.004
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 459 YPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
              R    + + V   + A E+V I G++G+G+S  V  +  L +P+ G++
Sbjct: 266 KDRRGVTAVKD-VSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRI 315

Length = 501

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           N+S+    R    +L+ V L +   EV+AI+G +G+GKST +  L     P  G+V
Sbjct: 6   NLSYSLAGRR---LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV 58

Length = 259

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.8 bits (90), Expect = 0.004
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 5/53 (9%)

Query: 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501
            V+  ++S +Y  +  V   N + + IE + V A++G SG GKSTF+  + R+
Sbjct: 23  EVK--DLSIYYGEKRAV---NDISMDIEKHAVTALIGPSGCGKSTFLRSINRM 70

Length = 268

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
           M     +   F    +     ++ V  T++  EV  ++G +G+GK+T + +L  L EP  
Sbjct: 1   MITADALTKRFRDVKKTVQ-AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDA 59

Query: 507 GQV 509
           G  
Sbjct: 60  GFA 62

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 459 YPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           YP  P V  L  +    E  EV+A++G +G+GKST +  L  L  P  G V
Sbjct: 1   YPGGPEV--LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAV 49

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 13/38 (34%), Positives = 24/38 (63%)

Query: 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510
            T+ A  + A+ G SGSGK++ +N++  L  P +G++ 
Sbjct: 19  FTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIE 56

Length = 352

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 15/44 (34%), Positives = 28/44 (63%)

Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510
           +LN + L I + ++VA++G SGSGK+T + ++  L   + G + 
Sbjct: 17  VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIR 60

Length = 353

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501
           L  + L IE N+V A++G SG GKSTF+  L R+
Sbjct: 19  LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRM 52

Length = 250

>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 17/46 (36%), Positives = 28/46 (60%)

Query: 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           T+  ++ V L +   E + +VG SG GKSTF   ++ L + +DG+V
Sbjct: 33  TLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEV 78

Length = 331

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	510
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	100.0
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	100.0
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	100.0
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	100.0
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	100.0
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	100.0
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	100.0
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	100.0
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	100.0
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	100.0
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	100.0
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	100.0
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	100.0
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	100.0
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	100.0
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	100.0
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	100.0
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	100.0
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	100.0
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	100.0
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	100.0
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
PRK10522	547	multidrug transporter membrane component/ATP-bindi	100.0
COG4987	573	CydC ABC-type transport system involved in cytochr	100.0
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	100.0
COG4988	559	CydD ABC-type transport system involved in cytochr	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	100.0
KOG0054	1381	consensus Multidrug resistance-associated protein/	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	100.0
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.97
PF00664	275	ABC_membrane: ABC transporter transmembrane region	99.96
COG4178	604	ABC-type uncharacterized transport system, permeas	99.94
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.84
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.64
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.63
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.62
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.61
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.6
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.6
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.59
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.58
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.58
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.58
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.58
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.58
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.57
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.57
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.57
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	99.57
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.57
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.57
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.57
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.56
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.56
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.56
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.56
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.56
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.56
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.55
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.55
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.55
cd03246	173	ABCC_Protease_Secretion This family represents the	99.55
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.55
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.55
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.55
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.55
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.55
PRK10908	222	cell division protein FtsE; Provisional	99.55
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.55
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.55
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.55
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.55
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.55
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.55
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.54
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.54
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.54
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.54
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.54
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.54
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.54
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.54
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.54
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.54
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.54
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.53
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.53
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.53
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.53
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.53
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.53
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.53
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.53
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.53
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.53
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.53
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.53
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.53
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.52
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.52
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.52
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.52
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.52
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.52
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.52
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.52
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.52
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.52
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.52
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.52
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.52
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.52
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.51
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.51
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.51
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.51
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.51
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.51
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.51
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.51
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.51
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.51
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.5
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.5
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.5
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.5
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.5
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.5
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.5
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.5
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.5
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.49
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.49
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.49
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.49
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.49
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.48
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.48
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.48
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.48
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.48
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.48
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.48
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.48
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.47
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.47
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.47
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.47
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.47
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.47
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.47
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.47
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.47
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.47
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.47
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.46
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.46
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.46
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.46
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.46
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.46
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.46
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.46
COG4181	228	Predicted ABC-type transport system involved in ly	99.46
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.46
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.46
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.46
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.45
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.45
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.45
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.45
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.45
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.45
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.44
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.44
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.44
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.44
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.44
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.44
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.44
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.44
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.44
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.43
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.43
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.43
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.43
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.43
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.43
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.43
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.42
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.42
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.42
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.42
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.42
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.41
PRK10938	490	putative molybdenum transport ATP-binding protein	99.41
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.41
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.41
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.41
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.41
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.4
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.4
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.4
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.4
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.4
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.39
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.39
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.39
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.39
COG1123	539	ATPase components of various ABC-type transport sy	99.39
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.38
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.38
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.38
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.38
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.38
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.37
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.37
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.36
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.36
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.36
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.36
PRK11147	635	ABC transporter ATPase component; Reviewed	99.36
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.35
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.35
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.35
PLN03073	718	ABC transporter F family; Provisional	99.34
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.33
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.33
PRK11147	635	ABC transporter ATPase component; Reviewed	99.32
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.32
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.32
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.31
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.31
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.3
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.29
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.29
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.29
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.29
PRK10938	490	putative molybdenum transport ATP-binding protein	99.28
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.28
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.28
PRK11098	409	microcin B17 transporter; Reviewed	99.25
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.24
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.24
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.23
COG0488	530	Uup ATPase components of ABC transporters with dup	99.23
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.23
PLN03073	718	ABC transporter F family; Provisional	99.23
TIGR00767	415	rho transcription termination factor Rho. Members	99.22
COG1123	539	ATPase components of various ABC-type transport sy	99.22
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.22
COG0488	530	Uup ATPase components of ABC transporters with dup	99.21
PRK12369	326	putative transporter; Reviewed	99.2
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.19
PF06472	281	ABC_membrane_2: ABC transporter transmembrane regi	99.19
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.18
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.17
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.16
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.16
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.15
PRK13409	590	putative ATPase RIL; Provisional	99.15
PLN03211	659	ABC transporter G-25; Provisional	99.15
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.15
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.14
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.13
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.12
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.1
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.09
PRK13409	590	putative ATPase RIL; Provisional	99.08
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.07
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.05
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.03
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.03
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.02
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.02
COG4172	534	ABC-type uncharacterized transport system, duplica	99.01
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.0
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	98.99
PLN03140	1470	ABC transporter G family member; Provisional	98.95
COG4674	249	Uncharacterized ABC-type transport system, ATPase	98.91
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	98.9
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	98.9
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	98.88
PF13748	237	ABC_membrane_3: ABC transporter transmembrane regi	98.87
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.87
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.87
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	98.81
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	98.75
PLN03140	1470	ABC transporter G family member; Provisional	98.72
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	98.68
COG4172	534	ABC-type uncharacterized transport system, duplica	98.68
PRK15494	339	era GTPase Era; Provisional	98.45
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.44
KOG0927	614	consensus Predicted transporter (ABC superfamily)	98.36
PF05992	315	SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009	98.36
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	98.3
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	98.22
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	98.21
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.19
PRK08149	428	ATP synthase SpaL; Validated	98.13
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.12
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.08
KOG0062	582	consensus ATPase component of ABC transporters wit	98.03
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.01
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	97.98
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	97.98
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	97.98
PRK09862	506	putative ATP-dependent protease; Provisional	97.93
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	97.92
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	97.91
PRK09099	441	type III secretion system ATPase; Provisional	97.91
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	97.89
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	97.89
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	97.89
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	97.88
PRK00635	1809	excinuclease ABC subunit A; Provisional	97.87
PLN02796	347	D-glycerate 3-kinase	97.87
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	97.86
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	97.86
PRK05688	451	fliI flagellum-specific ATP synthase; Validated	97.85
PRK00635	1809	excinuclease ABC subunit A; Provisional	97.83
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	97.79
PRK08972	444	fliI flagellum-specific ATP synthase; Validated	97.79
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	97.78
PRK01889	356	GTPase RsgA; Reviewed	97.77
PRK08472	434	fliI flagellum-specific ATP synthase; Validated	97.76
PRK05922	434	type III secretion system ATPase; Validated	97.74
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	97.73
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.72
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	97.72
PRK06936	439	type III secretion system ATPase; Provisional	97.7
PRK06820	440	type III secretion system ATPase; Validated	97.68
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.66
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	97.65
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	97.63
PRK00098	298	GTPase RsgA; Reviewed	97.62
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	97.61
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	97.6
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.59
PRK06315	442	type III secretion system ATPase; Provisional	97.58
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.57
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	97.56
KOG0062	582	consensus ATPase component of ABC transporters wit	97.54
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	97.54
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	97.51
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.48
COG3845	501	ABC-type uncharacterized transport systems, ATPase	97.45
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.44
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	97.41
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	97.38
PRK09183	259	transposase/IS protein; Provisional	97.37
PRK08927	442	fliI flagellum-specific ATP synthase; Validated	97.37
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	97.3
PRK10416	318	signal recognition particle-docking protein FtsY;	97.3
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	97.3
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	97.3
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	97.28
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.28
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.23
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.22
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.22
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	97.16
PRK13851	344	type IV secretion system protein VirB11; Provision	97.15
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	97.09
PLN02165	334	adenylate isopentenyltransferase	97.08
PLN03046	460	D-glycerate 3-kinase; Provisional	97.04
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.99
PLN02318	656	phosphoribulokinase/uridine kinase	96.97
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	96.87
PRK12288	347	GTPase RsgA; Reviewed	96.87
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	96.86
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	96.84
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	96.76
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	96.75
PRK12289	352	GTPase RsgA; Reviewed	96.7
COG1162	301	Predicted GTPases [General function prediction onl	96.69
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	96.69
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	96.68
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	96.67
TIGR03819	340	heli_sec_ATPase helicase/secretion neighborhood AT	96.54
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	96.53
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	96.46
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	96.46
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	96.43
PRK08099	399	bifunctional DNA-binding transcriptional repressor	96.42
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	96.42
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	96.42
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	96.37
PF00664	275	ABC_membrane: ABC transporter transmembrane region	96.34
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	96.32
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	96.32
COG3910	233	Predicted ATPase [General function prediction only	96.31
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.31
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	96.3
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	96.3
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	96.28
PTZ00202	550	tuzin; Provisional	96.28
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	96.27
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	96.27
COG1133	405	SbmA ABC-type long-chain fatty acid transport syst	96.26
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	96.23
PTZ00035	337	Rad51 protein; Provisional	96.23
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	96.22
PRK09866	741	hypothetical protein; Provisional	96.19
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	96.18
PRK09087	226	hypothetical protein; Validated	96.16
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	96.13
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	96.11
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	96.03
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	96.02
PLN02348	395	phosphoribulokinase	95.91
PRK10522	547	multidrug transporter membrane component/ATP-bindi	95.86
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	95.83
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	95.81
PLN03210	1153	Resistant to P. syringae 6; Provisional	95.78
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	95.78
PLN02772	398	guanylate kinase	95.77
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	95.74
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	95.7
TIGR00064	272	ftsY signal recognition particle-docking protein F	95.66
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	95.65
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	95.64
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	95.64
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	95.62
PRK13833	323	conjugal transfer protein TrbB; Provisional	95.62
PRK05439	311	pantothenate kinase; Provisional	95.56
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	95.48
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	95.48
PRK12608	380	transcription termination factor Rho; Provisional	95.48
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	95.43
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	95.42
PLN02200	234	adenylate kinase family protein	95.41
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	95.4
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	95.37
PRK10646	153	ADP-binding protein; Provisional	95.32
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	95.32
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	95.29
TIGR02533	486	type_II_gspE general secretory pathway protein E.	95.27
PRK10246	1047	exonuclease subunit SbcC; Provisional	95.23
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	95.1
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	95.09
PRK09435	332	membrane ATPase/protein kinase; Provisional	95.07
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	94.99
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	94.96
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	94.96
PRK13764	602	ATPase; Provisional	94.94
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	94.92
PLN02199	303	shikimate kinase	94.89
cd01134	369	V_A-ATPase_A V/A-type ATP synthase catalytic subun	94.86
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	94.85
PF01580	205	FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00	94.76
COG0630	312	VirB11 Type IV secretory pathway, VirB11 component	94.75
cd01133	274	F1-ATPase_beta F1 ATP synthase beta subunit, nucle	94.72
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	94.7
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	94.66
PRK12597	461	F0F1 ATP synthase subunit beta; Provisional	94.62
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	94.62
PRK13853	789	type IV secretion system protein VirB4; Provisiona	94.52
COG0802	149	Predicted ATPase or kinase [General function predi	94.51
PRK09376	416	rho transcription termination factor Rho; Provisio	94.49
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	94.49
COG4962	355	CpaF Flp pilus assembly protein, ATPase CpaF [Intr	94.46
PRK14974	336	cell division protein FtsY; Provisional	94.45
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	94.44
COG3451	796	VirB4 Type IV secretory pathway, VirB4 components	94.35
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	94.34
cd01379	653	MYSc_type_III Myosin motor domain, type III myosin	94.29
PRK08903	227	DnaA regulatory inactivator Hda; Validated	94.18
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	94.17
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	94.16
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	94.13
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	94.12
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	94.02
PRK08084	235	DNA replication initiation factor; Provisional	94.0
PRK12678	672	transcription termination factor Rho; Provisional	94.0
PRK06526	254	transposase; Provisional	93.96
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	93.95
PF13245	76	AAA_19: Part of AAA domain	93.93
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	93.88
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	93.88
PRK13830	818	conjugal transfer protein TrbE; Provisional	93.83
cd01132	274	F1_ATPase_alpha F1 ATP synthase alpha, central dom	93.82
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	93.81

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.8e-70  Score=577.21  Aligned_cols=392  Identities=33%  Similarity=0.552  Sum_probs=368.0

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          118 IALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE--EAMVFHKSSRFLVLLCVTSGIFSGLRSGCF  195 (510)
Q Consensus       118 ~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~--~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~  195 (510)
                      ..++|++.+.+|+++++..++.++++.++..+++|.+++..++....+  ....+......+.++.++.+++.++|.+++
T Consensus       133 ~~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~  212 (716)
T KOG0058|consen  133 TLLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLL  212 (716)
T ss_pred             hHHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            477899999999999999999999999999999999999888654331  223455566677788888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010471          196 SIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTL  275 (510)
Q Consensus       196 ~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~l  275 (510)
                      .+++.++..++|.++|+++++|+++|||++++||++||+++|++.+.+.++..++..+++.++.++.+++|+++||+|++
T Consensus       213 ~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltl  292 (716)
T KOG0058|consen  213 QYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTL  292 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          276 SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG  355 (510)
Q Consensus       276 i~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (510)
                      ++++.+|++.++.++|+++.+++.++.|+..+++++++.|.+++|||||+|++|++|.+||.+..++..+...|....++
T Consensus       293 v~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~  372 (716)
T KOG0058|consen  293 VTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYG  372 (716)
T ss_pred             HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 010471          356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ  435 (510)
Q Consensus       356 ~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~  435 (510)
                      .+.+..++..++..+.++++|++++..|++|.|++++|++|..++..++..++..+++++++.+|.+|++|++|++|..+
T Consensus       373 ~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~  452 (716)
T KOG0058|consen  373 IFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIP  452 (716)
T ss_pred             HhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999865


Q ss_pred             CCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          436 FLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       436 ~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .. +...|....|.|+|+||+|+||.||+.+||||+||+|+|||+||+||||||||||+++||+|||+|++|+|+
T Consensus       453 ~~-G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Il  526 (716)
T KOG0058|consen  453 LT-GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRIL  526 (716)
T ss_pred             CC-CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence            33 222333578999999999999999999999999999999999999999999999999999999999999985

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=100.00  E-value=1.5e-57  Score=497.72  Aligned_cols=415  Identities=21%  Similarity=0.294  Sum_probs=362.8

Q ss_pred             HHhcCCCcccccCCCcccCCCCCCCcchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh-chhhh
Q 010471           89 RQVFPGGSWWNLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSA-QREEA  167 (510)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~-~~~~~  167 (510)
                      .+.|. +....++|..+.+. ..++.   ..+.+++..+.++++.+..+++.+++..++.++.|++....+|.. ...+.
T Consensus       116 ~~~~t-g~~l~l~~~~~~~~-~~~~~---~~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~  190 (709)
T COG2274         116 EKLWT-GIALLLAPTASRKF-KDIPP---FGLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASR  190 (709)
T ss_pred             HHhhh-eeEEEEeccccccc-ccccc---cchHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCch
Confidence            34454 45566676654211 22222   356788999999999999999999999999999999988777543 12222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHH
Q 010471          168 MVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGN  247 (510)
Q Consensus       168 ~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~  247 (510)
                      ..+.-....+....+...++..+|.+++.+.+.|+..++-.++|+|++++|++||+++++||+++|++ |.++|+++++.
T Consensus       191 ~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~  269 (709)
T COG2274         191 STLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTG  269 (709)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHH
Confidence            22222222334455667788899999999999999999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhc
Q 010471          248 DINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYG  327 (510)
Q Consensus       248 ~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~  327 (510)
                      .+..++..+..+++++++|++|||+|++++++.+|+++++..++.+..++..++..+..++.++.+.|+++|++|||+.+
T Consensus       270 ~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~  349 (709)
T COG2274         270 SILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALA  349 (709)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHH
Q 010471          328 TEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRM  407 (510)
Q Consensus       328 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l  407 (510)
                      .|+++.++|++...++.+.+.+........+....++..+..++++|+|+++|++|++|+|+++||..+..++..|+.++
T Consensus       350 ~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L  429 (709)
T COG2274         350 AEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRL  429 (709)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHH
Confidence            99999999999999999999999877777788899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCC
Q 010471          408 VDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLS  487 (510)
Q Consensus       408 ~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~S  487 (510)
                      .+.+.++++...+.+|+.++++.++|++........+...|+|+|+||+|+|+.+ ++++|+|+|++|+|||+|||||+|
T Consensus       430 ~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~S  508 (709)
T COG2274         430 SQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRS  508 (709)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCC
Confidence            9999999999999999999999998855322123445678999999999999864 357999999999999999999999


Q ss_pred             CCcHHHHHHHHhcccCCCCceeC
Q 010471          488 GSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       488 GSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |||||||+|||+|+|+|++|+|+
T Consensus       509 GsGKSTL~KLL~gly~p~~G~I~  531 (709)
T COG2274         509 GSGKSTLLKLLLGLYKPQQGRIL  531 (709)
T ss_pred             CCCHHHHHHHHhcCCCCCCceEE
Confidence            99999999999999999999985

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=100.00  E-value=1.1e-56  Score=501.27  Aligned_cols=461  Identities=31%  Similarity=0.399  Sum_probs=388.1

Q ss_pred             eeEeecchhhhhhhhcCCCCCCcCccccccchhHHHHHHHHHHhcCCCcccccCCCcccCCC-CCCCcchHHHHHHHHHh
Q 010471           48 FKRVSFPITNSAFTDSGVPNNESNDNIIKFFDYFQDLVAFIRQVFPGGSWWNLSDGQEAENP-TAKPITVWIALSRMWNL  126 (510)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~  126 (510)
                      ++|++.|.|.++......+. +.......+..|...+++|+.+......|+.+.|....+.. .+++...+..+++++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  155 (711)
T TIGR00958        77 ALCLATPSLSSLRALAFWEA-LDPAVRVALGLWSWFVWSYGAALPAAALWAVLSSAGASEKEAEQGQSETADLLFRLLGL  155 (711)
T ss_pred             HHHHHHHHHHHHHHHHccCC-CccccccccccHHHHHHHHHHHHHHHHHHHhhCCccccccccccccchhhhHHHHHHHH
Confidence            79999999998776665411 12223347778888999998887777778888765322110 02233445678899999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          127 IGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKR  205 (510)
Q Consensus       127 ~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~~~  205 (510)
                      .+++++.+..++++.++.+++.+..|++.+..++... ..+...+.....++.++.++..++.+++.+.....+.++..+
T Consensus       156 ~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  235 (711)
T TIGR00958       156 SGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLR  235 (711)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999888776532 222222333333344455566777888888899999999999


Q ss_pred             HHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 010471          206 LRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLS  285 (510)
Q Consensus       206 lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~l~~  285 (510)
                      +|.++|++++++|++||++.++||+++|+++|++.+++.+...+..++.+++.+++.+++|+.++|++++++++..|+..
T Consensus       236 lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~  315 (711)
T TIGR00958       236 IREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVF  315 (711)
T ss_pred             HHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          286 IIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLY  365 (510)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  365 (510)
                      ++...+.++.++..++.++..++.++.+.|+++|+++||+|+.|+++.++|++..++..+...+.....+........+.
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (711)
T TIGR00958       316 LAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLG  395 (711)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888988888988899999999999999999999999999999999999999999999988887766666666666667


Q ss_pred             HHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccCCC
Q 010471          366 RSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQR  445 (510)
Q Consensus       366 ~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~~~~  445 (510)
                      .+..++++++|++++.+|++++|++++++.|..++..|+..++..+.++.++..+.+|++++++.+++.+.. ....+.+
T Consensus       396 ~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~-~~~~~~~  474 (711)
T TIGR00958       396 MLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT-GTLAPLN  474 (711)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CCCCCCC
Confidence            777788889999999999999999999999999999999999999999999999999999999987664321 1112223


Q ss_pred             ccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       446 ~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ..++|+|+||+|+||+++++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|+
T Consensus       475 ~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~  539 (711)
T TIGR00958       475 LEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVL  539 (711)
T ss_pred             CCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE
Confidence            45789999999999976557899999999999999999999999999999999999999999984

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=100.00  E-value=4.8e-51  Score=456.93  Aligned_cols=414  Identities=18%  Similarity=0.187  Sum_probs=344.5

Q ss_pred             HHhcCCCcccccCCCcccCCCCCCCcchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhch-hhh
Q 010471           89 RQVFPGGSWWNLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR-EEA  167 (510)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~-~~~  167 (510)
                      .+.|. +..+.++|+++++.+..++    ..+++++++++++++.+..+++++++..++.++.|+++...++.... .+.
T Consensus       118 ~~~~~-g~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~  192 (708)
T TIGR01193       118 YEEWT-GIAIFISPTPEYKPIKEKE----NSLLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMM  192 (708)
T ss_pred             HhhCC-CEEEEEEeccccccccccc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh
Confidence            34453 4566677776654322221    34678888899999999999999999999999999998877754321 111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHH
Q 010471          168 MVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGN  247 (510)
Q Consensus       168 ~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~  247 (510)
                      ..+......+.++.+...++.+++.++....+.++..++|.++|++++++|+.||+++++|++++|++ |++.+++.+..
T Consensus       193 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~  271 (708)
T TIGR01193       193 GTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALAS  271 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHH
Confidence            11111111222334456677888888999999999999999999999999999999999999999998 99999998888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhc
Q 010471          248 DINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYG  327 (510)
Q Consensus       248 ~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~  327 (510)
                      .+...+..++..++++++|++++|++++++++.+|++.++...+.++.++..++.++..++.++.+.|+++|+++||++|
T Consensus       272 ~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~  351 (708)
T TIGR01193       272 TILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLT  351 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Confidence            77777778888888888999999999999999999988888888888889899899999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHH
Q 010471          328 TEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRM  407 (510)
Q Consensus       328 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l  407 (510)
                      .|+++.++|++..+++.+...+.....+.......++..+..++++++|++++.+|++|+|+++++..+...+..|+..+
T Consensus       352 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l  431 (708)
T TIGR01193       352 SEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENI  431 (708)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999888887766666566666676777788899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCC
Q 010471          408 VDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLS  487 (510)
Q Consensus       408 ~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~S  487 (510)
                      ...+..+.++..+.+|+.++++.++|.+...+........++|+|+||+|+|++  ++++|+|+||+|++||++||||+|
T Consensus       432 ~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~S  509 (708)
T TIGR01193       432 INLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMS  509 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCC
Confidence            999999999999999999999887654321111112234578999999999974  357999999999999999999999


Q ss_pred             CCcHHHHHHHHhcccCCCCceeC
Q 010471          488 GSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       488 GSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |||||||+|+|+|+|+|++|+|+
T Consensus       510 GsGKSTLlklL~gl~~p~~G~I~  532 (708)
T TIGR01193       510 GSGKSTLAKLLVGFFQARSGEIL  532 (708)
T ss_pred             CCCHHHHHHHHhccCCCCCcEEE
Confidence            99999999999999999999984

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=100.00  E-value=5.9e-51  Score=442.13  Aligned_cols=387  Identities=21%  Similarity=0.182  Sum_probs=321.0

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 010471          121 SRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRF--LVLLCVTSGIFSGLRSGCFSIA  198 (510)
Q Consensus       121 ~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~--l~~l~~~~~~~~~i~~~~~~~~  198 (510)
                      ++++++.+++++.++.+++++++.+++.+..|+++...++.....+. .+......  +.++.++..++.+++.+.....
T Consensus         2 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (529)
T TIGR02868         2 LRILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDA   80 (529)
T ss_pred             hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678888999988999999999999999999888777754322111 11100001  1123344556677778888888


Q ss_pred             HHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 010471          199 NIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSAL  278 (510)
Q Consensus       199 ~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~l  278 (510)
                      ..++..++|.++|++++++|+++|++.++|++++|+++|++.+++.+...+..++..++.++++++++++++|+++++++
T Consensus        81 ~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l  160 (529)
T TIGR02868        81 ALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLA  160 (529)
T ss_pred             HHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999988888888898899999999999999999998


Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          279 LICSFLSIIVS-VYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLW  357 (510)
Q Consensus       279 i~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (510)
                      +++|++.++.. +..+..++..++.++..++.++.+.|.++|+++||+|+.|+++.++|++..++..+...+..+..+..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (529)
T TIGR02868       161 AGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLG  240 (529)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88777665543 33444455666677788899999999999999999999999999999999999999888887777776


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 010471          358 NMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL  437 (510)
Q Consensus       358 ~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~  437 (510)
                      .....++..+..++++++|++++.+|++++|+++++..+...+..|+..+.+.+..+.++..+.+|+.++++.+++.+..
T Consensus       241 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~  320 (529)
T TIGR02868       241 AAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEG  320 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCC
Confidence            67777777777788889999999999999999999999999999999999999999999999999999999876653211


Q ss_pred             CCC--ccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          438 SEG--VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       438 ~~~--~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      +.+  ....+..++|+|+||+|+|+++  +++|+|+||+|+|||++|||||||||||||+|||+|+|+|++|+|+
T Consensus       321 ~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~  393 (529)
T TIGR02868       321 VVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVT  393 (529)
T ss_pred             CCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence            111  1112234679999999999853  4699999999999999999999999999999999999999999984

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=100.00  E-value=8.7e-51  Score=453.87  Aligned_cols=418  Identities=19%  Similarity=0.206  Sum_probs=345.1

Q ss_pred             HHHhcCCCcccccCCCcccCCCCCCCcchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc-hhh
Q 010471           88 IRQVFPGGSWWNLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REE  166 (510)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~-~~~  166 (510)
                      +.+.|. +..+.++|.++++...+++. ....+++++++++++++.+..+++++++..++.++.|+++...++... ..+
T Consensus       105 ~~~~~~-g~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~  182 (694)
T TIGR03375       105 LEALYS-GYAIFVRPQFRFDARADELI-SPRPKHWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA  182 (694)
T ss_pred             HHhhcC-CeEEEEeccccccccccccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc
Confidence            344453 45566677655433211100 114567788889999999999999999999999999999887775432 122


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHH
Q 010471          167 AMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIG  246 (510)
Q Consensus       167 ~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~  246 (510)
                      ...+......++++.++..++.+++.++....+.++..++|.++|+|++++|++| +++++||+++|+ +|++.+++++.
T Consensus       183 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~  260 (694)
T TIGR03375       183 FETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFT  260 (694)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHh
Confidence            1111111112223344566778889999999999999999999999999999998 788999999999 59999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHh
Q 010471          247 NDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVY  326 (510)
Q Consensus       247 ~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f  326 (510)
                      ..+...+..++.+++++++|++++|.+++++++.+|+++++...+.++.++..++..+..++.++.+.|+++|+++||++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~  340 (694)
T TIGR03375       261 SATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKAL  340 (694)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHc
Confidence            87777777888888888999999999999999999998888888888888888888899999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHH
Q 010471          327 GTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWR  406 (510)
Q Consensus       327 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~  406 (510)
                      +.|+++.++|++..++..+...+..+..+.......++..+..++++++|++++.+|++|+|++++++.+..++..|+..
T Consensus       341 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~  420 (694)
T TIGR03375       341 NAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQ  420 (694)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998888877777777777777777788889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcC
Q 010471          407 MVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGL  486 (510)
Q Consensus       407 l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~  486 (510)
                      +...+.++.++..+.+|+.++++.++|.+............+.|+|+||+|+|+++ ++++|+|+||+|+|||++||||+
T Consensus       421 l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~  499 (694)
T TIGR03375       421 LAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGR  499 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECC
Confidence            99999999999999999999999876533211111122345789999999999854 35799999999999999999999


Q ss_pred             CCCcHHHHHHHHhcccCCCCceeC
Q 010471          487 SGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       487 SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ||||||||+|+|+|+|+|++|+|+
T Consensus       500 sGsGKSTLlklL~gl~~p~~G~I~  523 (694)
T TIGR03375       500 IGSGKSTLLKLLLGLYQPTEGSVL  523 (694)
T ss_pred             CCCCHHHHHHHHhcCCCCCCceEE
Confidence            999999999999999999999984

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.1e-50  Score=448.39  Aligned_cols=393  Identities=26%  Similarity=0.375  Sum_probs=334.6

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HhhchhhhH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          118 IALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAV--FSAQREEAM--VFHKSSRFLVLLCVTSGIFSGLRSG  193 (510)
Q Consensus       118 ~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i--~~~~~~~~~--~~~~~~~~l~~l~~~~~~~~~i~~~  193 (510)
                      ..+.+++++.+|+|+.++.+.+++++.+...-+..+.+...+  +.....|..  .......+.+.+.++..+..+++.+
T Consensus       650 ~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~  729 (1228)
T KOG0055|consen  650 VSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHY  729 (1228)
T ss_pred             ccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457889999999999999998888887764333332233332  111111110  0111112233455667788899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCccccccc-CchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 010471          194 CFSIANIVLVKRLRETLYSALLFQDVYFFDTE-AVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWP  272 (510)
Q Consensus       194 ~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~-~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~  272 (510)
                      ++..++.++..++|.+.|+++++++++|||+. ++|.|.+|+.+|...++..++..+..++.++..++..+++.++++|+
T Consensus       730 ~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~  809 (1228)
T KOG0055|consen  730 FFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWR  809 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999876 35999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          273 LTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESM  352 (510)
Q Consensus       273 l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~  352 (510)
                      |++++++..|++.+......++.+...++..+..++.++.+.|.++++|||++|++|+++.+.|.+.+++..+...|...
T Consensus       810 lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~  889 (1228)
T KOG0055|consen  810 LALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGL  889 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998888999998888889899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 010471          353 AYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP  432 (510)
Q Consensus       353 ~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~  432 (510)
                      +.+.....++.+..+...+++|+|++++.+|.+++.+++-.......-...+.......+++.++..|+.++++++|++|
T Consensus       890 i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~  969 (1228)
T KOG0055|consen  890 ISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKP  969 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999988765544444445566667788999999999999999999998


Q ss_pred             CCCCC-CCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          433 SNQFL-SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       433 e~~~~-~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ..+.. +.+...+..+|+|+|+||+|+||.||+.+||+|+||+|++||++||||||||||||++.||.|||||++|.|.
T Consensus       970 ~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~ 1048 (1228)
T KOG0055|consen  970 TIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVK 1048 (1228)
T ss_pred             CCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence            54422 2233345678999999999999999999999999999999999999999999999999999999999999984

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=100.00  E-value=6e-50  Score=448.39  Aligned_cols=416  Identities=18%  Similarity=0.242  Sum_probs=345.7

Q ss_pred             HHHhcCCCcccccCCCcccCCCCCCCcchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc-hhh
Q 010471           88 IRQVFPGGSWWNLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REE  166 (510)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~-~~~  166 (510)
                      +.+.|. +..+.++|+++++....++    ..+++++++++++++.+..+++++++..++.++.|+++...++... ..+
T Consensus       115 ~~~~~~-g~~l~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~  189 (710)
T TIGR03796       115 FDESFT-GVVLTFEPGPEFQKGGRKP----SLLRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR  189 (710)
T ss_pred             HHhhCC-CeEEEEEECccccccCcCc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            344454 4556677776654322222    3456778888999999999999999999999999999887775432 112


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHH
Q 010471          167 AMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIG  246 (510)
Q Consensus       167 ~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~  246 (510)
                      ...+......+.++.++..++.+++.++....+.++..++|.++|+|++++|+++|+++++||+++|+++| +.+++++.
T Consensus       190 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~  268 (710)
T TIGR03796       190 QDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLS  268 (710)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHH
Confidence            11111111122233445667788889999999999999999999999999999999999999999999977 78999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHh
Q 010471          247 NDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVY  326 (510)
Q Consensus       247 ~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f  326 (510)
                      ..+..++..++.+++++++|+.++|+++++.++.+++..++...+.+..++..++.++..++.++.+.|+++|+++||++
T Consensus       269 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~  348 (710)
T TIGR03796       269 GQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKAS  348 (710)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHc
Confidence            88888888999999999999999999999999999988888888888888888888888899999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHH
Q 010471          327 GTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWR  406 (510)
Q Consensus       327 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~  406 (510)
                      +.|+.+.++|++..++..+...+.....+....+..++..+..++++++|++++.+|++|+|+++++..+...+..|+..
T Consensus       349 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~  428 (710)
T TIGR03796       349 GLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNN  428 (710)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988888776666666777777778888899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC----C-CccC-CCccccEEEEeeeEECCCCCCCCccccceEEeeCCCE
Q 010471          407 MVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS----E-GVKL-QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEV  480 (510)
Q Consensus       407 l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~----~-~~~~-~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~  480 (510)
                      +...+..+.++..+.+|+.++++.++|.+...    . ...+ ....+.|+|+||+|+|++. ++++|+|+||+|++||+
T Consensus       429 l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~  507 (710)
T TIGR03796       429 LVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQR  507 (710)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCE
Confidence            99999999999999999999998876543211    0 0111 2235789999999999864 36799999999999999


Q ss_pred             EEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          481 VAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       481 vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      +||||+||||||||+|+|+|+|+|++|+|+
T Consensus       508 vaIvG~sGsGKSTLlklL~gl~~p~~G~I~  537 (710)
T TIGR03796       508 VALVGGSGSGKSTIAKLVAGLYQPWSGEIL  537 (710)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence            999999999999999999999999999984

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.4e-49  Score=443.63  Aligned_cols=387  Identities=20%  Similarity=0.226  Sum_probs=329.3

Q ss_pred             HHHHHHh-hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          120 LSRMWNL-IGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSI  197 (510)
Q Consensus       120 l~~l~~~-~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~  197 (510)
                      +++++++ ++++++.+...++++++..++.++.|+++...++... ..+...+......+.++.++..++.+++.+....
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (686)
T TIGR03797       123 LRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLR  202 (686)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555 6788999999999999999999999998887775432 1221222111222233444566778888899999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 010471          198 ANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSA  277 (510)
Q Consensus       198 ~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~  277 (510)
                      .+.++..++|.++|+|++++|++||+++++||+++|++ |++.+++.+...+...+......++++++|+.++|++++++
T Consensus       203 ~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~  281 (686)
T TIGR03797       203 LETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVA  281 (686)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998 89999998888777777777778888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          278 LLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLW  357 (510)
Q Consensus       278 li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (510)
                      +++.++..++..++.+..++..++.++..++.++.+.|+++|+++||+++.|+++.++|++..++..+...+........
T Consensus       282 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (686)
T TIGR03797       282 VALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLL  361 (686)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99888888887788888888888888888999999999999999999999999999999999999999888887776666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 010471          358 NMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL  437 (510)
Q Consensus       358 ~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~  437 (510)
                      .....++..+..++++++|++++.+|++|+|+++++..+..++..|+..+...+.++.++..+.+|+.++++.++|.+. 
T Consensus       362 ~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~-  440 (686)
T TIGR03797       362 TVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE-  440 (686)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc-
Confidence            6777777778888889999999999999999999999999999999999999999999999999999999987665331 


Q ss_pred             CCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          438 SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       438 ~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                       +...+....++|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+|||+|+|+|++|+|+
T Consensus       441 -~~~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~  511 (686)
T TIGR03797       441 -AKTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVF  511 (686)
T ss_pred             -CcCCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE
Confidence             111222345689999999999754 36799999999999999999999999999999999999999999984

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=100.00  E-value=1.8e-49  Score=442.99  Aligned_cols=413  Identities=19%  Similarity=0.224  Sum_probs=341.6

Q ss_pred             HHHhcCCCcccccCCCcccCCCCCCCcchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc-hhh
Q 010471           88 IRQVFPGGSWWNLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REE  166 (510)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~-~~~  166 (510)
                      +.+.|. +..+.++|++ +++ + ++.   ..+++++++++++++.+...++++++..++.++.|+++...++... ..+
T Consensus       102 ~~~~~~-g~~l~~~~~~-~~~-~-~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~  174 (694)
T TIGR01846       102 LEALWS-GTVILLATRS-VAG-K-ALK---FGFSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG  174 (694)
T ss_pred             HHhhCC-CeEEEEecCc-ccc-c-ccc---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            344554 4556667654 222 1 111   3466788888899999999999999999999999998887775432 222


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHH
Q 010471          167 AMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIG  246 (510)
Q Consensus       167 ~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~  246 (510)
                      ...+......++++.++..++.+++.++....+.++..++|.++|+|++++|+.||+++++||+++|+ +|++.+++++.
T Consensus       175 ~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~  253 (694)
T TIGR01846       175 LSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLT  253 (694)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHH
Confidence            11121112222333445667788899999999999999999999999999999999999999999999 49999999887


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHh
Q 010471          247 NDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVY  326 (510)
Q Consensus       247 ~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f  326 (510)
                      ..+..++..++..++.++++++++|+++++++++.|++.++...+.++.++..++..+..++.++.+.|+++|+++||++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~  333 (694)
T TIGR01846       254 GSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKAT  333 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHc
Confidence            77777777777777788899999999999999999988888888877777777778888889999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHH
Q 010471          327 GTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWR  406 (510)
Q Consensus       327 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~  406 (510)
                      |.|+++.++|++..+++.+...+..+..+.......++..+..++++++|++++.+|++|+|+++++..+...+..|+..
T Consensus       334 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~  413 (694)
T TIGR01846       334 ATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLR  413 (694)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998888877766666777777778888889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcC
Q 010471          407 MVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGL  486 (510)
Q Consensus       407 l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~  486 (510)
                      +.+.+..+.++..+.+|+.++++.+++.+.. +....+...+.|+|+||+|+|+++ ++++|+|+||+|++||++||||+
T Consensus       414 l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~  491 (694)
T TIGR01846       414 LAQLWQDFQQTGIALERLGDILNSPTEPRSA-GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGP  491 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECC
Confidence            9999999999999999999999887654311 111122345789999999999754 35799999999999999999999


Q ss_pred             CCCcHHHHHHHHhcccCCCCceeC
Q 010471          487 SGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       487 SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ||||||||+|+|+|+|+|++|+|+
T Consensus       492 sGsGKSTL~~ll~g~~~p~~G~I~  515 (694)
T TIGR01846       492 SGSGKSTLTKLLQRLYTPQHGQVL  515 (694)
T ss_pred             CCCCHHHHHHHHhcCCCCCCceEE
Confidence            999999999999999999999984

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=5.3e-49  Score=429.95  Aligned_cols=388  Identities=19%  Similarity=0.195  Sum_probs=321.3

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc-hhhh--HHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 010471          120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REEA--MVFHK--SSRFLVLLCVTSGIFSGLRSGC  194 (510)
Q Consensus       120 l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~-~~~~--~~~~~--~~~~l~~l~~~~~~~~~i~~~~  194 (510)
                      +++++++++++++.++.+++++++.+++.+..|.+++..++... .++.  ..+..  ....+.++.++..++.++..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (574)
T PRK11160          4 LLPFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLV   83 (574)
T ss_pred             hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888999999999999999999999999988777775321 1110  00110  1112223445566777888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 010471          195 FSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLT  274 (510)
Q Consensus       195 ~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~  274 (510)
                      ....+.++..++|.++|+|++++|+.+|++.++|++++|+++|++.+++++...++.++..++.+++++++|+++||+++
T Consensus        84 ~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  163 (574)
T PRK11160         84 SHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLA  163 (574)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          275 LSALLICSFLSI-IVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMA  353 (510)
Q Consensus       275 li~li~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~  353 (510)
                      +++++++|+..+ +..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+++.++|++..+++.+...+..+.
T Consensus       164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  243 (574)
T PRK11160        164 LTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANL  243 (574)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998888776654 3456667777778888888999999999999999999999999999999999999999999888777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 010471          354 YGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWL-IYATWRMVDNLSSLLQSIGATEKVFQLIDLLP  432 (510)
Q Consensus       354 ~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~  432 (510)
                      .+.......++..+..++++++|+++ .+|.+++|.++++..|.... ..++..+...+..+.++..+.+|+.++++.++
T Consensus       244 ~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~  322 (574)
T PRK11160        244 TGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKP  322 (574)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            77766777777777777788899888 58999999999988776443 35777788888999999999999999999876


Q ss_pred             CCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          433 SNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       433 e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      +.+.+++ .......++|+|+||+|+|+++ ++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|+
T Consensus       323 ~~~~~~~-~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~  398 (574)
T PRK11160        323 EVTFPTT-STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEIL  398 (574)
T ss_pred             CCCCCcc-cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence            5332111 1112234689999999999854 25799999999999999999999999999999999999999999984

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=5.6e-49  Score=431.89  Aligned_cols=389  Identities=13%  Similarity=0.130  Sum_probs=315.4

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          118 IALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ--REEAMVFHKSSRFLVLLCVTSGIFSGLRSGCF  195 (510)
Q Consensus       118 ~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~--~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~  195 (510)
                      +.+++++++++++++.++.++++.++.+++.+..|+++...++...  ..+..........+.++.++..++.+++.+..
T Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (588)
T PRK11174          8 ELTRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVG   87 (588)
T ss_pred             hhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467889999999999999999999999999999998887775421  11111111112223334455667778888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010471          196 SIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTL  275 (510)
Q Consensus       196 ~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~l  275 (510)
                      ...+.++..++|.++|+|++++|+++|+++++|++++|+++|++++++.+...+..++..++.+++++++|++++|++++
T Consensus        88 ~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l  167 (588)
T PRK11174         88 FKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGL  167 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999988999998988899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          276 SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG  355 (510)
Q Consensus       276 i~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (510)
                      ++++..|+..++...+.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..+++.+...+..+..+
T Consensus       168 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (588)
T PRK11174        168 ILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAF  247 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998888888888888888888888899999999999999999999999999999999999999988877765555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQL---------TKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQ  426 (510)
Q Consensus       356 ~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l---------~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~e  426 (510)
                      .......++..+..+++++++++.+ .|.+++|++         ++++.+...+..|+..+...+..+.++..+.+|+.+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~  326 (588)
T PRK11174        248 LSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVT  326 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555445555565544 388888764         222355667788999999999999999999999999


Q ss_pred             hhcCCCCCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC
Q 010471          427 LIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD  506 (510)
Q Consensus       427 il~~~~e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s  506 (510)
                      +++.++++....+...+....++|+|+||+|+|+++  +++|+|+||+|+|||++||||+||||||||++||+|+| |++
T Consensus       327 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~--~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~  403 (588)
T PRK11174        327 FLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDG--KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQ  403 (588)
T ss_pred             HHcCCCcccCCCccccCCCCCceEEEEeeEEeccCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCC
Confidence            998765432111111111234579999999988642  57999999999999999999999999999999999999 999


Q ss_pred             ceeC
Q 010471          507 GQVC  510 (510)
Q Consensus       507 G~I~  510 (510)
                      |+|+
T Consensus       404 G~I~  407 (588)
T PRK11174        404 GSLK  407 (588)
T ss_pred             cEEE
Confidence            9984

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=100.00  E-value=6.1e-48  Score=422.29  Aligned_cols=391  Identities=16%  Similarity=0.199  Sum_probs=320.2

Q ss_pred             hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          116 VWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCF  195 (510)
Q Consensus       116 ~~~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~  195 (510)
                      .++.+++++++++++++.++..++++++.+++.++.|++++..++.....+.. .. .....++..+...+..++.....
T Consensus         3 ~~~~~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~   80 (585)
T TIGR01192         3 LFQVYVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSDV-LP-TLALWAGFGVFNTIAYVLVAREA   80 (585)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH-HH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567888899999999999999999999999999999888877543222111 10 01111111222233334444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010471          196 SIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTL  275 (510)
Q Consensus       196 ~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~l  275 (510)
                      .....++..++|.++|++++++|+++|+++++|++++|+++|++.+++.+...+..++..++..++++++|+.+||.+++
T Consensus        81 ~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l  160 (585)
T TIGR01192        81 DRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSI  160 (585)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555666777889999999999999999999999999999999999988888888888888888888899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          276 SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG  355 (510)
Q Consensus       276 i~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (510)
                      ++++++|++.++...+.++.++..++.++..++.++.+.|+++|+++||+|+.|+.+.+++++..+++.+...+..+..+
T Consensus       161 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (585)
T TIGR01192       161 VLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWA  240 (585)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998888888888888888888888888999999999999999999999999999999999998888777766666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 010471          356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ  435 (510)
Q Consensus       356 ~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~  435 (510)
                      .......++..+..++++++|++++.+|++++|+++++..+...+..|+..+.+.+..+.++..+.+|+.++++.+++.+
T Consensus       241 ~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~  320 (585)
T TIGR01192       241 LASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQRE  320 (585)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence            66666666666677788899999999999999999999999999999999999999999999999999999998765432


Q ss_pred             CCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          436 FLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       436 ~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      +..+........+.|+++||+|+|+++  +++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|+
T Consensus       321 ~~~~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~  393 (585)
T TIGR01192       321 EPADAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQIL  393 (585)
T ss_pred             CCccCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEE
Confidence            111111112234579999999999753  4699999999999999999999999999999999999999999984

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=100.00  E-value=6.6e-48  Score=423.00  Aligned_cols=393  Identities=23%  Similarity=0.358  Sum_probs=330.8

Q ss_pred             chHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          115 TVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-EAMVFHKSSRFLVLLCVTSGIFSGLRSG  193 (510)
Q Consensus       115 ~~~~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~i~~~  193 (510)
                      +.|+.+++++++++++++.++.++++.++.+++....|.++...++..... +...+......++++.++..++.+++.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   87 (582)
T PRK11176          8 STWQTFRRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSY   87 (582)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777888899999999888888888887877777777766665432211 1111111111122344455666777778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 010471          194 CFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPL  273 (510)
Q Consensus       194 ~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l  273 (510)
                      .....+.++..++|.++|++++++|+++|++.++|++++|+++|++.+++.+...+..++..++.++++++++++++|.+
T Consensus        88 ~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  167 (582)
T PRK11176         88 CISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQL  167 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888889999999999999999999999999999999999999999999988888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          274 TLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMA  353 (510)
Q Consensus       274 ~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~  353 (510)
                      ++++++.+|+..++...+.++.++..++.++..++.++.+.|.++|++++|+++.|+++.++|++..+++.+...+..+.
T Consensus       168 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (582)
T PRK11176        168 SLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSA  247 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988888888878888888888888888999999999999999999999999999999999999999998888777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 010471          354 YGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS  433 (510)
Q Consensus       354 ~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e  433 (510)
                      .........++..+..++++++|++.+.+|++|+|+++++..+..++..|+..+...+..+.++..+.+|+.++++.+++
T Consensus       248 ~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~  327 (582)
T PRK11176        248 SSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQE  327 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            76666777777777777888999999999999999999999999999999999999999999999999999999987655


Q ss_pred             CCCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          434 NQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       434 ~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .+.  +....++..++|+|+||+|+|+++ ++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|+
T Consensus       328 ~~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~  401 (582)
T PRK11176        328 KDE--GKRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL  401 (582)
T ss_pred             CCC--CCcCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEE
Confidence            321  111122234679999999999864 35799999999999999999999999999999999999999999984

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=100.00  E-value=8.5e-48  Score=417.44  Aligned_cols=378  Identities=17%  Similarity=0.196  Sum_probs=313.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc-h-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          130 DKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-R-EEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLR  207 (510)
Q Consensus       130 ~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~-~-~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~~~lr  207 (510)
                      +|+.+..++++.++.+++.+..|++++..++... . .+...+......+.++.++..++.+++.+.......++..++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr   80 (529)
T TIGR02857         1 ARRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLR   80 (529)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566777888889999999889998887775431 1 1111111112223344455667788888888899999999999


Q ss_pred             HHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 010471          208 ETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSII  287 (510)
Q Consensus       208 ~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~l~~~~  287 (510)
                      .++|++++++|+++|++.++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|.+++++++..|+..++
T Consensus        81 ~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~  160 (529)
T TIGR02857        81 ERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIF  160 (529)
T ss_pred             HHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998888888888888888899999999999999999888887777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          288 VSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRS  367 (510)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  367 (510)
                      ...+.++.++..++.++..++.++.+.|+++|+++||+|+.|+++.++|++..+++.+...+..+..........++..+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (529)
T TIGR02857       161 MILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATL  240 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777788888888999999999999999999999999999999999999888877766665555666666655


Q ss_pred             HHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccCCCcc
Q 010471          368 TQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLM  447 (510)
Q Consensus       368 ~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~~~~~~  447 (510)
                      ..++++.++++.+.+|++++|.++++..+...+..|+..+...+..+.++..+.+|+.++++.++++. . ....+....
T Consensus       241 ~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~-~-~~~~~~~~~  318 (529)
T TIGR02857       241 SVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLA-G-KAPVTAAPA  318 (529)
T ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC-C-CcCCCCCCC
Confidence            65666667788888999999999999999999999999999999999999999999999998554322 1 111111123


Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ++|+|+||+|+||++ ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|+
T Consensus       319 ~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~  380 (529)
T TIGR02857       319 PSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA  380 (529)
T ss_pred             CeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence            579999999999864 35799999999999999999999999999999999999999999984

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=100.00  E-value=4.3e-47  Score=415.76  Aligned_cols=387  Identities=27%  Similarity=0.399  Sum_probs=333.7

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          121 SRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIAN  199 (510)
Q Consensus       121 ~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~  199 (510)
                      ++++++.+++++.++.++++.++.+++....|+++...++..... ....+......+.++.++..++.+++.+......
T Consensus         3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   82 (571)
T TIGR02203         3 RRLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVS   82 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777888999999999999999999888898877666433211 1111211122233445556677788888899999


Q ss_pred             HHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 010471          200 IVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALL  279 (510)
Q Consensus       200 ~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li  279 (510)
                      .++...+|..+++++++.|+++|++.+.|++.+|+++|++.+++.+...+..++..+..++++++++++++|.++++.++
T Consensus        83 ~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~  162 (571)
T TIGR02203        83 NKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVV  162 (571)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999989999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          280 ICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNM  359 (510)
Q Consensus       280 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (510)
                      ..|+..++..++.++.++..++.++..++.++.+.|.++|++++|.++.|+++.++|++..++..+...+..+..+....
T Consensus       163 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (571)
T TIGR02203       163 MLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSP  242 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998888888888888888888999999999999999999999999999999999999999999988888777777677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 010471          360 SFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE  439 (510)
Q Consensus       360 ~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~  439 (510)
                      +..++..+..++++++|++++.+|.+|+|.++++..+..++..|+..+...+..+.++..+.+|+.++++.+++++..  
T Consensus       243 ~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~--  320 (571)
T TIGR02203       243 ITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG--  320 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC--
Confidence            777777777888899999999999999999999999999999999999999999999999999999999876653311  


Q ss_pred             CccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          440 GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       440 ~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .....+..++|+++||+|+|+++ ++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|+
T Consensus       321 ~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~  390 (571)
T TIGR02203       321 TRAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL  390 (571)
T ss_pred             CCCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEE
Confidence            11112234689999999999864 35799999999999999999999999999999999999999999984

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=100.00  E-value=7.4e-47  Score=414.24  Aligned_cols=393  Identities=26%  Similarity=0.413  Sum_probs=327.1

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          118 IALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFS  196 (510)
Q Consensus       118 ~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~  196 (510)
                      +.+++++++++++++.+...+++.++.+++.++.|+++...++... ..+...+.....+.+++.++..+..+++.+...
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (576)
T TIGR02204         4 RPLAALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVT   83 (576)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4466778888889998888999999999999999998877775422 222111222222233333445556777888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 010471          197 IANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLS  276 (510)
Q Consensus       197 ~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li  276 (510)
                      .+..++...+|.+++++++++|.++|++.+.|++++|+++|++.+++.+...+..++..++.+++++++++.++|.++++
T Consensus        84 ~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  163 (576)
T TIGR02204        84 WLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSL  163 (576)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            88999999999999999999999999999999999999999999999988888888888988999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          277 ALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGL  356 (510)
Q Consensus       277 ~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (510)
                      +++..|+..++..++.++.++..+..++..++.++.+.|.++|+++||.++.|+++.++|++..++..+...+.......
T Consensus       164 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (576)
T TIGR02204       164 VLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRAL  243 (576)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99888888777777888888888888888999999999999999999999999999999999999888877776655555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 010471          357 WNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQF  436 (510)
Q Consensus       357 ~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~  436 (510)
                      ......++..+..++++++|++++.+|.+++|+++++..+..++..|+..+...+..+.++..+.+|+.++++.+++.+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~  323 (576)
T TIGR02204       244 LTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKA  323 (576)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCC
Confidence            45555555556667778899999999999999999999999999999999999999999999999999999987654221


Q ss_pred             CCCCc-cCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          437 LSEGV-KLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       437 ~~~~~-~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ..... .+.+..+.|+|+||+|+||+++++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|+
T Consensus       324 ~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~  398 (576)
T TIGR02204       324 PAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRIL  398 (576)
T ss_pred             CCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE
Confidence            11111 111234579999999999864446799999999999999999999999999999999999999999984

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=100.00  E-value=1.6e-46  Score=410.53  Aligned_cols=385  Identities=29%  Similarity=0.485  Sum_probs=327.7

Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          119 ALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIA  198 (510)
Q Consensus       119 ~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~  198 (510)
                      .+++++.+.+ ++ .+..+.+++++.+++.+..|.++...++... .+.........++.++.++..++.++..+...+.
T Consensus         3 ~~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   79 (567)
T COG1132           3 LLRRLLKYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALL-ADLGELLELLLLLLLLALLGGVLRALQSYLGSRL   79 (567)
T ss_pred             hHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666666 77 8888888899999999888888776664433 1111122222233344445666777777777788


Q ss_pred             HHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 010471          199 NIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSAL  278 (510)
Q Consensus       199 ~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~l  278 (510)
                      +.++..++|.++|++++++|+++|++.++|++++|+++|++.+++.+......+...++.+++.+++++..+|+++++.+
T Consensus        80 ~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~  159 (567)
T COG1132          80 GQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILL  159 (567)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999888666666788899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          279 LICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWN  358 (510)
Q Consensus       279 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (510)
                      +..|++.+....+.++.++..+..++..++.++.+.|+++|++++|+|+.++.+.+++++..++..+...+.....+...
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (567)
T COG1132         160 LILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLA  239 (567)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998888888888777888888899999999999999999999999999999999999999999888877776676666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 010471          359 MSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS  438 (510)
Q Consensus       359 ~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~  438 (510)
                      .....+......+++++|++.+..|.+++|++++|+.+..++..|+..+......+.++..+.+|++++++.+++..+..
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~  319 (567)
T COG1132         240 PLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPP  319 (567)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCC
Confidence            77788888888899999999999999999999999999999999999999999999999999999999999877643222


Q ss_pred             CCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          439 EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       439 ~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ..  .....++|+|+||+|+|++  ++++|+|+||+|+|||++|||||||||||||++||+|||+|++|+|+
T Consensus       320 ~~--~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~  387 (567)
T COG1132         320 DP--LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEIL  387 (567)
T ss_pred             CC--CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEE
Confidence            11  2334578999999999985  35799999999999999999999999999999999999999999985

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=9e-47  Score=444.66  Aligned_cols=383  Identities=19%  Similarity=0.208  Sum_probs=305.7

Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhh-hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          119 ALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREE-AM-VFHKSSRFLVLLCVTSGIFSGLRSGCFS  196 (510)
Q Consensus       119 ~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~-~~-~~~~~~~~l~~l~~~~~~~~~i~~~~~~  196 (510)
                      .+++++++++++++.++.+++++++.+.+....|+++...++.....+ .. .......++++++++..++.+++.++..
T Consensus       812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~  891 (1466)
T PTZ00265        812 NLRIVYREIFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNN  891 (1466)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778888899888999998889888888888888777764321111 00 0111122333445566777889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCcccccc--cCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 010471          197 IANIVLVKRLRETLYSALLFQDVYFFDT--EAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLT  274 (510)
Q Consensus       197 ~~~~~i~~~lr~~l~~~ll~lp~~ff~~--~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~  274 (510)
                      .+++++..++|.++|++++++|++||++  +++|++++|+++|++.+++.+...+..++..++.++++++++++++|.++
T Consensus       892 ~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~  971 (1466)
T PTZ00265        892 VIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVA  971 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999986  78999999999999999999998899999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHH
Q 010471          275 LSALLICSFLSIIVSVYGQYQKRAS-VL-----------------TQECNAHANNVAQETLCMMRTVRVYGTEEKELGRY  336 (510)
Q Consensus       275 li~li~~~l~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~  336 (510)
                      ++++++.+   ++...+.++.+... ++                 .++..++.+..+.|+++|++|||+|+.|+++.++|
T Consensus       972 l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~ 1048 (1466)
T PTZ00265        972 AVLTGTYF---IFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLI 1048 (1466)
T ss_pred             HHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHH
Confidence            87654433   33333333222111 11                 12335567889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          337 KIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQ  416 (510)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~  416 (510)
                      ++..++..+...+.....+....+...+..+..++++|+|++++..|.+++|++++++.+......++..++..+..+.+
T Consensus      1049 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 1128 (1466)
T PTZ00265       1049 EKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSEN 1128 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998888887777777777777777778888999999999999999999999876655444567778888999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCC-CCcc---CCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHH
Q 010471          417 SIGATEKVFQLIDLLPSNQFLS-EGVK---LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKS  492 (510)
Q Consensus       417 ~~~a~~rl~eil~~~~e~~~~~-~~~~---~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKS  492 (510)
                      +..+.+|++++++.+++.+..+ ++..   +....++|+|+||+|+||++++++||+|+||+|++||+|||||+||||||
T Consensus      1129 a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKS 1208 (1466)
T PTZ00265       1129 AKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKS 1208 (1466)
T ss_pred             HHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHH
Confidence            9999999999999876432111 1111   12345789999999999977666899999999999999999999999999


Q ss_pred             HHHHHHhcccCC
Q 010471          493 TFVNLLLRLYEP  504 (510)
Q Consensus       493 TL~kLL~g~y~p  504 (510)
                      ||++||+|||+|
T Consensus      1209 Tl~~LL~r~ydp 1220 (1466)
T PTZ00265       1209 TVMSLLMRFYDL 1220 (1466)
T ss_pred             HHHHHHHHhCCC
Confidence            999999999999

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=100.00  E-value=8.2e-47  Score=411.15  Aligned_cols=384  Identities=16%  Similarity=0.103  Sum_probs=302.9

Q ss_pred             HHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          119 ALSRMWNLIG-RDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSI  197 (510)
Q Consensus       119 ~l~~l~~~~~-~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~  197 (510)
                      ..++++++++ ++|+.++.+++++++.+++.+..|.++...++.....+..    ....+.++.++..++.+++.++...
T Consensus         4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~   79 (555)
T TIGR01194         4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLGQG----SLFSFGGLCLLALLFRIGADIFPAY   79 (555)
T ss_pred             hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccch----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4577788888 9999999999999999999988888776665422111110    1112333444556677888888888


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 010471          198 ANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSA  277 (510)
Q Consensus       198 ~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~  277 (510)
                      .+.++..++|.++|+|++++|+.+|++.++|++++|+++|++.+++++.. +..++..++.+++++++|++++|.+++++
T Consensus        80 ~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~  158 (555)
T TIGR01194        80 AGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAIT  158 (555)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            99999999999999999999999999999999999999999999998865 66777888888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          278 LLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEE--KELGRYKIWLEKLAFIRIRESMAYG  355 (510)
Q Consensus       278 li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~--~~~~~~~~~~~~~~~~~~~~~~~~~  355 (510)
                      ++.+|+.+++.....++.++..++.++..++.++.+.|.++|++++|+|+.++  ++.+++++..+++.+...+......
T Consensus       159 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (555)
T TIGR01194       159 ISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFI  238 (555)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            88888877776666666677777778888999999999999999999999954  5678888888888877666544433


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-
Q 010471          356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSN-  434 (510)
Q Consensus       356 ~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~-  434 (510)
                      .......++..+...+.+++|++.   |.+++|++++|+.|...+..|+..+++.+..+.++..+.+|+.++++.++++ 
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~  315 (555)
T TIGR01194       239 AAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPE  315 (555)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            333333333333333334444443   7899999999999999999999999999999999999999999998642211 


Q ss_pred             CC--CCC-Cc----cCCCccccEEEEeeeEECCCCC--CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471          435 QF--LSE-GV----KLQRLMGHVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS  505 (510)
Q Consensus       435 ~~--~~~-~~----~~~~~~~~I~f~nVsF~Y~~~~--~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~  505 (510)
                      ..  .++ ..    .+....++|+|+||+|+|++.+  ++++|+|+||+|++||++|||||||||||||+++|+|+|+|+
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~  395 (555)
T TIGR01194       316 PELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ  395 (555)
T ss_pred             ccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            10  011 00    1112246899999999998532  236999999999999999999999999999999999999999


Q ss_pred             CceeC
Q 010471          506 DGQVC  510 (510)
Q Consensus       506 sG~I~  510 (510)
                      +|+|+
T Consensus       396 ~G~i~  400 (555)
T TIGR01194       396 EGEIL  400 (555)
T ss_pred             CcEEE
Confidence            99984

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=4.5e-46  Score=409.09  Aligned_cols=390  Identities=22%  Similarity=0.268  Sum_probs=315.6

Q ss_pred             chHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhch-hhhHHHH--HHHHHHHHHHHHHHHHHHHH
Q 010471          115 TVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR-EEAMVFH--KSSRFLVLLCVTSGIFSGLR  191 (510)
Q Consensus       115 ~~~~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~-~~~~~~~--~~~~~l~~l~~~~~~~~~i~  191 (510)
                      .+|+.++++..+.+++++.+...+++.++.+++.+..|.++...++.... .+.....  ....+++++.++..++.+++
T Consensus         6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (592)
T PRK10790          6 QLWPTLKRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQ   85 (592)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777888888888899988888899999999999999988777754321 1211110  00111222233455567778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010471          192 SGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSW  271 (510)
Q Consensus       192 ~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~  271 (510)
                      .+.......++..++|.++|+++++.|+++|++.++|++++|+++|++.+++.+...+..++..+..++++++++++++|
T Consensus        86 ~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (592)
T PRK10790         86 SLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDW  165 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888899999999999999999999999999999999999999999999999888888898888889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q 010471          272 PLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRES  351 (510)
Q Consensus       272 ~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~  351 (510)
                      .++++.+++.|+++++...+.++.++..++.++..++.++.+.|+++|+++||+|+.|+++.+++++..++..+...+..
T Consensus       166 ~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (592)
T PRK10790        166 RMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTL  245 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888888877777777777777777777888888999999999999999999999999999999988888776665


Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010471          352 MAYGLW-NMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL  430 (510)
Q Consensus       352 ~~~~~~-~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~  430 (510)
                      +..+.. .....++..+..++++++++. +..|.+++|.+++++.|...+..|+..+...+..+.++..+.+|+.++++.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~  324 (592)
T PRK10790        246 RLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDG  324 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            444432 233333333333333344444 689999999999999999999999999999999999999999999999987


Q ss_pred             CCCCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          431 LPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       431 ~~e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ++++..  .. ......++|+|+||+|+||++  +++|+|+||+|++||++||||+||||||||+|+|+|+|+|++|+|+
T Consensus       325 ~~~~~~--~~-~~~~~~~~i~~~~v~f~y~~~--~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~  399 (592)
T PRK10790        325 PRQQYG--ND-DRPLQSGRIDIDNVSFAYRDD--NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR  399 (592)
T ss_pred             CCccCC--CC-ccCCCCCeEEEEEEEEEeCCC--CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE
Confidence            654221  11 112234679999999999842  5799999999999999999999999999999999999999999984

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=1.7e-46  Score=442.36  Aligned_cols=388  Identities=20%  Similarity=0.264  Sum_probs=325.2

Q ss_pred             HHHHHHhh-hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          120 LSRMWNLI-GRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIA  198 (510)
Q Consensus       120 l~~l~~~~-~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~  198 (510)
                      +.++++|. +++++.++.+++++++.+++....|.+++..++.....+.  .......++++.++..++.+++.++...+
T Consensus        47 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  124 (1466)
T PTZ00265         47 FFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGEN--VNDIIFSLVLIGIFQFILSFISSFCMDVV  124 (1466)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666665 5678888999999999998888888887777754321111  11112233444555667788999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 010471          199 NIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSAL  278 (510)
Q Consensus       199 ~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~l  278 (510)
                      +.++..++|.++|++++++|++|||+...|++++|+++|++.+++.++..+..++..++++++.++++++++|+|+++++
T Consensus       125 ~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l  204 (1466)
T PTZ00265        125 TTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCIT  204 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          279 LICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWN  358 (510)
Q Consensus       279 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (510)
                      +.+|+++++..++.++.++..+..++..++.++.+.|+++|+++||+|+.|+++.++|++..+++.+...+.....+...
T Consensus       205 ~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~  284 (1466)
T PTZ00265        205 CVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHI  284 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988888888888888888888889999999999999999999999999999999999999988888877777766


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC--------ccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010471          359 MSFITLYRSTQVMAVLLGGMSIMIG--------QVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL  430 (510)
Q Consensus       359 ~~~~~l~~~~~v~~l~~g~~lv~~g--------~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~  430 (510)
                      ....++..+..++++|+|++++.+|        .+++|+++++..+.......+..+...+..+.++..|++|++++++.
T Consensus       285 ~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~  364 (1466)
T PTZ00265        285 GMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINR  364 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            6777777777888899999999986        57889988876665544445556666788899999999999999998


Q ss_pred             CCCCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          431 LPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       431 ~~e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      +++.+...++...+ ..++|+|+||+|+||++++.++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|+
T Consensus       365 ~~~~~~~~~~~~~~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~  443 (1466)
T PTZ00265        365 KPLVENNDDGKKLK-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDII  443 (1466)
T ss_pred             CCCCCCCCCCccCC-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEE
Confidence            77643211211112 22479999999999876555799999999999999999999999999999999999999999984

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=100.00  E-value=7e-46  Score=407.12  Aligned_cols=390  Identities=16%  Similarity=0.201  Sum_probs=316.1

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          117 WIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFS  196 (510)
Q Consensus       117 ~~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~  196 (510)
                      .+.++++++++++++..+...+++.++..++.++.|+++...++...... . .......+.++.++..+..++......
T Consensus         4 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (588)
T PRK13657          4 FRLYARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG-D-IFPLLAAWAGFGLFNIIAGVLVARHAD   81 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-c-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677788888889998889999999999999999988777775432211 1 111111111112222223333444444


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 010471          197 IANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLS  276 (510)
Q Consensus       197 ~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li  276 (510)
                      ....++..+++.++|++++++|+.+|++.++|++++|+++|++++.+.+...+..++..++..++.+++++.++|+++++
T Consensus        82 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~  161 (588)
T PRK13657         82 RLAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLV  161 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666777899999999999999999999999999999999998877777777777777888888899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          277 ALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGL  356 (510)
Q Consensus       277 ~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (510)
                      ++++.++..++...+.++.++..++.++..++.++.+.|.++|++++|.|+.++++.+++++..++..+...+.....+.
T Consensus       162 ~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (588)
T PRK13657        162 LVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWAL  241 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99888888888888878788888888888899999999999999999999999999999999999999888877666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 010471          357 WNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQF  436 (510)
Q Consensus       357 ~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~  436 (510)
                      ......++..+..++++++|++++.+|++++|+++++..+...+..|+..+...+..+.++..+.+|+.++++.+++.+.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~  321 (588)
T PRK13657        242 ASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRD  321 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC
Confidence            66666666677778888999999999999999999999999999999999999999999999999999999987554321


Q ss_pred             CCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          437 LSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       437 ~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ..+........+.|+++||+|+||++  +++|+|+|++++|||++||||+||||||||+|+|+|+|+|++|+|+
T Consensus       322 ~~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~  393 (588)
T PRK13657        322 PPGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL  393 (588)
T ss_pred             CCCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence            11111112234579999999999853  4699999999999999999999999999999999999999999984

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=5.9e-46  Score=405.75  Aligned_cols=368  Identities=21%  Similarity=0.318  Sum_probs=299.5

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhhchh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 010471          140 SLIVAAVSEITMPRILAEAVFSAQRE--EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQ  217 (510)
Q Consensus       140 ~~i~~~l~~l~~P~~~~~~i~~~~~~--~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~l  217 (510)
                      +.++.+++.+..|++++..++.....  +...+......++++.++..++.+++.+.......++..++|.++|++++++
T Consensus         3 ~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~   82 (569)
T PRK10789          3 LLIIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQ   82 (569)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            34555666667888877776543211  1111111111222233344556677777777888999999999999999999


Q ss_pred             CcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          218 DVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINL-LTLSWPLTLSALLICSFLSIIVSVYGQYQK  296 (510)
Q Consensus       218 p~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l-~~~s~~l~li~li~~~l~~~~~~~~~~~~~  296 (510)
                      |+++|+++++|++++|+++|++.++..+...+..++..++..++.++++ +.++|+++++++++.|++.++...+.++.+
T Consensus        83 ~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~  162 (569)
T PRK10789         83 HPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLH  162 (569)
T ss_pred             CHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999887777777777766666666666 589999999999998888888888878877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          297 RASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLG  376 (510)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g  376 (510)
                      +..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+..+........+..+..++++++|
T Consensus       163 ~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g  242 (569)
T PRK10789        163 ERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGG  242 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888888889999999999999999999999999999999999999888888766666665655666666677788899


Q ss_pred             HHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccCCCccccEEEEeee
Q 010471          377 GMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNIS  456 (510)
Q Consensus       377 ~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~~~~~~~~I~f~nVs  456 (510)
                      ++++.+|++|+|+++++..|...+..|+..+...+..+.++..+.+|+.++++.+++.+..  ....+...++|+|+||+
T Consensus       243 ~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~--~~~~~~~~~~I~~~~v~  320 (569)
T PRK10789        243 SWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG--SEPVPEGRGELDVNIRQ  320 (569)
T ss_pred             HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--CCCCCCCCCcEEEEEEE
Confidence            9999999999999999999999999999999999999999999999999999876553211  11112234679999999


Q ss_pred             EECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          457 FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       457 F~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+
T Consensus       321 ~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~  373 (569)
T PRK10789        321 FTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIR  373 (569)
T ss_pred             EECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEE
Confidence            999853 35799999999999999999999999999999999999999999984

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.8e-47  Score=425.06  Aligned_cols=334  Identities=29%  Similarity=0.414  Sum_probs=298.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 010471          177 LVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNS  256 (510)
Q Consensus       177 l~~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~  256 (510)
                      ...+.++..+..+++..+..+.+.|...++|.++++++||++++|||++.+|++.+|+++|++.+++.+++.+..++..+
T Consensus        77 ~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~  156 (1228)
T KOG0055|consen   77 FVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLL  156 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHH
Confidence            33445556667788888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHH
Q 010471          257 LQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRY  336 (510)
Q Consensus       257 ~~~i~~li~l~~~s~~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~  336 (510)
                      .++++.+++.|++.|+|+++.+...|++.+....+.+...+...+.++..+++.+.+.|+++++|||.+|+.|+++.++|
T Consensus       157 ~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry  236 (1228)
T KOG0055|consen  157 ATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERY  236 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHH
Confidence            99999999999999999999999999999999999998999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          337 KIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQ  416 (510)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~  416 (510)
                      ++.++...+...+...+.++....+.++..+.....+|+|+.++.++..+.|+++..+.....-...+......+..+..
T Consensus       237 ~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~  316 (1228)
T KOG0055|consen  237 SKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAK  316 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhc
Confidence            99999999999999888888888888888888899999999999999999998766544333333445555667778889


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCC-CCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHH
Q 010471          417 SIGATEKVFQLIDLLPSNQFLS-EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFV  495 (510)
Q Consensus       417 ~~~a~~rl~eil~~~~e~~~~~-~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~  495 (510)
                      +.+|+.+++|.++..|..+... ++......+|+|+|+||+|+||+||+.++|+|+||+||+||+|||||+|||||||++
T Consensus       317 a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i  396 (1228)
T KOG0055|consen  317 ARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLI  396 (1228)
T ss_pred             cccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHH
Confidence            9999999999999988754322 122234467999999999999999988999999999999999999999999999999


Q ss_pred             HHHhcccCCCCceeC
Q 010471          496 NLLLRLYEPSDGQVC  510 (510)
Q Consensus       496 kLL~g~y~p~sG~I~  510 (510)
                      +||+|||+|++|+|+
T Consensus       397 ~LL~RfydP~~G~V~  411 (1228)
T KOG0055|consen  397 QLLARFYDPTSGEVL  411 (1228)
T ss_pred             HHHHHhcCCCCceEE
Confidence            999999999999984

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=100.00  E-value=5.9e-45  Score=396.14  Aligned_cols=373  Identities=16%  Similarity=0.156  Sum_probs=303.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          128 GRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRL  206 (510)
Q Consensus       128 ~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~~~l  206 (510)
                      +++++.++..++++++.+++.+..|+++...++... ..+...+......++++.++..++.+++.+.....+.++..++
T Consensus         2 ~~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   81 (544)
T TIGR01842         2 SKNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGAL   81 (544)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567788888889999999999999998887776432 1221111111222233344556677888888888999999999


Q ss_pred             HHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 010471          207 RETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGN-DINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLS  285 (510)
Q Consensus       207 r~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~-~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~l~~  285 (510)
                      |.++|+|++++|+.     +.++..+++++|++.+++.+.. .+..++..++ .++.+++++.++|+++++++++.|++.
T Consensus        82 r~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~l~~~~l~~  155 (544)
T TIGR01842        82 NQPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPW-MPIYLLVCFLLHPWIGILALGGAVVLV  155 (544)
T ss_pred             HHHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            99999999999984     3467788999999999998766 4555554444 344556789999999999988888877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          286 IIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLY  365 (510)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  365 (510)
                      ++..++.+..++..++.++..++.++.+.|+++|+++||+|+.|+.+.++|++..+++.+...+.....+........+.
T Consensus       156 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (544)
T TIGR01842       156 GLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFR  235 (544)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77666777777777888888999999999999999999999999999999999999998888777666666666666666


Q ss_pred             HHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccCCC
Q 010471          366 RSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQR  445 (510)
Q Consensus       366 ~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~~~~  445 (510)
                      ....++++++|++++.+|++|+|++++++.+...+..|+..+...+..+.++..+.+|+.++++.+++.+.  .. ..+.
T Consensus       236 ~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~--~~-~~~~  312 (544)
T TIGR01842       236 IVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP--AM-PLPE  312 (544)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC--CC-CCCC
Confidence            66777788999999999999999999999999999999999999999999999999999999987655321  11 1122


Q ss_pred             ccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       446 ~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .++.|+++||+|+||++ ++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|+
T Consensus       313 ~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~  376 (544)
T TIGR01842       313 PEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR  376 (544)
T ss_pred             CCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence            34679999999999853 35799999999999999999999999999999999999999999873

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=1.8e-42  Score=412.03  Aligned_cols=368  Identities=17%  Similarity=0.171  Sum_probs=283.3

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHhhc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 010471          139 ASLIVAAVSEITMPRILAEAVFSAQ-REEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQ  217 (510)
Q Consensus       139 l~~i~~~l~~l~~P~~~~~~i~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~l  217 (510)
                      ++.++..++.+..|+++..+.+... ..+............++.++..++.+++.++....+.+...++|.+++++++++
T Consensus       972 ~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~ 1051 (1522)
T TIGR00957       972 FLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRS 1051 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3334445555566766665553211 111000001112233344455566677777778888999999999999999999


Q ss_pred             CcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          218 DVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKR  297 (510)
Q Consensus       218 p~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~l~~~~~~~~~~~~~~  297 (510)
                      |++||++.++|++++|+++|++.+++.+...+..++..++.+++.++++++.+|.++++++++++++.++.+++.+..++
T Consensus      1052 p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 1131 (1522)
T TIGR00957      1052 PMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQ 1131 (1522)
T ss_pred             ChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999899988777766666666666777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          298 ASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGG  377 (510)
Q Consensus       298 ~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~  377 (510)
                      ..+...+..+...+.+.|+++|++|||+|+.|+++.+++.+..+...+..........+......++   ..++++++++
T Consensus      1132 ~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 1208 (1522)
T TIGR00957      1132 LKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECV---GNCIVLFAAL 1208 (1522)
T ss_pred             HHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            7777777888999999999999999999999999888888887777665544332222222222222   2234445555


Q ss_pred             HHHh-cCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC-ccC--CCccccEEEE
Q 010471          378 MSIM-IGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEG-VKL--QRLMGHVQFV  453 (510)
Q Consensus       378 ~lv~-~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~-~~~--~~~~~~I~f~  453 (510)
                      ..+. .|.++.|.+.+++.|..++..++..+...+.++.++..|.+|+.|+++.++|++...++ ..+  .+.+|+|+|+
T Consensus      1209 ~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~ 1288 (1522)
T TIGR00957      1209 FAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFR 1288 (1522)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEE
Confidence            5554 58899999999999999999999999999999999999999999999877664311111 111  1356899999


Q ss_pred             eeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       454 nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ||+|+|++++ ++||+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|+
T Consensus      1289 nVsf~Y~~~~-~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~ 1344 (1522)
T TIGR00957      1289 NYCLRYREDL-DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEII 1344 (1522)
T ss_pred             EEEEEeCCCC-cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEE
Confidence            9999998543 4799999999999999999999999999999999999999999984

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=100.00  E-value=3.4e-42  Score=374.59  Aligned_cols=374  Identities=17%  Similarity=0.112  Sum_probs=274.5

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          123 MWNLIGRDKWIVLVAVASLIVAAVSEITM-PRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIV  201 (510)
Q Consensus       123 l~~~~~~~~~~l~~~~l~~i~~~l~~l~~-P~~~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~  201 (510)
                      ++++++++++.++..++++++.+++.+.. |++....++.... +...    ...+.++.++..++.+++.+.....+.+
T Consensus         4 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (547)
T PRK10522          4 LRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADT-SLLV----LPEFLGLLLLLMAVTLGSQLALTTLGHH   78 (547)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567788998899999999998888775 4444445543211 1111    1111122222344567788888889999


Q ss_pred             HHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 010471          202 LVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLIC  281 (510)
Q Consensus       202 i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~  281 (510)
                      +..++|.++|++++++|+++|+++++||+++|+++|++.++..+. .+..++..++.+++++++|++++|+++++++++.
T Consensus        79 ~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~  157 (547)
T PRK10522         79 FVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTAIWM  157 (547)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998665 4677788888899999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          282 SFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTE---EKELGRYKIWLEKLAFIRIRESMAYGLWN  358 (510)
Q Consensus       282 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (510)
                      |+..++...+.++.++..++.++..++.++.+.|.++|+++++ ++.+   +.+.+++++..++..+...+.........
T Consensus       158 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (547)
T PRK10522        158 AVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSAV  236 (547)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence            8887777777777777777788888999999999999999996 4444   35577888888777766555443333222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 010471          359 MSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS  438 (510)
Q Consensus       359 ~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~  438 (510)
                      .....+..+...+.+++++..   +..+.+.+..+..+...+..|+..+...+..+.++..+.+|+.++++.+++++.. 
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~-  312 (547)
T PRK10522        237 NWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFP-  312 (547)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc-
Confidence            222222111111122223221   1123334444444444566899999999999999999999999997654432211 


Q ss_pred             CCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          439 EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       439 ~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      +. .+.+..++|+|+||+|+||++  +++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|+
T Consensus       313 ~~-~~~~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~  381 (547)
T PRK10522        313 RP-QAFPDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEIL  381 (547)
T ss_pred             cc-cccCcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence            11 111123579999999999843  4699999999999999999999999999999999999999999984

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-41  Score=348.97  Aligned_cols=383  Identities=19%  Similarity=0.184  Sum_probs=295.0

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh-chhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          125 NLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSA-QREEAMVFHKSSR--FLVLLCVTSGIFSGLRSGCFSIANIV  201 (510)
Q Consensus       125 ~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~-~~~~~~~~~~~~~--~l~~l~~~~~~~~~i~~~~~~~~~~~  201 (510)
                      +..+++|+.+..+++++++..+..+..-...+..+... ..+....+.-...  ..=++.+.+.+..+.-....+....+
T Consensus         9 ~l~~~~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~Atfr   88 (573)
T COG4987           9 RLYKRHKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDATFR   88 (573)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            33344777888888888887777766554444444221 1111112211000  11134455666666666666778889


Q ss_pred             HHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 010471          202 LVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLIC  281 (510)
Q Consensus       202 i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~  281 (510)
                      +...+|.++|+++...++.-..+.++||+++|++.|++.+++.+-..+...+..++...+..+.+.++||.+++......
T Consensus        89 vL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~l  168 (573)
T COG4987          89 VLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLIL  168 (573)
T ss_pred             HHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998888888888888888888899999988765554


Q ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          282 SF-LSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMS  360 (510)
Q Consensus       282 ~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (510)
                      .+ ..++..++.++.++..+...+..+...+...|.+.|..+.+.||+++.+.+.+++..+.+.+.+.+..+..+.....
T Consensus       169 l~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~  248 (573)
T COG4987         169 LLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAI  248 (573)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43 34455667777788888888888899999999999999999999999999999999999999999988888777787


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 010471          361 FITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMV-DNLSSLLQSIGATEKVFQLIDLLPSNQFLSE  439 (510)
Q Consensus       361 ~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~  439 (510)
                      ..++.....+..+.+.+..+-.|..+.....++++.......++..+. ..+..+.+...|++|+.++.+.+|+..++ +
T Consensus       249 ~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~-~  327 (573)
T COG4987         249 LLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFP-D  327 (573)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCC-c
Confidence            777777666644444445677787775544444444444455555555 56688889999999999999998886644 1


Q ss_pred             CccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          440 GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       440 ~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      . +.+.....++++||||+||++ +.++|+|+||++++||+|||+|+|||||||+++||+|.|||++|+|+
T Consensus       328 ~-~~~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~  396 (573)
T COG4987         328 E-QTATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSIT  396 (573)
T ss_pred             c-ccCCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeee
Confidence            1 122222389999999999976 36899999999999999999999999999999999999999999985

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=100.00  E-value=3.2e-42  Score=380.83  Aligned_cols=392  Identities=13%  Similarity=0.060  Sum_probs=311.5

Q ss_pred             hHHHHHHHHHhhhhhHH-----HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhhhHHHHHHHH----HHHHHHHHHHH
Q 010471          116 VWIALSRMWNLIGRDKW-----IVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSR----FLVLLCVTSGI  186 (510)
Q Consensus       116 ~~~~l~~l~~~~~~~~~-----~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~~~~~~~~----~l~~l~~~~~~  186 (510)
                      +++.+++++++++||++     .++.++++.++.+++.+..|.+.+..++.....+...+.....    +++...++..+
T Consensus        75 ~~~~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~  154 (659)
T TIGR00954        75 FLGKLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSA  154 (659)
T ss_pred             HHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667788899999886     6778888888889999999998887776543333222221111    11222334445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          187 FSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINL  266 (510)
Q Consensus       187 ~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l  266 (510)
                      ..+++.++......++..+++.+.+++....+..|||+ ++|++.+|+++|++.+++.+...+..++..++.++++++.|
T Consensus       155 ~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L  233 (659)
T TIGR00954       155 IKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKL  233 (659)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666677777888888888888888899999987 89999999999999999999999999999999999888888


Q ss_pred             HH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHH
Q 010471          267 LT-LSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAF  345 (510)
Q Consensus       267 ~~-~s~~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~  345 (510)
                      +. ++|.+++++++..|+..++.+.+.++.++..++.++..++.++...|.++|+++||+|+.|+.+.+++++..+++.+
T Consensus       234 ~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~  313 (659)
T TIGR00954       234 LTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVE  313 (659)
T ss_pred             HHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            86 99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHh-c----CccCHhHHHH-HHHH---HHHHHHHHHHHHHHHHHH
Q 010471          346 IRIRESMAYGLWNMSFITLYRS-TQVMAV-LLGGMSIM-I----GQVSPEQLTK-YVLY---CEWLIYATWRMVDNLSSL  414 (510)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~l~~~-~~v~~l-~~g~~lv~-~----g~is~G~l~a-f~~~---~~~~~~~~~~l~~~~~~~  414 (510)
                      ...+..+..+....+..++... ...+.+ +.|+..+. .    |.+|.|.+++ |+.+   ..++..|+..++....++
T Consensus       314 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i  393 (659)
T TIGR00954       314 HLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDM  393 (659)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988877777777776666542 222333 33332222 2    7899998776 6655   456688999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCC--------CC--CC-------------ccCCCccccEEEEeeeEECCCCCCCCccccc
Q 010471          415 LQSIGATEKVFQLIDLLPSNQF--------LS--EG-------------VKLQRLMGHVQFVNISFHYPSRPTVPILNHV  471 (510)
Q Consensus       415 ~~~~~a~~rl~eil~~~~e~~~--------~~--~~-------------~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~ni  471 (510)
                      .++.++.+|++|+++.+++.+.        .+  +.             .......+.|+++||+|+||++  +++|+|+
T Consensus       394 ~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~i  471 (659)
T TIGR00954       394 TRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESL  471 (659)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--Ceeeecc
Confidence            9999999999999976433110        00  00             0011133579999999999743  4699999


Q ss_pred             eEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       472 sltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ||+|++||++|||||||||||||+++|+|+|+|++|+|.
T Consensus       472 sl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~  510 (659)
T TIGR00954       472 SFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLT  510 (659)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEe
Confidence            999999999999999999999999999999999999873

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-40  Score=345.75  Aligned_cols=333  Identities=18%  Similarity=0.215  Sum_probs=292.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 010471          176 FLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRN  255 (510)
Q Consensus       176 ~l~~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~  255 (510)
                      .+.+..++.+++.+.+.......+..+..++|.++++|+.++++.+-...++|+.++.+...+++++..++..++..+..
T Consensus        45 ~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~  124 (559)
T COG4988          45 LLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLS  124 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455567788888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHH
Q 010471          256 SLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGR  335 (510)
Q Consensus       256 ~~~~i~~li~l~~~s~~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~  335 (510)
                      .+.....++.++++||.-+++.+++.|++.+.+.+.+...++..+++.+.....++...|.++|+.|+|.|++.++..++
T Consensus       125 ~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~  204 (559)
T COG4988         125 AIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEER  204 (559)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CccCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          336 YKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSL  414 (510)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~-g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~  414 (510)
                      ..+..+++++.+++.-+..=.......++..++..++..+.+..... |+++......++...--+..|+..++..+..-
T Consensus       205 i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~  284 (559)
T COG4988         205 IRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAA  284 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            99999999999988743322233667777777777776777777777 89999988888888888999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCC-ccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHH
Q 010471          415 LQSIGATEKVFQLIDLLPSNQFLSEG-VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKST  493 (510)
Q Consensus       415 ~~~~~a~~rl~eil~~~~e~~~~~~~-~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKST  493 (510)
                      +.+.+|.++++.+++.+++....... .......-+|+.+|++|+||+.  +++++|+||+++|||++||||+|||||||
T Consensus       285 ~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKST  362 (559)
T COG4988         285 AAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKST  362 (559)
T ss_pred             hhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHH
Confidence            99999999999999987764322111 1112223356666999999865  37999999999999999999999999999


Q ss_pred             HHHHHhcccCCCCceeC
Q 010471          494 FVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       494 L~kLL~g~y~p~sG~I~  510 (510)
                      |+++|+||++|++|+|+
T Consensus       363 Ll~lL~G~~~~~~G~I~  379 (559)
T COG4988         363 LLNLLLGFLAPTQGEIR  379 (559)
T ss_pred             HHHHHhCcCCCCCceEE
Confidence            99999999999999984

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=2e-40  Score=393.80  Aligned_cols=324  Identities=15%  Similarity=0.160  Sum_probs=253.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          186 IFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFIN  265 (510)
Q Consensus       186 ~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~  265 (510)
                      +..+++.........+...++|.+++++++++|+.|||++++|++++|+++|++.+++.+...+..++..++.+++.+++
T Consensus      1013 ~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~ 1092 (1560)
T PTZ00243       1013 FSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILV 1092 (1560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444445555667789999999999999999999999999999999999999999999899899999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHH
Q 010471          266 LLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAF  345 (510)
Q Consensus       266 l~~~s~~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~  345 (510)
                      +++.+|.+.++++.+..++..+...+.+..++..+...+..+...+.+.|+++|++|||+|+.|+++.+++.+..++..+
T Consensus      1093 ~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~ 1172 (1560)
T PTZ00243       1093 TSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYS 1172 (1560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence            99888865544433333344445566666677777777788889999999999999999999999999999999988887


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          346 IRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSI--MIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEK  423 (510)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv--~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~r  423 (510)
                      ...+......+......++..+..+++.+++...+  ..+.+++|.+..++.|..++..++..+...+..+.+++.+.+|
T Consensus      1173 ~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eR 1252 (1560)
T PTZ00243       1173 CSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVER 1252 (1560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76665433333334444444444333344444333  3456889999888999999999999999999999999999999


Q ss_pred             HHHhhcCCCCCCCCC-------------------------CCc-----cCCCccccEEEEeeeEECCCCCCCCccccceE
Q 010471          424 VFQLIDLLPSNQFLS-------------------------EGV-----KLQRLMGHVQFVNISFHYPSRPTVPILNHVCL  473 (510)
Q Consensus       424 l~eil~~~~e~~~~~-------------------------~~~-----~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisl  473 (510)
                      +.++++..|+++...                         +..     ...+..|+|+|+||+|+|+++ .++||+||||
T Consensus      1253 i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf 1331 (1560)
T PTZ00243       1253 LLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVSF 1331 (1560)
T ss_pred             HHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecceE
Confidence            999997543321000                         000     011235789999999999754 3469999999


Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      +|+|||+|||||+||||||||+++|+|+|+|++|+|+
T Consensus      1332 ~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~ 1368 (1560)
T PTZ00243       1332 RIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIR 1368 (1560)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence            9999999999999999999999999999999999984

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-40  Score=339.60  Aligned_cols=389  Identities=20%  Similarity=0.269  Sum_probs=306.4

Q ss_pred             HHHHHHHHHhhhh----h-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhh--hHHHHHHHHHH---HHHHHHHHH
Q 010471          117 WIALSRMWNLIGR----D-KWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREE--AMVFHKSSRFL---VLLCVTSGI  186 (510)
Q Consensus       117 ~~~l~~l~~~~~~----~-~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~--~~~~~~~~~~l---~~l~~~~~~  186 (510)
                      +...+.+..+.++    + +.+.+.++.+.+.+-++...+|+++...++.....+  +..+......+   .+.-+.+.+
T Consensus        10 ~~~~~~l~~~~~~k~~p~~r~~v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~   89 (591)
T KOG0057|consen   10 LKILRSLVSYKWPKSRPVLRFRVFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSV   89 (591)
T ss_pred             hHHHHHHHhhheecCCceeeehHHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHH
Confidence            3555666655544    3 345555555555557888889998877775542111  11121111112   223345667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 010471          187 FSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAF-IN  265 (510)
Q Consensus       187 ~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~l-i~  265 (510)
                      +..++...+..+.+++..+.-+++|+++++++.++|.+..+|++.+.+.+.+..|+.++...+..++..++-+.... .+
T Consensus        90 F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l  169 (591)
T KOG0057|consen   90 FNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGIL  169 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78889999999999999999999999999999999999999999999999999999988877777766655444333 33


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHH
Q 010471          266 LLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAF  345 (510)
Q Consensus       266 l~~~s~~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~  345 (510)
                      -.-+.+..+++++.....+.........++.+..+++..+..++...+.|++.+.++||+||.|++|.++|.+.+.++.+
T Consensus       170 ~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~  249 (591)
T KOG0057|consen  170 YYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYER  249 (591)
T ss_pred             HHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence            34566777777777766666655556667777777788888888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          346 IRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVF  425 (510)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~  425 (510)
                      ...+.....+..+.....+.......+.+.|+.-+.+|.++.|+++....+..++..|++.++..+.++.++...++.++
T Consensus       250 ~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~  329 (591)
T KOG0057|consen  250 AGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLF  329 (591)
T ss_pred             hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHH
Confidence            99998878888888877777777777778888888999999999999999999999999999999999999999998888


Q ss_pred             HhhcCCCCCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471          426 QLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS  505 (510)
Q Consensus       426 eil~~~~e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~  505 (510)
                      -..+...+.++.  .......++.|+|+||+|+|+  |+++||+++||+||+||+|||||+|||||||++++|+|||| +
T Consensus       330 ~l~~~~~~i~~~--~~~i~~~~~~I~F~dV~f~y~--~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~  404 (591)
T KOG0057|consen  330 ILLEVDEDIQEA--ALPIELFGGSIEFDDVHFSYG--PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-Y  404 (591)
T ss_pred             hhhhhhhhhhhc--cCCcccCCCcEEEEeeEEEeC--CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-c
Confidence            776543332211  112223457899999999997  34679999999999999999999999999999999999999 9


Q ss_pred             CceeC
Q 010471          506 DGQVC  510 (510)
Q Consensus       506 sG~I~  510 (510)
                      +|+|+
T Consensus       405 sG~I~  409 (591)
T KOG0057|consen  405 SGSIL  409 (591)
T ss_pred             CCcEE
Confidence            99985

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=4e-40  Score=391.80  Aligned_cols=365  Identities=19%  Similarity=0.225  Sum_probs=252.1

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhhch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010471          138 VASLIVAAVSEITMPRILAEAVFSAQR-EEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLF  216 (510)
Q Consensus       138 ~l~~i~~~l~~l~~P~~~~~~i~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~  216 (510)
                      +++.++..++.+..++++..+.+.... .+...+  ......++.++..++.+++.++....+.+...++|.++++++++
T Consensus       921 ~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~--~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~  998 (1622)
T PLN03130        921 FLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLF--YNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILR  998 (1622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccCCCchhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            344444455555566666655532211 111111  11223344455666778888888889999999999999999999


Q ss_pred             CCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 010471          217 QDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFL-SIIVSVYGQYQ  295 (510)
Q Consensus       217 lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~l~-~~~~~~~~~~~  295 (510)
                      +|++||+++++|++++|+++|++.+++.+...+..++..++.+++.++++++++|...+ ++++++++ .....++.+..
T Consensus       999 ~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~-~~~pl~~~~~~~~~~~~~~~ 1077 (1622)
T PLN03130        999 APMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLW-AIMPLLVLFYGAYLYYQSTA 1077 (1622)
T ss_pred             CCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999899888888888874333 33333322 22333444555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 010471          296 KRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWN-MSFITLYRSTQVMAVL  374 (510)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~v~~l~  374 (510)
                      ++..+...+..+...+.+.|+++|++|||+|+.++++.+++++..+..    .+........+ +....+..+..+++++
T Consensus      1078 r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~----~~~~~~~~~~~~wl~~~l~~~~~~~i~~ 1153 (1622)
T PLN03130       1078 REVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNN----IRFTLVNMSSNRWLAIRLETLGGLMIWL 1153 (1622)
T ss_pred             HHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566666666778889999999999999999999886665555444433    33322222111 1111111222233333


Q ss_pred             HHHHHHhcCc-cC-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-CCCccC--CC
Q 010471          375 LGGMSIMIGQ-VS-----PEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL-SEGVKL--QR  445 (510)
Q Consensus       375 ~g~~lv~~g~-is-----~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~-~~~~~~--~~  445 (510)
                      .+...+..+. ..     .+.+..++.|...+..++..+...+..+.++..+.||+.|+++.++|+... ++...+  .+
T Consensus      1154 ~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp 1233 (1622)
T PLN03130       1154 TASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWP 1233 (1622)
T ss_pred             HHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCC
Confidence            4444454432 11     233333444555666667777778888899999999999999887764321 111111  23


Q ss_pred             ccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       446 ~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .+|+|+|+||+|+|+++ .++||+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|+
T Consensus      1234 ~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~ 1297 (1622)
T PLN03130       1234 SSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRIL 1297 (1622)
T ss_pred             CCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEE
Confidence            46899999999999643 34799999999999999999999999999999999999999999984

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=1.1e-39  Score=387.57  Aligned_cols=327  Identities=18%  Similarity=0.244  Sum_probs=239.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 010471          179 LLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQ  258 (510)
Q Consensus       179 ~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~  258 (510)
                      ++.++..++.+++.++....+.+...++|.+++++++++|++||+++++|++++|+++|++.+++.+...+..++..++.
T Consensus       958 ~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~ 1037 (1495)
T PLN03232        958 LLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQ 1037 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            44455566778888888889999999999999999999999999999999999999999999999999988888888888


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHH
Q 010471          259 GAGAFINLLTLSWPLTLSALLICSFLS-IIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYK  337 (510)
Q Consensus       259 ~i~~li~l~~~s~~l~li~li~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~  337 (510)
                      +++.+++++.+++...++ ++.++++. +...++.+..++..+...+..+...+.+.|+++|++|||+|+.++++.++++
T Consensus      1038 ~i~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~ 1116 (1495)
T PLN03232       1038 LLSTFALIGTVSTISLWA-IMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKING 1116 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHH
Confidence            888888888777643333 33332222 2233344445556666677778889999999999999999999887666665


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCccC-----HhHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          338 IWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIM-IGQVS-----PEQLTKYVLYCEWLIYATWRMVDNL  411 (510)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~-~g~is-----~G~l~af~~~~~~~~~~~~~l~~~~  411 (510)
                      +..+...+...... ....|  ....+.....+++++.+...+. .|.+.     .+.+..++.|...+..++..+...+
T Consensus      1117 ~~~~~~~~~~~~~~-~~~~w--l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~ 1193 (1495)
T PLN03232       1117 KSMDNNIRFTLANT-SSNRW--LTIRLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQA 1193 (1495)
T ss_pred             HHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55444433222211 11111  1111112222333333444444 24321     2233345667777888888999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCC-CCCccC--CCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCC
Q 010471          412 SSLLQSIGATEKVFQLIDLLPSNQFL-SEGVKL--QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSG  488 (510)
Q Consensus       412 ~~~~~~~~a~~rl~eil~~~~e~~~~-~~~~~~--~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SG  488 (510)
                      .++..+..+.||+.|+++.++|++.. ++...+  .+..|+|+|+||+|+|+++ .++||+|+||+|+|||+|||||+||
T Consensus      1194 ~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SG 1272 (1495)
T PLN03232       1194 SKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTG 1272 (1495)
T ss_pred             HHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCC
Confidence            99999999999999999887764321 111111  2345789999999999643 3579999999999999999999999


Q ss_pred             CcHHHHHHHHhcccCCCCceeC
Q 010471          489 SGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       489 SGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ||||||+++|+|+|+|++|+|+
T Consensus      1273 SGKSTL~~lL~rl~~p~~G~I~ 1294 (1495)
T PLN03232       1273 AGKSSMLNALFRIVELEKGRIM 1294 (1495)
T ss_pred             CCHHHHHHHHhCCCcCCCceEE
Confidence            9999999999999999999984

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.5e-42  Score=343.19  Aligned_cols=368  Identities=18%  Similarity=0.264  Sum_probs=276.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhhchhhhHHHHHHHHHHH-HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          138 VASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLV-LLCV------TSGIFSGLRSGCFSIANIVLVKRLRETL  210 (510)
Q Consensus       138 ~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~-~l~~------~~~~~~~i~~~~~~~~~~~i~~~lr~~l  210 (510)
                      +++.++.-+.....|.+....++.....+  .+.....+.. ++-+      .++++.-+|..+...+.+--..++-.++
T Consensus       221 l~ll~i~rli~~~~pi~~k~iv~~ltap~--~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~l  298 (790)
T KOG0056|consen  221 LFLLIIGRLINVSLPILSKWIVDELTAPD--TFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETEL  298 (790)
T ss_pred             HHHHHHHHHHhhhhHHhHHHHHHhhcCcc--hhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHH
Confidence            33444444555667877666665432111  1111111111 1111      1233344444443345555567788899


Q ss_pred             HHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHH
Q 010471          211 YSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFIN-LLTLSWPLTLSALLICSFLSIIVS  289 (510)
Q Consensus       211 ~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~-l~~~s~~l~li~li~~~l~~~~~~  289 (510)
                      |+|+.++++.++-++++||++.-+++..+.+. ++.....++...++-..+.+++ ...+||+.++++++...++..+..
T Consensus       299 frHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti  377 (790)
T KOG0056|consen  299 FRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTI  377 (790)
T ss_pred             HHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheee
Confidence            99999999999999999999988887766666 5444444454444444444444 456899999999988887776655


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          290 VYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQ  369 (510)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  369 (510)
                      ..-..+.+.++++.....+......|++-+.+|||.||+|++|.++|++...++.+...|........+...+.+..++.
T Consensus       378 ~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgl  457 (790)
T KOG0056|consen  378 KITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGL  457 (790)
T ss_pred             eeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            55555666666666555566667789999999999999999999999999999988877776555555666666666666


Q ss_pred             HHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccCCCcccc
Q 010471          370 VMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGH  449 (510)
Q Consensus       370 v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~~~~~~~~  449 (510)
                      ++...+.++.|..+.+++|+.+.|..|..++..|+...+..+..++.+...+|+++|++++++|..+.++..+.....|.
T Consensus       458 l~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~  537 (790)
T KOG0056|consen  458 LAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGK  537 (790)
T ss_pred             hhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCe
Confidence            66667777888899999999999999999999999999999999999999999999999999887654333333445799


Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+|+||+|+|+  |++|||+||||+++|||++|+|||||+||||+++||.||||.++|.|+
T Consensus       538 i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~  596 (790)
T KOG0056|consen  538 IEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSIT  596 (790)
T ss_pred             EEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEE
Confidence            99999999997  457999999999999999999999999999999999999999999984

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.1e-38  Score=362.84  Aligned_cols=328  Identities=20%  Similarity=0.302  Sum_probs=273.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 010471          179 LLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQ  258 (510)
Q Consensus       179 ~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~  258 (510)
                      ++.++..++..++...+...+.+....|..++++++++.|++|||+.++|+|+||.++|++.+++.+...+..++.+++.
T Consensus       866 ~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~  945 (1381)
T KOG0054|consen  866 LLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLN  945 (1381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHH
Confidence            44555666777899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHH
Q 010471          259 GAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKI  338 (510)
Q Consensus       259 ~i~~li~l~~~s~~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~  338 (510)
                      +++.++++....|...++++...+++..+..+|.+..++..|......+..-+++.|+++|+.|||+|+.|+++.+++.+
T Consensus       946 ~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~ 1025 (1381)
T KOG0054|consen  946 VLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDE 1025 (1381)
T ss_pred             HHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHH
Confidence            99999999999999999888888888888888888888888888888899999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          339 WLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMI--GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQ  416 (510)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~--g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~  416 (510)
                      ..+...+...-....+-+...-..+   ++.++++..+...++.  +.+++|.+...+.|+.++...+.+++....++..
T Consensus      1026 ~~D~~~~~~f~~~~a~RWla~Rle~---ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn 1102 (1381)
T KOG0054|consen 1026 LIDENSRAFFLSISANRWLAVRLEL---LGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELEN 1102 (1381)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888766554432222111111222   2233333333333332  2277899988899999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCC-CCC--CccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHH
Q 010471          417 SIGATEKVFQLIDLLPSNQF-LSE--GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKST  493 (510)
Q Consensus       417 ~~~a~~rl~eil~~~~e~~~-~~~--~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKST  493 (510)
                      .++|.||+.|+.+.++|.+. .++  +++..|.+|+|+|+|++.+|..+ .++|||||||+|+|||||||||++||||||
T Consensus      1103 ~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSS 1181 (1381)
T KOG0054|consen 1103 NMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSS 1181 (1381)
T ss_pred             cchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHH
Confidence            99999999999997766221 111  22334678999999999999643 367999999999999999999999999999


Q ss_pred             HHHHHhcccCCCCceeC
Q 010471          494 FVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       494 L~kLL~g~y~p~sG~I~  510 (510)
                      |++.|.|+.+|.+|+|.
T Consensus      1182 L~~aLFRl~e~~~G~I~ 1198 (1381)
T KOG0054|consen 1182 LILALFRLVEPAEGEIL 1198 (1381)
T ss_pred             HHHHHHHhcCccCCeEE
Confidence            99999999999999984

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=1.6e-37  Score=368.66  Aligned_cols=320  Identities=16%  Similarity=0.199  Sum_probs=248.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          184 SGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAF  263 (510)
Q Consensus       184 ~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~l  263 (510)
                      ..++.+++.+++.....+...++|.++++++++.|++||++.++|++++|+++|++.+++.+...+..++..++.+++.+
T Consensus       938 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l 1017 (1490)
T TIGR01271       938 VLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAI 1017 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556778888888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHH
Q 010471          264 INLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKL  343 (510)
Q Consensus       264 i~l~~~s~~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~  343 (510)
                      +++++++|.++++++..+++++++..++.+..++..+...+..+...+.+.|+++|+.|||+|+.++++.+++.+..++.
T Consensus      1018 ~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~ 1097 (1490)
T TIGR01271      1018 FVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLH 1097 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            99999999887765555454555555666666777777777788899999999999999999999999999999988865


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          344 AFIRIRESMAYGLWNMSFITLYRSTQV--MAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGAT  421 (510)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~l~~~~~v--~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~  421 (510)
                      .+..........+......++..+..+  ++++++     ...++.|.+..++.|...+..++..+...+..+...+.+.
T Consensus      1098 ~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~-----~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~ 1172 (1490)
T TIGR01271      1098 TANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIG-----TNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSV 1172 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            443333222222211222222111111  111222     2234556666666777778888888888899999999999


Q ss_pred             HHHHHhhcCCCCCCCCCCC---------------cc--CCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEE
Q 010471          422 EKVFQLIDLLPSNQFLSEG---------------VK--LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIV  484 (510)
Q Consensus       422 ~rl~eil~~~~e~~~~~~~---------------~~--~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIV  484 (510)
                      +|+.++++.++|+....+.               ..  ..+..|+|+|+||+|+|+++ .++||+|+||+|+|||+||||
T Consensus      1173 eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIv 1251 (1490)
T TIGR01271      1173 SRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLL 1251 (1490)
T ss_pred             HHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEE
Confidence            9999999877664311110               00  11345889999999999853 467999999999999999999


Q ss_pred             cCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          485 GLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       485 G~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+||||||||+++|+|+|+ ++|+|+
T Consensus      1252 GrSGsGKSTLl~lL~rl~~-~~G~I~ 1276 (1490)
T TIGR01271      1252 GRTGSGKSTLLSALLRLLS-TEGEIQ 1276 (1490)
T ss_pred             CCCCCCHHHHHHHHhhhcC-CCcEEE
Confidence            9999999999999999998 799984

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=1.1e-36  Score=361.98  Aligned_cols=373  Identities=15%  Similarity=0.111  Sum_probs=266.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHH
Q 010471          127 IGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLR-SG--CFSIANIVLV  203 (510)
Q Consensus       127 ~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~-~~--~~~~~~~~i~  203 (510)
                      ++-+++.++.+.++.++..++....|+++...+.....++.. ... ..+..++.+...+..... .+  .....+.++.
T Consensus       296 ~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir  373 (1495)
T PLN03232        296 NNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDPA-WVG-YVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLR  373 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-chH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566677777778888888888898887776433222211 101 111111111111111111 11  1245666777


Q ss_pred             HHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 010471          204 KRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSF  283 (510)
Q Consensus       204 ~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~l  283 (510)
                      ..++..+|+|+++++..++++.++|++++++++|++++++.. ..+..+....+.++++++++   .+.+++.++++.++
T Consensus       374 ~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l---~~~lg~~~l~~~~v  449 (1495)
T PLN03232        374 STLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLL---YQQLGVASLFGSLI  449 (1495)
T ss_pred             HHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHH
Confidence            888889999999999999999999999999999999999975 44555554444444433332   23344444433332


Q ss_pred             HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          284 LS---IIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMS  360 (510)
Q Consensus       284 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (510)
                      ++   .+..++.++.++..++.++..++..+.+.|.++|+++||.|+.|+.+.+++++..++..+...+.....+.....
T Consensus       450 ~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~  529 (1495)
T PLN03232        450 LFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFI  529 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22   234455677777778888888889999999999999999999999999999988777766665554333322222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 010471          361 FITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEG  440 (510)
Q Consensus       361 ~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~  440 (510)
                      ....  ...+.++++|++.+.+|.+++|.+++++.+...+..|+..+...+..+.++..+.+|+.++++.+++.... +.
T Consensus       530 ~~~~--~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~-~~  606 (1495)
T PLN03232        530 LNSI--PVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQ-NP  606 (1495)
T ss_pred             HHHH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc-cC
Confidence            1111  11233467889999999999999999999999999999999999999999999999999999876542211 11


Q ss_pred             ccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          441 VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       441 ~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      . .....+.|+|+||+|+|++++++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|.+
T Consensus       607 ~-~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i  674 (1495)
T PLN03232        607 P-LQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS  674 (1495)
T ss_pred             C-cCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCE
Confidence            1 1112357999999999986545689999999999999999999999999999999999999999865

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=3.9e-36  Score=357.75  Aligned_cols=374  Identities=14%  Similarity=0.127  Sum_probs=263.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHH
Q 010471          127 IGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFS-GLRSGC--FSIANIVLV  203 (510)
Q Consensus       127 ~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~i~~~~--~~~~~~~i~  203 (510)
                      ++.+++.++.++++.++..++..+.|+++...+......+.. ..... +..++.+...+.. ....+.  ...++.++.
T Consensus       296 ~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir  373 (1622)
T PLN03130        296 NNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPA-WIGYI-YAFSIFVGVVLGVLCEAQYFQNVMRVGFRLR  373 (1622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666777777888888888888998887766432222211 11111 1111111111101 111111  235667778


Q ss_pred             HHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--
Q 010471          204 KRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLIC--  281 (510)
Q Consensus       204 ~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~--  281 (510)
                      ..++..+|+|+++++...+++.++|++++++++|++++++... .+..++...+.++++++++..   .+++.+++++  
T Consensus       374 ~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~---~lg~~~l~g~~v  449 (1622)
T PLN03130        374 STLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQ---QLGVASLIGSLM  449 (1622)
T ss_pred             HHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence            8888899999999999999999999999999999999999864 455555555555544444332   2333332222  


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          282 -SFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMS  360 (510)
Q Consensus       282 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (510)
                       .+++.+..++.++.++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++++..++..+...+.....+....+
T Consensus       450 ~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~  529 (1622)
T PLN03130        450 LVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFI  529 (1622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2223334455566677777777788888999999999999999999999999998887766555444443222222221


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 010471          361 FITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEG  440 (510)
Q Consensus       361 ~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~  440 (510)
                      ....  ...+.++++|++.+..|.+++|.+++++.+...+..|+..+...+..+.++..+.+|+.++++.+++.... +.
T Consensus       530 ~~~~--~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~-~~  606 (1622)
T PLN03130        530 LNSI--PVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLP-NP  606 (1622)
T ss_pred             HHHH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc-CC
Confidence            1111  11345567888999999999999999999999999999999999999999999999999999865432211 11


Q ss_pred             ccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC-ceeC
Q 010471          441 VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-GQVC  510 (510)
Q Consensus       441 ~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s-G~I~  510 (510)
                      . .....+.|+|+||+|+|++++++++|+|+||+|++||++||||+||||||||+++|+|+|+|++ |+|.
T Consensus       607 ~-~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~  676 (1622)
T PLN03130        607 P-LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV  676 (1622)
T ss_pred             c-ccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEE
Confidence            1 1112357999999999986544679999999999999999999999999999999999999999 8873

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-37  Score=310.14  Aligned_cols=318  Identities=23%  Similarity=0.322  Sum_probs=273.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 010471          191 RSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFIN-LLTL  269 (510)
Q Consensus       191 ~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~-l~~~  269 (510)
                      ++.++..+++.....+-.+.|.|++++++.|+.++++|.+...+......|+..+...+..++..++-+....++ ...+
T Consensus         2 r~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~   81 (497)
T COG5265           2 RDRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY   81 (497)
T ss_pred             chHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence            345667777888888999999999999999999999999988888878788887777776666666655554444 4578


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q 010471          270 SWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIR  349 (510)
Q Consensus       270 s~~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~  349 (510)
                      +|+.+++++++..++.++......++....+...+..++++....|++-+.+|||.|++|++|.++|++.++.+.+...+
T Consensus        82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k  161 (497)
T COG5265          82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK  161 (497)
T ss_pred             ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence            99999999999888877766555666677777888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010471          350 ESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLID  429 (510)
Q Consensus       350 ~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~  429 (510)
                      .....+..+.....+.......+...++..+..|++|.|+++....+..++..|+..++....++.++...+|+++++++
T Consensus       162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~  241 (497)
T COG5265         162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD  241 (497)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence            87777777777777777777788888999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCccCC-CccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCce
Q 010471          430 LLPSNQFLSEGVKLQ-RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ  508 (510)
Q Consensus       430 ~~~e~~~~~~~~~~~-~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~  508 (510)
                      .+.+..+.++..... ...|.|.|+||+|.|..+  +++|+|+||++|+|+++|+||+||+||||+++||.||||+++|.
T Consensus       242 ~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~--r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~  319 (497)
T COG5265         242 VEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPR--RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS  319 (497)
T ss_pred             cchhhccCCCCccccccccceEEEEEEEeecccc--chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCce
Confidence            888765433322222 345789999999999754  78999999999999999999999999999999999999999999


Q ss_pred             eC
Q 010471          509 VC  510 (510)
Q Consensus       509 I~  510 (510)
                      |.
T Consensus       320 I~  321 (497)
T COG5265         320 IT  321 (497)
T ss_pred             EE
Confidence            84

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=1.1e-33  Score=337.00  Aligned_cols=378  Identities=15%  Similarity=0.141  Sum_probs=265.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          126 LIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHK--SSRFLVLLCVTSGIFSGLRSGCFSIANIVLV  203 (510)
Q Consensus       126 ~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~~~~~--~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~  203 (510)
                      .++-+++.++.++++.++..++....|+++...++.....+......  ....+.++.++.+++.....+.....+.++.
T Consensus       311 l~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir  390 (1522)
T TIGR00957       311 LYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIK  390 (1522)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456777777788888888888889998887774322111111100  0111111222223332222333456778888


Q ss_pred             HHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHH
Q 010471          204 KRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWP-LTLSALLICS  282 (510)
Q Consensus       204 ~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~-l~li~li~~~  282 (510)
                      ..++..+|+|+++++..++++.++|++++++++|++++.+.. ..+..+....+.++++++ +++..+. .+++.+++++
T Consensus       391 ~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~-ll~~~~g~~~l~~l~~~~  468 (1522)
T TIGR00957       391 TAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALY-FLWLNLGPSVLAGVAVMV  468 (1522)
T ss_pred             HHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999854 345555555554444443 4444443 2333334444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          283 FLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFI  362 (510)
Q Consensus       283 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (510)
                      +++.+...+.++.++..++.++..++..+.+.|.++|+++||.++.|+.+.+++++..++..+...+.......    ..
T Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~----~~  544 (1522)
T TIGR00957       469 LMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAV----GT  544 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence            44555556667777778788888889999999999999999999999999999988777766554444322222    22


Q ss_pred             HHHHHHH--HHHHHHHHHHHhc--CccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 010471          363 TLYRSTQ--VMAVLLGGMSIMI--GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS  438 (510)
Q Consensus       363 ~l~~~~~--v~~l~~g~~lv~~--g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~  438 (510)
                      ++.....  +.++.++++.+..  +.++.+..++.+.+...+..|+..+...+..+.++..+.+|+.++++.++++....
T Consensus       545 ~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~  624 (1522)
T TIGR00957       545 FTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSI  624 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc
Confidence            2222111  2223345566653  56888988888888888899999999999999999999999999998765422111


Q ss_pred             CCccCC-CccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          439 EGVKLQ-RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       439 ~~~~~~-~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      +..... ...+.|+++|++|+|+++ ++++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.
T Consensus       625 ~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~  696 (1522)
T TIGR00957       625 ERRTIKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVH  696 (1522)
T ss_pred             cccccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEE
Confidence            111111 112479999999999753 35799999999999999999999999999999999999999999983

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=100.00  E-value=1.5e-34  Score=294.10  Aligned_cols=375  Identities=17%  Similarity=0.196  Sum_probs=308.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh---chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          126 LIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSA---QREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVL  202 (510)
Q Consensus       126 ~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~---~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i  202 (510)
                      .+...+..++.+.+++.+.-++.+..|.|+..+-|-.   .+.+ .+. ....+.+.++++.+++..+|...+...+.++
T Consensus        17 ~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~-TLv-~Ltvlal~ly~~~glLd~iR~~~l~Rig~~l   94 (580)
T COG4618          17 VLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVP-TLV-MLTVLALGLYAFQGLLDAIRSRVLVRIGERL   94 (580)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcc-hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666777778888888888888898876554321   1111 111 1222334556778888999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010471          203 VKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICS  282 (510)
Q Consensus       203 ~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~  282 (510)
                      ...+...+|....+.+..   .+..|+=.+-+. |.++++.+++..-...+-..=-.-+++.+.+.++|++.+++++++.
T Consensus        95 D~~L~~~v~~a~~~~~l~---~~~~g~~~Q~Lr-DL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~  170 (580)
T COG4618          95 DRQLNGPVFAASFSAPLL---RRGSGDGLQPLR-DLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAI  170 (580)
T ss_pred             HHHhccHHHHHHHhhHHh---hcCCCccccchh-hHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998866654   345566556665 9999999877633332222222456778888999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          283 FLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFI  362 (510)
Q Consensus       283 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (510)
                      +++....+-.+..++..++..+...+.+..+..+..+.++|++-|+.+...++|.+....+.+.+.+.+-..+.+...+.
T Consensus       171 iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr  250 (580)
T COG4618         171 ILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSR  250 (580)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            88877777777777777777888888899999999999999999999999999999999999988888777888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcc
Q 010471          363 TLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVK  442 (510)
Q Consensus       363 ~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~  442 (510)
                      .+-.+.+..++.+|+|+|++|++|.|.+++-..+......|+...+..|.++..++.|.+|+.+.++..|+..   +...
T Consensus       251 ~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~---~~m~  327 (580)
T COG4618         251 ALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAA---ERMP  327 (580)
T ss_pred             HHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc---CCCC
Confidence            8889999999999999999999999999999999999999999999999999999999999999999877643   2233


Q ss_pred             CCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          443 LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       443 ~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .+..++.+.+|+|++.=|+. ++++|+|+||++++||.+|||||||||||||+|+|.|-|+|.+|.|+
T Consensus       328 LP~P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VR  394 (580)
T COG4618         328 LPAPQGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVR  394 (580)
T ss_pred             CCCCCceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEE
Confidence            34456899999999988876 47999999999999999999999999999999999999999999985

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.2e-33  Score=275.02  Aligned_cols=374  Identities=17%  Similarity=0.130  Sum_probs=257.9

Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          124 WNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLV  203 (510)
Q Consensus       124 ~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~  203 (510)
                      +-..|++++.++....++..+++.++..-.++...............    .....++.+..+.+.+.+.....+++.+.
T Consensus         5 l~llr~nr~~~i~~~a~s~a~g~~g~~lLa~in~al~e~~~~~~~~l----~~f~~llllf~~ss~is~lg~t~~gq~~I   80 (546)
T COG4615           5 LLLLRQNRWPFISVMALSLASGALGIGLLAFINQALIETADTSLLVL----PEFLGLLLLFMVSSLISQLGLTTLGQHFI   80 (546)
T ss_pred             HHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44568899999988888888887776544344333212111110111    11222333334455666777788999999


Q ss_pred             HHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 010471          204 KRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSF  283 (510)
Q Consensus       204 ~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~l  283 (510)
                      .++|+++.++++..|+..+++.+++.++.++++|+..|+ +-...++.+....+..+++.+++.++||++.+++++.+.+
T Consensus        81 ~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv  159 (546)
T COG4615          81 YKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNIS-FAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVV  159 (546)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHhcccchhhhhccccccee-ehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999 5556677788888889999999999999999999888777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          284 LSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEK--ELGRYKIWLEKLAFIRIRESMAYGLWNMSF  361 (510)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (510)
                      ..+.-.+...+.-+..+...+...++++.....++|.++++......+  ..++|....+.+++...+..........+.
T Consensus       160 ~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~  239 (546)
T COG4615         160 TIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWS  239 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhhhhhhhHHHHHHHHHH
Confidence            666555555555555556667778888888889999999987654332  234444444443331111111110111111


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc-CccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 010471          362 ITLYRSTQVMAVLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEG  440 (510)
Q Consensus       362 ~~l~~~~~v~~l~~g~~lv~~-g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~  440 (510)
                      +.+........+|    +... +--+......+++....+..|+.+....++.+.++..|.+|+.++-..++......+ 
T Consensus       240 ni~l~~lIGlvf~----lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~~-  314 (546)
T COG4615         240 NIMLLGLIGLVFW----LALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPRP-  314 (546)
T ss_pred             HHHHHHHHHHHHH----HHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCCC-
Confidence            1111111111112    2222 112222333455556667789999999999999999999999998764443332222 


Q ss_pred             ccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          441 VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       441 ~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                       ++.+.-..|+++||.|+|+..  ..=+..||++|++||.|-|||.+||||||+++||.|+|+|++|+|+
T Consensus       315 -q~~p~~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~  381 (546)
T COG4615         315 -QAFPDWKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEIL  381 (546)
T ss_pred             -CcCCcccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCcee
Confidence             222234579999999999843  3678999999999999999999999999999999999999999995

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=2.1e-31  Score=316.61  Aligned_cols=374  Identities=15%  Similarity=0.150  Sum_probs=266.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhh-hHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          128 GRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREE-AMVFHK--SSRFLVLLCVTSGIFSGLRSGCFSIANIVLVK  204 (510)
Q Consensus       128 ~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~-~~~~~~--~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~~  204 (510)
                      +.++|.++...+..++..++.+..|+++...+......+ ......  ....+.+..++..++.....+.....+.++..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~  155 (1490)
T TIGR01271        76 RCFFWRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRI  155 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666666666667777788889988877663321111 100000  11111122223333333444555566677777


Q ss_pred             HHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 010471          205 RLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFL  284 (510)
Q Consensus       205 ~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~l~  284 (510)
                      .++..+|+|+++++...+++..+|++++++++|++++.+.+... ..+....+.++++++++..+..+.+++.+++++++
T Consensus       156 ~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~  234 (1490)
T TIGR01271       156 ALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILL  234 (1490)
T ss_pred             HHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78888899999999999999999999999999999999976543 44445555566666666666666677766667777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          285 SIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITL  364 (510)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  364 (510)
                      ..+...+.++..+..++.++...+..+.+.|.++|+++||.++.|+.+.+++++..++-.+...+........... ...
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~-~~~  313 (1490)
T TIGR01271       235 ALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSA-FFF  313 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            7777777788888888888888899999999999999999999999999888887766555555443322222221 111


Q ss_pred             HHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccC
Q 010471          365 YRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATW-RMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKL  443 (510)
Q Consensus       365 ~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~~  443 (510)
                      . ...+.++.++++.+..+ ++++.+++++.+...+..|+. .+...+..+.++.++++|+.++++.++.+..  + .. 
T Consensus       314 ~-~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~--~-~~-  387 (1490)
T TIGR01271       314 S-GFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTL--E-YN-  387 (1490)
T ss_pred             H-HHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc--c-cc-
Confidence            1 22334455666666654 678888888888888877764 6788888999999999999999986543221  1 01 


Q ss_pred             CCccccEEEEeeeEECCCCC-------------------------------CCCccccceEEeeCCCEEEEEcCCCCcHH
Q 010471          444 QRLMGHVQFVNISFHYPSRP-------------------------------TVPILNHVCLTIEANEVVAIVGLSGSGKS  492 (510)
Q Consensus       444 ~~~~~~I~f~nVsF~Y~~~~-------------------------------~~~vL~nisltI~~Ge~vAIVG~SGSGKS  492 (510)
                       .....|+++|++|+|++..                               .+++|+|+||+|++||.++|+||+|||||
T Consensus       388 -~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKS  466 (1490)
T TIGR01271       388 -LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKS  466 (1490)
T ss_pred             -CCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHH
Confidence             1124699999999996310                               13589999999999999999999999999


Q ss_pred             HHHHHHhcccCCCCceeC
Q 010471          493 TFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       493 TL~kLL~g~y~p~sG~I~  510 (510)
                      ||+++|+|+++|++|+|.
T Consensus       467 TLl~~l~G~~~~~~G~i~  484 (1490)
T TIGR01271       467 SLLMMIMGELEPSEGKIK  484 (1490)
T ss_pred             HHHHHHhCCCCCCCceEE
Confidence            999999999999999984

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=1.4e-30  Score=309.96  Aligned_cols=381  Identities=13%  Similarity=0.105  Sum_probs=274.6

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          125 NLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRF---LVLLCVTSGIFSGLRSGCFSIANIV  201 (510)
Q Consensus       125 ~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~---l~~l~~~~~~~~~i~~~~~~~~~~~  201 (510)
                      ...+.+++.++..+++.++..++.++.|+++...+......+.. ......+   +++..++.+++.....+.....+.+
T Consensus       237 ~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~-~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~  315 (1560)
T PTZ00243        237 TLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNAT-WGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQ  315 (1560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677777788888999999999999877666332111211 1111111   1122223333344444555667777


Q ss_pred             HHHHHHHHHHHHHhcCCccccc--ccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 010471          202 LVKRLRETLYSALLFQDVYFFD--TEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALL  279 (510)
Q Consensus       202 i~~~lr~~l~~~ll~lp~~ff~--~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li  279 (510)
                      +...++..+|+|.++++...+.  +.++|++++.+++|++++.+++.. +..+....+.++++++++..+-.+.+++.++
T Consensus       316 ~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~-~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~  394 (1560)
T PTZ00243        316 YRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQY-CMYLWSSPMVLLLSILLLSRLVGWCALMAVA  394 (1560)
T ss_pred             HHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            8888999999999999988776  568899999999999999998744 5556666777777777776666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          280 ICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNM  359 (510)
Q Consensus       280 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (510)
                      +++++..+...+.++..+..++..+...+..+...|.++|+++||.++.|+.+.+++++..++-.+...+..........
T Consensus       395 vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~  474 (1560)
T PTZ00243        395 VLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSF  474 (1560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666677777777777788888889999999999999999999999999988776655554444333332222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC----
Q 010471          360 SFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ----  435 (510)
Q Consensus       360 ~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~----  435 (510)
                      +......  .+.++.++++.+..|.++++.+++.+.+...+..|+..+...+..+.++.++++|+.++++.++...    
T Consensus       475 ~~~~~p~--l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~  552 (1560)
T PTZ00243        475 VNNATPT--LMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQ  552 (1560)
T ss_pred             HHHHHHH--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccc
Confidence            2222221  1223356678888999999999999999999999999999999999999999999999997654100    


Q ss_pred             CC-C---------C--C---------------cc---------------------------CCCccccEEEEeeeEECCC
Q 010471          436 FL-S---------E--G---------------VK---------------------------LQRLMGHVQFVNISFHYPS  461 (510)
Q Consensus       436 ~~-~---------~--~---------------~~---------------------------~~~~~~~I~f~nVsF~Y~~  461 (510)
                      +. +         .  .               ..                           .....+.+.++|++|++|.
T Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  632 (1560)
T PTZ00243        553 DMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPS  632 (1560)
T ss_pred             cchhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccccccccccc
Confidence            00 0         0  0               00                           0001135788888887642


Q ss_pred             C-------------------------------------CCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471          462 R-------------------------------------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP  504 (510)
Q Consensus       462 ~-------------------------------------~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p  504 (510)
                      .                                     +++++|+|+||+|++||+++|+|+||||||||+++|+|+++|
T Consensus       633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~  712 (1560)
T PTZ00243        633 SASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEI  712 (1560)
T ss_pred             ccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            0                                     124589999999999999999999999999999999999999


Q ss_pred             CCcee
Q 010471          505 SDGQV  509 (510)
Q Consensus       505 ~sG~I  509 (510)
                      ++|+|
T Consensus       713 ~~G~i  717 (1560)
T PTZ00243        713 SEGRV  717 (1560)
T ss_pred             CCcEE
Confidence            99997

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.97  E-value=9.1e-27  Score=265.81  Aligned_cols=377  Identities=17%  Similarity=0.135  Sum_probs=248.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHH
Q 010471          129 RDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGL-RS--GCFSIANIVLVKR  205 (510)
Q Consensus       129 ~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i-~~--~~~~~~~~~i~~~  205 (510)
                      -++|.++...++..+......+.|.++...+....+...... ....+.+++.+...+-..+ +.  ....+.+.++...
T Consensus       198 ~f~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~-~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~a  276 (1381)
T KOG0054|consen  198 TFGRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLN-NGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSA  276 (1381)
T ss_pred             HHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccc-hhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHH
Confidence            355555555555555555566789888877744322211111 1111111111111111111 11  1223455555666


Q ss_pred             HHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 010471          206 LRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLS  285 (510)
Q Consensus       206 lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~l~~  285 (510)
                      +-..+|+|.+++.-.--....+|++++-++.|++++.+... .+..+....+.+++++.++...=-.-+++.++...+++
T Consensus       277 l~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~-~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~  355 (1381)
T KOG0054|consen  277 LISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAAC-FLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLI  355 (1381)
T ss_pred             HHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence            66788999999998888888999999999999999999643 34445555555554444443221112222233333344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          286 IIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLY  365 (510)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  365 (510)
                      .+.....++.++.+++..+...+.-+...|.++||++||.|+-|+.+.++.++.-++-.+.-.+.....+..........
T Consensus       356 p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p  435 (1381)
T KOG0054|consen  356 PLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSP  435 (1381)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556667777777777788888888999999999999999999998888887666554444443322222222211111


Q ss_pred             HHHHHHHHHHHHHH-HhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccCC
Q 010471          366 RSTQVMAVLLGGMS-IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQ  444 (510)
Q Consensus       366 ~~~~v~~l~~g~~l-v~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~~~  444 (510)
                        ..+.++.++++. ...+.++....++.+.+...+..|+..+......+.++.++.+|+.+++..++.+..........
T Consensus       436 --~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~  513 (1381)
T KOG0054|consen  436 --VLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDE  513 (1381)
T ss_pred             --HHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCC
Confidence              122233444444 44567788777788888888899999998899999999999999999998755432211111222


Q ss_pred             CccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          445 RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       445 ~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      ..+..|+++|.+|++++.+..+.|+||||+||+||.+||||+.|||||+|+..|+|-.+..+|++
T Consensus       514 ~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v  578 (1381)
T KOG0054|consen  514 AGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSV  578 (1381)
T ss_pred             CCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceE
Confidence            33457999999999986434569999999999999999999999999999999999999999986

>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.96  E-value=1.6e-25  Score=218.57  Aligned_cols=270  Identities=23%  Similarity=0.290  Sum_probs=224.3

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhhchhhhH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          135 LVAVASLIVAAVSEITMPRILAEAVFSAQREEAM-VFHKSSRF--LVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLY  211 (510)
Q Consensus       135 ~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~-~~~~~~~~--l~~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~  211 (510)
                      +.++++.++.++.....|.++...++....++.. ........  +.+..++.........+.......++..++|.+++
T Consensus         2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   81 (275)
T PF00664_consen    2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF   81 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777888888888898888777543222111 11111111  11122223333444444556788899999999999


Q ss_pred             HHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010471          212 SALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVY  291 (510)
Q Consensus       212 ~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~l~~~~~~~~  291 (510)
                      +|++++|.++|+++++||+++|+++|++++++.+...+..++..+...++.+++++.+||++++++++..|+..++...+
T Consensus        82 ~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~  161 (275)
T PF00664_consen   82 EKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFIF  161 (275)
T ss_dssp             HHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          292 GQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVM  371 (510)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~  371 (510)
                      .++.++..++.++..++.++.+.|.++|+++||+||.|+++.+++++..++..+...+.....+........+..+..++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (275)
T PF00664_consen  162 SKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIVL  241 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999888877777778888888887888


Q ss_pred             HHHHHHHH-HhcCccCHhHHHHHHHHHHHHHHHH
Q 010471          372 AVLLGGMS-IMIGQVSPEQLTKYVLYCEWLIYAT  404 (510)
Q Consensus       372 ~l~~g~~l-v~~g~is~G~l~af~~~~~~~~~~~  404 (510)
                      ++++|+++ +.+|++++|++++++.+..++..|+
T Consensus       242 ~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl  275 (275)
T PF00664_consen  242 ILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL  275 (275)
T ss_dssp             HHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence            99999999 9999999999999999988887764

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.94  E-value=3.2e-23  Score=219.94  Aligned_cols=340  Identities=13%  Similarity=0.126  Sum_probs=243.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCch------hHHHHHHhhHH
Q 010471          166 EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVG------GLTSRLTADCQ  239 (510)
Q Consensus       166 ~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G------~lisrl~~D~~  239 (510)
                      |...|........+++.+..+....+.++...+..+.-.-+-..+.++.+... .||.-...|      ..=+|+..|+.
T Consensus        81 d~~~f~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~y~l~~~~~~~~~dNpDQRi~eDi~  159 (604)
T COG4178          81 DLAAFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RYYRLAQAGGIGLIDNPDQRIQEDIR  159 (604)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHhcccccCCCChHHhHHHHHH
Confidence            33344433333334444444445555555555544555555566677777766 444444443      24489999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          240 RLSNVIGNDINMILRNSLQGAGAFINLLTL---------------SWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQE  304 (510)
Q Consensus       240 ~i~~~~~~~l~~l~~~~~~~i~~li~l~~~---------------s~~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~  304 (510)
                      ...+........++.++++++...+++.-+               ...+...+++-++...++...++|...++..+.+.
T Consensus       160 ~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~  239 (604)
T COG4178         160 NFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQK  239 (604)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHH
Confidence            988876666777777777777776666622               33344444444555555566778888888877777


Q ss_pred             HHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 010471          305 CNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQ  384 (510)
Q Consensus       305 ~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~  384 (510)
                      ..++....+...-++.+.|-.|+.|+.|.++.++.+++..+.-.+...+...+.++......+..++-..+++-....|+
T Consensus       240 ~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~  319 (604)
T COG4178         240 LEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQ  319 (604)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCc
Confidence            78888888888899999999999999999999988888776444443333333444444445555566667777788999


Q ss_pred             cCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC------CCCCCCCCccC---CCccccEEEEee
Q 010471          385 VSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP------SNQFLSEGVKL---QRLMGHVQFVNI  455 (510)
Q Consensus       385 is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~------e~~~~~~~~~~---~~~~~~I~f~nV  455 (510)
                      ++.|+++.......++...+.++...++.+..-.+...|+.++.+.-+      +.. ...+...   ...+..|+|+|+
T Consensus       320 i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~nl  398 (604)
T COG4178         320 ITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKP-ARTGRRIDFDDNADHGITLENL  398 (604)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCccccc-CcccccccccccccceeEEeee
Confidence            999999998888899999999999999999999999999999984322      111 1101000   111578999999


Q ss_pred             eEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          456 SFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       456 sF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      +-.-|++  +..++++|++|++||.+-|.|+||||||||++.|+|+||--+|+|
T Consensus       399 ~l~~p~~--~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I  450 (604)
T COG4178         399 SLRTPDG--QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRI  450 (604)
T ss_pred             eEECCCC--CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCce
Confidence            9999864  479999999999999999999999999999999999999999987

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.84  E-value=6.3e-18  Score=175.27  Aligned_cols=307  Identities=15%  Similarity=0.164  Sum_probs=178.8

Q ss_pred             HHHHHHHHHHHHHHhcCCcccccccCchhH----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 010471          201 VLVKRLRETLYSALLFQDVYFFDTEAVGGL----TSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLS  276 (510)
Q Consensus       201 ~i~~~lr~~l~~~ll~lp~~ff~~~~~G~l----isrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li  276 (510)
                      +.-.++-.-++++.++ ...||.-.+.++.    =+|+++|+++....++...+.+....+.++.+..-++....++..+
T Consensus       152 r~R~~ltk~lh~~Y~k-~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~  230 (659)
T KOG0060|consen  152 RFRKNLTKYLHRLYFK-GFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPV  230 (659)
T ss_pred             HHHHHHHHHHHHHHhc-cceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHH
Confidence            3334444444444443 2344443333332    3689999998887766555555544443333333333333333333


Q ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          277 ALLICSF-LSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG  355 (510)
Q Consensus       277 ~li~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (510)
                      .+..-.+ -.++.+.+.+-..++..+.++..++....-.+...+.+.|--|+.+..|....++.++++.+...+...+.-
T Consensus       231 ~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~  310 (659)
T KOG0060|consen  231 SIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRF  310 (659)
T ss_pred             HHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3322211 122333333333444445555556666666778889999999999999998888888887765554432221


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc----CccCHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010471          356 LWNMSFITLYRSTQVMAVLLGGMSIMI----GQVSPEQLTKYVLYCE----WLIYATWRMVDNLSSLLQSIGATEKVFQL  427 (510)
Q Consensus       356 ~~~~~~~~l~~~~~v~~l~~g~~lv~~----g~is~G~l~af~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~rl~ei  427 (510)
                      ....+.+++...+.++-..+.+..+..    ++++..++...+....    .++.++..+.....++.+-.+-..|+-|+
T Consensus       311 ~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el  390 (659)
T KOG0060|consen  311 WLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGEL  390 (659)
T ss_pred             HHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHH
Confidence            222333333333333333222222333    3667666655443332    22334444444445555555666777777


Q ss_pred             hcCCCCC-------------C-C------CCCC-ccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcC
Q 010471          428 IDLLPSN-------------Q-F------LSEG-VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGL  486 (510)
Q Consensus       428 l~~~~e~-------------~-~------~~~~-~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~  486 (510)
                      ++.-.+.             . +      ..++ .+..+.+..|+|++|+++=|++ +.-+.+|+||+|+.|+.+-|.||
T Consensus       391 ~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~  469 (659)
T KOG0060|consen  391 MEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGP  469 (659)
T ss_pred             HHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECC
Confidence            6421100             0 0      0011 1122345689999999999975 44577889999999999999999


Q ss_pred             CCCcHHHHHHHHhcccCCCCcee
Q 010471          487 SGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       487 SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      ||||||+|++.|.|+|+-.+|.|
T Consensus       470 sG~GKtSLlRvlggLWp~~~G~l  492 (659)
T KOG0060|consen  470 SGCGKTSLLRVLGGLWPSTGGKL  492 (659)
T ss_pred             CCCchhHHHHHHhcccccCCCeE
Confidence            99999999999999999999986

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.64  E-value=1.7e-16  Score=150.99  Aligned_cols=59  Identities=36%  Similarity=0.597  Sum_probs=55.6

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .+++++|+.+|++   ..||+|+||+|++||.|+||||||||||||+++++||.+|++|+|+
T Consensus         3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~   61 (248)
T COG1116           3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL   61 (248)
T ss_pred             eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence            5899999999974   5799999999999999999999999999999999999999999974

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.63  E-value=4.1e-16  Score=146.33  Aligned_cols=60  Identities=38%  Similarity=0.604  Sum_probs=56.8

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+-.||++  +.+|+||||+|++||.|||||+||||||||++.|.|+.+|++|+|.
T Consensus         3 ~i~~~nl~k~yp~~--~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~   62 (258)
T COG3638           3 MIEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL   62 (258)
T ss_pred             eEEEeeeeeecCCC--ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEE
Confidence            59999999999954  6899999999999999999999999999999999999999999983

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.62  E-value=4.6e-16  Score=150.68  Aligned_cols=59  Identities=37%  Similarity=0.660  Sum_probs=55.5

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .++.+|++|+|++   +++|+|+||+|++||.++|+||||||||||+|+|+|+.+|.+|+|+
T Consensus         2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~   60 (258)
T COG1120           2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL   60 (258)
T ss_pred             eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEE
Confidence            4789999999974   5799999999999999999999999999999999999999999984

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.61  E-value=8.3e-16  Score=148.17  Aligned_cols=60  Identities=33%  Similarity=0.706  Sum_probs=55.9

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ..|+++|++|+|.++   +||+||||+|++|+.+|||||+|||||||+|+++|+.+|.+|+|.
T Consensus         3 ~~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~   62 (254)
T COG1121           3 PMIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK   62 (254)
T ss_pred             cEEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEE
Confidence            369999999999643   599999999999999999999999999999999999999999984

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.60  E-value=4.7e-16  Score=141.08  Aligned_cols=59  Identities=34%  Similarity=0.564  Sum_probs=56.4

Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+|+||+-.|++.  .++|+||||+|++||.+-+||||||||||++|||+|--.|++|+|.
T Consensus         2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~   60 (223)
T COG2884           2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL   60 (223)
T ss_pred             eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEE
Confidence            8999999999975  6799999999999999999999999999999999999999999984

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.60  E-value=9.7e-16  Score=142.09  Aligned_cols=59  Identities=37%  Similarity=0.592  Sum_probs=55.5

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+-+|.+   ..||+|||++|++||+++|+||||||||||+++|.||-+|++|+|.
T Consensus         2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~   60 (240)
T COG1126           2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT   60 (240)
T ss_pred             eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEE
Confidence            4899999999963   4699999999999999999999999999999999999999999984

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.59  E-value=1.6e-15  Score=143.38  Aligned_cols=62  Identities=42%  Similarity=0.553  Sum_probs=55.9

Q ss_pred             cEEEEeeeEECCCCCC-CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~-~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .++++|+++.|+++.. ..+|+||||+|.+||+.||||+||||||||+++|+|+-+|++|+|+
T Consensus         3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~   65 (252)
T COG1124           3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSIL   65 (252)
T ss_pred             eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEE
Confidence            4889999999975420 1499999999999999999999999999999999999999999984

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.58  E-value=1.6e-15  Score=144.29  Aligned_cols=62  Identities=29%  Similarity=0.477  Sum_probs=56.6

Q ss_pred             cEEEEeeeEECCCC-CCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC---CCCceeC
Q 010471          449 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~-~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~---p~sG~I~  510 (510)
                      ...++||+|+|+.. +++++|+|+||+|++||++||+|+||||||||+++|+|+++   |++|+|.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~   68 (202)
T cd03233           3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIH   68 (202)
T ss_pred             eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEE
Confidence            47899999999853 34679999999999999999999999999999999999999   8999873

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.58  E-value=1.6e-15  Score=139.19  Aligned_cols=58  Identities=33%  Similarity=0.622  Sum_probs=54.2

Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++||+++|++   +++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus         1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~   58 (163)
T cd03216           1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL   58 (163)
T ss_pred             CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence            578999999974   3699999999999999999999999999999999999999999873

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.58  E-value=1.9e-15  Score=145.14  Aligned_cols=60  Identities=37%  Similarity=0.692  Sum_probs=55.1

Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++||+++|++. .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~   61 (216)
T TIGR00960         2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIR   61 (216)
T ss_pred             eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence            7899999999643 24699999999999999999999999999999999999999999973

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.58  E-value=1.9e-15  Score=142.24  Aligned_cols=60  Identities=33%  Similarity=0.543  Sum_probs=56.4

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .-|++++|+|+|.+   +.||+|+||+|++||.+||+|+||||||||+|++.|+..|++|+|+
T Consensus         7 ~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~   66 (263)
T COG1127           7 PLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL   66 (263)
T ss_pred             ceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEE
Confidence            46999999999964   4699999999999999999999999999999999999999999984

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.58  E-value=4.4e-15  Score=143.65  Aligned_cols=66  Identities=50%  Similarity=0.829  Sum_probs=59.4

Q ss_pred             CccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          445 RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       445 ~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ...+.|+++|++++|+++++.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.
T Consensus         7 ~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~   72 (226)
T cd03248           7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVL   72 (226)
T ss_pred             CcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEE
Confidence            345789999999999754334699999999999999999999999999999999999999999873

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.57  E-value=2.1e-15  Score=145.08  Aligned_cols=61  Identities=46%  Similarity=0.619  Sum_probs=54.8

Q ss_pred             EEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++||+++|++.. .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~   62 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVR   62 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEE
Confidence            57899999997421 14699999999999999999999999999999999999999999973

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.57  E-value=2.4e-15  Score=144.84  Aligned_cols=60  Identities=25%  Similarity=0.503  Sum_probs=54.9

Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++||+++|++. .+++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus         1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~   60 (220)
T cd03263           1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY   60 (220)
T ss_pred             CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence            5789999999742 24699999999999999999999999999999999999999999973

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.57  E-value=3.6e-15  Score=151.53  Aligned_cols=63  Identities=29%  Similarity=0.395  Sum_probs=56.9

Q ss_pred             ccEEEEeeeEECCCCC--CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~--~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ..|+++||+|+|++..  +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+
T Consensus        20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~   84 (320)
T PRK13631         20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQ   84 (320)
T ss_pred             ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE
Confidence            4599999999997431  24699999999999999999999999999999999999999999984

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=99.57  E-value=1.7e-10  Score=119.23  Aligned_cols=302  Identities=15%  Similarity=0.112  Sum_probs=171.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCc---ccccccC-ch---hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 010471          200 IVLVKRLRETLYSALLFQDV---YFFDTEA-VG---GLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWP  272 (510)
Q Consensus       200 ~~i~~~lr~~l~~~ll~lp~---~ff~~~~-~G---~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~  272 (510)
                      ..+....|.++-+++.++=.   .||.-.+ -|   ..=+++|.|+....+...+..+.+.--++-+++....+...+-.
T Consensus       182 ~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~s  261 (728)
T KOG0064|consen  182 SKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSATS  261 (728)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhcc
Confidence            34455555555555544311   4443222 12   22356888988888887777777766666555554444433222


Q ss_pred             H--HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Q 010471          273 L--TLSALLICSF--LSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRI  348 (510)
Q Consensus       273 l--~li~li~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~  348 (510)
                      .  ..+.+++..+  ...+.+.+.+...++..+.....+.....=...+.+-++|--|+..+.|.+..++..+++...-.
T Consensus       262 ~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~  341 (728)
T KOG0064|consen  262 VGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMN  341 (728)
T ss_pred             ccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHH
Confidence            1  1111111111  11222333333333333333333344444466789999999999999999999888888765333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------cCccC---HhH--HHHHHH---HHHHHHHHHHHHH
Q 010471          349 RESMAYGLWNMSFITLYRSTQVMAVLLGGMSIM------------IGQVS---PEQ--LTKYVL---YCEWLIYATWRMV  408 (510)
Q Consensus       349 ~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~------------~g~is---~G~--l~af~~---~~~~~~~~~~~l~  408 (510)
                      ..-....++..+-+++.     =-.|-|.-+|+            .|...   .|.  .-.|..   +......++..++
T Consensus       342 li~k~r~~YiMleqF~m-----KYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlM  416 (728)
T KOG0064|consen  342 LIFKVRLWYIMLEQFVM-----KYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLM  416 (728)
T ss_pred             HHHHHHHHHHHHHHHHH-----HHhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32222223333333221     11243333332            12211   111  222322   2223345667777


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcC----------C---CCCCCC------CCCcc-----CCCccccEEEEeeeEECCCCCC
Q 010471          409 DNLSSLLQSIGATEKVFQLIDL----------L---PSNQFL------SEGVK-----LQRLMGHVQFVNISFHYPSRPT  464 (510)
Q Consensus       409 ~~~~~~~~~~~a~~rl~eil~~----------~---~e~~~~------~~~~~-----~~~~~~~I~f~nVsF~Y~~~~~  464 (510)
                      ....++.+-.+-..|+++.++.          .   +|+.+.      .++..     .......|.|+||-.--|+.  
T Consensus       417 ssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~--  494 (728)
T KOG0064|consen  417 SSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAG--  494 (728)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccCc--
Confidence            7788888888877888766531          0   111000      00000     01123469999999998865  


Q ss_pred             CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCce
Q 010471          465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ  508 (510)
Q Consensus       465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~  508 (510)
                      +-+..++||+|++|--.-|.||+|||||+|.++|.|+||..+|.
T Consensus       495 ~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~  538 (728)
T KOG0064|consen  495 DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGL  538 (728)
T ss_pred             ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCe
Confidence            35899999999999999999999999999999999999998886

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.57  E-value=3.9e-15  Score=143.17  Aligned_cols=61  Identities=25%  Similarity=0.447  Sum_probs=55.3

Q ss_pred             EEEEeeeEECCCCCC-CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~-~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++||+++|++++. +++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus         2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~   63 (218)
T cd03266           2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT   63 (218)
T ss_pred             eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEE
Confidence            789999999975321 2699999999999999999999999999999999999999999973

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.57  E-value=3.6e-15  Score=137.35  Aligned_cols=59  Identities=25%  Similarity=0.470  Sum_probs=54.6

Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++||+++|+++  +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~   59 (166)
T cd03223           1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIG   59 (166)
T ss_pred             CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence            5789999999743  4699999999999999999999999999999999999999999873

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.57  E-value=3.5e-15  Score=144.41  Aligned_cols=61  Identities=34%  Similarity=0.637  Sum_probs=55.1

Q ss_pred             EEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++||+++|++++ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~   63 (228)
T cd03257           2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSII   63 (228)
T ss_pred             eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence            78999999997431 12699999999999999999999999999999999999999999873

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.56  E-value=3.9e-15  Score=138.71  Aligned_cols=60  Identities=35%  Similarity=0.667  Sum_probs=55.1

Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++|++|+|+++ +.++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus         1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~   60 (178)
T cd03247           1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT   60 (178)
T ss_pred             CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEE
Confidence            5789999999753 24699999999999999999999999999999999999999999973

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.56  E-value=3.6e-15  Score=144.97  Aligned_cols=62  Identities=39%  Similarity=0.561  Sum_probs=56.2

Q ss_pred             cEEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      -|+++||+|+|+++. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.
T Consensus         5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~   67 (233)
T PRK11629          5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVI   67 (233)
T ss_pred             eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence            489999999997432 14699999999999999999999999999999999999999999973

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.56  E-value=4.2e-15  Score=148.44  Aligned_cols=62  Identities=34%  Similarity=0.534  Sum_probs=56.3

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++....++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~   65 (279)
T PRK13650          4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQII   65 (279)
T ss_pred             eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence            48999999999743224699999999999999999999999999999999999999999873

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.56  E-value=4.7e-15  Score=142.17  Aligned_cols=59  Identities=41%  Similarity=0.644  Sum_probs=54.7

Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++|++++|+++  .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         2 l~~~~l~~~~~~~--~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~   60 (214)
T TIGR02673         2 IEFHNVSKAYPGG--VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR   60 (214)
T ss_pred             EEEEeeeEEeCCC--ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence            7899999999632  4699999999999999999999999999999999999999999973

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.56  E-value=5.9e-15  Score=142.22  Aligned_cols=62  Identities=39%  Similarity=0.697  Sum_probs=56.9

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ++|+++|++++|++. +.++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus         1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~   62 (221)
T cd03244           1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSIL   62 (221)
T ss_pred             CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEE
Confidence            468999999999753 24799999999999999999999999999999999999999999873

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.56  E-value=4.8e-15  Score=148.57  Aligned_cols=62  Identities=32%  Similarity=0.537  Sum_probs=56.0

Q ss_pred             cEEEEeeeEECCCCC--CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~--~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+|+|++++  +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~   65 (286)
T PRK13646          2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVT   65 (286)
T ss_pred             EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence            389999999997432  24699999999999999999999999999999999999999999873

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.55  E-value=5.5e-15  Score=148.23  Aligned_cols=61  Identities=28%  Similarity=0.565  Sum_probs=55.4

Q ss_pred             EEEEeeeEECCCCC--CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~--~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++||+|+|+++.  .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+
T Consensus         2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~   64 (288)
T PRK13643          2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVT   64 (288)
T ss_pred             EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEE
Confidence            78999999997432  13599999999999999999999999999999999999999999974

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.55  E-value=5e-15  Score=147.51  Aligned_cols=60  Identities=28%  Similarity=0.495  Sum_probs=55.7

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      -|+++||+|+|+++  .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~   63 (274)
T PRK13647          4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK   63 (274)
T ss_pred             eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEE
Confidence            48999999999742  4699999999999999999999999999999999999999999983

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.55  E-value=5.4e-15  Score=142.48  Aligned_cols=61  Identities=41%  Similarity=0.592  Sum_probs=55.3

Q ss_pred             EEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++||+++|++.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~   63 (221)
T TIGR02211         2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVL   63 (221)
T ss_pred             EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence            78999999997422 24699999999999999999999999999999999999999999973

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.55  E-value=6.6e-15  Score=136.53  Aligned_cols=60  Identities=45%  Similarity=0.791  Sum_probs=55.0

Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++|++++|++. +.++++|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus         1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~   60 (173)
T cd03246           1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR   60 (173)
T ss_pred             CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEE
Confidence            5789999999753 24699999999999999999999999999999999999999999873

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.55  E-value=5.8e-15  Score=144.38  Aligned_cols=59  Identities=41%  Similarity=0.637  Sum_probs=54.6

Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++||+++|++  +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~   60 (243)
T TIGR02315         2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL   60 (243)
T ss_pred             eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEE
Confidence            789999999962  24699999999999999999999999999999999999999999973

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.55  E-value=5.8e-15  Score=142.21  Aligned_cols=61  Identities=36%  Similarity=0.581  Sum_probs=54.8

Q ss_pred             EEEEeeeEECCCCCC-CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~-~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++|++++|++... +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~   62 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVL   62 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence            578999999974211 4699999999999999999999999999999999999999999973

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.55  E-value=6.2e-15  Score=140.12  Aligned_cols=60  Identities=50%  Similarity=0.634  Sum_probs=54.6

Q ss_pred             EEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       450 I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      |+++||+-.|.... ..++|+|+||+|++||.|||+||||||||||+++|.|+-.|++|+|
T Consensus         2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v   62 (226)
T COG1136           2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEV   62 (226)
T ss_pred             cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE
Confidence            67999999997432 2469999999999999999999999999999999999999999986

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.55  E-value=5.8e-15  Score=148.36  Aligned_cols=60  Identities=33%  Similarity=0.564  Sum_probs=55.7

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ..|+++||+.+|.+.  . +++|+|++|+.||.++|||||||||||++++|+||.+|++|+|+
T Consensus         2 ~~i~l~~v~K~yg~~--~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~   61 (338)
T COG3839           2 AELELKNVRKSFGSF--E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL   61 (338)
T ss_pred             cEEEEeeeEEEcCCc--e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence            469999999999642  2 99999999999999999999999999999999999999999984

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.55  E-value=6.4e-15  Score=140.28  Aligned_cols=61  Identities=34%  Similarity=0.477  Sum_probs=55.1

Q ss_pred             EEEEeeeEECCCCCC--CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPT--VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~--~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++||+++|+++.+  .++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|+
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~   63 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVS   63 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEE
Confidence            578999999975311  3699999999999999999999999999999999999999999984

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK10908 cell division protein FtsE; Provisional

Probab=99.55  E-value=6.4e-15  Score=142.13  Aligned_cols=59  Identities=29%  Similarity=0.506  Sum_probs=54.7

Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++||+++|+++  .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~   60 (222)
T PRK10908          2 IRFEHVSKAYLGG--RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW   60 (222)
T ss_pred             EEEEeeEEEecCC--CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence            7899999999532  4699999999999999999999999999999999999999999973

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.55  E-value=7.3e-15  Score=142.30  Aligned_cols=62  Identities=32%  Similarity=0.454  Sum_probs=56.0

Q ss_pred             cEEEEeeeEECCCCCC-CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~-~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|+++.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~   68 (228)
T PRK10584          6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVS   68 (228)
T ss_pred             eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEE
Confidence            5899999999975321 2599999999999999999999999999999999999999999873

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.55  E-value=7.2e-15  Score=147.35  Aligned_cols=62  Identities=31%  Similarity=0.549  Sum_probs=56.1

Q ss_pred             cEEEEeeeEECCCCC--CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~--~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+|+|++..  ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~   65 (287)
T PRK13637          2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKII   65 (287)
T ss_pred             EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEE
Confidence            389999999997422  14699999999999999999999999999999999999999999983

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.55  E-value=5.6e-15  Score=149.28  Aligned_cols=60  Identities=25%  Similarity=0.520  Sum_probs=56.3

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ..|+++||+-+|.   +..+++|+||+|++||.++|.|||||||||++++|+||.+|++|+|.
T Consensus         4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~   63 (352)
T COG3842           4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL   63 (352)
T ss_pred             ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence            4699999999996   25799999999999999999999999999999999999999999984

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.55  E-value=9.4e-15  Score=139.42  Aligned_cols=63  Identities=33%  Similarity=0.647  Sum_probs=57.4

Q ss_pred             cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .+.|+++|++++|++. +.++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus         4 ~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~   66 (207)
T cd03369           4 HGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIE   66 (207)
T ss_pred             CCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEE
Confidence            3579999999999743 24699999999999999999999999999999999999999999973

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.55  E-value=1.4e-14  Score=144.45  Aligned_cols=81  Identities=30%  Similarity=0.485  Sum_probs=66.3

Q ss_pred             HHHHHhhcCCCCCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          422 EKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       422 ~rl~eil~~~~e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      |.+.|++..+++++   +..+.......|+++||+++  +   +++|+|+||+|++||++||+|+||||||||+++|+|+
T Consensus        15 ~~~~~~~~~~~~~~---~~~~~~~~~~~l~i~nls~~--~---~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl   86 (282)
T cd03291          15 EGFGELLEKAKQEN---NDRKHSSDDNNLFFSNLCLV--G---APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE   86 (282)
T ss_pred             HHHHHHHhcccccc---cccccCCCCCeEEEEEEEEe--c---ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            57788887765533   22223344567999999996  2   3599999999999999999999999999999999999


Q ss_pred             cCCCCceeC
Q 010471          502 YEPSDGQVC  510 (510)
Q Consensus       502 y~p~sG~I~  510 (510)
                      ++|++|+|.
T Consensus        87 ~~p~~G~I~   95 (282)
T cd03291          87 LEPSEGKIK   95 (282)
T ss_pred             CCCCCcEEE
Confidence            999999973

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.55  E-value=7.1e-15  Score=142.88  Aligned_cols=61  Identities=31%  Similarity=0.529  Sum_probs=55.2

Q ss_pred             EEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++||+++|+++. ..++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus         2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~   63 (233)
T cd03258           2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVL   63 (233)
T ss_pred             eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence            78999999997431 12699999999999999999999999999999999999999999873

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.54  E-value=9.3e-15  Score=141.63  Aligned_cols=61  Identities=43%  Similarity=0.910  Sum_probs=56.3

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ++|+++|++|+|+++  .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.
T Consensus         1 ~~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~   61 (229)
T cd03254           1 GEIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQIL   61 (229)
T ss_pred             CeEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence            469999999999742  4699999999999999999999999999999999999999999983

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.54  E-value=6.2e-15  Score=140.74  Aligned_cols=58  Identities=22%  Similarity=0.420  Sum_probs=54.6

Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++||+++|++   ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+
T Consensus         3 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~   60 (207)
T PRK13539          3 LEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIK   60 (207)
T ss_pred             EEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence            899999999964   3599999999999999999999999999999999999999999983

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.54  E-value=5.6e-15  Score=144.19  Aligned_cols=59  Identities=34%  Similarity=0.576  Sum_probs=55.2

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++   +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~   60 (239)
T cd03296           2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTIL   60 (239)
T ss_pred             EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence            4899999999964   4699999999999999999999999999999999999999999973

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.54  E-value=7.6e-15  Score=143.13  Aligned_cols=61  Identities=54%  Similarity=0.956  Sum_probs=55.7

Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++|++++|+++.+.++|+|+||++++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus         1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~   61 (238)
T cd03249           1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEIL   61 (238)
T ss_pred             CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEE
Confidence            5789999999754335799999999999999999999999999999999999999999973

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.54  E-value=9.1e-15  Score=146.82  Aligned_cols=64  Identities=31%  Similarity=0.510  Sum_probs=57.5

Q ss_pred             cccEEEEeeeEECCCCC--CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          447 MGHVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       447 ~~~I~f~nVsF~Y~~~~--~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .++|+++||+++|++++  ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~   69 (289)
T PRK13645          4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTI   69 (289)
T ss_pred             cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence            36799999999997532  13599999999999999999999999999999999999999999973

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.54  E-value=6.3e-15  Score=136.63  Aligned_cols=58  Identities=29%  Similarity=0.634  Sum_probs=53.9

Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ++++||+++|++   .++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus         1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~   58 (173)
T cd03230           1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK   58 (173)
T ss_pred             CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence            478999999974   3699999999999999999999999999999999999999999873

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.54  E-value=7.2e-15  Score=145.69  Aligned_cols=61  Identities=38%  Similarity=0.678  Sum_probs=55.5

Q ss_pred             EEEEeeeEECCCC------CCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~------~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++||+|+|++.      .++++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus         3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~   69 (265)
T TIGR02769         3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVS   69 (265)
T ss_pred             EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence            8899999999632      135699999999999999999999999999999999999999999973

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.54  E-value=7.1e-15  Score=150.28  Aligned_cols=61  Identities=31%  Similarity=0.548  Sum_probs=55.7

Q ss_pred             EEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++||+++|++.+ ..++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus         2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~   63 (343)
T TIGR02314         2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVI   63 (343)
T ss_pred             EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence            89999999997422 24699999999999999999999999999999999999999999984

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.54  E-value=9.1e-15  Score=145.91  Aligned_cols=62  Identities=37%  Similarity=0.546  Sum_probs=56.6

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      -|+++||+|+|++.+..++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~   65 (277)
T PRK13642          4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVK   65 (277)
T ss_pred             eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEE
Confidence            48999999999753334699999999999999999999999999999999999999999973

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.54  E-value=8.8e-15  Score=146.94  Aligned_cols=62  Identities=32%  Similarity=0.539  Sum_probs=56.2

Q ss_pred             cEEEEeeeEECCCCC--CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~--~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+|+|++.+  ..++|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~   65 (290)
T PRK13634          2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVT   65 (290)
T ss_pred             EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE
Confidence            489999999997432  14699999999999999999999999999999999999999999983

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.54  E-value=8.5e-15  Score=131.63  Aligned_cols=58  Identities=33%  Similarity=0.589  Sum_probs=54.0

Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ++++||+++|++   .++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.
T Consensus         1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~   58 (144)
T cd03221           1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT   58 (144)
T ss_pred             CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEE
Confidence            578999999964   3699999999999999999999999999999999999999999873

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.53  E-value=9e-15  Score=141.29  Aligned_cols=61  Identities=34%  Similarity=0.594  Sum_probs=55.0

Q ss_pred             EEEEeeeEECCCC---C-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSR---P-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~---~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++||+++|++.   + .+++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.
T Consensus         2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~   66 (224)
T TIGR02324         2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRIL   66 (224)
T ss_pred             EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE
Confidence            7899999999631   1 24699999999999999999999999999999999999999999873

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.53  E-value=1e-14  Score=145.84  Aligned_cols=61  Identities=38%  Similarity=0.538  Sum_probs=55.6

Q ss_pred             EEEEeeeEECCCCC--CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~--~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++||+|+|+++.  ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~   65 (280)
T PRK13649          3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVR   65 (280)
T ss_pred             EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence            88999999997532  13699999999999999999999999999999999999999999973

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.53  E-value=1e-14  Score=142.20  Aligned_cols=60  Identities=43%  Similarity=0.753  Sum_probs=55.1

Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++||+++|+++ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|+
T Consensus         1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~   60 (237)
T cd03252           1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL   60 (237)
T ss_pred             CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence            5789999999743 35799999999999999999999999999999999999999999973

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.53  E-value=1.4e-14  Score=139.61  Aligned_cols=62  Identities=52%  Similarity=0.904  Sum_probs=56.7

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ++|+++|++++|+++ ++++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus         1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~   62 (220)
T cd03245           1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL   62 (220)
T ss_pred             CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEE
Confidence            469999999999743 24699999999999999999999999999999999999999999873

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.53  E-value=1.1e-14  Score=147.04  Aligned_cols=62  Identities=31%  Similarity=0.533  Sum_probs=55.9

Q ss_pred             cEEEEeeeEECCCCC--CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~--~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+|+|++..  +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~   65 (305)
T PRK13651          2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIE   65 (305)
T ss_pred             EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE
Confidence            389999999997532  13699999999999999999999999999999999999999999973

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.53  E-value=9.5e-15  Score=142.79  Aligned_cols=59  Identities=32%  Similarity=0.640  Sum_probs=55.3

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+|+|++   +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~   61 (241)
T PRK14250          3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSIL   61 (241)
T ss_pred             eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence            5899999999964   3699999999999999999999999999999999999999999973

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.53  E-value=1.1e-14  Score=140.36  Aligned_cols=61  Identities=28%  Similarity=0.450  Sum_probs=55.4

Q ss_pred             EEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++||+++|++.+ ++.+|+|+||++++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus         2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~   63 (220)
T TIGR02982         2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLK   63 (220)
T ss_pred             EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence            78999999996422 24699999999999999999999999999999999999999999983

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.53  E-value=1.1e-14  Score=140.83  Aligned_cols=59  Identities=31%  Similarity=0.542  Sum_probs=55.4

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++   .++++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~   65 (225)
T PRK10247          7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLL   65 (225)
T ss_pred             eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEE
Confidence            5999999999963   4699999999999999999999999999999999999999999873

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.53  E-value=1.2e-14  Score=144.78  Aligned_cols=59  Identities=37%  Similarity=0.671  Sum_probs=54.8

Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++||+++|+++  .++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus         2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~   60 (274)
T PRK13644          2 IRLENVSYSYPDG--TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL   60 (274)
T ss_pred             EEEEEEEEEcCCC--CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence            7899999999642  4699999999999999999999999999999999999999999873

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.53  E-value=9.7e-15  Score=145.33  Aligned_cols=60  Identities=22%  Similarity=0.456  Sum_probs=55.8

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|+++  +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         6 ~l~~~~l~~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~   65 (272)
T PRK15056          6 GIVVNDVTVTWRNG--HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKIS   65 (272)
T ss_pred             eEEEEeEEEEecCC--cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence            59999999999732  4699999999999999999999999999999999999999999973

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.53  E-value=1.4e-14  Score=143.06  Aligned_cols=65  Identities=29%  Similarity=0.528  Sum_probs=59.2

Q ss_pred             CccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          445 RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       445 ~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ...+.|+++||+++|++. +..+|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|+
T Consensus        15 ~~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~   79 (257)
T cd03288          15 GLGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIV   79 (257)
T ss_pred             cCCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEE
Confidence            356889999999999753 24699999999999999999999999999999999999999999874

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.53  E-value=1.2e-14  Score=143.37  Aligned_cols=60  Identities=38%  Similarity=0.536  Sum_probs=55.9

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ..|+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus        11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~   70 (257)
T PRK11247         11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELL   70 (257)
T ss_pred             CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE
Confidence            35999999999964   4699999999999999999999999999999999999999999973

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.53  E-value=1e-14  Score=149.76  Aligned_cols=61  Identities=38%  Similarity=0.615  Sum_probs=55.5

Q ss_pred             EEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++||+|+|+++. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~   63 (343)
T PRK11153          2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVL   63 (343)
T ss_pred             EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Confidence            78999999997321 35799999999999999999999999999999999999999999983

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.52  E-value=1.3e-14  Score=143.99  Aligned_cols=62  Identities=31%  Similarity=0.541  Sum_probs=55.9

Q ss_pred             cEEEEeeeEECCCCC------CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRP------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~------~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++.+      +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~   71 (267)
T PRK15112          4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELL   71 (267)
T ss_pred             eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEE
Confidence            589999999996321      24699999999999999999999999999999999999999999973

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.52  E-value=1.3e-14  Score=144.92  Aligned_cols=62  Identities=34%  Similarity=0.540  Sum_probs=56.4

Q ss_pred             cEEEEeeeEECCCCC---CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRP---TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~---~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      -|+++||+++|++..   ++++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~   68 (280)
T PRK13633          4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVY   68 (280)
T ss_pred             eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence            589999999997432   24699999999999999999999999999999999999999999873

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.52  E-value=1.3e-14  Score=144.89  Aligned_cols=60  Identities=23%  Similarity=0.478  Sum_probs=55.3

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      -++++||+++|+++  .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~   62 (277)
T PRK13652          3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL   62 (277)
T ss_pred             eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence            38899999999643  3599999999999999999999999999999999999999999873

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.52  E-value=1.4e-14  Score=143.97  Aligned_cols=61  Identities=26%  Similarity=0.582  Sum_probs=55.7

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+|+|+||+|+|++. +.++|+|+||+|++||++||||+||||||||+++|+|+++ ++|+|+
T Consensus         1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~   61 (275)
T cd03289           1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQ   61 (275)
T ss_pred             CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEE
Confidence            479999999999743 3569999999999999999999999999999999999998 789884

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.52  E-value=1.1e-14  Score=142.30  Aligned_cols=59  Identities=27%  Similarity=0.435  Sum_probs=55.1

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++   +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~   60 (242)
T PRK11124          2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN   60 (242)
T ss_pred             EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence            3889999999964   3699999999999999999999999999999999999999999983

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.52  E-value=1.7e-14  Score=133.50  Aligned_cols=60  Identities=57%  Similarity=0.982  Sum_probs=54.8

Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++|++++|+++ ..++++|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.
T Consensus         1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~   60 (171)
T cd03228           1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL   60 (171)
T ss_pred             CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEE
Confidence            5789999999753 23699999999999999999999999999999999999999999873

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.52  E-value=1.4e-14  Score=136.80  Aligned_cols=62  Identities=31%  Similarity=0.394  Sum_probs=56.2

Q ss_pred             cEEEEeeeEECCCC---CCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc--CCCCceeC
Q 010471          449 HVQFVNISFHYPSR---PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~---~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y--~p~sG~I~  510 (510)
                      .|+++||+|+|++.   .+.++|+|+||+|++||.++|+|+||||||||+++|+|++  +|++|+|.
T Consensus         3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~   69 (194)
T cd03213           3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVL   69 (194)
T ss_pred             EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEE
Confidence            58999999999752   0257999999999999999999999999999999999999  99999873

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.52  E-value=1.6e-14  Score=143.62  Aligned_cols=61  Identities=33%  Similarity=0.542  Sum_probs=56.2

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|+++ ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~   67 (269)
T PRK13648          7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF   67 (269)
T ss_pred             eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence            59999999999753 24699999999999999999999999999999999999999999873

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.52  E-value=1.9e-14  Score=139.03  Aligned_cols=59  Identities=44%  Similarity=0.720  Sum_probs=56.3

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      .|+++|++|+|+++  .++|+|+|++|++||.++|+|+||||||||+++|.|+++|++|+|
T Consensus         3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v   61 (235)
T COG1122           3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV   61 (235)
T ss_pred             eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEE
Confidence            58999999999865  579999999999999999999999999999999999999999997

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.52  E-value=1.5e-14  Score=144.74  Aligned_cols=60  Identities=28%  Similarity=0.520  Sum_probs=55.7

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      -|+++||+|+|++  ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~   64 (283)
T PRK13636          5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL   64 (283)
T ss_pred             eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEE
Confidence            5999999999963  24699999999999999999999999999999999999999999974

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.52  E-value=1.9e-14  Score=138.08  Aligned_cols=59  Identities=22%  Similarity=0.420  Sum_probs=55.3

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      -|+++|++++|++   +++++|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus        11 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~   69 (214)
T PRK13543         11 LLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQ   69 (214)
T ss_pred             eEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEE
Confidence            5999999999964   3599999999999999999999999999999999999999999973

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.52  E-value=1.4e-14  Score=143.67  Aligned_cols=59  Identities=36%  Similarity=0.621  Sum_probs=55.5

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++   +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus        11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~   69 (265)
T PRK10575         11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEIL   69 (265)
T ss_pred             eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEE
Confidence            5999999999964   3699999999999999999999999999999999999999999973

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.52  E-value=1.6e-14  Score=143.97  Aligned_cols=59  Identities=27%  Similarity=0.535  Sum_probs=54.9

Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++||+++|+++  .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~   60 (275)
T PRK13639          2 LETRDLKYSYPDG--TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL   60 (275)
T ss_pred             EEEEEEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEE
Confidence            7899999999742  4699999999999999999999999999999999999999999983

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.52  E-value=1.6e-14  Score=142.67  Aligned_cols=59  Identities=31%  Similarity=0.406  Sum_probs=55.5

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++   +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~   64 (258)
T PRK11701          6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVH   64 (258)
T ss_pred             eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE
Confidence            5999999999964   4699999999999999999999999999999999999999999973

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.51  E-value=2e-14  Score=144.13  Aligned_cols=62  Identities=31%  Similarity=0.577  Sum_probs=55.9

Q ss_pred             cEEEEeeeEECCCCC--CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~--~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++..  +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~   65 (287)
T PRK13641          2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTIT   65 (287)
T ss_pred             EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence            488999999997421  14699999999999999999999999999999999999999999873

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.51  E-value=1.8e-14  Score=143.23  Aligned_cols=61  Identities=38%  Similarity=0.637  Sum_probs=56.3

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++|++++|+++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.
T Consensus         7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~   67 (271)
T PRK13632          7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK   67 (271)
T ss_pred             EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence            59999999999742 35799999999999999999999999999999999999999999973

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.51  E-value=2.7e-14  Score=145.59  Aligned_cols=65  Identities=34%  Similarity=0.550  Sum_probs=57.5

Q ss_pred             CccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCceeC
Q 010471          445 RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQVC  510 (510)
Q Consensus       445 ~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-----p~sG~I~  510 (510)
                      +..+.|+++||+|+|++. ..++|+|+||+|++||++||||+||||||||+++|+|+++     |++|+|.
T Consensus        76 ~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~  145 (329)
T PRK14257         76 NHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIY  145 (329)
T ss_pred             CcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE
Confidence            345689999999999743 3579999999999999999999999999999999999997     5799873

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.51  E-value=1.4e-14  Score=143.86  Aligned_cols=59  Identities=29%  Similarity=0.494  Sum_probs=55.3

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++   +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~   65 (269)
T PRK11831          7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEIL   65 (269)
T ss_pred             eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence            5999999999963   4699999999999999999999999999999999999999999973

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.51  E-value=1.7e-14  Score=141.80  Aligned_cols=58  Identities=31%  Similarity=0.537  Sum_probs=54.7

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      .|+++||+++|++   +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   60 (250)
T PRK11264          3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTI   60 (250)
T ss_pred             cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE
Confidence            4899999999964   369999999999999999999999999999999999999999987

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.51  E-value=1.3e-14  Score=141.70  Aligned_cols=59  Identities=22%  Similarity=0.459  Sum_probs=55.2

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++   +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~   61 (241)
T PRK10895          3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNII   61 (241)
T ss_pred             eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence            4899999999964   4699999999999999999999999999999999999999999873

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.51  E-value=1.4e-14  Score=139.75  Aligned_cols=62  Identities=32%  Similarity=0.538  Sum_probs=55.9

Q ss_pred             cEEEEeeeEECCCCCC------CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPT------VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~------~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      -++.+|++..|+.+..      ..+++||||+|++||+++|||+|||||||+.++|+|+++|++|+|+
T Consensus         4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~   71 (268)
T COG4608           4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEIL   71 (268)
T ss_pred             eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEE
Confidence            4789999999985321      3689999999999999999999999999999999999999999984

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.51  E-value=1.7e-14  Score=139.61  Aligned_cols=61  Identities=31%  Similarity=0.511  Sum_probs=55.7

Q ss_pred             EEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC---CCCceeC
Q 010471          450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~---p~sG~I~  510 (510)
                      .+|+||+|+|++.+ .+++|+|+||+|++||++||+|+||||||||+|+|+|+++   |++|+|.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~   68 (226)
T cd03234           4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQIL   68 (226)
T ss_pred             ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEE
Confidence            57999999998642 3679999999999999999999999999999999999999   9999873

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.51  E-value=1.9e-14  Score=141.67  Aligned_cols=59  Identities=32%  Similarity=0.398  Sum_probs=55.2

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++   ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~   61 (253)
T TIGR02323         3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTAT   61 (253)
T ss_pred             eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence            4899999999964   3599999999999999999999999999999999999999999983

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.51  E-value=1.9e-14  Score=140.21  Aligned_cols=59  Identities=29%  Similarity=0.546  Sum_probs=55.3

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++   .++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus         5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~   63 (237)
T PRK11614          5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIV   63 (237)
T ss_pred             EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEE
Confidence            4899999999963   4699999999999999999999999999999999999999999873

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.50  E-value=2.5e-14  Score=142.87  Aligned_cols=61  Identities=39%  Similarity=0.593  Sum_probs=56.1

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      -|+++||+++|++. .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~   65 (279)
T PRK13635          5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT   65 (279)
T ss_pred             eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE
Confidence            48999999999743 24699999999999999999999999999999999999999999973

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.50  E-value=2e-14  Score=145.32  Aligned_cols=59  Identities=29%  Similarity=0.574  Sum_probs=55.3

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++   ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~   62 (303)
T TIGR01288         4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKIT   62 (303)
T ss_pred             EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence            5899999999963   4699999999999999999999999999999999999999999983

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.50  E-value=2.4e-14  Score=135.03  Aligned_cols=62  Identities=21%  Similarity=0.426  Sum_probs=55.0

Q ss_pred             cEEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc--CCCCceeC
Q 010471          449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y--~p~sG~I~  510 (510)
                      .|+++|++|+|+++. ++++|+|+||+|++||+++|+|+||||||||+++|+|++  +|++|+|.
T Consensus         3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~   67 (192)
T cd03232           3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEIL   67 (192)
T ss_pred             EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE
Confidence            589999999997421 246999999999999999999999999999999999987  48999873

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.50  E-value=2.1e-14  Score=141.76  Aligned_cols=61  Identities=33%  Similarity=0.569  Sum_probs=56.5

Q ss_pred             cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ++.|+++||+++|++   +.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         3 ~~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~   63 (257)
T PRK10619          3 ENKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIV   63 (257)
T ss_pred             CccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence            356999999999964   4699999999999999999999999999999999999999999873

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.50  E-value=1.9e-14  Score=141.76  Aligned_cols=59  Identities=25%  Similarity=0.558  Sum_probs=55.3

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~   63 (255)
T PRK11300          5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIL   63 (255)
T ss_pred             eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEE
Confidence            4999999999963   4699999999999999999999999999999999999999999873

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.50  E-value=3.1e-14  Score=142.41  Aligned_cols=61  Identities=36%  Similarity=0.647  Sum_probs=55.8

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC---cee
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQV  509 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s---G~I  509 (510)
                      ..|+++|++|+|++. ..++|+|+||+|++||.+||+|+||||||||+++|+|+++|++   |+|
T Consensus         4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i   67 (282)
T PRK13640          4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKI   67 (282)
T ss_pred             ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEE
Confidence            469999999999753 2469999999999999999999999999999999999999998   787

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.50  E-value=2.7e-14  Score=141.14  Aligned_cols=61  Identities=34%  Similarity=0.606  Sum_probs=55.5

Q ss_pred             cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCceeC
Q 010471          447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQVC  510 (510)
Q Consensus       447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-----p~sG~I~  510 (510)
                      .+.|+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++     |++|+|.
T Consensus        11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~   76 (260)
T PRK10744         11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEIL   76 (260)
T ss_pred             CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEE
Confidence            457999999999964   369999999999999999999999999999999999997     5899873

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.50  E-value=2.5e-14  Score=141.06  Aligned_cols=58  Identities=31%  Similarity=0.595  Sum_probs=54.6

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      .|+++||+++|++   .++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|
T Consensus         2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i   59 (255)
T PRK11231          2 TLRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTV   59 (255)
T ss_pred             EEEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEE
Confidence            3889999999963   469999999999999999999999999999999999999999987

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.50  E-value=2.2e-14  Score=130.77  Aligned_cols=60  Identities=35%  Similarity=0.655  Sum_probs=55.7

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      ....++++-+|++.+ +.+|+|+|++|.+||.++++||||||||||+|+++||.+|+.|+|
T Consensus         3 ~l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i   62 (259)
T COG4525           3 MLNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSI   62 (259)
T ss_pred             eeehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceE
Confidence            456789999998764 679999999999999999999999999999999999999999997

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.49  E-value=2.5e-14  Score=140.64  Aligned_cols=59  Identities=29%  Similarity=0.578  Sum_probs=55.3

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~   62 (251)
T PRK09544          4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK   62 (251)
T ss_pred             EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence            4899999999964   3699999999999999999999999999999999999999999983

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.49  E-value=2.9e-14  Score=138.64  Aligned_cols=60  Identities=48%  Similarity=0.850  Sum_probs=55.0

Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++|++++|+++ +.++++|+||++++||.++|+|+||||||||+++|+|+++|++|+|.
T Consensus         1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~   60 (234)
T cd03251           1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL   60 (234)
T ss_pred             CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEE
Confidence            5789999999753 24699999999999999999999999999999999999999999873

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.49  E-value=2.8e-14  Score=140.97  Aligned_cols=59  Identities=36%  Similarity=0.526  Sum_probs=55.1

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++   +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~   60 (258)
T PRK13548          2 MLEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVR   60 (258)
T ss_pred             eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE
Confidence            4889999999974   4699999999999999999999999999999999999999999973

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.49  E-value=2.7e-14  Score=139.61  Aligned_cols=59  Identities=24%  Similarity=0.489  Sum_probs=55.0

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      -|+++||+++|++   .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.
T Consensus         2 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~   60 (242)
T TIGR03411         2 ILYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVL   60 (242)
T ss_pred             eEEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE
Confidence            3789999999974   3699999999999999999999999999999999999999999873

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.49  E-value=2.8e-14  Score=141.67  Aligned_cols=62  Identities=39%  Similarity=0.638  Sum_probs=55.8

Q ss_pred             cEEEEeeeEECCCC------CCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~------~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      -|+++||+|+|++.      .++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.
T Consensus         3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~   70 (268)
T PRK10419          3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVS   70 (268)
T ss_pred             eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence            48999999999731      125799999999999999999999999999999999999999999873

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.48  E-value=3.1e-14  Score=141.31  Aligned_cols=61  Identities=31%  Similarity=0.431  Sum_probs=56.0

Q ss_pred             cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCceeC
Q 010471          447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQVC  510 (510)
Q Consensus       447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I~  510 (510)
                      ++.|+++||+++|++   +++|+|+||+|++||++||+|+||||||||+++|+|+++|     ++|+|.
T Consensus        17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~   82 (267)
T PRK14235         17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKIT   82 (267)
T ss_pred             CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEE
Confidence            458999999999964   4699999999999999999999999999999999999985     899873

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.48  E-value=4e-14  Score=139.29  Aligned_cols=61  Identities=28%  Similarity=0.506  Sum_probs=55.0

Q ss_pred             cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC--C---CCceeC
Q 010471          447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQVC  510 (510)
Q Consensus       447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~--p---~sG~I~  510 (510)
                      ++.|+++||+++|++   .++|+|+||+|++||.+||+|+||||||||+++|+|+++  |   ++|+|.
T Consensus         2 ~~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~   67 (252)
T PRK14256          2 NNKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKIL   67 (252)
T ss_pred             CcEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEE
Confidence            467999999999963   469999999999999999999999999999999999986  4   689873

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.48  E-value=3.8e-14  Score=144.41  Aligned_cols=62  Identities=35%  Similarity=0.605  Sum_probs=55.9

Q ss_pred             cEEEEeeeEECCCCC-------CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRP-------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~-------~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      -|+++|++++|+.+.       ...+|+||||+|++||++||||+||||||||+++|+|+++|++|+|.
T Consensus         5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~   73 (327)
T PRK11308          5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELY   73 (327)
T ss_pred             eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEE
Confidence            489999999997421       24699999999999999999999999999999999999999999983

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.48  E-value=2.9e-14  Score=137.83  Aligned_cols=58  Identities=26%  Similarity=0.452  Sum_probs=52.6

Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      +..+|++.+|.+   +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus        23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~   80 (224)
T cd03220          23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVT   80 (224)
T ss_pred             hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence            667777888853   4699999999999999999999999999999999999999999973

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.48  E-value=4.2e-14  Score=134.00  Aligned_cols=46  Identities=35%  Similarity=0.640  Sum_probs=44.1

Q ss_pred             CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       464 ~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      ...+|+||||++++||+++|||++|||||||+|+|+|.|+|++|+|
T Consensus        39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v   84 (249)
T COG1134          39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV   84 (249)
T ss_pred             eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceE
Confidence            3569999999999999999999999999999999999999999997

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.48  E-value=4.5e-14  Score=138.75  Aligned_cols=60  Identities=35%  Similarity=0.621  Sum_probs=54.5

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I~  510 (510)
                      +.|+++||+++|++   .++|+|+||+|++||.+||+|+||||||||+++|+|+++|     ++|+|.
T Consensus         2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~   66 (250)
T PRK14240          2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVL   66 (250)
T ss_pred             CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE
Confidence            57999999999974   3699999999999999999999999999999999999873     689873

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.48  E-value=4.3e-14  Score=140.18  Aligned_cols=60  Identities=27%  Similarity=0.487  Sum_probs=56.1

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ..|+++||+++|++   ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.
T Consensus         6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~   65 (265)
T PRK10253          6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVW   65 (265)
T ss_pred             cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEE
Confidence            47999999999974   3699999999999999999999999999999999999999999873

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.48  E-value=5.2e-14  Score=139.87  Aligned_cols=60  Identities=28%  Similarity=0.447  Sum_probs=55.2

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-----p~sG~I~  510 (510)
                      ..|+++||+++|++   +++|+|+||+|++||++||+|+||||||||+++|+|+++     |++|+|.
T Consensus        12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~   76 (269)
T PRK14259         12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVL   76 (269)
T ss_pred             ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE
Confidence            46999999999964   369999999999999999999999999999999999998     6899873

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.47  E-value=4.6e-14  Score=142.73  Aligned_cols=60  Identities=23%  Similarity=0.528  Sum_probs=56.0

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ..|+++||+++|++   ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.
T Consensus         6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~   65 (306)
T PRK13537          6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS   65 (306)
T ss_pred             ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence            46999999999963   4699999999999999999999999999999999999999999973

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.47  E-value=4.5e-14  Score=144.54  Aligned_cols=59  Identities=24%  Similarity=0.548  Sum_probs=55.5

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++   ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.
T Consensus        41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~   99 (340)
T PRK13536         41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKIT   99 (340)
T ss_pred             eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEE
Confidence            5999999999964   4699999999999999999999999999999999999999999973

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.47  E-value=5e-14  Score=138.68  Aligned_cols=59  Identities=37%  Similarity=0.528  Sum_probs=54.3

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC-----CceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~-----sG~I~  510 (510)
                      .|+++||+++|++   +++|+|+||+|++||++||+|+||||||||+++|+|+++|+     +|+|.
T Consensus         4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~   67 (253)
T PRK14267          4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVR   67 (253)
T ss_pred             eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEE
Confidence            5899999999964   36999999999999999999999999999999999999984     99873

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.47  E-value=5.2e-14  Score=140.01  Aligned_cols=59  Identities=36%  Similarity=0.558  Sum_probs=54.7

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-----p~sG~I~  510 (510)
                      .|+++||+|+|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++     |++|+|.
T Consensus        24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~   87 (271)
T PRK14238         24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKIL   87 (271)
T ss_pred             EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEE
Confidence            6999999999964   369999999999999999999999999999999999997     6999873

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.47  E-value=5e-14  Score=145.09  Aligned_cols=60  Identities=22%  Similarity=0.460  Sum_probs=55.5

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|+++  ..+|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.
T Consensus         3 ~l~i~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~   62 (356)
T PRK11650          3 GLKLQAVRKSYDGK--TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIW   62 (356)
T ss_pred             EEEEEeEEEEeCCC--CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEE
Confidence            48999999999532  4699999999999999999999999999999999999999999984

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.47  E-value=5.4e-14  Score=139.57  Aligned_cols=61  Identities=26%  Similarity=0.416  Sum_probs=55.4

Q ss_pred             cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCceeC
Q 010471          447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQVC  510 (510)
Q Consensus       447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-----p~sG~I~  510 (510)
                      ...|+++||+|+|++   +++|+|+||+|++||.+||+|+||||||||+++|+|+++     |++|+|.
T Consensus        18 ~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~   83 (267)
T PRK14237         18 EIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL   83 (267)
T ss_pred             CeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEE
Confidence            347999999999963   469999999999999999999999999999999999997     5899873

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.47  E-value=6.4e-14  Score=138.03  Aligned_cols=59  Identities=32%  Similarity=0.558  Sum_probs=54.4

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC-----CceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~-----sG~I~  510 (510)
                      .|+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|+     +|+|+
T Consensus         7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~   70 (254)
T PRK14273          7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVI   70 (254)
T ss_pred             eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEE
Confidence            5999999999964   36999999999999999999999999999999999999974     89873

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.47  E-value=5.1e-14  Score=138.61  Aligned_cols=59  Identities=34%  Similarity=0.609  Sum_probs=53.9

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-----p~sG~I~  510 (510)
                      .|+++||+++|++   +++|+|+||+|++||++||+|+||||||||+++|+|+++     |++|+|.
T Consensus         6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~   69 (253)
T PRK14242          6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEIL   69 (253)
T ss_pred             EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEE
Confidence            5999999999963   369999999999999999999999999999999999975     6899873

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.47  E-value=3e-14  Score=141.54  Aligned_cols=57  Identities=37%  Similarity=0.498  Sum_probs=51.6

Q ss_pred             EEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       451 ~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .++||+.+|.+   ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus        26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~   82 (269)
T cd03294          26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVL   82 (269)
T ss_pred             hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE
Confidence            56688888853   4699999999999999999999999999999999999999999873

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.47  E-value=5.2e-14  Score=139.01  Aligned_cols=59  Identities=34%  Similarity=0.512  Sum_probs=54.2

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I~  510 (510)
                      .|+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|     ++|+|.
T Consensus         4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~   67 (258)
T PRK14241          4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVL   67 (258)
T ss_pred             cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEE
Confidence            5899999999974   3699999999999999999999999999999999999975     699873

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.47  E-value=5.5e-14  Score=138.27  Aligned_cols=59  Identities=29%  Similarity=0.438  Sum_probs=54.8

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc--cCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~--y~p~sG~I~  510 (510)
                      .|+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+  ++|++|+|.
T Consensus         7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~   67 (252)
T CHL00131          7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDIL   67 (252)
T ss_pred             eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEE
Confidence            4999999999974   3699999999999999999999999999999999998  789999873

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.46  E-value=5.3e-14  Score=144.53  Aligned_cols=59  Identities=32%  Similarity=0.578  Sum_probs=55.5

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++   ..+|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|+
T Consensus         6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~   64 (351)
T PRK11432          6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIF   64 (351)
T ss_pred             EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEE
Confidence            6999999999963   4699999999999999999999999999999999999999999984

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.46  E-value=8e-14  Score=138.45  Aligned_cols=59  Identities=31%  Similarity=0.554  Sum_probs=54.1

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-----p~sG~I~  510 (510)
                      .|+++|++|+|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++     |++|+|.
T Consensus        21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~   84 (268)
T PRK14248         21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEIL   84 (268)
T ss_pred             eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEE
Confidence            5999999999963   469999999999999999999999999999999999875     7999873

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.46  E-value=7e-14  Score=136.19  Aligned_cols=61  Identities=36%  Similarity=0.584  Sum_probs=55.9

Q ss_pred             EEEEeeeEECCCC--CCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~--~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++|||+.|+..  ....+|+||||+|++||+.+|||+||+|||||++++-||-.|++|+|.
T Consensus         2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~   64 (339)
T COG1135           2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVF   64 (339)
T ss_pred             eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEE
Confidence            8999999999862  124699999999999999999999999999999999999999999984

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.46  E-value=6.3e-14  Score=137.76  Aligned_cols=59  Identities=29%  Similarity=0.510  Sum_probs=54.1

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-----p~sG~I~  510 (510)
                      .|+++||+|+|++   .++|+|+||+|++||.+||+|+||||||||+++|+|+++     |++|+|.
T Consensus         4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~   67 (251)
T PRK14251          4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIK   67 (251)
T ss_pred             eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEE
Confidence            5899999999964   469999999999999999999999999999999999997     4799873

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.46  E-value=5.7e-14  Score=143.14  Aligned_cols=62  Identities=24%  Similarity=0.383  Sum_probs=54.8

Q ss_pred             cEEEEeeeEECCCCCC-CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC----CCCceeC
Q 010471          449 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE----PSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~-~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~----p~sG~I~  510 (510)
                      -|+++||+++|+++.+ ..+|+||||+|++||++||||+||||||||+++|+|+++    |++|+|.
T Consensus         3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~   69 (326)
T PRK11022          3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLE   69 (326)
T ss_pred             eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEE
Confidence            4899999999975322 359999999999999999999999999999999999998    4889873

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.46  E-value=6.9e-14  Score=138.13  Aligned_cols=60  Identities=33%  Similarity=0.570  Sum_probs=54.9

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I~  510 (510)
                      ..|+++||+++|++   +++|+|+||+|++||.+||+|+||||||||+++|+|+++|     ++|+|.
T Consensus        11 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~   75 (258)
T PRK14268         11 PQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVS   75 (258)
T ss_pred             eeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEE
Confidence            36999999999963   4699999999999999999999999999999999999985     799873

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.46  E-value=4.9e-14  Score=130.39  Aligned_cols=56  Identities=29%  Similarity=0.447  Sum_probs=52.3

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD  506 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s  506 (510)
                      ..++.+|+++.|.+   ..+|+|||++||+++++|++|||||||||+++.+-|+.|..+
T Consensus         6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~   61 (253)
T COG1117           6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIP   61 (253)
T ss_pred             ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCc
Confidence            46999999999963   569999999999999999999999999999999999999987

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.46  E-value=6.3e-14  Score=145.18  Aligned_cols=59  Identities=32%  Similarity=0.496  Sum_probs=55.3

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++   ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus         3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~   61 (369)
T PRK11000          3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLF   61 (369)
T ss_pred             EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Confidence            5899999999964   4699999999999999999999999999999999999999999983

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.46  E-value=4.1e-14  Score=126.40  Aligned_cols=62  Identities=39%  Similarity=0.510  Sum_probs=55.3

Q ss_pred             cEEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      -|+.+|++..-++.. ...+|++|+|.|++||.+|||||||||||||+.+|+|+-+|++|+|+
T Consensus         6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~   68 (228)
T COG4181           6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVR   68 (228)
T ss_pred             eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEE
Confidence            578888888876543 34699999999999999999999999999999999999999999984

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.46  E-value=6.3e-14  Score=144.17  Aligned_cols=59  Identities=24%  Similarity=0.473  Sum_probs=55.4

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++   ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.
T Consensus         4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~   62 (353)
T TIGR03265         4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIY   62 (353)
T ss_pred             EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEE
Confidence            5999999999964   4599999999999999999999999999999999999999999984

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.46  E-value=6.8e-14  Score=143.93  Aligned_cols=59  Identities=29%  Similarity=0.561  Sum_probs=55.2

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++   ..+|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|+
T Consensus         2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~   60 (353)
T PRK10851          2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIR   60 (353)
T ss_pred             EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence            4899999999964   3699999999999999999999999999999999999999999984

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.46  E-value=6.9e-14  Score=137.42  Aligned_cols=59  Identities=34%  Similarity=0.571  Sum_probs=54.1

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I~  510 (510)
                      .|+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|     ++|+|.
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~   66 (250)
T PRK14247          3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVY   66 (250)
T ss_pred             eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEE
Confidence            4899999999964   3699999999999999999999999999999999999984     699873

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.45  E-value=8e-14  Score=137.33  Aligned_cols=58  Identities=33%  Similarity=0.528  Sum_probs=54.3

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC----CCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP----SDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p----~sG~I~  510 (510)
                      .|+++||+++| +   +++|+|+||+|++||.++|+|+||||||||+++|+|+++|    ++|+|.
T Consensus         4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~   65 (254)
T PRK10418          4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVL   65 (254)
T ss_pred             EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEE
Confidence            59999999999 3   3699999999999999999999999999999999999999    999873

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.45  E-value=7.2e-14  Score=142.56  Aligned_cols=62  Identities=29%  Similarity=0.557  Sum_probs=55.9

Q ss_pred             cEEEEeeeEECCCCC----------CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRP----------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~----------~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      -|+++|++.+|+.+.          ...+++|+||+|++||++||||+||||||||+++|+|+++|++|+|.
T Consensus         8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~   79 (331)
T PRK15079          8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVA   79 (331)
T ss_pred             eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEE
Confidence            489999999997321          24699999999999999999999999999999999999999999984

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.45  E-value=8.8e-14  Score=136.77  Aligned_cols=59  Identities=27%  Similarity=0.544  Sum_probs=54.6

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC-----Ccee
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQV  509 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~-----sG~I  509 (510)
                      ..|+++||+|+|++   +++|+|+||+|++||++||+|+||||||||+++|+|+++|+     +|+|
T Consensus         3 ~~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v   66 (251)
T PRK14249          3 PKIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAV   66 (251)
T ss_pred             ceEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEE
Confidence            46999999999964   46999999999999999999999999999999999999997     5887

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.45  E-value=7.7e-14  Score=137.07  Aligned_cols=59  Identities=27%  Similarity=0.474  Sum_probs=54.2

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I~  510 (510)
                      .|+++||+|+|++   +++|+|+||+|++||++||+|+||||||||+++|+|+++|     ++|+|.
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~   66 (250)
T PRK14262          3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIY   66 (250)
T ss_pred             eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEE
Confidence            4899999999963   4699999999999999999999999999999999999984     899873

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.45  E-value=7.5e-14  Score=136.85  Aligned_cols=59  Identities=32%  Similarity=0.517  Sum_probs=54.0

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC---CCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~---p~sG~I~  510 (510)
                      .|+++||++.|++   +++|+|+||+|++||.++|+|+||||||||+++|+|+++   |++|+|.
T Consensus         2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~   63 (246)
T PRK14269          2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVE   63 (246)
T ss_pred             ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEE
Confidence            4889999999974   469999999999999999999999999999999999985   7999873

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.45  E-value=9.8e-14  Score=143.60  Aligned_cols=60  Identities=27%  Similarity=0.490  Sum_probs=55.9

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ..|+++||+++|++   .++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.
T Consensus        13 ~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~   72 (375)
T PRK09452         13 PLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIM   72 (375)
T ss_pred             ceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Confidence            35999999999964   4699999999999999999999999999999999999999999984

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.44  E-value=8.7e-14  Score=137.48  Aligned_cols=59  Identities=36%  Similarity=0.543  Sum_probs=53.9

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC--C---CCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~--p---~sG~I~  510 (510)
                      .|+++||+|+|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++  |   ++|+|.
T Consensus        12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~   75 (259)
T PRK14274         12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMN   75 (259)
T ss_pred             eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEE
Confidence            5999999999964   369999999999999999999999999999999999997  3   589873

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.44  E-value=1.4e-13  Score=137.80  Aligned_cols=60  Identities=28%  Similarity=0.527  Sum_probs=55.1

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-----p~sG~I~  510 (510)
                      ..|+++||+++|++   +++|+|+||+|++||++||+|+||||||||+++|+|+++     |++|+|.
T Consensus        38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~  102 (285)
T PRK14254         38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELT  102 (285)
T ss_pred             ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEE
Confidence            46999999999964   469999999999999999999999999999999999997     6899873

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.44  E-value=1.1e-13  Score=136.46  Aligned_cols=59  Identities=31%  Similarity=0.468  Sum_probs=54.8

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      ..|+++|++++|++   +++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|
T Consensus         9 ~~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v   67 (257)
T PRK14246          9 DVFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKI   67 (257)
T ss_pred             hheeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCce
Confidence            35999999999964   469999999999999999999999999999999999999999765

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.44  E-value=1.4e-13  Score=137.08  Aligned_cols=60  Identities=27%  Similarity=0.464  Sum_probs=54.9

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I~  510 (510)
                      +.|+++||+|+|++   +++|+|+||+|++||.+||+|+||||||||+++|+|+++|     ++|+|.
T Consensus        24 ~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~   88 (272)
T PRK14236         24 TALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIR   88 (272)
T ss_pred             cEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEE
Confidence            46999999999964   3699999999999999999999999999999999999984     899873

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.44  E-value=9.9e-14  Score=144.52  Aligned_cols=59  Identities=24%  Similarity=0.495  Sum_probs=55.4

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++   +++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.
T Consensus         3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~   61 (402)
T PRK09536          3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVL   61 (402)
T ss_pred             eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEE
Confidence            4899999999964   4699999999999999999999999999999999999999999984

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.44  E-value=1.1e-13  Score=142.58  Aligned_cols=61  Identities=26%  Similarity=0.562  Sum_probs=56.7

Q ss_pred             cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC--ceeC
Q 010471          447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD--GQVC  510 (510)
Q Consensus       447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s--G~I~  510 (510)
                      .+.|+++||+++|++   ..+|+|+||+|++||.+||+||||||||||+++|+|+++|++  |+|.
T Consensus         3 ~~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~   65 (362)
T TIGR03258         3 CGGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIA   65 (362)
T ss_pred             ceEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEE
Confidence            367999999999964   469999999999999999999999999999999999999999  9973

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.44  E-value=1.3e-13  Score=140.78  Aligned_cols=62  Identities=26%  Similarity=0.424  Sum_probs=55.6

Q ss_pred             cEEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC---CceeC
Q 010471          449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~---sG~I~  510 (510)
                      -++++|++++|+++. ...+++|+||+|++||++||||+||||||||+++|+|+++|+   +|+|.
T Consensus        12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~   77 (330)
T PRK09473         12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSAT   77 (330)
T ss_pred             eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEE
Confidence            589999999996432 246999999999999999999999999999999999999996   99873

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.44  E-value=1.3e-13  Score=136.14  Aligned_cols=60  Identities=35%  Similarity=0.543  Sum_probs=54.6

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I~  510 (510)
                      +.|+++||+++|++   +++|+|+||+|++||.+||+|+||||||||+|+|+|+++|     ++|+|.
T Consensus         6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~   70 (259)
T PRK14260          6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVD   70 (259)
T ss_pred             ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEE
Confidence            46999999999963   4699999999999999999999999999999999999986     489873

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.44  E-value=1.1e-13  Score=137.26  Aligned_cols=59  Identities=32%  Similarity=0.489  Sum_probs=53.9

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-----p~sG~I~  510 (510)
                      .|+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++     |++|+|.
T Consensus        10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~   73 (264)
T PRK14243         10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVT   73 (264)
T ss_pred             EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEE
Confidence            5999999999963   369999999999999999999999999999999999987     4799873

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.43  E-value=1.2e-13  Score=135.77  Aligned_cols=59  Identities=24%  Similarity=0.455  Sum_probs=53.9

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC-----CceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~-----sG~I~  510 (510)
                      -|+++||+++|++   +++|+|+||+|++||.+||+|+||||||||+|+|+|+++|+     +|+|.
T Consensus         4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~   67 (252)
T PRK14272          4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRIL   67 (252)
T ss_pred             EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEE
Confidence            4889999999963   46999999999999999999999999999999999999875     79873

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.43  E-value=1.1e-13  Score=139.76  Aligned_cols=59  Identities=22%  Similarity=0.441  Sum_probs=55.0

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++   ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.
T Consensus         2 ~l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~   60 (301)
T TIGR03522         2 SIRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQ   60 (301)
T ss_pred             EEEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence            3889999999963   4699999999999999999999999999999999999999999983

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.43  E-value=1.5e-13  Score=136.21  Aligned_cols=61  Identities=25%  Similarity=0.489  Sum_probs=55.4

Q ss_pred             cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCceeC
Q 010471          447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQVC  510 (510)
Q Consensus       447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I~  510 (510)
                      .+.|+++||+++|++   .++|+|+||+|++||+++|+|+||||||||+++|+|+.+|     ++|+|+
T Consensus        14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~   79 (265)
T PRK14252         14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEII   79 (265)
T ss_pred             CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEE
Confidence            457999999999974   3699999999999999999999999999999999999985     789873

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.43  E-value=1.3e-13  Score=137.54  Aligned_cols=59  Identities=29%  Similarity=0.542  Sum_probs=54.5

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I~  510 (510)
                      .|+++||+++|++   +++|+|+||+|++||++||+|+||||||||+++|+|+++|     ++|+|.
T Consensus        21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~   84 (276)
T PRK14271         21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVL   84 (276)
T ss_pred             EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEE
Confidence            5899999999964   4699999999999999999999999999999999999996     699873

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.43  E-value=1.4e-13  Score=136.27  Aligned_cols=58  Identities=29%  Similarity=0.415  Sum_probs=53.5

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC---cee
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQV  509 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s---G~I  509 (510)
                      -|+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++   |+|
T Consensus         4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i   64 (262)
T PRK09984          4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHI   64 (262)
T ss_pred             EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEE
Confidence            4899999999964   469999999999999999999999999999999999999874   876

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.43  E-value=9.4e-14  Score=135.33  Aligned_cols=46  Identities=37%  Similarity=0.660  Sum_probs=44.0

Q ss_pred             CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus        34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~   79 (236)
T cd03267          34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVR   79 (236)
T ss_pred             eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence            4699999999999999999999999999999999999999999973

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.43  E-value=1.6e-13  Score=134.94  Aligned_cols=60  Identities=33%  Similarity=0.515  Sum_probs=54.7

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I~  510 (510)
                      ..|+++||+++|++   .++|+|+||+|++||.++|+|+||||||||+++|+|+++|     ++|+|.
T Consensus         3 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~   67 (251)
T PRK14270          3 IKMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVL   67 (251)
T ss_pred             cEEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEE
Confidence            36899999999963   4699999999999999999999999999999999999986     799873

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.42  E-value=1.7e-13  Score=134.85  Aligned_cols=59  Identities=36%  Similarity=0.560  Sum_probs=53.2

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC--C---CCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~--p---~sG~I~  510 (510)
                      .|+++||+++|++   +++|+|+||+|++||++||+|+||||||||+++|+|+++  |   ++|+|.
T Consensus         5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~   68 (252)
T PRK14239          5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIV   68 (252)
T ss_pred             eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEE
Confidence            4899999999964   369999999999999999999999999999999999954  6   489873

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.42  E-value=1.6e-13  Score=135.00  Aligned_cols=59  Identities=27%  Similarity=0.450  Sum_probs=53.3

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I~  510 (510)
                      .|+++||+|+|++   +++|+|+||+|++||.+||+|+||||||||+++|+|+.+|     ++|+|.
T Consensus         6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~   69 (253)
T PRK14261          6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDIL   69 (253)
T ss_pred             eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEE
Confidence            5999999999964   4699999999999999999999999999999999999863     489873

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.42  E-value=1.7e-13  Score=139.99  Aligned_cols=62  Identities=21%  Similarity=0.371  Sum_probs=54.7

Q ss_pred             cEEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC----CCCceeC
Q 010471          449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE----PSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~----p~sG~I~  510 (510)
                      -|+++||+++|+.+. ...+|+|+||+|++||++||||+||||||||+++|+|+.+    |++|+|.
T Consensus         3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~   69 (330)
T PRK15093          3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMR   69 (330)
T ss_pred             eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEE
Confidence            389999999996432 2469999999999999999999999999999999999986    6899873

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.42  E-value=2e-13  Score=144.41  Aligned_cols=63  Identities=30%  Similarity=0.469  Sum_probs=57.8

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ..++++|++|+|+++..+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus        20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~   82 (549)
T PRK13545         20 PFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVD   82 (549)
T ss_pred             ceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEE
Confidence            369999999999865445799999999999999999999999999999999999999999983

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.42  E-value=2.4e-13  Score=134.47  Aligned_cols=59  Identities=41%  Similarity=0.614  Sum_probs=53.9

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC-----Ccee
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQV  509 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~-----sG~I  509 (510)
                      +.|+++||+|+|++   ..+|+|+||+|++||.+||+|+||||||||+++|+|+++|+     +|+|
T Consensus         6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i   69 (261)
T PRK14258          6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRV   69 (261)
T ss_pred             ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceE
Confidence            46999999999964   35999999999999999999999999999999999999985     6765

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.41  E-value=2.4e-13  Score=136.25  Aligned_cols=60  Identities=33%  Similarity=0.457  Sum_probs=54.2

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-----p~sG~I~  510 (510)
                      ..|+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+.+     |++|+|.
T Consensus        38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~  102 (286)
T PRK14275         38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALM  102 (286)
T ss_pred             eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEE
Confidence            46999999999964   359999999999999999999999999999999999865     4999873

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.41  E-value=2.5e-13  Score=146.46  Aligned_cols=59  Identities=27%  Similarity=0.322  Sum_probs=55.1

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++   .++|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.
T Consensus         3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~   61 (490)
T PRK10938          3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQ   61 (490)
T ss_pred             eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEE
Confidence            4899999999964   3599999999999999999999999999999999999999999973

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.41  E-value=2.3e-13  Score=133.92  Aligned_cols=59  Identities=31%  Similarity=0.549  Sum_probs=53.4

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC--C---CCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~--p---~sG~I~  510 (510)
                      .|+++||+++|++   +++|+|+||+|++||.+||+|+||||||||+++|+|+++  |   ++|+|.
T Consensus         5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~   68 (252)
T PRK14255          5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVS   68 (252)
T ss_pred             eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEE
Confidence            4899999999963   469999999999999999999999999999999999975  5   589873

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.41  E-value=2.1e-13  Score=133.95  Aligned_cols=58  Identities=31%  Similarity=0.508  Sum_probs=53.7

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCcee
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQV  509 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I  509 (510)
                      .|+++||+++|++   +++|+|+||+|++||++||+|+||||||||+++|+|+++|     ++|+|
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v   65 (249)
T PRK14253          3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKL   65 (249)
T ss_pred             eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEE
Confidence            5899999999963   4699999999999999999999999999999999999996     58986

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.41  E-value=3.1e-13  Score=140.12  Aligned_cols=61  Identities=30%  Similarity=0.507  Sum_probs=56.4

Q ss_pred             cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ...|+++||+++|++   ..+|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|+
T Consensus        17 ~~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~   77 (377)
T PRK11607         17 TPLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIM   77 (377)
T ss_pred             CceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Confidence            346999999999963   3699999999999999999999999999999999999999999984

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.41  E-value=3.4e-13  Score=134.33  Aligned_cols=59  Identities=27%  Similarity=0.464  Sum_probs=53.9

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCcee
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQV  509 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I  509 (510)
                      ..|+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|     ++|+|
T Consensus        19 ~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i   82 (274)
T PRK14265         19 SVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRL   82 (274)
T ss_pred             ceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceE
Confidence            47999999999964   3699999999999999999999999999999999999974     58987

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.40  E-value=4e-13  Score=127.27  Aligned_cols=59  Identities=32%  Similarity=0.470  Sum_probs=55.4

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      .-|+++||+.+|.+   +++|+|||.+|++||..+|+|++|||||||++++.|.+.|++|.+
T Consensus        30 ~li~l~~v~v~r~g---k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~   88 (257)
T COG1119          30 PLIELKNVSVRRNG---KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV   88 (257)
T ss_pred             ceEEecceEEEECC---EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCce
Confidence            35999999999964   579999999999999999999999999999999999999999976

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.40  E-value=2.6e-13  Score=123.73  Aligned_cols=57  Identities=40%  Similarity=0.706  Sum_probs=52.8

Q ss_pred             EEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       451 ~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      +++|++|+|++   .++|+|+|++|++||.++|+|+||||||||+++|.|+++|++|+|.
T Consensus         1 ~~~~~~~~~~~---~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~   57 (157)
T cd00267           1 EIENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL   57 (157)
T ss_pred             CeEEEEEEeCC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEE
Confidence            36899999974   3699999999999999999999999999999999999999999873

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.40  E-value=2.3e-13  Score=133.80  Aligned_cols=59  Identities=36%  Similarity=0.532  Sum_probs=53.2

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-----p~sG~I~  510 (510)
                      +-+++||+|+|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++     |++|+|.
T Consensus         5 ~~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~   68 (251)
T PRK14244          5 HASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELD   68 (251)
T ss_pred             EEEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEE
Confidence            4578999999963   469999999999999999999999999999999999986     4799873

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.40  E-value=4.1e-13  Score=135.80  Aligned_cols=61  Identities=31%  Similarity=0.459  Sum_probs=55.4

Q ss_pred             cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCceeC
Q 010471          447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQVC  510 (510)
Q Consensus       447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-----p~sG~I~  510 (510)
                      +..|+++||+++|++   .++|+|+||+|++||+++|+|+||||||||+++|+|+++     |++|+|.
T Consensus        43 ~~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~  108 (305)
T PRK14264         43 DAKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVE  108 (305)
T ss_pred             CceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE
Confidence            346999999999974   469999999999999999999999999999999999996     6899873

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.40  E-value=3.3e-13  Score=147.49  Aligned_cols=59  Identities=22%  Similarity=0.415  Sum_probs=55.3

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      .|+++||+++|++  ++++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|
T Consensus         6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i   64 (556)
T PRK11819          6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEA   64 (556)
T ss_pred             EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            5999999999962  2469999999999999999999999999999999999999999997

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.39  E-value=7.8e-14  Score=132.00  Aligned_cols=58  Identities=31%  Similarity=0.637  Sum_probs=53.9

Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .+.+|++-+|.+   -.+++||||++++||.+||+||+||||||++|++.|+|+|++|+|.
T Consensus         5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~   62 (250)
T COG0411           5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVI   62 (250)
T ss_pred             eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEE
Confidence            568899999964   4699999999999999999999999999999999999999999984

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.39  E-value=3e-13  Score=146.14  Aligned_cols=59  Identities=31%  Similarity=0.538  Sum_probs=55.2

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      -|+++||+++|++   .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus         4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~   62 (501)
T PRK10762          4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSIL   62 (501)
T ss_pred             eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence            4899999999963   4699999999999999999999999999999999999999999983

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.39  E-value=3.3e-13  Score=135.44  Aligned_cols=60  Identities=25%  Similarity=0.559  Sum_probs=55.6

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+-+|.+  ++.+|+||||+|++||++|++||||||||||+|+|+|+..|++|+|.
T Consensus         4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~   63 (293)
T COG1131           4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL   63 (293)
T ss_pred             eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence            5889999999963  24699999999999999999999999999999999999999999984

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.39  E-value=3.4e-13  Score=141.30  Aligned_cols=59  Identities=34%  Similarity=0.589  Sum_probs=55.9

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      -++++|++-+|++   .++|+|+||++.+||+.||+|+||+|||||+|.|.|.|+|++|+|+
T Consensus         8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~   66 (500)
T COG1129           8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEIL   66 (500)
T ss_pred             eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEE
Confidence            4889999999974   5799999999999999999999999999999999999999999984

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.39  E-value=4.1e-13  Score=141.62  Aligned_cols=62  Identities=35%  Similarity=0.555  Sum_probs=55.7

Q ss_pred             cEEEEeeeEECCCCC--------CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRP--------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~--------~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      -++++|++.+|..++        ...+++||||++++||++||||+||||||||++.|+|+.+|++|+|.
T Consensus       280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~  349 (539)
T COG1123         280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSII  349 (539)
T ss_pred             eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence            477999999998421        24689999999999999999999999999999999999999999983

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.38  E-value=4.8e-13  Score=146.20  Aligned_cols=59  Identities=22%  Similarity=0.410  Sum_probs=55.0

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      -|+++||+++|++  ++++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|
T Consensus         4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i   62 (552)
T TIGR03719         4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEA   62 (552)
T ss_pred             EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            4899999999962  2469999999999999999999999999999999999999999997

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.38  E-value=3.6e-13  Score=145.86  Aligned_cols=59  Identities=31%  Similarity=0.521  Sum_probs=55.2

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++|++++|++   .++|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.
T Consensus         5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~   63 (510)
T PRK09700          5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTIT   63 (510)
T ss_pred             eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEE
Confidence            4899999999963   4699999999999999999999999999999999999999999973

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.38  E-value=4e-13  Score=145.19  Aligned_cols=59  Identities=31%  Similarity=0.576  Sum_probs=55.2

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++   .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.
T Consensus         4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~   62 (501)
T PRK11288          4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSIL   62 (501)
T ss_pred             eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE
Confidence            4899999999964   3699999999999999999999999999999999999999999983

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.38  E-value=5.2e-13  Score=144.54  Aligned_cols=59  Identities=31%  Similarity=0.492  Sum_probs=55.4

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++   +.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus        11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~   69 (510)
T PRK15439         11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLE   69 (510)
T ss_pred             eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence            5999999999963   4699999999999999999999999999999999999999999973

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.38  E-value=5e-13  Score=131.34  Aligned_cols=59  Identities=32%  Similarity=0.594  Sum_probs=52.7

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc---cCC--CCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL---YEP--SDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~---y~p--~sG~I~  510 (510)
                      .|+++||+++|++   .++|+|+||+|++||.+||+|+||||||||+++|+|+   ++|  ++|+|.
T Consensus         3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~   66 (250)
T PRK14245          3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIR   66 (250)
T ss_pred             EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEE
Confidence            5899999999963   4699999999999999999999999999999999997   454  589873

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.37  E-value=5.3e-13  Score=147.61  Aligned_cols=61  Identities=30%  Similarity=0.484  Sum_probs=55.8

Q ss_pred             cEEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      -|+++|++++|++.. +.++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|
T Consensus        12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i   73 (623)
T PRK10261         12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLV   73 (623)
T ss_pred             eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEE
Confidence            599999999996422 2469999999999999999999999999999999999999999987

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.37  E-value=5.9e-13  Score=130.82  Aligned_cols=59  Identities=34%  Similarity=0.586  Sum_probs=53.3

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-----p~sG~I~  510 (510)
                      .|+++||+++|++   +++|+|+||+|++||.++|+|+||||||||+++|+|+.+     |++|+|.
T Consensus         3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~   66 (250)
T PRK14266          3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIY   66 (250)
T ss_pred             EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEE
Confidence            4889999999963   469999999999999999999999999999999999975     4899873

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.36  E-value=5.6e-13  Score=144.24  Aligned_cols=62  Identities=23%  Similarity=0.518  Sum_probs=55.5

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-CCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-p~sG~I~  510 (510)
                      .|+++||+++|+++++.++|+|+||+|++||++||+|+||||||||+|+|+|+++ |++|+|.
T Consensus       259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~  321 (506)
T PRK13549        259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIF  321 (506)
T ss_pred             eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEE
Confidence            5999999999963223469999999999999999999999999999999999999 5999983

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.36  E-value=6.6e-13  Score=131.40  Aligned_cols=46  Identities=33%  Similarity=0.533  Sum_probs=43.8

Q ss_pred             CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus        37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~   82 (264)
T PRK13546         37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD   82 (264)
T ss_pred             eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence            4589999999999999999999999999999999999999999873

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.36  E-value=6.8e-13  Score=144.07  Aligned_cols=62  Identities=34%  Similarity=0.595  Sum_probs=56.1

Q ss_pred             cEEEEeeeEECCC--CCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPS--RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~--~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++  +.+.++|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.
T Consensus       279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~  342 (520)
T TIGR03269       279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVN  342 (520)
T ss_pred             eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence            5999999999963  1124699999999999999999999999999999999999999999983

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.36  E-value=7.8e-13  Score=143.11  Aligned_cols=59  Identities=31%  Similarity=0.574  Sum_probs=54.6

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC--CCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p--~sG~I~  510 (510)
                      .|+++||+++|++   .++|+|+||+|++||++||+||||||||||+|+|+|+++|  ++|+|.
T Consensus         5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~   65 (506)
T PRK13549          5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEII   65 (506)
T ss_pred             eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEE
Confidence            4999999999963   4699999999999999999999999999999999999997  899973

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.36  E-value=7.8e-13  Score=146.68  Aligned_cols=59  Identities=31%  Similarity=0.492  Sum_probs=55.1

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      -|+++||+++|++   .++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.
T Consensus         3 ~l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~   61 (635)
T PRK11147          3 LISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRII   61 (635)
T ss_pred             EEEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEE
Confidence            4899999999964   4699999999999999999999999999999999999999999973

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.35  E-value=9.2e-13  Score=143.35  Aligned_cols=60  Identities=30%  Similarity=0.524  Sum_probs=55.9

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ..|+++||+++|++   +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus       318 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~  377 (530)
T PRK15064        318 NALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVK  377 (530)
T ss_pred             ceEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence            36999999999964   3699999999999999999999999999999999999999999983

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.35  E-value=8.5e-13  Score=146.03  Aligned_cols=62  Identities=35%  Similarity=0.513  Sum_probs=55.9

Q ss_pred             cEEEEeeeEECCCCC--------CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRP--------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~--------~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      -++++||+++|+.+.        +..+|+|+||+|++||++||||+||||||||+++|+|+.+|++|+|.
T Consensus       313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~  382 (623)
T PRK10261        313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEII  382 (623)
T ss_pred             eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEE
Confidence            599999999996321        24699999999999999999999999999999999999999999984

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.35  E-value=9.9e-13  Score=143.06  Aligned_cols=61  Identities=36%  Similarity=0.539  Sum_probs=54.9

Q ss_pred             cEEEEeeeEECCCC-CCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCcee
Q 010471          449 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQV  509 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~-~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I  509 (510)
                      .|+++||+++|+++ .++++|+|+||+|++||++||||+||||||||+++|+|+++|     ++|+|
T Consensus         5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i   71 (529)
T PRK15134          5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDI   71 (529)
T ss_pred             eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEE
Confidence            48999999999732 124699999999999999999999999999999999999997     79987

>PLN03073 ABC transporter F family; Provisional

Probab=99.34  E-value=1.1e-12  Score=146.17  Aligned_cols=61  Identities=31%  Similarity=0.550  Sum_probs=56.2

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .-|+++||+|+|+++  ..+|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.
T Consensus       507 ~~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~  567 (718)
T PLN03073        507 PIISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVF  567 (718)
T ss_pred             ceEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEE
Confidence            369999999999643  3699999999999999999999999999999999999999999983

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.33  E-value=1.1e-12  Score=136.55  Aligned_cols=58  Identities=43%  Similarity=0.512  Sum_probs=48.4

Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      +++++|.-.|..   ..+|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.
T Consensus        29 ~~~~~~~~~~~~---~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~   86 (400)
T PRK10070         29 LSKEQILEKTGL---SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVL   86 (400)
T ss_pred             ccHHHHHhhcCC---eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEE
Confidence            444444444421   2489999999999999999999999999999999999999999983

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.33  E-value=1.5e-12  Score=144.30  Aligned_cols=60  Identities=25%  Similarity=0.444  Sum_probs=55.9

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ..|+++||+++|++   ..+|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.
T Consensus       311 ~~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~  370 (638)
T PRK10636        311 PLLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIG  370 (638)
T ss_pred             ceEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE
Confidence            35999999999964   4699999999999999999999999999999999999999999983

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.32  E-value=1.6e-12  Score=144.21  Aligned_cols=59  Identities=17%  Similarity=0.475  Sum_probs=55.4

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      -|+++||+++|++   ..+|+|+||+|++|+++||||+||||||||+++|+|+++|++|+|.
T Consensus       319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~  377 (635)
T PRK11147        319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIH  377 (635)
T ss_pred             eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE
Confidence            5999999999964   3699999999999999999999999999999999999999999983

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.32  E-value=1.6e-12  Score=140.61  Aligned_cols=62  Identities=21%  Similarity=0.423  Sum_probs=55.2

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-CCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-~sG~I~  510 (510)
                      -|+++|++++|+++.+..+|+|+||+|++||++||+|+||||||||+|+|+|+++| ++|+|.
T Consensus       257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~  319 (500)
T TIGR02633       257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVF  319 (500)
T ss_pred             eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence            59999999999532224699999999999999999999999999999999999996 899983

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.32  E-value=1.8e-12  Score=128.27  Aligned_cols=59  Identities=25%  Similarity=0.354  Sum_probs=53.9

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I~  510 (510)
                      .+.+++++++|.+   .++|+|+||+|++||++||+|+||||||||+++|+|+++|     ++|+|.
T Consensus         8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~   71 (261)
T PRK14263          8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVH   71 (261)
T ss_pred             eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEE
Confidence            4889999999953   4699999999999999999999999999999999999987     799873

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.31  E-value=2e-12  Score=141.35  Aligned_cols=60  Identities=20%  Similarity=0.439  Sum_probs=55.9

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ..|+++||+++|++   +.+|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.
T Consensus       323 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~  382 (556)
T PRK11819        323 KVIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIK  382 (556)
T ss_pred             eEEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence            35999999999964   3699999999999999999999999999999999999999999983

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.31  E-value=2.2e-12  Score=140.96  Aligned_cols=60  Identities=18%  Similarity=0.419  Sum_probs=55.8

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ..|+++||+++|++   +++|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.
T Consensus       321 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~  380 (552)
T TIGR03719       321 KVIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIK  380 (552)
T ss_pred             eEEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEE
Confidence            35999999999964   3699999999999999999999999999999999999999999983

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.30  E-value=2.1e-12  Score=115.19  Aligned_cols=47  Identities=38%  Similarity=0.682  Sum_probs=44.9

Q ss_pred             CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       464 ~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      +.++|+|+||++.+||.+||.||||||||||+|.++-+..|++|+++
T Consensus        15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~   61 (223)
T COG4619          15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL   61 (223)
T ss_pred             CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEE
Confidence            46899999999999999999999999999999999999999999874

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.29  E-value=3.1e-12  Score=142.11  Aligned_cols=62  Identities=44%  Similarity=0.611  Sum_probs=56.2

Q ss_pred             cEEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++|++++|+++. +.++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|+
T Consensus         4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~   66 (648)
T PRK10535          4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYR   66 (648)
T ss_pred             EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE
Confidence            589999999997422 24699999999999999999999999999999999999999999873

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.29  E-value=2.8e-12  Score=132.01  Aligned_cols=59  Identities=31%  Similarity=0.647  Sum_probs=55.9

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .++++|++-+||+   ..+++||||++++||+-||.|++|+|||||+|.|.|+|+|++|+|+
T Consensus         4 ~l~~~~itK~f~~---~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~   62 (501)
T COG3845           4 ALEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIR   62 (501)
T ss_pred             eEEEeccEEEcCC---EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEE
Confidence            5899999999983   5699999999999999999999999999999999999999999984

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.29  E-value=2.5e-12  Score=125.18  Aligned_cols=59  Identities=29%  Similarity=0.567  Sum_probs=55.0

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+.+|++..|++   ..+++|||++|+.||.+|+-||||||||||+++|+|+..|++|.|.
T Consensus         2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~   60 (345)
T COG1118           2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR   60 (345)
T ss_pred             ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEE
Confidence            4888999999974   4699999999999999999999999999999999999999999984

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.29  E-value=3.5e-12  Score=119.98  Aligned_cols=59  Identities=31%  Similarity=0.587  Sum_probs=55.0

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      -++++||+-.|..   .++|+||||++++||+|+++|++|+||||++|.|+|+.+|.+|+|.
T Consensus         3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~   61 (237)
T COG0410           3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRII   61 (237)
T ss_pred             ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEE
Confidence            4789999999963   4699999999999999999999999999999999999999999984

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.28  E-value=3e-12  Score=138.06  Aligned_cols=60  Identities=25%  Similarity=0.362  Sum_probs=54.2

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-CCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-~sG~I~  510 (510)
                      ..|+++||+++|++   ..+|+|+||+|++||++||+|+||||||||+++|+|+.+| ++|+|.
T Consensus       259 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~  319 (490)
T PRK10938        259 PRIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLT  319 (490)
T ss_pred             ceEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEE
Confidence            35999999999964   3599999999999999999999999999999999999876 689873

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.28  E-value=3.1e-12  Score=138.56  Aligned_cols=57  Identities=18%  Similarity=0.391  Sum_probs=53.3

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++|++++|.     .+|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.
T Consensus       265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~  321 (510)
T PRK09700        265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIR  321 (510)
T ss_pred             EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEE
Confidence            599999999872     389999999999999999999999999999999999999999983

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.28  E-value=2.9e-12  Score=139.38  Aligned_cols=61  Identities=31%  Similarity=0.500  Sum_probs=54.1

Q ss_pred             cEEEEeeeEECCCC--------CCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSR--------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~--------~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|+++        .++.+|+|+||+|++||++||+|+||||||||+|+|+|++ |++|+|.
T Consensus       275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~  343 (529)
T PRK15134        275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIW  343 (529)
T ss_pred             cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEE
Confidence            59999999999631        1246999999999999999999999999999999999999 5899983

>PRK11098 microcin B17 transporter; Reviewed

Probab=99.25  E-value=1.4e-07  Score=97.79  Aligned_cols=221  Identities=14%  Similarity=0.102  Sum_probs=144.2

Q ss_pred             HHHHHHHHHHHHHHHHHhc--CCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---
Q 010471          198 ANIVLVKRLRETLYSALLF--QDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWP---  272 (510)
Q Consensus       198 ~~~~i~~~lr~~l~~~ll~--lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~---  272 (510)
                      ..+++..+.|..+-+++++  +.....|     .-=+|+..|++...+........++.++++.+..+.++..+|..   
T Consensus       161 ~~~~l~irWR~wLT~~yl~~Wl~~r~ie-----nPDQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW~LS~~l~~  235 (409)
T PRK11098        161 FVSHYVFRWRTAMNEYYMAHWQKLRHIE-----GAAQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLVTLSAHVPE  235 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCC-----CccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            3344455555555444444  2222222     35689999999988877777778888899888888888888865   


Q ss_pred             ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHH
Q 010471          273 ----------LTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEK  342 (510)
Q Consensus       273 ----------l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~  342 (510)
                                |..++++...+-..+....+++..++.-+.++.+++....++..=++.        |+.|.++.++..++
T Consensus       236 ~~i~G~ipg~Lv~~aiiyai~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~LVrvrena--------E~~E~~~L~~~F~~  307 (409)
T PRK11098        236 LPIVGHIPYGLVIAAIVWSLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDA--------DRATPPTVRELFSN  307 (409)
T ss_pred             ccccCCCchHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHhHhhhhh--------hHHHHHHHHHHHHH
Confidence                      344444444444555566777777777666666666555443322222        34455555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          343 LAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATE  422 (510)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  422 (510)
                      ..+...+........+.....-.++..++-..+.+-.+..|+++.|.+........++..++..+.+.+.++.+-.+..+
T Consensus       308 V~~N~~rl~~~~~~l~~f~~~y~~~~~i~P~iv~aP~y~aG~ItlG~l~Q~~~AF~~V~~als~~v~sy~~lael~A~~~  387 (409)
T PRK11098        308 VRKNYFRLYFHYMYFNIARILYLQVDNVFGLFLLFPSIVAGTITLGLMTQITNVFGQVRGSFQYLINSWTTIVELLSIYK  387 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54443333322222233333333444455555566677899999999999988899999999999999999999999999


Q ss_pred             HHHHhhcCC
Q 010471          423 KVFQLIDLL  431 (510)
Q Consensus       423 rl~eil~~~  431 (510)
                      |+.++.+.-
T Consensus       388 RL~~F~~~l  396 (409)
T PRK11098        388 RLRSFEAAL  396 (409)
T ss_pred             HHHHHHHHH
Confidence            999997653

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.24  E-value=5.8e-12  Score=135.86  Aligned_cols=57  Identities=23%  Similarity=0.440  Sum_probs=53.4

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|     +++|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.
T Consensus       250 ~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~  306 (491)
T PRK10982        250 ILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTIT  306 (491)
T ss_pred             EEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEE
Confidence            59999999985     2499999999999999999999999999999999999999999983

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.24  E-value=3.7e-12  Score=115.07  Aligned_cols=48  Identities=35%  Similarity=0.634  Sum_probs=45.3

Q ss_pred             CCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          463 PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       463 ~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      +...+.+.|||++.+||+.||+|.+|||||||+|.|+|..+|++|+|+
T Consensus        24 ~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il   71 (267)
T COG4167          24 QTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEIL   71 (267)
T ss_pred             hhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEE
Confidence            445689999999999999999999999999999999999999999985

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.23  E-value=9.9e-12  Score=122.67  Aligned_cols=60  Identities=28%  Similarity=0.566  Sum_probs=51.7

Q ss_pred             EEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCcee
Q 010471          450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQV  509 (510)
Q Consensus       450 I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I  509 (510)
                      ++++|++-+|+... ...+++||||+|++||++||||+|||||||+.+.++|+.++     .+|+|
T Consensus         2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i   67 (316)
T COG0444           2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEI   67 (316)
T ss_pred             ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEE
Confidence            57889999987532 24699999999999999999999999999999999999984     45665

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.23  E-value=2.1e-11  Score=130.73  Aligned_cols=61  Identities=33%  Similarity=0.489  Sum_probs=56.8

Q ss_pred             cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      +.-++++||+|+|+++  +.+++|+||+|++|+++|||||+|+|||||+|+|+|-..|.+|+|
T Consensus       319 ~~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v  379 (530)
T COG0488         319 KLVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV  379 (530)
T ss_pred             CeeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceE
Confidence            3469999999999753  679999999999999999999999999999999999999999987

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.23  E-value=9.3e-12  Score=128.84  Aligned_cols=54  Identities=33%  Similarity=0.390  Sum_probs=48.3

Q ss_pred             eeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       454 nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ++..+|..   ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+
T Consensus        29 ~~~~~~g~---~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~   82 (382)
T TIGR03415        29 EILDETGL---VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVL   82 (382)
T ss_pred             HHHHhhCC---EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE
Confidence            45566642   4689999999999999999999999999999999999999999984

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PLN03073 ABC transporter F family; Provisional

Probab=99.23  E-value=1e-11  Score=138.65  Aligned_cols=59  Identities=20%  Similarity=0.354  Sum_probs=53.5

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc---CCCCcee
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY---EPSDGQV  509 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y---~p~sG~I  509 (510)
                      ..|+++||+|+|++   .++|+|+||+|++|+++||||+||||||||+++|+|..   .|++|+|
T Consensus       176 ~~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I  237 (718)
T PLN03073        176 KDIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQI  237 (718)
T ss_pred             eeEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEE
Confidence            46999999999964   35999999999999999999999999999999999864   5788887

>TIGR00767 rho transcription termination factor Rho

Probab=99.22  E-value=1.6e-11  Score=125.53  Aligned_cols=83  Identities=19%  Similarity=0.247  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccc-----------cceEEeeCCCEEEEE
Q 010471          416 QSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILN-----------HVCLTIEANEVVAIV  484 (510)
Q Consensus       416 ~~~~a~~rl~eil~~~~e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~-----------nisltI~~Ge~vAIV  484 (510)
                      +...+.+|++++++.++...     ..+....+.|+|+||+|.||++  +.+|+           |+++.|.+||+++||
T Consensus       102 R~~~~~ER~~~Ll~v~~vn~-----~~~e~~~~ri~Fe~LTf~YP~e--r~~Le~~~~~~~~R~id~~~pig~Gq~~~Iv  174 (415)
T TIGR00767       102 RSPKEGERYFALLKVESVNG-----DDPEKAKNRVLFENLTPLYPNE--RLRLETSTEDLSTRVLDLFAPIGKGQRGLIV  174 (415)
T ss_pred             eccccHhHHHHHhCCCccCC-----CCccccCCCeEEEEeeecCCCc--cceeecCccccceeeeeeEEEeCCCCEEEEE
Confidence            34457899999999876532     1122345789999999999964  47997           999999999999999


Q ss_pred             cCCCCcHHHHHHHHhcccCCC
Q 010471          485 GLSGSGKSTFVNLLLRLYEPS  505 (510)
Q Consensus       485 G~SGSGKSTL~kLL~g~y~p~  505 (510)
                      |++|||||||++++.+.+...
T Consensus       175 G~~g~GKTtL~~~i~~~I~~n  195 (415)
T TIGR00767       175 APPKAGKTVLLQKIAQAITRN  195 (415)
T ss_pred             CCCCCChhHHHHHHHHhhccc
Confidence            999999999999999987644

Members of this family differ in the specificity of RNA binding.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.22  E-value=1.3e-11  Score=130.34  Aligned_cols=61  Identities=33%  Similarity=0.562  Sum_probs=54.7

Q ss_pred             cEEEEeeeEECCCCCC-CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC----Ccee
Q 010471          449 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS----DGQV  509 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~-~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~----sG~I  509 (510)
                      -++++|++-.|.+..+ ..+++||||+|.+||++||||+|||||||+++.|+|+.++.    +|+|
T Consensus         5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I   70 (539)
T COG1123           5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEV   70 (539)
T ss_pred             eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEE
Confidence            5899999999875422 25999999999999999999999999999999999999988    7887

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.22  E-value=4.6e-10  Score=135.44  Aligned_cols=62  Identities=18%  Similarity=0.450  Sum_probs=56.9

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ..|+++||+++|+++ ++.+|+|+||+|++||++||+|+||||||||+|+|+|+.+|++|+|.
T Consensus      1936 ~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~ 1997 (2272)
T TIGR01257      1936 DILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDAT 1997 (2272)
T ss_pred             ceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEE
Confidence            469999999999642 25699999999999999999999999999999999999999999984

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.21  E-value=1.4e-11  Score=132.11  Aligned_cols=59  Identities=36%  Similarity=0.657  Sum_probs=55.6

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++|++++|++   +++|+|+|+++.+|++++|||++|||||||+|+|+|..+|++|+|.
T Consensus         3 ~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~   61 (530)
T COG0488           3 MITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT   61 (530)
T ss_pred             eEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEe
Confidence            5899999999954   5799999999999999999999999999999999999999999983

>PRK12369 putative transporter; Reviewed

Probab=99.20  E-value=5.6e-07  Score=91.44  Aligned_cols=192  Identities=15%  Similarity=0.077  Sum_probs=123.5

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          232 SRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPL------------TLSALLICSFLSIIVSVYGQYQKRAS  299 (510)
Q Consensus       232 srl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l------------~li~li~~~l~~~~~~~~~~~~~~~~  299 (510)
                      +|++.|++...+........++.++++++....++..+|..+            .+.+++...+..++....++...++.
T Consensus       118 QRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~iLW~lS~~l~~~~~g~ipg~lv~~aiiyai~gt~it~~iGr~L~~ln  197 (326)
T PRK12369        118 QRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIPILWGLSDGVSLPFLKDIPGSLVWIALLISLGGLVISWFVGIKLPGLE  197 (326)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeeecCCCcchHHHHHHHHHHHHHHHHHHHcCcCchhh
Confidence            899999999888777777888888998888888888877433            33334444444455556677666666


Q ss_pred             HHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          300 VLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMS  379 (510)
Q Consensus       300 ~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~l  379 (510)
                      .+.+..+++..-.+...=++.+.   +    .|.++.++..++..+...+.....-..+.......+...++-..+.+-.
T Consensus       198 ~~qq~~EAdFR~~Lvrvre~ae~---~----~E~~~l~~~f~~v~~n~~~~~~~~~~l~~~~~~y~~~~~i~p~li~aP~  270 (326)
T PRK12369        198 YNNQKVEAAFRKELVYAEDDKKN---Y----AKPETLIELFTGLRFNYFRLFLHYGYFNIWLISFSQMMVIVPYLIMAPG  270 (326)
T ss_pred             HHHHHHHHHHHHHHHhhccchhh---h----hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555544333221111110   1    2234444444444433222222222222333333344444445555667


Q ss_pred             HhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010471          380 IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL  430 (510)
Q Consensus       380 v~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~  430 (510)
                      ...|+++.|.+........++.+++..+.+.+.++.+-.+..+|+.++.+.
T Consensus       271 y~sg~i~lG~l~Q~~~AF~~v~~als~~v~~y~~la~~~A~~~RL~~f~~~  321 (326)
T PRK12369        271 LFAGVITLGVLMQISNAFSQVRSSFSVFIRNWTTITELRSIYKRLKEFEKN  321 (326)
T ss_pred             HHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999988888999999999999999999999999999998754

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.19  E-value=1.3e-11  Score=110.61  Aligned_cols=58  Identities=29%  Similarity=0.398  Sum_probs=53.5

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      -++++++|-.|.++   .--+|+||++.|||+.||||+||||||||+++|.+=..|++|+|
T Consensus         6 LL~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v   63 (258)
T COG4107           6 LLSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTV   63 (258)
T ss_pred             ceeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeE
Confidence            47788999999754   46899999999999999999999999999999999999999987

>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.19  E-value=2.1e-07  Score=93.05  Aligned_cols=200  Identities=15%  Similarity=0.078  Sum_probs=140.6

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccC----chhHHHHHHhhH
Q 010471          163 QREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEA----VGGLTSRLTADC  238 (510)
Q Consensus       163 ~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~----~G~lisrl~~D~  238 (510)
                      .+.|...+........++++..+++.....++......+.-..|-..+.++.++-. .||.-..    ...-=+|+++|+
T Consensus        58 ~~~d~~~f~~~l~~~~~l~~~~~~l~~~~~yl~~~L~l~wR~~Lt~~~~~~yl~~~-~yY~l~~~~~~idNpDQRIteDi  136 (281)
T PF06472_consen   58 QQKDLQAFWRLLLLFLLLAIASALLNSILKYLRQRLALRWREWLTRHLHDRYLSNR-TYYRLNNLDGRIDNPDQRITEDI  136 (281)
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hhHhhhccccccccHhhHHHHHH
Confidence            34454455444444444444445555555554444444444555555555555555 6666443    335678999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010471          239 QRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTL-SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETL  317 (510)
Q Consensus       239 ~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~l-i~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l  317 (510)
                      +...+........++..++.++.....+...+..+.. ++++...+...+....++...++..+.++.+++.........
T Consensus       137 ~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r  216 (281)
T PF06472_consen  137 RKFTESSLSLFLGLLKPILDLISFSVILWSISGWLGPWAALIYAILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRLR  216 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHH
Confidence            9999988888888888888888888888877777766 445555556667788888888888888888888888889999


Q ss_pred             chHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          318 CMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFIT  363 (510)
Q Consensus       318 ~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (510)
                      ++.+.|-.++.|+.|.++.++.+++..+...+.............+
T Consensus       217 ~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~  262 (281)
T PF06472_consen  217 ENAESIAFYRGESRERRRLDRRFDALIDNWRRLIRRRLRLGFFTNF  262 (281)
T ss_pred             HhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999877666654444444433333

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.18  E-value=1.2e-11  Score=113.51  Aligned_cols=59  Identities=25%  Similarity=0.542  Sum_probs=54.8

Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ++..+++-+|++  -..+++|+||+++.||+++|-|++|+||||+++.|+.|..|++|.|+
T Consensus         2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~   60 (245)
T COG4555           2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT   60 (245)
T ss_pred             eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEE
Confidence            678999999975  35699999999999999999999999999999999999999999974

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.17  E-value=2.8e-11  Score=144.19  Aligned_cols=62  Identities=24%  Similarity=0.374  Sum_probs=55.2

Q ss_pred             cEEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC---CCCceeC
Q 010471          449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~---p~sG~I~  510 (510)
                      .++++||+++|+.++ ++.+|+|+|++|++||++||+||||||||||+++|+|+.+   |++|+|+
T Consensus       759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~  824 (1394)
T TIGR00956       759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRL  824 (1394)
T ss_pred             eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEE
Confidence            479999999996322 3579999999999999999999999999999999999998   7889984

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.16  E-value=2.3e-11  Score=114.86  Aligned_cols=59  Identities=19%  Similarity=0.529  Sum_probs=55.1

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .+++++|+-+|.+   ..|++|+||++|+||..+++|++|+||||..++|+||.+|++|+|.
T Consensus         2 ~L~ie~vtK~Fg~---k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~   60 (300)
T COG4152           2 ALEIEGVTKSFGD---KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEIT   60 (300)
T ss_pred             ceEEecchhccCc---eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEE
Confidence            4789999999953   5699999999999999999999999999999999999999999984

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.16  E-value=2.2e-11  Score=116.79  Aligned_cols=46  Identities=30%  Similarity=0.582  Sum_probs=44.0

Q ss_pred             CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .++.+||||+||+|+.++++|++|+||||.+|+|.|+..|++|.|+
T Consensus        37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~   82 (325)
T COG4586          37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR   82 (325)
T ss_pred             hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEE
Confidence            4689999999999999999999999999999999999999999974

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.15  E-value=2.6e-11  Score=108.48  Aligned_cols=62  Identities=35%  Similarity=0.588  Sum_probs=52.0

Q ss_pred             cEEEEeeeEECC----CCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYP----SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~----~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .+..+||+-++-    ++-.-|||+|+||++++||++.+=||||||||||++.|-+-|.|++|+|.
T Consensus         4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~   69 (235)
T COG4778           4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQIL   69 (235)
T ss_pred             eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEE
Confidence            356677764442    22234799999999999999999999999999999999999999999984

>PRK13409 putative ATPase RIL; Provisional

Probab=99.15  E-value=3.2e-11  Score=132.16  Aligned_cols=58  Identities=31%  Similarity=0.447  Sum_probs=53.9

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      -++++|++++|++    ..|+++|++|++||++||+|+||||||||+++|+|+.+|++|+|.
T Consensus       340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~  397 (590)
T PRK13409        340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVD  397 (590)
T ss_pred             EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence            5999999999953    259999999999999999999999999999999999999999983

>PLN03211 ABC transporter G-25; Provisional

Probab=99.15  E-value=5e-11  Score=132.23  Aligned_cols=46  Identities=37%  Similarity=0.483  Sum_probs=43.3

Q ss_pred             CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC--CceeC
Q 010471          465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS--DGQVC  510 (510)
Q Consensus       465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~--sG~I~  510 (510)
                      +++|+|+|+++++||++||+||||||||||+++|+|+.+|+  +|+|.
T Consensus        81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~  128 (659)
T PLN03211         81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTIL  128 (659)
T ss_pred             CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEE
Confidence            56999999999999999999999999999999999999986  89873

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.15  E-value=3.2e-11  Score=130.43  Aligned_cols=55  Identities=24%  Similarity=0.457  Sum_probs=50.9

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .++++|+++.       .+++|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.
T Consensus       257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~  311 (501)
T PRK11288        257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVY  311 (501)
T ss_pred             EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEE
Confidence            5899999832       389999999999999999999999999999999999999999984

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.14  E-value=3.6e-11  Score=129.99  Aligned_cols=54  Identities=26%  Similarity=0.495  Sum_probs=50.4

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      -|+++||++        ++|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.
T Consensus       257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~  310 (501)
T PRK10762        257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVT  310 (501)
T ss_pred             EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEE
Confidence            589999983        379999999999999999999999999999999999999999984

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.13  E-value=5.9e-11  Score=142.99  Aligned_cols=62  Identities=26%  Similarity=0.435  Sum_probs=56.9

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ..|+++||+++|+++ ++.+|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus       927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~  988 (2272)
T TIGR01257       927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVL  988 (2272)
T ss_pred             ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEE
Confidence            469999999999632 35799999999999999999999999999999999999999999973

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=7.2e-11  Score=110.85  Aligned_cols=60  Identities=32%  Similarity=0.521  Sum_probs=53.8

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc--cCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~--y~p~sG~I~  510 (510)
                      ..+++|++.+-.+.  +++|+++||+|++||+-||.||+|||||||++.|+|.  |++++|+|+
T Consensus         3 ~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~   64 (251)
T COG0396           3 MLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEIL   64 (251)
T ss_pred             eeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEE
Confidence            46888999887542  4799999999999999999999999999999999997  689999984

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=8.2e-11  Score=107.16  Aligned_cols=56  Identities=29%  Similarity=0.512  Sum_probs=49.0

Q ss_pred             EEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          452 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       452 f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      -+|++..-   .++.++.|+||++.+||.+-|+||+|||||||+++|+|+.+|++|+|+
T Consensus         5 a~~L~~~R---~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~   60 (209)
T COG4133           5 AENLSCER---GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVY   60 (209)
T ss_pred             hhhhhhcc---CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEE
Confidence            34555443   345799999999999999999999999999999999999999999984

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.09  E-value=5.7e-11  Score=123.25  Aligned_cols=60  Identities=33%  Similarity=0.558  Sum_probs=56.3

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      -|.++||+|+|++++  -++++++|-|..++++|+|||+|+|||||+||+.|...|+.|.|.
T Consensus       389 vi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs  448 (614)
T KOG0927|consen  389 VIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVS  448 (614)
T ss_pred             eEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccc
Confidence            599999999998653  699999999999999999999999999999999999999999874

>PRK13409 putative ATPase RIL; Provisional

Probab=99.08  E-value=7.7e-11  Score=129.16  Aligned_cols=53  Identities=25%  Similarity=0.243  Sum_probs=48.9

Q ss_pred             eeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       454 nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      +++.+|.+  +..+|+|++ ++++||++||||+||||||||+|+|+|+++|++|+|
T Consensus        78 ~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i  130 (590)
T PRK13409         78 EPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDY  130 (590)
T ss_pred             CceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccc
Confidence            48999963  246999999 999999999999999999999999999999999997

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.07  E-value=1.3e-10  Score=126.01  Aligned_cols=54  Identities=17%  Similarity=0.407  Sum_probs=50.1

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++|++.        .+|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.
T Consensus       268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~  321 (510)
T PRK15439        268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIM  321 (510)
T ss_pred             eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEE
Confidence            599999983        169999999999999999999999999999999999999999983

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.05  E-value=2.2e-10  Score=100.56  Aligned_cols=54  Identities=30%  Similarity=0.503  Sum_probs=49.6

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS  505 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~  505 (510)
                      ..+++||+.+-|++   -.|.|+|+||.+||++-|.||||||||||+.-+.|+.+++
T Consensus         2 ~l~l~nvsl~l~g~---cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~   55 (213)
T COG4136           2 MLCLKNVSLRLPGS---CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQ   55 (213)
T ss_pred             ceeeeeeeecCCCc---eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccC
Confidence            46889999998764   5899999999999999999999999999999999999875

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.03  E-value=1.2e-10  Score=105.02  Aligned_cols=59  Identities=34%  Similarity=0.538  Sum_probs=55.0

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .++.+|+.-+|.+   ..|||+||++.++|++++|+|.|||||||+++++-=+-.|++|+|+
T Consensus         6 ~l~v~dlHK~~G~---~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~   64 (256)
T COG4598           6 ALEVEDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIR   64 (256)
T ss_pred             ceehhHHHhhccc---chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEE
Confidence            6888999999964   4699999999999999999999999999999999999999999984

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.03  E-value=1.8e-10  Score=96.99  Aligned_cols=35  Identities=29%  Similarity=0.310  Sum_probs=33.4

Q ss_pred             CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471          465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL  499 (510)
Q Consensus       465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~  499 (510)
                      .++|+++||++++||.++|+||||||||||++++.
T Consensus         2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820           2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence            46999999999999999999999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.02  E-value=2e-10  Score=127.15  Aligned_cols=63  Identities=22%  Similarity=0.267  Sum_probs=53.7

Q ss_pred             cccEEEEeeeEECCCCC------CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC---CceeC
Q 010471          447 MGHVQFVNISFHYPSRP------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQVC  510 (510)
Q Consensus       447 ~~~I~f~nVsF~Y~~~~------~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~---sG~I~  510 (510)
                      ..+++|.++. +++...      ++++|+|+|++|++||.+||+||||||||||+++|+|..+|.   +|+|.
T Consensus        15 ~~~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~   86 (617)
T TIGR00955        15 AQDGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVL   86 (617)
T ss_pred             cccchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEE
Confidence            3468888888 765332      467999999999999999999999999999999999999885   78873

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.02  E-value=3.8e-11  Score=110.26  Aligned_cols=60  Identities=25%  Similarity=0.520  Sum_probs=55.6

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      +.+..+|+.-+|.+   ++|.+|+||++++||.|++-||+|+||||+..++.||.+|++|+|.
T Consensus         3 ~~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~   62 (243)
T COG1137           3 STLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKIL   62 (243)
T ss_pred             cEEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEE
Confidence            45788999999964   4799999999999999999999999999999999999999999984

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.01  E-value=5e-10  Score=112.64  Aligned_cols=62  Identities=27%  Similarity=0.473  Sum_probs=54.2

Q ss_pred             ccEEEEeeeEECCCC--------CCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSR--------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~--------~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      --++-+||...||-+        +...+.+|+||++++||+++|||+|||||||+-..|+|+.+++ |+|+
T Consensus       275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~  344 (534)
T COG4172         275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIR  344 (534)
T ss_pred             ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEE
Confidence            358889999998832        2234799999999999999999999999999999999999988 9984

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.00  E-value=2.6e-10  Score=111.53  Aligned_cols=43  Identities=51%  Similarity=0.828  Sum_probs=41.8

Q ss_pred             cccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       468 L~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ++|+||+|+.||..-|.|-||||||||++++-|+++|++|+|+
T Consensus        44 v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~il   86 (386)
T COG4175          44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEIL   86 (386)
T ss_pred             eccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEE
Confidence            7899999999999999999999999999999999999999985

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=98.99  E-value=1e-11  Score=137.24  Aligned_cols=169  Identities=14%  Similarity=0.133  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          301 LTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRY-----KIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLL  375 (510)
Q Consensus       301 ~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~  375 (510)
                      ..+...+..++.+.|.+.++.+||..+.|+.....|     .....++.+...+..........+...+.....++++|+
T Consensus        34 ~~~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~~~~~~il~i  113 (644)
T PRK10733         34 YSTFLQEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFISWFPMLLLI  113 (644)
T ss_pred             HHHHHHHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHHHHHHHHHHH
Confidence            334445567788889999999999999988766566     455555555444433222222233334444556778899


Q ss_pred             HHHHHhcCccCHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccCCCccccEEE
Q 010471          376 GGMSIMIGQVSPE---QLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQF  452 (510)
Q Consensus       376 g~~lv~~g~is~G---~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~~~~~~~~I~f  452 (510)
                      |+++++.|+++.|   .+++|..+...+..+ ..+...+..+.....+.+|+.++.+...++.      ..         
T Consensus       114 g~~~v~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~------~~---------  177 (644)
T PRK10733        114 GVWIFFMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEYLREPS------RF---------  177 (644)
T ss_pred             HHHHHHHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHHhhCHH------HH---------
Confidence            9999999999998   777777666666655 4555566666666677788888776532210      00         


Q ss_pred             EeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       453 ~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                                      +++...+|+|  +.|+||+||||||+++.+++-..
T Consensus       178 ----------------~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~  210 (644)
T PRK10733        178 ----------------QKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK  210 (644)
T ss_pred             ----------------HhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHcC
Confidence                            0111255666  99999999999999999998654

>PLN03140 ABC transporter G family member; Provisional

Probab=98.95  E-value=1.1e-09  Score=130.65  Aligned_cols=62  Identities=19%  Similarity=0.394  Sum_probs=54.0

Q ss_pred             cEEEEeeeEECCCC----------CCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC--CCceeC
Q 010471          449 HVQFVNISFHYPSR----------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~----------~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p--~sG~I~  510 (510)
                      .++|+||++..+..          ++..+|+|+|+++++||.+||+||||||||||+++|+|..++  .+|+|.
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~  940 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIR  940 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEE
Confidence            69999999998531          224699999999999999999999999999999999999873  688873

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=98.91  E-value=5.7e-10  Score=102.16  Aligned_cols=59  Identities=20%  Similarity=0.490  Sum_probs=54.6

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      -++.+|||.++++   -.+|+|+||+|.+||.=+|+||+|+||||+++.+.|--+|++|+++
T Consensus         5 iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~   63 (249)
T COG4674           5 ILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVL   63 (249)
T ss_pred             eEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEE
Confidence            4788999999965   4699999999999999999999999999999999999999999873

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=98.90  E-value=1.7e-09  Score=99.69  Aligned_cols=61  Identities=25%  Similarity=0.370  Sum_probs=54.2

Q ss_pred             cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      +..|+++++.|+|+..  .|++-|+|+++|+|..+.+||.+|||||||+|+|.|-.-...|.|
T Consensus        11 ~~aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v   71 (291)
T KOG2355|consen   11 DFAIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVV   71 (291)
T ss_pred             cceEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeE
Confidence            4679999999999865  389999999999999999999999999999999999766555544

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=98.90  E-value=1.1e-09  Score=110.52  Aligned_cols=66  Identities=35%  Similarity=0.667  Sum_probs=55.1

Q ss_pred             CCccccEEEEeeeEECCCC-----------------------CCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471          444 QRLMGHVQFVNISFHYPSR-----------------------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       444 ~~~~~~I~f~nVsF~Y~~~-----------------------~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      +++++.|.|+|++-.|.+.                       -...+|+|+||+|+||+.+||||+|||||||++++++|
T Consensus       352 e~L~~p~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G  431 (593)
T COG2401         352 EKLEGPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILG  431 (593)
T ss_pred             cccCCccccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHH
Confidence            3456789999988776531                       12357999999999999999999999999999999998


Q ss_pred             c--------cCCCCcee
Q 010471          501 L--------YEPSDGQV  509 (510)
Q Consensus       501 ~--------y~p~sG~I  509 (510)
                      +        |+|++|.|
T Consensus       432 ~~~~~~ee~y~p~sg~v  448 (593)
T COG2401         432 AQKGRGEEKYRPDSGKV  448 (593)
T ss_pred             HhhcccccccCCCCCce
Confidence            6        78999976

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.88  E-value=1.8e-09  Score=95.93  Aligned_cols=58  Identities=28%  Similarity=0.454  Sum_probs=53.6

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      .|+++|++|.|..   .++|-||+|+-+.||++.+.||||+|||||++.|-=+--|.+|+.
T Consensus         2 sirv~~in~~yg~---~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l   59 (242)
T COG4161           2 SIQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL   59 (242)
T ss_pred             ceEEccccccccc---chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeE
Confidence            5899999999964   369999999999999999999999999999999999999999974

>PF13748 ABC_membrane_3: ABC transporter transmembrane region

Probab=98.87  E-value=7.6e-06  Score=77.80  Aligned_cols=170  Identities=12%  Similarity=0.114  Sum_probs=118.3

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          126 LIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKR  205 (510)
Q Consensus       126 ~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~~~  205 (510)
                      ..|+|++.+...+.+.+...++.+..|.+.+..+++..+++...    ......+.+...+....|...-..+-.|+-.+
T Consensus         4 I~r~~~~kl~~T~~Lv~aEn~l~l~yPl~~G~AIn~ll~g~~~~----~~~~~~~~l~~~~igaaRR~~DTRvf~rIy~~   79 (237)
T PF13748_consen    4 IARRHRKKLALTFLLVLAENVLLLLYPLFIGFAINALLNGDVWQ----ALMYAALVLLMWAIGAARRIYDTRVFSRIYAE   79 (237)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH----HHHHHHHHHHHHHHhhhhHHHhhHHHHHHHHH
Confidence            45789999999999999999999999999998887654444211    11222333334444455544444333344333


Q ss_pred             HHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 010471          206 LRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLS  285 (510)
Q Consensus       206 lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~l~~  285 (510)
                      +-..+..+-.      -+..+.+.+..|++ =..++-+++...+|.++.+++..++..++++.++.++++.++....++.
T Consensus        80 la~~vi~~qr------~~~~~~S~i~ARv~-lsRE~VdFfE~~lP~lits~vsivga~vmLl~~e~~~g~~~l~~l~~~~  152 (237)
T PF13748_consen   80 LAVPVILSQR------QQGLSVSTIAARVA-LSREFVDFFEQHLPTLITSVVSIVGAAVMLLVFEFWLGLACLLILALFL  152 (237)
T ss_pred             HhHHHHHHHH------HhCCChhHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333322211      45567899999996 5677888999999999999999999999999999999999888877777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 010471          286 IIVSVYGQYQKRASVLTQECN  306 (510)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~  306 (510)
                      ++...|.++..++..+..+..
T Consensus       153 ~i~~~f~~~~~~L~~~LNnrl  173 (237)
T PF13748_consen  153 LILPRFARRNYRLYRRLNNRL  173 (237)
T ss_pred             HHHHHHHHHHHHHHHHHhHHH
Confidence            776666666666655444443

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.87  E-value=1.9e-09  Score=109.10  Aligned_cols=60  Identities=32%  Similarity=0.671  Sum_probs=55.7

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      -+-+.||+|.||+.  .+.+++++|-|.--..||||||+|-|||||++||.|-.+|+.|+.+
T Consensus       586 vLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~R  645 (807)
T KOG0066|consen  586 VLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELR  645 (807)
T ss_pred             eeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhh
Confidence            46788999999975  5899999999999999999999999999999999999999999853

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.87  E-value=1.3e-09  Score=113.59  Aligned_cols=42  Identities=24%  Similarity=0.340  Sum_probs=39.1

Q ss_pred             CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc-ee
Q 010471          466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QV  509 (510)
Q Consensus       466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG-~I  509 (510)
                      .||+|||+++++||.++|+||||||||||++  .|+-+|++| +|
T Consensus        20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I   62 (504)
T TIGR03238        20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEF   62 (504)
T ss_pred             HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEE
Confidence            5899999999999999999999999999999  788888888 56

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.81  E-value=3.1e-09  Score=98.90  Aligned_cols=47  Identities=32%  Similarity=0.557  Sum_probs=44.9

Q ss_pred             CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       464 ~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ++++|+++|++|+.|+.|-++|.+|+|||||++.++|-..|++|+|+
T Consensus        18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~   64 (263)
T COG1101          18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQIL   64 (263)
T ss_pred             HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEE
Confidence            45799999999999999999999999999999999999999999984

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.75  E-value=1.3e-08  Score=111.92  Aligned_cols=64  Identities=31%  Similarity=0.426  Sum_probs=56.6

Q ss_pred             cccEEEEeeeEECCCCC--CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC---CCceeC
Q 010471          447 MGHVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP---SDGQVC  510 (510)
Q Consensus       447 ~~~I~f~nVsF~Y~~~~--~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p---~sG~I~  510 (510)
                      ..++.|+|++..-++.+  .+.+|+|||.+++|||.+||.||||||||||++.|+|--+.   .+|+|+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~il   91 (613)
T KOG0061|consen   23 PVKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEIL   91 (613)
T ss_pred             cceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEE
Confidence            34799999999997652  46799999999999999999999999999999999999975   788874

>PLN03140 ABC transporter G family member; Provisional

Probab=98.72  E-value=7.9e-09  Score=123.42  Aligned_cols=47  Identities=26%  Similarity=0.444  Sum_probs=44.1

Q ss_pred             CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC---CceeC
Q 010471          464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQVC  510 (510)
Q Consensus       464 ~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~---sG~I~  510 (510)
                      +..+|+|+|++|+|||.++|+||||||||||+|+|+|..+|+   +|+|.
T Consensus       177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~  226 (1470)
T PLN03140        177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEIT  226 (1470)
T ss_pred             cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEE
Confidence            345999999999999999999999999999999999999998   99883

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=98.68  E-value=1.3e-08  Score=121.59  Aligned_cols=46  Identities=24%  Similarity=0.314  Sum_probs=42.7

Q ss_pred             CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc----CCCCceeC
Q 010471          465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY----EPSDGQVC  510 (510)
Q Consensus       465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y----~p~sG~I~  510 (510)
                      +++|+|+|+++++||.+||+||||||||||+|+|+|..    .|.+|+|.
T Consensus        74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~  123 (1394)
T TIGR00956        74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVIT  123 (1394)
T ss_pred             ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEE
Confidence            45999999999999999999999999999999999986    57999984

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=98.68  E-value=1.8e-08  Score=101.56  Aligned_cols=56  Identities=34%  Similarity=0.439  Sum_probs=46.0

Q ss_pred             cEEEEeeeEECCC-CCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471          449 HVQFVNISFHYPS-RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP  504 (510)
Q Consensus       449 ~I~f~nVsF~Y~~-~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p  504 (510)
                      -+..+|++..|.. +...+++|||||+|.+||++||||+||||||--++-++|+.+-
T Consensus         6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~   62 (534)
T COG4172           6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPS   62 (534)
T ss_pred             ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCC
Confidence            3566776655531 1246799999999999999999999999999999999999864

>PRK15494 era GTPase Era; Provisional

Probab=98.45  E-value=1.5e-07  Score=96.65  Aligned_cols=56  Identities=20%  Similarity=0.316  Sum_probs=50.5

Q ss_pred             CCccccEEEEeeeEECCCCCCCCccccceEEeeCCC-------EEEEEcCCCCcHHHHHHHHhcc
Q 010471          444 QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE-------VVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       444 ~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge-------~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      +...|+++++||+|+||.  ..++++++++++++|+       +++|||++|+|||||++-|.|-
T Consensus        13 ~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~   75 (339)
T PRK15494         13 EEFKGDTEALAAAVREDA--STGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE   75 (339)
T ss_pred             hhhCCccccccccccCCC--CcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence            446789999999999993  3679999999999999       9999999999999999988774

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.44  E-value=2.3e-07  Score=97.15  Aligned_cols=59  Identities=19%  Similarity=0.211  Sum_probs=53.9

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      +.++.++++-.|...  ..+++.++ +|.+||+++|+|+||||||||++.|+|+.+|+.|.|
T Consensus       138 ~~~~r~~v~~~l~TG--i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv  196 (450)
T PRK06002        138 PAMTRARVETGLRTG--VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVI  196 (450)
T ss_pred             CCeEeecceEEcCCC--cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeee
Confidence            578999999999743  67999996 999999999999999999999999999999999876

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=98.36  E-value=6.3e-07  Score=93.70  Aligned_cols=58  Identities=24%  Similarity=0.437  Sum_probs=52.1

Q ss_pred             ccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC
Q 010471          446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD  506 (510)
Q Consensus       446 ~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s  506 (510)
                      ...+|.++|++++|++   .++++|.+|++.+|++++|+|++||||||+++.+.|=..|..
T Consensus        72 ~s~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p  129 (614)
T KOG0927|consen   72 ISRDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIP  129 (614)
T ss_pred             ccccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCC
Confidence            4468999999999975   579999999999999999999999999999999998776654

>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R

Probab=98.36  E-value=0.0038  Score=62.10  Aligned_cols=228  Identities=11%  Similarity=0.050  Sum_probs=134.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          186 IFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFIN  265 (510)
Q Consensus       186 ~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~  265 (510)
                      ++..+......+...|.-..|-..+.++--+.       ++.=.-.+|+..|+.+....+......++.++++.+..+-+
T Consensus        71 ~~~v~~~ff~shyiFrWR~Am~~yY~~~W~~~-------r~IEGASQRIQEDtmrfa~i~E~Lgv~~i~simtliaFlPi  143 (315)
T PF05992_consen   71 VLAVLNSFFVSHYIFRWRTAMNEYYMSHWPKL-------RHIEGASQRIQEDTMRFAKIMEDLGVSFIRSIMTLIAFLPI  143 (315)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-------ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444555544443       33434578999999999988888888888899888888777


Q ss_pred             HHHHhHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHH
Q 010471          266 LLTLSWPLT-------------LSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKE  332 (510)
Q Consensus       266 l~~~s~~l~-------------li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~  332 (510)
                      ++.+|-.+.             ..+++...+..++..+.+.+...+.-..|+..+...+.   .+-|=.. ......+..
T Consensus       144 L~~lS~~V~~lp~~g~i~~~Lv~~ai~~s~~gt~~l~~vGikLPgLe~~nQkvEAAyRKe---LV~gED~-~~ra~~~tl  219 (315)
T PF05992_consen  144 LWELSSHVSELPFFGEIPHSLVWAAIIWSLFGTILLAFVGIKLPGLEFNNQKVEAAYRKE---LVYGEDD-ANRAQPPTL  219 (315)
T ss_pred             HHHHhccCCcCcccCCCchHHHHHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHHHH---HHhcCcc-cccCCchhH
Confidence            776653322             22233333333334445555544444444444433332   1111111 112233333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          333 LGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLS  412 (510)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~  412 (510)
                      .+.|.+..+.+.+.....    .-++.....-.++..++...+-+-.+..|.+|.|.+........++..++..+.+.++
T Consensus       220 ~eLF~~Vr~Ny~rly~hy----~yfni~~~~y~q~~~i~~~i~l~Psi~ag~iTLG~~~Qi~~aF~~V~~sfq~lv~~W~  295 (315)
T PF05992_consen  220 RELFSNVRRNYFRLYFHY----MYFNIARISYLQFDVIFPYIILIPSIVAGAITLGVLQQISNAFGQVRSSFQYLVNSWT  295 (315)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444444444444433333    2233333333344444444445556778999999999999889999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 010471          413 SLLQSIGATEKVFQLI  428 (510)
Q Consensus       413 ~~~~~~~a~~rl~eil  428 (510)
                      .+.+-+...+|+.++-
T Consensus       296 tivEL~Si~kRL~~FE  311 (315)
T PF05992_consen  296 TIVELRSIYKRLRAFE  311 (315)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999874

meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=98.30  E-value=6e-07  Score=86.07  Aligned_cols=54  Identities=20%  Similarity=0.457  Sum_probs=38.9

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh-cccCCCCce
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLYEPSDGQ  508 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~-g~y~p~sG~  508 (510)
                      .|+++|.. +|.++.   .++ ++ ...+|++++|+|+||||||||+++|. .+|.+..+.
T Consensus         5 ~i~l~nf~-~y~~~~---~i~-~~-~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~   59 (213)
T cd03279           5 KLELKNFG-PFREEQ---VID-FT-GLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRY   59 (213)
T ss_pred             EEEEECCc-CcCCce---EEe-CC-CCCccCEEEEECCCCCCHHHHHHHheeeEecCcccc
Confidence            68999999 875321   000 00 01258999999999999999999999 577666554

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=98.22  E-value=1.3e-06  Score=100.55  Aligned_cols=61  Identities=20%  Similarity=0.404  Sum_probs=56.2

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ..+..+|++..|+.+.  .+.+++|+.+++||+.++-|++||||||++|+|.|...|++|++.
T Consensus       563 ~~~~~~~L~k~y~~~~--~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~  623 (885)
T KOG0059|consen  563 SALVLNNLSKVYGGKD--GAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEAL  623 (885)
T ss_pred             ceEEEcceeeeecchh--hhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEE
Confidence            4689999999998653  299999999999999999999999999999999999999999973

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=98.21  E-value=1.1e-06  Score=92.65  Aligned_cols=44  Identities=27%  Similarity=0.383  Sum_probs=42.1

Q ss_pred             CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      ..+++++ +++++||+++|+|+||+|||||+++|+|+++|+.|.|
T Consensus       146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI  189 (438)
T PRK07721        146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVI  189 (438)
T ss_pred             hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEE
Confidence            5689999 9999999999999999999999999999999999976

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.19  E-value=1.1e-06  Score=92.10  Aligned_cols=43  Identities=28%  Similarity=0.380  Sum_probs=39.8

Q ss_pred             CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471          464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG  507 (510)
Q Consensus       464 ~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG  507 (510)
                      +..+++++ ++|.+||+++|+|+||||||||+++|+|+++|+.+
T Consensus       142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~  184 (434)
T PRK07196        142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVV  184 (434)
T ss_pred             ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeE
Confidence            35689999 99999999999999999999999999999998854

>PRK08149 ATP synthase SpaL; Validated

Probab=98.13  E-value=2e-06  Score=89.99  Aligned_cols=41  Identities=24%  Similarity=0.425  Sum_probs=39.0

Q ss_pred             CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC
Q 010471          465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD  506 (510)
Q Consensus       465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s  506 (510)
                      ..+++++ +++.+||+++|+|+||||||||++.|+|.++++.
T Consensus       139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv  179 (428)
T PRK08149        139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADV  179 (428)
T ss_pred             cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCe
Confidence            4689999 9999999999999999999999999999999886

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.12  E-value=3.5e-06  Score=63.64  Aligned_cols=33  Identities=27%  Similarity=0.490  Sum_probs=26.0

Q ss_pred             cceEEeeC-CCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          470 HVCLTIEA-NEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       470 nisltI~~-Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +-++++.+ |+.+.|.|+||||||||++.+.=..
T Consensus        14 ~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   14 GETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             CeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            34566765 5799999999999999998775433

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.08  E-value=3.1e-06  Score=85.71  Aligned_cols=45  Identities=24%  Similarity=0.343  Sum_probs=41.8

Q ss_pred             CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       464 ~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      +..+++++ +++.+||+++|+|+||+|||||++.|+|..+|+.|.+
T Consensus        56 Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi  100 (326)
T cd01136          56 GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVI  100 (326)
T ss_pred             CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEE
Confidence            35699999 9999999999999999999999999999999988764

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=98.03  E-value=4.3e-06  Score=87.08  Aligned_cols=51  Identities=25%  Similarity=0.402  Sum_probs=47.1

Q ss_pred             cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471          447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      ..+|+.+|.+.+|.+   +.+|.+-++++..|...++||++|+|||||++.|..
T Consensus        78 ~~Di~~~~fdLa~G~---k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~  128 (582)
T KOG0062|consen   78 SKDIHIDNFDLAYGG---KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN  128 (582)
T ss_pred             ccceeeeeeeeeecc---hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence            358999999999964   469999999999999999999999999999999987

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.01  E-value=3.7e-06  Score=88.11  Aligned_cols=59  Identities=19%  Similarity=0.218  Sum_probs=52.3

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      ..++.++++-.+..  +..+++++ ++|.+||+++|+|+||+|||||++.|+|..+|+.|.|
T Consensus       128 ~~~~r~~v~~~l~t--Gi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi  186 (433)
T PRK07594        128 PAMVRQPITQPLMT--GIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186 (433)
T ss_pred             CceeccCHhheeCC--Cceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEE
Confidence            35777888888864  36799999 9999999999999999999999999999999998765

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=97.98  E-value=6.5e-06  Score=94.05  Aligned_cols=40  Identities=30%  Similarity=0.443  Sum_probs=36.2

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHH
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVN  496 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~k  496 (510)
                      .++++|++.        ..|+|+|++||+||.++|+|+||||||||++
T Consensus       612 ~l~l~~~~~--------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~  651 (924)
T TIGR00630       612 FLTLKGARE--------NNLKNITVSIPLGLFTCITGVSGSGKSTLIN  651 (924)
T ss_pred             eEEEEeCcc--------CCcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence            589999862        2599999999999999999999999999997

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.98  E-value=6.6e-06  Score=76.53  Aligned_cols=39  Identities=31%  Similarity=0.505  Sum_probs=36.4

Q ss_pred             CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      ..+.+++|++...||+-++||+||||||-++|.++|...
T Consensus        20 vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~k   58 (330)
T COG4170          20 VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNK   58 (330)
T ss_pred             eEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccc
Confidence            569999999999999999999999999999999998754

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=97.98  E-value=5.3e-06  Score=78.91  Aligned_cols=35  Identities=31%  Similarity=0.340  Sum_probs=33.4

Q ss_pred             CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471          465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL  499 (510)
Q Consensus       465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~  499 (510)
                      +.+.+|+++++++|+.++|+|||||||||+++.+.
T Consensus        16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~   50 (204)
T cd03282          16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIA   50 (204)
T ss_pred             cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHH
Confidence            57999999999999999999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK09862 putative ATP-dependent protease; Provisional

Probab=97.93  E-value=7.4e-06  Score=87.66  Aligned_cols=55  Identities=13%  Similarity=0.109  Sum_probs=49.6

Q ss_pred             EEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          452 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       452 f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      ++|++..|..   ..+++++++.+.+|+.++|+|++|||||||++.|.|+.+|.+|++
T Consensus       187 ~~d~~~v~Gq---~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e  241 (506)
T PRK09862        187 QHDLSDVIGQ---EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEE  241 (506)
T ss_pred             ccCeEEEECc---HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcE
Confidence            4588888853   359999999999999999999999999999999999999999975

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=97.92  E-value=9e-06  Score=85.10  Aligned_cols=44  Identities=27%  Similarity=0.389  Sum_probs=41.7

Q ss_pred             CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      ..+++++ +++.+||+++|+|+||+|||||+++|+|..+|+.|.|
T Consensus       125 i~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi  168 (413)
T TIGR03497       125 IKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVI  168 (413)
T ss_pred             ceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEE
Confidence            5699999 9999999999999999999999999999999998865

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=97.91  E-value=7.9e-06  Score=85.98  Aligned_cols=45  Identities=22%  Similarity=0.316  Sum_probs=41.9

Q ss_pred             CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       464 ~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      +..+++++ +++.+||+++|+|+||+|||||++.|+|..+|+.|.+
T Consensus       132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi  176 (422)
T TIGR02546       132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVI  176 (422)
T ss_pred             Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEE
Confidence            35699999 9999999999999999999999999999999998765

>PRK09099 type III secretion system ATPase; Provisional

Probab=97.91  E-value=1.1e-05  Score=84.95  Aligned_cols=45  Identities=22%  Similarity=0.350  Sum_probs=41.9

Q ss_pred             CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       464 ~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      +..+++++ +++.+||+++|+|+||+|||||++.++|..+++.|.|
T Consensus       150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi  194 (441)
T PRK09099        150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVI  194 (441)
T ss_pred             Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEE
Confidence            35689999 9999999999999999999999999999999988765

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=97.89  E-value=7.1e-06  Score=78.99  Aligned_cols=44  Identities=20%  Similarity=0.234  Sum_probs=40.0

Q ss_pred             CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhc-ccCCCCce
Q 010471          465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR-LYEPSDGQ  508 (510)
Q Consensus       465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g-~y~p~sG~  508 (510)
                      +.+.+|+++++.+|++++|.||||+||||+++.+.+ -+.++.|.
T Consensus        18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~   62 (222)
T cd03287          18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGS   62 (222)
T ss_pred             CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCC
Confidence            479999999999999999999999999999999999 66677774

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=97.89  E-value=6.8e-06  Score=83.32  Aligned_cols=39  Identities=28%  Similarity=0.445  Sum_probs=35.7

Q ss_pred             ceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       471 isltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      +++.+++|+.++|+|++||||||+++.|+++++|..|.+
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv  175 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERII  175 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEE
Confidence            557788999999999999999999999999999988854

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=97.89  E-value=8.1e-06  Score=86.14  Aligned_cols=44  Identities=27%  Similarity=0.400  Sum_probs=41.1

Q ss_pred             CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      ..+++++ ++|.+||+++|+|+||+|||||++.|+|..+|+.|.|
T Consensus       151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi  194 (440)
T TIGR01026       151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVI  194 (440)
T ss_pred             eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEE
Confidence            5699999 9999999999999999999999999999999987754

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=97.88  E-value=1.9e-05  Score=82.81  Aligned_cols=58  Identities=19%  Similarity=0.287  Sum_probs=50.1

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      .++-++++-.|..  +..+++++ +++.+||+++|+|+||+|||||++.|+|..+|+.|.|
T Consensus       130 ~~~r~~i~~~l~T--GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI  187 (432)
T PRK06793        130 AFEREEITDVFET--GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVI  187 (432)
T ss_pred             chheechhhccCC--CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEE
Confidence            4666777777754  35688885 9999999999999999999999999999999999876

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=97.87  E-value=1.1e-05  Score=96.94  Aligned_cols=53  Identities=28%  Similarity=0.417  Sum_probs=43.0

Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      .+.+++++.|..   .+.|+|+|++|++||.++|+|+||||||||+..+  +|.  +|++
T Consensus       936 l~~~~i~i~~~~---~~~lk~isl~i~~gei~~itG~nGsGKStL~~~~--L~~--~G~~  988 (1809)
T PRK00635        936 PVPADITIKNAY---QHNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI--LYA--AGNI  988 (1809)
T ss_pred             cccceEEEeccc---cccccceeEEecCCcEEEEECCCCCChhHHHHHH--HHh--hccE
Confidence            446678888742   2479999999999999999999999999988766  554  6765

>PLN02796 D-glycerate 3-kinase

Probab=97.87  E-value=4.1e-06  Score=84.94  Aligned_cols=40  Identities=20%  Similarity=0.284  Sum_probs=36.2

Q ss_pred             CccccceEEe---eCCCE-----EEEEcCCCCcHHHHHHHHhcccCCC
Q 010471          466 PILNHVCLTI---EANEV-----VAIVGLSGSGKSTFVNLLLRLYEPS  505 (510)
Q Consensus       466 ~vL~nisltI---~~Ge~-----vAIVG~SGSGKSTL~kLL~g~y~p~  505 (510)
                      .++++++..+   ++|+.     +||+|+||||||||++.|.+++++.
T Consensus        80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~  127 (347)
T PLN02796         80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNAT  127 (347)
T ss_pred             HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhccc
Confidence            5788898888   67887     9999999999999999999999875

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=97.86  E-value=1.4e-05  Score=76.01  Aligned_cols=32  Identities=22%  Similarity=0.365  Sum_probs=27.0

Q ss_pred             CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471          466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL  499 (510)
Q Consensus       466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~  499 (510)
                      .+..|  +++.+|++++|+|+|||||||+++.+.
T Consensus        19 ~~~~~--~~l~~~~~~~l~G~Ng~GKStll~~i~   50 (202)
T cd03243          19 FVPND--INLGSGRLLLITGPNMGGKSTYLRSIG   50 (202)
T ss_pred             eEeee--EEEcCCeEEEEECCCCCccHHHHHHHH
Confidence            44554  455589999999999999999999998

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.86  E-value=1.6e-05  Score=91.36  Aligned_cols=54  Identities=26%  Similarity=0.442  Sum_probs=43.6

Q ss_pred             cEEEEeeeEECCC-CCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          449 HVQFVNISFHYPS-RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       449 ~I~f~nVsF~Y~~-~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      -...+|+.|.=+. ++.+.+|+|||=-++||..+||+|+||||||||++.|+|=-
T Consensus       787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~  841 (1391)
T KOG0065|consen  787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRK  841 (1391)
T ss_pred             eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCc
Confidence            3455566665432 23567999999999999999999999999999999998743

>PRK05688 fliI flagellum-specific ATP synthase; Validated

Probab=97.85  E-value=1.4e-05  Score=84.08  Aligned_cols=41  Identities=22%  Similarity=0.430  Sum_probs=38.4

Q ss_pred             CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471          464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS  505 (510)
Q Consensus       464 ~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~  505 (510)
                      +..+++++ ++|.+||+++|+|+||+|||||+++|+|+.+|+
T Consensus       155 Gi~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~d  195 (451)
T PRK05688        155 GIRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEAD  195 (451)
T ss_pred             ceeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            45689999 999999999999999999999999999999886

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=97.83  E-value=2e-05  Score=94.60  Aligned_cols=40  Identities=23%  Similarity=0.470  Sum_probs=36.1

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHH
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVN  496 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~k  496 (510)
                      .++++|++.        ..|+|+|++||+||.++|+|+||||||||++
T Consensus       600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~  639 (1809)
T PRK00635        600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLIN  639 (1809)
T ss_pred             eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence            588888751        3799999999999999999999999999999

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=97.79  E-value=1.6e-05  Score=83.25  Aligned_cols=44  Identities=25%  Similarity=0.357  Sum_probs=40.1

Q ss_pred             CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      ..+++ .++++.+||+++|+|+||+|||||++.|+|..+|+.|.|
T Consensus       128 i~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi  171 (418)
T TIGR03498       128 VRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVI  171 (418)
T ss_pred             cEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEE
Confidence            45665 699999999999999999999999999999999998865

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK08972 fliI flagellum-specific ATP synthase; Validated

Probab=97.79  E-value=2e-05  Score=82.35  Aligned_cols=40  Identities=25%  Similarity=0.385  Sum_probs=36.5

Q ss_pred             CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471          465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS  505 (510)
Q Consensus       465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~  505 (510)
                      ..+++.+ ++|.+||+++|+|+||+|||||++.|+|..+++
T Consensus       150 i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d  189 (444)
T PRK08972        150 VRAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD  189 (444)
T ss_pred             ceeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCCCC
Confidence            4578877 999999999999999999999999999988774

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=97.78  E-value=2.9e-05  Score=81.28  Aligned_cols=57  Identities=26%  Similarity=0.289  Sum_probs=47.4

Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      .+-+.++-.|..  +..+++.+ +++.+||+++|+|+||+|||||++.|+|+.+|+.|.|
T Consensus       112 ~~R~~~~~~~~t--Gi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi  168 (411)
T TIGR03496       112 LKRAPIDEPLDV--GVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVV  168 (411)
T ss_pred             HhccCcceEeee--eEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEE
Confidence            444455666643  35799999 9999999999999999999999999999999986654

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK01889 GTPase RsgA; Reviewed

Probab=97.77  E-value=9.2e-06  Score=83.92  Aligned_cols=43  Identities=37%  Similarity=0.442  Sum_probs=39.4

Q ss_pred             ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      -++.+.-.+++|++++|||+||+|||||++.|+|...|..|+|
T Consensus       184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i  226 (356)
T PRK01889        184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAV  226 (356)
T ss_pred             cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeE
Confidence            3666777789999999999999999999999999999999987

>PRK08472 fliI flagellum-specific ATP synthase; Validated

Probab=97.76  E-value=2e-05  Score=82.68  Aligned_cols=44  Identities=25%  Similarity=0.304  Sum_probs=40.2

Q ss_pred             CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      ..+++++ +++.+||+++|+|+||+|||||++.|++..+++.+.|
T Consensus       145 i~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi  188 (434)
T PRK08472        145 VKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVV  188 (434)
T ss_pred             hHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEE
Confidence            4589999 9999999999999999999999999999988876654

>PRK05922 type III secretion system ATPase; Validated

Probab=97.74  E-value=3.1e-05  Score=81.19  Aligned_cols=44  Identities=16%  Similarity=0.335  Sum_probs=40.4

Q ss_pred             CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      ..+++.+ +++.+||+++|+|+||+|||||++.|+|..+++.|.+
T Consensus       145 Ir~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi  188 (434)
T PRK05922        145 IKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVI  188 (434)
T ss_pred             ceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEE
Confidence            4578876 9999999999999999999999999999999998865

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=97.73  E-value=3e-05  Score=88.97  Aligned_cols=43  Identities=30%  Similarity=0.416  Sum_probs=37.3

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL  499 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~  499 (510)
                      .|+++|++.        ..|+|+|++||+||.++|+|.||||||||++-++
T Consensus       614 ~L~v~~l~~--------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l  656 (943)
T PRK00349        614 FLKLKGARE--------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETL  656 (943)
T ss_pred             eEEecCCcc--------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHH
Confidence            588888851        2599999999999999999999999999997653

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.72  E-value=1.7e-05  Score=78.53  Aligned_cols=55  Identities=20%  Similarity=0.309  Sum_probs=38.1

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEee-------CCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIE-------ANEVVAIVGLSGSGKSTFVNLLLRLYEP  504 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~-------~Ge~vAIVG~SGSGKSTL~kLL~g~y~p  504 (510)
                      .|.|+++++.|+.- -+.+++|++++++       +|++++++|++|+||||+++.|++.+..
T Consensus        40 ~i~f~~~~~~~~~v-l~~v~~~l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~~~l~~~l~~  101 (270)
T PRK06731         40 KVKFENATMITEEV-IEYILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHG  101 (270)
T ss_pred             eEEecCCCccccHH-HHHHhcccEEeeCCcccccCCCCEEEEECCCCCcHHHHHHHHHHHHHH
Confidence            45555555555321 1234566666665       5699999999999999999999887643

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=97.72  E-value=1.9e-05  Score=76.52  Aligned_cols=32  Identities=31%  Similarity=0.489  Sum_probs=29.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcccCCCCce
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ  508 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~  508 (510)
                      +...+||.|+||||||||++.|.+...+++|.
T Consensus        32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~   63 (229)
T PRK09270         32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGEL   63 (229)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence            45799999999999999999999999999987

>PRK06936 type III secretion system ATPase; Provisional

Probab=97.70  E-value=3.4e-05  Score=80.88  Aligned_cols=41  Identities=29%  Similarity=0.437  Sum_probs=38.1

Q ss_pred             CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471          464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS  505 (510)
Q Consensus       464 ~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~  505 (510)
                      +..+++++ +++.+||+++|+|+||||||||++.|+|..+++
T Consensus       149 Gi~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~d  189 (439)
T PRK06936        149 GVRVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVD  189 (439)
T ss_pred             Ccceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCCCC
Confidence            35689999 999999999999999999999999999998875

>PRK06820 type III secretion system ATPase; Validated

Probab=97.68  E-value=4e-05  Score=80.59  Aligned_cols=43  Identities=19%  Similarity=0.283  Sum_probs=39.8

Q ss_pred             CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471          464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG  507 (510)
Q Consensus       464 ~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG  507 (510)
                      +..+++++ +++.+||+++|+|+||+|||||++.+++..+|+.+
T Consensus       150 Gi~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv~  192 (440)
T PRK06820        150 GIRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVM  192 (440)
T ss_pred             CCceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCCCCEE
Confidence            36799999 99999999999999999999999999999988764

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.66  E-value=4.1e-05  Score=69.59  Aligned_cols=33  Identities=30%  Similarity=0.541  Sum_probs=24.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      +|++++++|+||+|||||+|.|.+-.+..-|+|
T Consensus        34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~i   66 (161)
T PF03193_consen   34 KGKTSVLLGQSGVGKSSLINALLPEAKQKTGEI   66 (161)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHTSS----S--
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhhcchhhhhh
Confidence            469999999999999999999998776666665

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=97.65  E-value=5.9e-05  Score=77.77  Aligned_cols=53  Identities=34%  Similarity=0.609  Sum_probs=42.5

Q ss_pred             eeeEECCCCCCCCccccceEEee-----CCCEEEEEcCCCCcHHHHHHHHhcccCCCCce
Q 010471          454 NISFHYPSRPTVPILNHVCLTIE-----ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ  508 (510)
Q Consensus       454 nVsF~Y~~~~~~~vL~nisltI~-----~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~  508 (510)
                      +.-++|++-  ..-+.|+.|++.     .||+++++||+|-||||++|+|+|..+|++|+
T Consensus       340 ~~lv~y~~~--~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~  397 (591)
T COG1245         340 DTLVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS  397 (591)
T ss_pred             ceeeecchh--eeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC
Confidence            445567642  345667777765     56799999999999999999999999999995

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=97.63  E-value=4.4e-05  Score=75.64  Aligned_cols=31  Identities=23%  Similarity=0.265  Sum_probs=29.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      +.++|+|++|||||||++.|+|++.|++|+|
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i  142 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGISQL  142 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCCceE
Confidence            6899999999999999999999999999986

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PRK00098 GTPase RsgA; Reviewed

Probab=97.62  E-value=4.6e-05  Score=76.89  Aligned_cols=33  Identities=39%  Similarity=0.554  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      +|++++++|+||+|||||++.|+|...+..|+|
T Consensus       163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v  195 (298)
T PRK00098        163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEI  195 (298)
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcCCCCcce
Confidence            599999999999999999999999999998887

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=97.61  E-value=5.1e-05  Score=73.20  Aligned_cols=34  Identities=32%  Similarity=0.400  Sum_probs=32.1

Q ss_pred             CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHH
Q 010471          465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL  498 (510)
Q Consensus       465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL  498 (510)
                      +.+.+|+++++++|+.++|+|||||||||+++.+
T Consensus        17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i   50 (222)
T cd03285          17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQI   50 (222)
T ss_pred             CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHH
Confidence            5799999999999999999999999999999986

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=97.60  E-value=3.9e-05  Score=80.53  Aligned_cols=40  Identities=23%  Similarity=0.385  Sum_probs=35.9

Q ss_pred             CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC
Q 010471          466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD  506 (510)
Q Consensus       466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s  506 (510)
                      .+++.+ +++.+||+++|+|+||+|||||++.|+|+.+|+.
T Consensus       164 raID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~  203 (455)
T PRK07960        164 RAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADV  203 (455)
T ss_pred             eeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCE
Confidence            355555 9999999999999999999999999999999985

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.59  E-value=2.8e-05  Score=82.63  Aligned_cols=41  Identities=24%  Similarity=0.291  Sum_probs=34.2

Q ss_pred             cccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCce
Q 010471          468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ  508 (510)
Q Consensus       468 L~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~  508 (510)
                      +++.+..+++|+++++||++|+||||.+..|++.|.+..|.
T Consensus       246 ~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~  286 (484)
T PRK06995        246 LDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA  286 (484)
T ss_pred             ccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC
Confidence            33444556689999999999999999999999999887764

>PRK06315 type III secretion system ATPase; Provisional

Probab=97.58  E-value=4.3e-05  Score=80.37  Aligned_cols=41  Identities=27%  Similarity=0.462  Sum_probs=36.4

Q ss_pred             CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC
Q 010471          465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD  506 (510)
Q Consensus       465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s  506 (510)
                      ..+++++ ++|.+||+++|+|+||||||||++.|+|..++.+
T Consensus       152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~  192 (442)
T PRK06315        152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEAD  192 (442)
T ss_pred             EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCC
Confidence            4478888 9999999999999999999999999999885433

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.57  E-value=4.2e-05  Score=76.47  Aligned_cols=31  Identities=32%  Similarity=0.488  Sum_probs=27.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhcccC--CCCcee
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRLYE--PSDGQV  509 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~y~--p~sG~I  509 (510)
                      .++||.|+|||||||+++.|.++..  |.+|+|
T Consensus        63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V   95 (290)
T TIGR00554        63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKV   95 (290)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCce
Confidence            4899999999999999999999988  777764

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=97.56  E-value=5.5e-05  Score=81.10  Aligned_cols=44  Identities=27%  Similarity=0.419  Sum_probs=38.2

Q ss_pred             CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh---cccCCCCcee
Q 010471          465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL---RLYEPSDGQV  509 (510)
Q Consensus       465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~---g~y~p~sG~I  509 (510)
                      .-.++|+-+.+ +|..+||.|+|||||||+++.|+   |+.-.+.|.+
T Consensus       272 ~RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~  318 (512)
T PRK13477        272 TRLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAM  318 (512)
T ss_pred             eEEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCce
Confidence            45899999988 88999999999999999999999   6666666764

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=97.54  E-value=8.1e-05  Score=77.82  Aligned_cols=61  Identities=25%  Similarity=0.415  Sum_probs=55.5

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      ..+++.+|+|.|+.++- +.+.++++.+..-+++++||++|+||||+.|++.+-.+|..|.+
T Consensus       361 p~l~i~~V~f~y~p~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~  421 (582)
T KOG0062|consen  361 PNLRISYVAFEYTPSEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIV  421 (582)
T ss_pred             CeeEEEeeeccCCCcch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCccccee
Confidence            46999999999975432 79999999999999999999999999999999999999999865

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=97.54  E-value=5.4e-05  Score=72.75  Aligned_cols=35  Identities=26%  Similarity=0.301  Sum_probs=31.8

Q ss_pred             CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471          465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      ..|.+|+++++++ +.++|+|||||||||+++.+.+
T Consensus        18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~   52 (216)
T cd03284          18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVAL   52 (216)
T ss_pred             ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHH
Confidence            4689999999988 9999999999999999999863

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=97.51  E-value=3.8e-05  Score=78.37  Aligned_cols=36  Identities=33%  Similarity=0.509  Sum_probs=32.5

Q ss_pred             ccceEEeeC--CCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471          469 NHVCLTIEA--NEVVAIVGLSGSGKSTFVNLLLRLYEP  504 (510)
Q Consensus       469 ~nisltI~~--Ge~vAIVG~SGSGKSTL~kLL~g~y~p  504 (510)
                      ++|+..+++  +++++|+|+||||||||++.|++.|.+
T Consensus       151 ~~i~~~~~~~~~~~~~~~G~~~~gkstl~~~l~~~~~~  188 (325)
T TIGR01526       151 KHIPREVRPFFVKTVAILGGESTGKSTLVNKLAAVFNT  188 (325)
T ss_pred             HhCCHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence            357788889  999999999999999999999999865

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.48  E-value=8.2e-05  Score=74.67  Aligned_cols=41  Identities=32%  Similarity=0.516  Sum_probs=34.9

Q ss_pred             cccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       468 L~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      ++++.-.++ |++++++|+||+|||||++.|+|...+..|+|
T Consensus       152 i~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v  192 (287)
T cd01854         152 LDELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEI  192 (287)
T ss_pred             HHHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccce
Confidence            344555555 59999999999999999999999999998876

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=97.45  E-value=0.00057  Score=71.49  Aligned_cols=62  Identities=26%  Similarity=0.477  Sum_probs=54.8

Q ss_pred             cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      +.-++++|++-.=. + +.+.++||||++.+||+++|.|-+|-|-+-|+.+|+|+..|.+|+|+
T Consensus       255 ~~vL~V~~L~v~~~-~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~  316 (501)
T COG3845         255 EVVLEVEDLSVKDR-R-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRIL  316 (501)
T ss_pred             CeEEEEeeeEeecC-C-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEE
Confidence            34588899998753 2 35789999999999999999999999999999999999999999984

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.44  E-value=6.2e-05  Score=83.77  Aligned_cols=41  Identities=27%  Similarity=0.357  Sum_probs=35.9

Q ss_pred             ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471          467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG  507 (510)
Q Consensus       467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG  507 (510)
                      ++++.++.+++|+++++|||+|+||||.+.-|++.|...+|
T Consensus       174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G  214 (767)
T PRK14723        174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREG  214 (767)
T ss_pred             hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcC
Confidence            56667777888999999999999999999999999877766

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=97.41  E-value=3.1e-05  Score=76.65  Aligned_cols=49  Identities=27%  Similarity=0.480  Sum_probs=41.0

Q ss_pred             EECCCCCCCCccccceEEeeCCC-EEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471          457 FHYPSRPTVPILNHVCLTIEANE-VVAIVGLSGSGKSTFVNLLLRLYEPS  505 (510)
Q Consensus       457 F~Y~~~~~~~vL~nisltI~~Ge-~vAIVG~SGSGKSTL~kLL~g~y~p~  505 (510)
                      |-|++...+.+++.++..+++|+ .+.|+|++||||||+++.+.+.+++.
T Consensus        21 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~   70 (269)
T TIGR03015        21 FFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQE   70 (269)
T ss_pred             HhCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCC
Confidence            55766555569999999888877 89999999999999999999887753

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>TIGR01069 mutS2 MutS2 family protein

Probab=97.38  E-value=0.00018  Score=81.35  Aligned_cols=52  Identities=27%  Similarity=0.407  Sum_probs=40.3

Q ss_pred             ccEEEEeeeEECCCCCCCCcccc-----ceEEeeCC-CEEEEEcCCCCcHHHHHHHHhcc-cCCCCc
Q 010471          448 GHVQFVNISFHYPSRPTVPILNH-----VCLTIEAN-EVVAIVGLSGSGKSTFVNLLLRL-YEPSDG  507 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~n-----isltI~~G-e~vAIVG~SGSGKSTL~kLL~g~-y~p~sG  507 (510)
                      +.|.++|+..        |++++     +|+++.+| +.++|+||||+||||++|.+.+. +-++.|
T Consensus       294 ~~i~l~~~rh--------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G  352 (771)
T TIGR01069       294 GKIILENARH--------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG  352 (771)
T ss_pred             CCEEEccccC--------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC
Confidence            3577776553        34433     78888888 89999999999999999999988 555555

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PRK09183 transposase/IS protein; Provisional

Probab=97.37  E-value=6.1e-05  Score=74.43  Aligned_cols=50  Identities=26%  Similarity=0.398  Sum_probs=37.6

Q ss_pred             EEEeeeEECCCCCCC---CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          451 QFVNISFHYPSRPTV---PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       451 ~f~nVsF~Y~~~~~~---~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      .+++..|+++...++   ..|.++++ +++|+.+.|+||+|+|||+|+..|...
T Consensus        73 ~l~~fd~~~~~~~~~~~i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~  125 (259)
T PRK09183         73 TFEEYDFTFATGAPQKQLQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYE  125 (259)
T ss_pred             cHhhcccccCCCCCHHHHHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            344556666432222   24778888 999999999999999999999999654

>PRK08927 fliI flagellum-specific ATP synthase; Validated

Probab=97.37  E-value=0.00017  Score=75.76  Aligned_cols=37  Identities=27%  Similarity=0.315  Sum_probs=34.4

Q ss_pred             cceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC
Q 010471          470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD  506 (510)
Q Consensus       470 nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s  506 (510)
                      |.-+++.+||+++|+|+||+|||||++.|.+..+|+.
T Consensus       150 D~l~~i~~Gqri~I~G~sG~GKTtLL~~I~~~~~~d~  186 (442)
T PRK08927        150 NTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNADADV  186 (442)
T ss_pred             eeeeEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCE
Confidence            5679999999999999999999999999999998863

>TIGR00368 Mg chelatase-related protein

Probab=97.30  E-value=0.00012  Score=78.67  Aligned_cols=45  Identities=16%  Similarity=0.242  Sum_probs=42.3

Q ss_pred             CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      ..+.+++++.+..|+.+.++|++||||||+++.+.++++|.+|++
T Consensus       198 ~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~  242 (499)
T TIGR00368       198 QHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEE  242 (499)
T ss_pred             HHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcE
Confidence            358999999999999999999999999999999999999998874

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.30  E-value=0.00013  Score=74.21  Aligned_cols=34  Identities=29%  Similarity=0.495  Sum_probs=31.2

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      ++|+++++|||+||||||++.-|++.+.+..|+|
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V  145 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKV  145 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeE
Confidence            4789999999999999999999999999887776

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=97.30  E-value=0.0002  Score=67.89  Aligned_cols=29  Identities=28%  Similarity=0.353  Sum_probs=25.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHh--------cccCCCCc
Q 010471          479 EVVAIVGLSGSGKSTFVNLLL--------RLYEPSDG  507 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~--------g~y~p~sG  507 (510)
                      ++++|+||+|||||||++.+.        |++-|...
T Consensus        29 ~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~   65 (200)
T cd03280          29 RVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAE   65 (200)
T ss_pred             eEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccc
Confidence            579999999999999999999        88877654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=97.30  E-value=0.00019  Score=74.10  Aligned_cols=28  Identities=36%  Similarity=0.567  Sum_probs=26.5

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      ++|..++|+||+||||||+++.|++++.
T Consensus       132 ~~~glilI~GpTGSGKTTtL~aLl~~i~  159 (358)
T TIGR02524       132 PQEGIVFITGATGSGKSTLLAAIIRELA  159 (358)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4899999999999999999999999985

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=97.28  E-value=0.45  Score=52.71  Aligned_cols=34  Identities=15%  Similarity=0.136  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010471          182 VTSGIFSGLRSGCFSIANIVLVKRLRETLYSALL  215 (510)
Q Consensus       182 ~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll  215 (510)
                      ++..++..+..+.......++..++|.++-+.+.
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~   96 (588)
T PRK13657         63 AGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYF   96 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444455555555666666777776655443

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.28  E-value=0.00012  Score=75.47  Aligned_cols=40  Identities=28%  Similarity=0.352  Sum_probs=34.6

Q ss_pred             CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471          465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP  504 (510)
Q Consensus       465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p  504 (510)
                      .+++++.+..+++|+++++|||+|+||||++.-|++.+..
T Consensus       124 l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~  163 (374)
T PRK14722        124 LPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVM  163 (374)
T ss_pred             chhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4578888889999999999999999999999888876543

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.23  E-value=0.00028  Score=62.12  Aligned_cols=32  Identities=31%  Similarity=0.375  Sum_probs=28.4

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS  505 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~  505 (510)
                      .+++|+.++|.|+.||||||++|.+++-....
T Consensus        18 ~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~   49 (133)
T TIGR00150        18 PLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ   49 (133)
T ss_pred             hCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            45799999999999999999999999887643

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.22  E-value=0.00021  Score=74.91  Aligned_cols=27  Identities=33%  Similarity=0.396  Sum_probs=24.8

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      ++|+++++||++|+||||+++.|++.|
T Consensus       189 ~~g~vi~lvGpnG~GKTTtlakLA~~~  215 (420)
T PRK14721        189 EQGGVYALIGPTGVGKTTTTAKLAARA  215 (420)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            589999999999999999999998864

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.22  E-value=0.00016  Score=73.14  Aligned_cols=39  Identities=26%  Similarity=0.324  Sum_probs=35.4

Q ss_pred             CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471          466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP  504 (510)
Q Consensus       466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p  504 (510)
                      .+|++++.+.++++.++|+|++||||||+++.|.+.+..
T Consensus        22 ~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~   60 (300)
T TIGR00750        22 QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRR   60 (300)
T ss_pred             HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            489999999999999999999999999999998887643

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=97.16  E-value=0.00027  Score=77.74  Aligned_cols=40  Identities=28%  Similarity=0.431  Sum_probs=33.9

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHH
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVN  496 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~k  496 (510)
                      .+++++++        ..=|+||+.+||=|..|+|.|-||||||||++
T Consensus       606 ~L~l~gA~--------~nNLkni~v~iPLg~~t~VTGVSGSGKSTLIn  645 (935)
T COG0178         606 WLELKGAR--------RNNLKNIDVEIPLGVFTCVTGVSGSGKSTLIN  645 (935)
T ss_pred             eEEEeccc--------ccCcccceeecccccEEEEEecCCCCHHHhHH
Confidence            47776543        23599999999999999999999999999993

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=97.15  E-value=0.0003  Score=72.09  Aligned_cols=36  Identities=22%  Similarity=0.423  Sum_probs=32.3

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      -+++|..+.|+|++||||||+++.|+++.+++++-|
T Consensus       158 ~v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~riv  193 (344)
T PRK13851        158 CVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLI  193 (344)
T ss_pred             HHHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEE
Confidence            367899999999999999999999999999987654

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=97.09  E-value=0.00048  Score=66.19  Aligned_cols=37  Identities=22%  Similarity=0.246  Sum_probs=33.8

Q ss_pred             CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      ..|.+|+++++++|++++|.||+|+||||+++.+...
T Consensus        17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~   53 (218)
T cd03286          17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLA   53 (218)
T ss_pred             CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHH
Confidence            4799999999999999999999999999999887643

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PLN02165 adenylate isopentenyltransferase

Probab=97.08  E-value=0.0004  Score=70.37  Aligned_cols=28  Identities=36%  Similarity=0.475  Sum_probs=25.8

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      ++|+.++|+||+|||||||+..|++.+.
T Consensus        41 ~~g~iivIiGPTGSGKStLA~~LA~~l~   68 (334)
T PLN02165         41 CKDKVVVIMGATGSGKSRLSVDLATRFP   68 (334)
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence            4789999999999999999999999875

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=97.04  E-value=0.00039  Score=72.04  Aligned_cols=27  Identities=30%  Similarity=0.391  Sum_probs=24.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRLYEPS  505 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~y~p~  505 (510)
                      =+|||.|+||||||||++.|.++.++.
T Consensus       213 lIIGIsG~qGSGKSTLa~~L~~lL~~~  239 (460)
T PLN03046        213 LVIGFSAPQGCGKTTLVFALDYLFRVT  239 (460)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhccc
Confidence            468999999999999999999988765

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.99  E-value=0.00051  Score=53.35  Aligned_cols=23  Identities=48%  Similarity=0.592  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccc
Q 010471          480 VVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      .++|.|++||||||+++.|...+
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999998874

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=96.97  E-value=0.00055  Score=73.86  Aligned_cols=30  Identities=33%  Similarity=0.595  Sum_probs=26.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      -.|||.|+||||||||++.|.++. |..|.|
T Consensus        66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvI   95 (656)
T PLN02318         66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVI   95 (656)
T ss_pred             EEEEEECCCCCcHHHHHHHHHhhC-CCcEEE
Confidence            489999999999999999999997 555554

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=96.87  E-value=0.00065  Score=65.10  Aligned_cols=34  Identities=21%  Similarity=0.293  Sum_probs=27.2

Q ss_pred             CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471          466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL  499 (510)
Q Consensus       466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~  499 (510)
                      .|-+|++++=..+.+++|+||+|+||||++|.+.
T Consensus        17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~   50 (213)
T cd03281          17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVA   50 (213)
T ss_pred             eEcceEEecCCCceEEEEECCCCCChHHHHHHHH
Confidence            5667776652223899999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK12288 GTPase RsgA; Reviewed

Probab=96.87  E-value=0.00061  Score=70.10  Aligned_cols=33  Identities=39%  Similarity=0.507  Sum_probs=28.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      .+++++|||+||.|||||+|.|++-....-|+|
T Consensus       204 ~~ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~i  236 (347)
T PRK12288        204 TGRISIFVGQSGVGKSSLINALLPEAEILVGDV  236 (347)
T ss_pred             hhCCEEEECCCCCCHHHHHHHhccccceeeccc
Confidence            367899999999999999999998877766665

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=96.86  E-value=0.00083  Score=65.82  Aligned_cols=33  Identities=27%  Similarity=0.404  Sum_probs=29.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      .++.++++|+||.|||||++.|++-.....|+|
T Consensus       119 ~~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i  151 (245)
T TIGR00157       119 QNRISVFAGQSGVGKSSLINALDPSVKQQVNDI  151 (245)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhhhhhccccce
Confidence            468999999999999999999999877776665

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR00606 rad50 rad50

Probab=96.84  E-value=0.0013  Score=79.21  Aligned_cols=32  Identities=28%  Similarity=0.583  Sum_probs=27.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHH----hcccCCC-Ccee
Q 010471          478 NEVVAIVGLSGSGKSTFVNLL----LRLYEPS-DGQV  509 (510)
Q Consensus       478 Ge~vAIVG~SGSGKSTL~kLL----~g~y~p~-sG~I  509 (510)
                      ...++||||+|||||||+..|    .|..+|. .|.+
T Consensus        28 ~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~   64 (1311)
T TIGR00606        28 SPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNT   64 (1311)
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCce
Confidence            359999999999999999998    5999996 5653

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=96.76  E-value=0.0011  Score=68.72  Aligned_cols=52  Identities=29%  Similarity=0.369  Sum_probs=39.8

Q ss_pred             eeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCce
Q 010471          454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ  508 (510)
Q Consensus       454 nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~  508 (510)
                      ++.-+|..+  -..|..+= +.++|++++|+|++|-||||-+|+|+|-..|+=|+
T Consensus        79 e~vHRYg~N--gFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~  130 (591)
T COG1245          79 EVVHRYGVN--GFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGR  130 (591)
T ss_pred             cceeeccCC--ceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCC
Confidence            456677532  23333331 45699999999999999999999999999998775

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=96.75  E-value=0.0014  Score=67.42  Aligned_cols=48  Identities=21%  Similarity=0.331  Sum_probs=42.7

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL  499 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~  499 (510)
                      +|.++|.+.+-.+   ...+.|-|++|-.|...++|||+|-|||||++-|+
T Consensus       264 DIKiEnF~ISA~G---k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa  311 (807)
T KOG0066|consen  264 DIKIENFDISAQG---KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIA  311 (807)
T ss_pred             cceeeeeeeeccc---ceeeeccceEEEecceecccCCCCCchHHHHHHHH
Confidence            6888888888754   46999999999999999999999999999998775

>PRK12289 GTPase RsgA; Reviewed

Probab=96.70  E-value=0.0013  Score=67.71  Aligned_cols=33  Identities=36%  Similarity=0.542  Sum_probs=28.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      .+++++|+|+||.|||||+|.|++-....-|+|
T Consensus       171 ~~ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~v  203 (352)
T PRK12289        171 RNKITVVAGPSGVGKSSLINRLIPDVELRVGKV  203 (352)
T ss_pred             ccceEEEEeCCCCCHHHHHHHHcCccccccccc
Confidence            467899999999999999999998777666654

>COG1162 Predicted GTPases [General function prediction only]

Probab=96.69  E-value=0.001  Score=66.07  Aligned_cols=34  Identities=35%  Similarity=0.594  Sum_probs=28.4

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      -+|++++++|+||-|||||+|.|.+--+-.-|+|
T Consensus       162 l~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eI  195 (301)
T COG1162         162 LAGKITVLLGQSGVGKSTLINALLPELNQKTGEI  195 (301)
T ss_pred             hcCCeEEEECCCCCcHHHHHHhhCchhhhhhhhh
Confidence            4788999999999999999999988655555555

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=96.69  E-value=0.0014  Score=67.48  Aligned_cols=35  Identities=23%  Similarity=0.451  Sum_probs=29.6

Q ss_pred             eeCCCEEEEEcCCCCcHHHHHHHHhcccCC-CCcee
Q 010471          475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQV  509 (510)
Q Consensus       475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-~sG~I  509 (510)
                      .+++..+.|.||+||||||+++.|++.+++ .+|.|
T Consensus       119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i  154 (343)
T TIGR01420       119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHI  154 (343)
T ss_pred             hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEE
Confidence            457899999999999999999999997764 45655

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=96.68  E-value=1.6  Score=49.15  Aligned_cols=114  Identities=16%  Similarity=-0.025  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          192 SGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLT----ADCQRLSNVIGNDINMILRNSLQGAGAFINLL  267 (510)
Q Consensus       192 ~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~----~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~  267 (510)
                      ..+..+...++..++|.++.+++.+..+..+...+....-++..    .=++.++.+ ...+...+..++..++.++...
T Consensus       152 ~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~~~g~~~srlt~Dv~~i-~~~~~~~~~~l~~~~~~ii~~~  230 (659)
T TIGR00954       152 NSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDSRIQNPDQLLTQDVEKF-CDSVVELYSNLTKPILDVILYS  230 (659)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455666777777777777766655554444332211222    112233333 3333444444444444444333


Q ss_pred             HHhH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 010471          268 TLSW-PLTLSALLICSFLSIIVSVYGQY-QKRASVLTQECN  306 (510)
Q Consensus       268 ~~s~-~l~li~li~~~l~~~~~~~~~~~-~~~~~~~~~~~~  306 (510)
                      .+=+ .+.....+++.++..+..+..++ .++..+...+..
T Consensus       231 ~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~  271 (659)
T TIGR00954       231 FKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQ  271 (659)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHH
Confidence            3333 25454434333333333333333 344444343333

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=96.67  E-value=0.0015  Score=57.00  Aligned_cols=29  Identities=17%  Similarity=0.258  Sum_probs=25.6

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP  504 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p  504 (510)
                      +.+..+.|+|++|+||||+++.+.+.+..
T Consensus        17 ~~~~~v~i~G~~G~GKT~l~~~i~~~~~~   45 (151)
T cd00009          17 PPPKNLLLYGPPGTGKTTLARAIANELFR   45 (151)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence            37788999999999999999999988743

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase

Probab=96.54  E-value=0.0019  Score=66.31  Aligned_cols=35  Identities=37%  Similarity=0.538  Sum_probs=32.3

Q ss_pred             eeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      ++.+..+.|+|++||||||+++.|+++.+|++|.|
T Consensus       175 v~~~~~ili~G~tGsGKTTll~al~~~i~~~~riv  209 (340)
T TIGR03819       175 VAARLAFLISGGTGSGKTTLLSALLALVAPDERIV  209 (340)
T ss_pred             HhCCCeEEEECCCCCCHHHHHHHHHccCCCCCcEE
Confidence            56789999999999999999999999999998865

Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=96.53  E-value=0.0021  Score=64.01  Aligned_cols=34  Identities=26%  Similarity=0.282  Sum_probs=28.6

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG  507 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG  507 (510)
                      .=+.+..++|+|++|||||||++.+.+......+
T Consensus       100 ~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~  133 (290)
T PRK10463        100 AARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVP  133 (290)
T ss_pred             HhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCC
Confidence            3467999999999999999999999887766543

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.46  E-value=0.0018  Score=66.68  Aligned_cols=29  Identities=21%  Similarity=0.405  Sum_probs=25.1

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      .+.+|+++++|||+||||||++.-|+..+
T Consensus       202 ~~~~~~ii~lvGptGvGKTTt~akLA~~l  230 (407)
T PRK12726        202 DLSNHRIISLIGQTGVGKTTTLVKLGWQL  230 (407)
T ss_pred             eecCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998887654

>cd01858 NGP_1 NGP-1

Probab=96.46  E-value=0.0022  Score=58.10  Aligned_cols=27  Identities=26%  Similarity=0.330  Sum_probs=22.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      ++-.+++||+||.|||||+|.|.|--.
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~  127 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKV  127 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCc
Confidence            345789999999999999999988544

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=96.43  E-value=0.0032  Score=72.24  Aligned_cols=39  Identities=18%  Similarity=0.284  Sum_probs=33.1

Q ss_pred             ceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       471 isltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      +|+.+.++..++|+|+|||||||+++.|++.+....++|
T Consensus       439 ~n~~~~~~~~~~i~G~tGsGKS~l~~~l~~~~~~~~~~i  477 (800)
T PRK13898        439 FNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQAMKFSPRM  477 (800)
T ss_pred             EEEEEcCCCEEEEECCCCCcHHHHHHHHHhhcccCCCeE
Confidence            467778888999999999999999999999776665554

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=96.42  E-value=0.0022  Score=67.29  Aligned_cols=27  Identities=44%  Similarity=0.644  Sum_probs=24.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRLYEPS  505 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~y~p~  505 (510)
                      ++|+|+|++|||||||++.|++.|...
T Consensus       220 ~~IvI~G~~gsGKTTL~~~La~~~g~~  246 (399)
T PRK08099        220 RTVAILGGESSGKSTLVNKLANIFNTT  246 (399)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence            689999999999999999999987543

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=96.42  E-value=0.0033  Score=66.83  Aligned_cols=55  Identities=25%  Similarity=0.435  Sum_probs=47.7

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      -.+++|++..       ..++|+||++.+||+++|-|-=|||+|=+++.|.|..++.+|+|.
T Consensus       263 ~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~  317 (500)
T COG1129         263 VLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEIL  317 (500)
T ss_pred             EEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEE
Confidence            3566766533       258999999999999999999999999999999999999999984

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=96.42  E-value=0.0021  Score=65.79  Aligned_cols=32  Identities=28%  Similarity=0.421  Sum_probs=28.4

Q ss_pred             eeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC
Q 010471          475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD  506 (510)
Q Consensus       475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s  506 (510)
                      ++.+..+.|+|++||||||+++.|+++.++++
T Consensus       157 v~~~~nili~G~tgSGKTTll~aL~~~ip~~~  188 (332)
T PRK13900        157 VISKKNIIISGGTSTGKTTFTNAALREIPAIE  188 (332)
T ss_pred             HHcCCcEEEECCCCCCHHHHHHHHHhhCCCCC
Confidence            45788999999999999999999999987653

>cd01882 BMS1 Bms1

Probab=96.37  E-value=0.0027  Score=61.32  Aligned_cols=29  Identities=38%  Similarity=0.578  Sum_probs=25.3

Q ss_pred             eeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          475 IEANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      .++|+.++|||+||+|||||++.|.+.++
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~   64 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYT   64 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            45889999999999999999988887643

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.34  E-value=1  Score=43.00  Aligned_cols=168  Identities=13%  Similarity=0.050  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010471          193 GCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQ-RLSNVIGNDINMILRNSLQGAGAFINLLTLSW  271 (510)
Q Consensus       193 ~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~-~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~  271 (510)
                      ........+...+++.++.+++.+.......+.....=...+.+-+. .+++ +...+...+..++..+...+..+.+-.
T Consensus        59 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~-i~~~~~~~~~~~~~~~~~~i~~~~~~~  137 (275)
T PF00664_consen   59 YIYFYLSSRISQRIRKDLRKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQ-IENFLSSSLFQIISSIISIIFSLILLF  137 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccc-ccccccccccccccccchhhhhhhccc
Confidence            33444566888999999999998887775555443333333333322 2222 233333333333333333333333333


Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Q 010471          272 PLTLSALLICS-FLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRE  350 (510)
Q Consensus       272 ~l~li~li~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~  350 (510)
                      .+.....+... +..+.........++..+...+..+..++......+.++-+|.-..-+.+....++ .++..+...+.
T Consensus       138 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~-~~~~~~~~~~~  216 (275)
T PF00664_consen  138 FISWKLALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLER-FNKALEKYRKA  216 (275)
T ss_dssp             HHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHH-HHHHHHHHHHH
T ss_pred             ccccccccccchhhhhhHhhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHH-HHHHHHHHHHH
Confidence            33333333333 33333344444445555555555555555555566677777777666665444443 44444434444


Q ss_pred             HHHHHHHHHHHH
Q 010471          351 SMAYGLWNMSFI  362 (510)
Q Consensus       351 ~~~~~~~~~~~~  362 (510)
                      ............
T Consensus       217 ~~~~~~~~~~~~  228 (275)
T PF00664_consen  217 SFKYAKIQALLS  228 (275)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            344444443333

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=96.32  E-value=0.0027  Score=64.08  Aligned_cols=30  Identities=37%  Similarity=0.497  Sum_probs=26.9

Q ss_pred             eeCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471          475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEP  504 (510)
Q Consensus       475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p  504 (510)
                      +..+..+.|+|++||||||+++.|+++.+.
T Consensus       129 v~~~~~ilI~G~tGSGKTTll~al~~~i~~  158 (299)
T TIGR02782       129 VLARKNILVVGGTGSGKTTLANALLAEIAK  158 (299)
T ss_pred             HHcCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence            557889999999999999999999999853

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>TIGR00602 rad24 checkpoint protein rad24

Probab=96.32  E-value=0.0019  Score=71.33  Aligned_cols=38  Identities=29%  Similarity=0.366  Sum_probs=34.6

Q ss_pred             ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471          467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP  504 (510)
Q Consensus       467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p  504 (510)
                      .+++.++...+|+.+.|.||+||||||+++++++...+
T Consensus        99 ~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~  136 (637)
T TIGR00602        99 WLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGI  136 (637)
T ss_pred             HHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            57888899999999999999999999999999997654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG3910 Predicted ATPase [General function prediction only]

Probab=96.31  E-value=0.0028  Score=58.45  Aligned_cols=21  Identities=38%  Similarity=0.594  Sum_probs=18.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHh
Q 010471          479 EVVAIVGLSGSGKSTFVNLLL  499 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~  499 (510)
                      .+|-|||++|||||||+-.|+
T Consensus        38 pIT~i~GENGsGKSTLLEaiA   58 (233)
T COG3910          38 PITFITGENGSGKSTLLEAIA   58 (233)
T ss_pred             ceEEEEcCCCccHHHHHHHHH
Confidence            578899999999999997764

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.31  E-value=0.0023  Score=64.04  Aligned_cols=30  Identities=33%  Similarity=0.463  Sum_probs=25.7

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPS  505 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~  505 (510)
                      ++|+.++||||+|+||||++.-|+..+...
T Consensus       192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~  221 (282)
T TIGR03499       192 EQGGVIALVGPTGVGKTTTLAKLAARFVLE  221 (282)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            478999999999999999998888776543

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=96.30  E-value=2.5  Score=46.92  Aligned_cols=34  Identities=18%  Similarity=0.106  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010471          183 TSGIFSGLRSGCFSIANIVLVKRLRETLYSALLF  216 (510)
Q Consensus       183 ~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~  216 (510)
                      +..++.++..+.......++..++|.++-+++.+
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~   97 (585)
T TIGR01192        64 GFGVFNTIAYVLVAREADRLAHGRRATLLTEAFG   97 (585)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555555666667777777776666653

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.30  E-value=0.0024  Score=68.35  Aligned_cols=26  Identities=38%  Similarity=0.585  Sum_probs=22.4

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      ++|++++|||++|+||||++.-|+..
T Consensus       348 ~~G~vIaLVGPtGvGKTTtaakLAa~  373 (559)
T PRK12727        348 ERGGVIALVGPTGAGKTTTIAKLAQR  373 (559)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999666654

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=96.28  E-value=0.0041  Score=61.66  Aligned_cols=29  Identities=24%  Similarity=0.407  Sum_probs=24.5

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP  504 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p  504 (510)
                      .++..+.|.|++||||||+++.++...++
T Consensus        78 ~~~GlilisG~tGSGKTT~l~all~~i~~  106 (264)
T cd01129          78 KPHGIILVTGPTGSGKTTTLYSALSELNT  106 (264)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence            46678999999999999999977766654

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PTZ00202 tuzin; Provisional

Probab=96.28  E-value=0.002  Score=67.08  Aligned_cols=34  Identities=24%  Similarity=0.413  Sum_probs=29.5

Q ss_pred             CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      .+|++++.+.++  .++|+|++|||||||++.+.+-
T Consensus       276 ~VL~~~d~~~pr--ivvLtG~~G~GKTTLlR~~~~~  309 (550)
T PTZ00202        276 QVLRRLDTAHPR--IVVFTGFRGCGKSSLCRSAVRK  309 (550)
T ss_pred             HHHhccCCCCce--EEEEECCCCCCHHHHHHHHHhc
Confidence            378888888774  9999999999999999888764

>cd01878 HflX HflX subfamily

Probab=96.27  E-value=0.003  Score=59.63  Aligned_cols=23  Identities=43%  Similarity=0.559  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccc
Q 010471          480 VVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +|+|+|++|||||||++.+.+-.
T Consensus        43 ~I~iiG~~g~GKStLl~~l~~~~   65 (204)
T cd01878          43 TVALVGYTNAGKSTLFNALTGAD   65 (204)
T ss_pred             eEEEECCCCCCHHHHHHHHhcch
Confidence            79999999999999999999863

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=96.27  E-value=2.9  Score=47.47  Aligned_cols=10  Identities=20%  Similarity=0.454  Sum_probs=5.3

Q ss_pred             ccccceEEee
Q 010471          467 ILNHVCLTIE  476 (510)
Q Consensus       467 vL~nisltI~  476 (510)
                      .++|++|.-+
T Consensus       475 ~~~~vsf~y~  484 (708)
T TIGR01193       475 VINDVSYSYG  484 (708)
T ss_pred             EEEEEEEEcC
Confidence            3555555554

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>COG1133 SbmA ABC-type long-chain fatty acid transport system, fused permease and ATPase components [Lipid metabolism]

Probab=96.26  E-value=1.4  Score=43.69  Aligned_cols=196  Identities=13%  Similarity=0.105  Sum_probs=103.6

Q ss_pred             CchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------------HHHHHHHHHHHHHHHHHHH
Q 010471          226 AVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPL-------------TLSALLICSFLSIIVSVYG  292 (510)
Q Consensus       226 ~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l-------------~li~li~~~l~~~~~~~~~  292 (510)
                      +.-.-.+|+..|+.+.+..+...-..++.++++.+..+=+++.+|-..             ...+++....-.......+
T Consensus       182 hIEGasQRvQEDTmrFSstlE~LGvsfi~siMTLiaFlPvL~~ls~~Vs~Lpiig~ip~~Lv~aAi~wslfGtv~la~vG  261 (405)
T COG1133         182 HIEGASQRVQEDTMRFSSTLENLGVSFINAIMTLIAFLPVLFTLSAHVSELPIIGHIPHALVWAAIVWSLFGTVLLAVVG  261 (405)
T ss_pred             cccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccCcccccCchHHHHHHHHHHHhchHHHHhhh
Confidence            344466899999999888777777778888888888887777765332             2222222111111111222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          293 QYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMA  372 (510)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~  372 (510)
                      -+..-+.-+.|...+.-.   .|.+-|=.. +-...-....+-|...-.++.+.....    .-++....+-.++-.+.-
T Consensus       262 IKLPGLef~NQrvEAAyR---KELVYgEDh-~drA~p~T~~ELf~nvr~NYfRLyfHY----~YFNiari~ylQ~dnif~  333 (405)
T COG1133         262 IKLPGLEFRNQRVEAAYR---KELVYGEDH-ADRATPPTVRELFSNVRKNYFRLYFHY----MYFNIARILYLQVDNIFG  333 (405)
T ss_pred             ccCCCcccccHHHHHHHH---hhhhccCCc-hhhcCCchHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence            221111111111111111   111111110 111111122233333333333332222    122222222223334444


Q ss_pred             HHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010471          373 VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLID  429 (510)
Q Consensus       373 l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~  429 (510)
                      +.+-+-.+..|+++.|.+.-..-...++.++..-+.+.+..+.+-+.--+|+.+...
T Consensus       334 llil~PsivAgkitlG~~~QI~n~FgqVr~SfqylinsWTTIveL~SIyKRLraFE~  390 (405)
T COG1133         334 LLILFPSIVAGKITLGLMTQITNVFGQVRGSFQYLINSWTTIVELLSIYKRLRAFEA  390 (405)
T ss_pred             HHHHhhHHHhchhhHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            444444567899999998888888888999999999999999999998999988854

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=96.23  E-value=0.0051  Score=54.73  Aligned_cols=23  Identities=30%  Similarity=0.551  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccc
Q 010471          480 VVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +++++|.||+||||+++.|+|--
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~  107 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKK  107 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            89999999999999999998743

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PTZ00035 Rad51 protein; Provisional

Probab=96.23  E-value=0.0034  Score=64.42  Aligned_cols=30  Identities=20%  Similarity=0.321  Sum_probs=27.1

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      =|++|+.+.|+|++|||||||+..++...+
T Consensus       114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~q  143 (337)
T PTZ00035        114 GIETGSITELFGEFRTGKTQLCHTLCVTCQ  143 (337)
T ss_pred             CCCCCeEEEEECCCCCchhHHHHHHHHHhc
Confidence            478999999999999999999998887665

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=96.22  E-value=0.0026  Score=63.09  Aligned_cols=35  Identities=34%  Similarity=0.564  Sum_probs=30.7

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCce
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ  508 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~  508 (510)
                      -++.+..+.|.|+.||||||+++.|++..++....
T Consensus       123 ~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~  157 (270)
T PF00437_consen  123 AVRGRGNILISGPTGSGKTTLLNALLEEIPPEDER  157 (270)
T ss_dssp             CHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSE
T ss_pred             ccccceEEEEECCCccccchHHHHHhhhccccccc
Confidence            45679999999999999999999999999887443

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>PRK09866 hypothetical protein; Provisional

Probab=96.19  E-value=0.0039  Score=67.82  Aligned_cols=24  Identities=42%  Similarity=0.481  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcccC
Q 010471          480 VVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      ++|+||+||+|||||+|.|.|..-
T Consensus        71 ~valvG~sgaGKSTLiNaL~G~~V   94 (741)
T PRK09866         71 VLAIVGTMKAGKSTTINAIVGTEV   94 (741)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcc
Confidence            689999999999999999999754

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=96.18  E-value=3.2  Score=47.11  Aligned_cols=45  Identities=7%  Similarity=0.125  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHH
Q 010471          298 ASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEK  342 (510)
Q Consensus       298 ~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~  342 (510)
                      ..+...+......+......+.++-++.....+.+....++..+.
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~  361 (710)
T TIGR03796       317 RVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGY  361 (710)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHH
Confidence            333333333333444445555666666666555554444444333

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK09087 hypothetical protein; Validated

Probab=96.16  E-value=0.0037  Score=60.48  Aligned_cols=23  Identities=30%  Similarity=0.530  Sum_probs=20.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHh
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLL  499 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~  499 (510)
                      ++..+.|+|+||||||+|+++++
T Consensus        43 ~~~~l~l~G~~GsGKThLl~~~~   65 (226)
T PRK09087         43 PSPVVVLAGPVGSGKTHLASIWR   65 (226)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHH
Confidence            35569999999999999999998

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=96.13  E-value=0.0038  Score=63.49  Aligned_cols=29  Identities=31%  Similarity=0.589  Sum_probs=26.3

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      -+++++.+.|+|++||||||+++.|++.+
T Consensus       144 ~v~~~~~ilI~G~tGSGKTTll~aL~~~~  172 (319)
T PRK13894        144 AVRAHRNILVIGGTGSGKTTLVNAIINEM  172 (319)
T ss_pred             HHHcCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            36789999999999999999999999874

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=96.11  E-value=0.0041  Score=64.11  Aligned_cols=28  Identities=46%  Similarity=0.689  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471          480 VVAIVGLSGSGKSTFVNLLLRLYEPSDG  507 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g~y~p~sG  507 (510)
                      .+|++|+|||||||++|.|-|+=+-++|
T Consensus        37 ~IaV~G~sGsGKSSfINalrGl~~~d~~   64 (376)
T PF05049_consen   37 NIAVTGESGSGKSSFINALRGLGHEDEG   64 (376)
T ss_dssp             EEEEEESTTSSHHHHHHHHTT--TTSTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCcC
Confidence            4799999999999999999887554443

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=96.03  E-value=0.0079  Score=62.01  Aligned_cols=50  Identities=30%  Similarity=0.741  Sum_probs=44.2

Q ss_pred             eEECCCCCCCCccccceEEeeCCC-----EEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471          456 SFHYPSRPTVPILNHVCLTIEANE-----VVAIVGLSGSGKSTFVNLLLRLYEPSDG  507 (510)
Q Consensus       456 sF~Y~~~~~~~vL~nisltI~~Ge-----~vAIVG~SGSGKSTL~kLL~g~y~p~sG  507 (510)
                      .++||+-  ..-+.++.|.|+.|+     .+-..|++|-||||++++|+|..+|++|
T Consensus       342 ~y~Yp~m--~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~  396 (592)
T KOG0063|consen  342 RYSYPKM--KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEG  396 (592)
T ss_pred             eeccCcc--eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCcc
Confidence            3779864  568999999999996     5778899999999999999999999988

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=96.02  E-value=0.0048  Score=60.53  Aligned_cols=27  Identities=22%  Similarity=0.380  Sum_probs=23.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      ..-+++++|+||+||||+++.|+|-..
T Consensus        30 ~~~~IllvG~tGvGKSSliNaLlg~~~   56 (249)
T cd01853          30 FSLTILVLGKTGVGKSSTINSIFGERK   56 (249)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCC
Confidence            335799999999999999999999653

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PLN02348 phosphoribulokinase

Probab=95.91  E-value=0.0053  Score=63.49  Aligned_cols=25  Identities=36%  Similarity=0.577  Sum_probs=22.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      =.|||.|+|||||||+++-|.....
T Consensus        50 ~IIGIaG~SGSGKSTfA~~L~~~Lg   74 (395)
T PLN02348         50 VVIGLAADSGCGKSTFMRRLTSVFG   74 (395)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3899999999999999998887663

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=95.86  E-value=3.7  Score=45.09  Aligned_cols=10  Identities=20%  Similarity=0.311  Sum_probs=5.2

Q ss_pred             ccccceEEee
Q 010471          467 ILNHVCLTIE  476 (510)
Q Consensus       467 vL~nisltI~  476 (510)
                      .++|++|.-+
T Consensus       324 ~~~~v~f~y~  333 (547)
T PRK10522        324 ELRNVTFAYQ  333 (547)
T ss_pred             EEEEEEEEeC
Confidence            3555555554

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.83  E-value=0.0078  Score=70.01  Aligned_cols=40  Identities=28%  Similarity=0.487  Sum_probs=37.1

Q ss_pred             CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       464 ~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      ...+|+|+|.-++||+.+-+.|+.|||||||+|.|+|-.+
T Consensus       127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~  166 (1391)
T KOG0065|consen  127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLD  166 (1391)
T ss_pred             cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCc
Confidence            3469999999999999999999999999999999999765

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=95.81  E-value=4.5  Score=45.74  Aligned_cols=39  Identities=5%  Similarity=0.066  Sum_probs=20.0

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 010471          121 SRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAV  159 (510)
Q Consensus       121 ~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i  159 (510)
                      ..++++-+.+...++..++..+++-+..+..-.++..++
T Consensus       147 ~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl  185 (709)
T COG2274         147 PLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVL  185 (709)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            334444444555555565555555555555444444443

>PLN03210 Resistant to P

Probab=95.78  E-value=0.005  Score=73.45  Aligned_cols=38  Identities=32%  Similarity=0.384  Sum_probs=29.4

Q ss_pred             ceEEeeCCCEEEEEcCCCCcHHHHHHHHhc-ccCCCCce
Q 010471          471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLR-LYEPSDGQ  508 (510)
Q Consensus       471 isltI~~Ge~vAIVG~SGSGKSTL~kLL~g-~y~p~sG~  508 (510)
                      +++..+.++++||+|++|+|||||++.+.+ +-+..+|.
T Consensus       200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~  238 (1153)
T PLN03210        200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSS  238 (1153)
T ss_pred             HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeE
Confidence            456677889999999999999999999943 33333454

syringae 6; Provisional

>smart00763 AAA_PrkA PrkA AAA domain

Probab=95.78  E-value=0.0061  Score=62.47  Aligned_cols=28  Identities=32%  Similarity=0.514  Sum_probs=24.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLYEP  504 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p  504 (510)
                      +.+.++|+||.|||||||++.|++-+.-
T Consensus        77 ~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       77 RKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4578899999999999999999877643

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PLN02772 guanylate kinase

Probab=95.77  E-value=0.0082  Score=62.12  Aligned_cols=56  Identities=20%  Similarity=0.421  Sum_probs=36.1

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEee------CCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIE------ANEVVAIVGLSGSGKSTFVNLLLRLYEP  504 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~------~Ge~vAIVG~SGSGKSTL~kLL~g~y~p  504 (510)
                      .+|-|=.|.=.|-. +.+.+|..==...+      .++.+.|+||||+|||||++.|..-++.
T Consensus       100 ~~~w~l~~~t~~~~-~~~~~~~~eV~~~~~~~~~~~~k~iVlsGPSGvGKsTL~~~L~~~~p~  161 (398)
T PLN02772        100 DSIWFLEVDTPFVR-EQKKLLGTEVVAWSKGVRGNAEKPIVISGPSGVGKGTLISMLMKEFPS  161 (398)
T ss_pred             cceEEEEcCCHHHH-hhcccccceeeecccCCCCCCCcEEEEECCCCCCHHHHHHHHhhhccc
Confidence            35666566555542 22334433223333      4568999999999999999999876643

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=95.74  E-value=0.0075  Score=62.57  Aligned_cols=29  Identities=31%  Similarity=0.395  Sum_probs=25.4

Q ss_pred             eeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          475 IEANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      ++++..+.|+|++||||||+++.|.+.+.
T Consensus       146 ~~~~GlilI~G~TGSGKTT~l~al~~~i~  174 (372)
T TIGR02525       146 LPAAGLGLICGETGSGKSTLAASIYQHCG  174 (372)
T ss_pred             HhcCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35667899999999999999999998884

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.70  E-value=0.0068  Score=62.76  Aligned_cols=26  Identities=23%  Similarity=0.478  Sum_probs=23.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          478 NEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       478 Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      +.+++|||++||||||++..|++.+.
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~  266 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFH  266 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHH
Confidence            47999999999999999999987654

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=95.66  E-value=0.0072  Score=60.14  Aligned_cols=33  Identities=24%  Similarity=0.389  Sum_probs=26.1

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhcccCCCCce
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ  508 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~  508 (510)
                      +++++++++|++|+||||.+.-|+..+......
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~  102 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKS  102 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCE
Confidence            467899999999999999888777777544333

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=95.65  E-value=0.0097  Score=53.77  Aligned_cols=27  Identities=30%  Similarity=0.507  Sum_probs=24.2

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +.+..+++||.+|+||||+++.|.|-.
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~  124 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKL  124 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccc
Confidence            357889999999999999999999865

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01855 YqeH YqeH

Probab=95.64  E-value=0.0081  Score=56.22  Aligned_cols=36  Identities=31%  Similarity=0.410  Sum_probs=28.5

Q ss_pred             ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +++.+.=.++.+..+++||.+|+|||||++.|.+-.
T Consensus       116 L~~~l~~~l~~~~~~~~~G~~nvGKStliN~l~~~~  151 (190)
T cd01855         116 LINAIKKLAKKGGDVYVVGATNVGKSTLINALLKKD  151 (190)
T ss_pred             HHHHHHHHhhcCCcEEEEcCCCCCHHHHHHHHHHhc
Confidence            444444445678899999999999999999998743

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=95.64  E-value=0.0079  Score=66.00  Aligned_cols=32  Identities=34%  Similarity=0.422  Sum_probs=27.8

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG  507 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG  507 (510)
                      ++|+++.|+|.|||||||+++.|++.+....|
T Consensus       390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g  421 (568)
T PRK05537        390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRG  421 (568)
T ss_pred             CCCeEEEEECCCCChHHHHHHHHHHHhhhccC
Confidence            38999999999999999999999988776333

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=95.62  E-value=0.0079  Score=63.65  Aligned_cols=29  Identities=38%  Similarity=0.564  Sum_probs=23.7

Q ss_pred             eeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          475 IEANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      +.+|+++++|||+|+||||++.-|+..+.
T Consensus       218 ~~~~~~i~~vGptGvGKTTt~~kLA~~~~  246 (424)
T PRK05703        218 LKQGGVVALVGPTGVGKTTTLAKLAARYA  246 (424)
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34688999999999999998877766543

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=95.62  E-value=0.0076  Score=61.25  Aligned_cols=28  Identities=32%  Similarity=0.487  Sum_probs=24.8

Q ss_pred             eeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          475 IEANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +..+.-+.|.|++||||||+++.|++..
T Consensus       141 v~~~~nilI~G~tGSGKTTll~aL~~~i  168 (323)
T PRK13833        141 IDSRLNIVISGGTGSGKTTLANAVIAEI  168 (323)
T ss_pred             HHcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4457788999999999999999999986

>PRK05439 pantothenate kinase; Provisional

Probab=95.56  E-value=0.0075  Score=60.92  Aligned_cols=25  Identities=36%  Similarity=0.436  Sum_probs=21.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      -.|||.|++||||||+++.|..++.
T Consensus        87 ~iIgIaG~~gsGKSTla~~L~~~l~  111 (311)
T PRK05439         87 FIIGIAGSVAVGKSTTARLLQALLS  111 (311)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3689999999999999999987653

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=95.48  E-value=0.0099  Score=65.95  Aligned_cols=31  Identities=23%  Similarity=0.244  Sum_probs=26.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG  507 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG  507 (510)
                      ..+.+.|+||+||||||+++++.++..+.+|
T Consensus       174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~  204 (615)
T TIGR02903       174 FPQHIILYGPPGVGKTTAARLALEEAKKLKH  204 (615)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHhhhhccC
Confidence            3456999999999999999999998876544

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=95.48  E-value=0.0074  Score=61.37  Aligned_cols=34  Identities=24%  Similarity=0.332  Sum_probs=27.9

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhc--ccCCCCc
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDG  507 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g--~y~p~sG  507 (510)
                      =+++|+.+.|.|++|||||||+.-++.  ..+++.|
T Consensus        92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~G  127 (316)
T TIGR02239        92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQG  127 (316)
T ss_pred             CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcC
Confidence            588999999999999999999988876  3444443

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>PRK12608 transcription termination factor Rho; Provisional

Probab=95.48  E-value=0.011  Score=60.80  Aligned_cols=30  Identities=17%  Similarity=0.183  Sum_probs=26.4

Q ss_pred             EEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       473 ltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +.|-+||.+.|+|+.|+|||||++-|++-.
T Consensus       128 ~PiGkGQR~LIvG~pGtGKTTLl~~la~~i  157 (380)
T PRK12608        128 APIGKGQRGLIVAPPRAGKTVLLQQIAAAV  157 (380)
T ss_pred             eecCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            567799999999999999999999877644

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=95.43  E-value=6.2  Score=44.70  Aligned_cols=13  Identities=0%  Similarity=0.212  Sum_probs=7.4

Q ss_pred             ccccceEEeeCCC
Q 010471          467 ILNHVCLTIEANE  479 (510)
Q Consensus       467 vL~nisltI~~Ge  479 (510)
                      .++|++|.-++++
T Consensus       457 ~~~~vsf~y~~~~  469 (694)
T TIGR01846       457 TFENIRFRYAPDS  469 (694)
T ss_pred             EEEEEEEEcCCCC
Confidence            4566666665443

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=95.42  E-value=0.012  Score=59.85  Aligned_cols=28  Identities=32%  Similarity=0.512  Sum_probs=24.8

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      .+.+++.++|+|.+||||||+.+.|+..
T Consensus       129 ~~~~~~~I~l~G~~GsGKStvg~~La~~  156 (309)
T PRK08154        129 RAARRRRIALIGLRGAGKSTLGRMLAAR  156 (309)
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999999999743

>PLN02200 adenylate kinase family protein

Probab=95.41  E-value=0.011  Score=57.59  Aligned_cols=26  Identities=23%  Similarity=0.394  Sum_probs=22.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +-..+.|+|++||||||+++.|+..|
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~~~   67 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVETF   67 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            33678999999999999999998554

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=95.40  E-value=0.0097  Score=51.70  Aligned_cols=30  Identities=33%  Similarity=0.531  Sum_probs=25.9

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      .+++|+++++-|+=||||||++|-+++...
T Consensus        11 ~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg   40 (123)
T PF02367_consen   11 ILKPGDVILLSGDLGAGKTTFVRGLARALG   40 (123)
T ss_dssp             HHSS-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             hCCCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence            358999999999999999999999988763

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=95.37  E-value=6.4  Score=44.55  Aligned_cols=9  Identities=22%  Similarity=0.309  Sum_probs=4.6

Q ss_pred             EEeeeEECC
Q 010471          452 FVNISFHYP  460 (510)
Q Consensus       452 f~nVsF~Y~  460 (510)
                      ++|++|.-+
T Consensus       481 L~~i~l~i~  489 (694)
T TIGR03375       481 LDNVSLTIR  489 (694)
T ss_pred             eeeeeEEEC
Confidence            455555543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK10646 ADP-binding protein; Provisional

Probab=95.32  E-value=0.014  Score=52.57  Aligned_cols=34  Identities=26%  Similarity=0.378  Sum_probs=28.6

Q ss_pred             ceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471          471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP  504 (510)
Q Consensus       471 isltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p  504 (510)
                      +.-.+++|.++++.|.=|+||||++|-+++-...
T Consensus        21 la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~   54 (153)
T PRK10646         21 VAKACDGATVIYLYGDLGAGKTTFSRGFLQALGH   54 (153)
T ss_pred             HHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            4445679999999999999999999999876643

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=95.32  E-value=0.0091  Score=64.63  Aligned_cols=37  Identities=24%  Similarity=0.345  Sum_probs=28.6

Q ss_pred             cccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471          468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP  504 (510)
Q Consensus       468 L~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p  504 (510)
                      |++-...-++++...|.||+||||||.+++|++-+.+
T Consensus        35 l~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~   71 (519)
T PF03215_consen   35 LEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGF   71 (519)
T ss_pred             HHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4443344456678999999999999999999987644

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=95.29  E-value=0.0098  Score=62.87  Aligned_cols=28  Identities=39%  Similarity=0.647  Sum_probs=24.1

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      ||-=++|+|||+|+|||||++-|.|-|.
T Consensus        67 PPPfIvavvGPpGtGKsTLirSlVrr~t   94 (1077)
T COG5192          67 PPPFIVAVVGPPGTGKSTLIRSLVRRFT   94 (1077)
T ss_pred             CCCeEEEeecCCCCChhHHHHHHHHHHH
Confidence            4556899999999999999999988764

>TIGR02533 type_II_gspE general secretory pathway protein E

Probab=95.27  E-value=0.017  Score=62.15  Aligned_cols=31  Identities=23%  Similarity=0.407  Sum_probs=24.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG  507 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG  507 (510)
                      ++..+.|+||+||||||+++.+++...+...
T Consensus       241 ~~GlilitGptGSGKTTtL~a~L~~l~~~~~  271 (486)
T TIGR02533       241 PHGIILVTGPTGSGKTTTLYAALSRLNTPER  271 (486)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHhccCCCCC
Confidence            4568999999999999999966666654433

This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=95.23  E-value=0.015  Score=68.72  Aligned_cols=29  Identities=34%  Similarity=0.671  Sum_probs=25.2

Q ss_pred             eeCCCEEEEEcCCCCcHHHHHHHHh-cccC
Q 010471          475 IEANEVVAIVGLSGSGKSTFVNLLL-RLYE  503 (510)
Q Consensus       475 I~~Ge~vAIVG~SGSGKSTL~kLL~-g~y~  503 (510)
                      +..+..++|+||||||||||++.|+ .||.
T Consensus        27 l~~~~l~~I~G~tGaGKStildai~~aLyg   56 (1047)
T PRK10246         27 FASNGLFAITGPTGAGKTTLLDAICLALYH   56 (1047)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            4468999999999999999999888 6665

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=95.10  E-value=0.02  Score=53.45  Aligned_cols=32  Identities=28%  Similarity=0.368  Sum_probs=25.1

Q ss_pred             CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471          465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL  499 (510)
Q Consensus       465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~  499 (510)
                      ..++++   =+++|+.+-|+|++|+||||++.=++
T Consensus        22 ~~li~g---~~~~g~l~~i~g~~g~GKT~~~~~l~   53 (193)
T PF13481_consen   22 DWLIDG---LLPRGELTLIAGPPGSGKTTLALQLA   53 (193)
T ss_dssp             -EEETT---EE-TTSEEEEEECSTSSHHHHHHHHH
T ss_pred             ceeECC---cccCCeEEEEEeCCCCCHHHHHHHHH
Confidence            357776   47899999999999999999985443

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.09  E-value=0.011  Score=61.76  Aligned_cols=26  Identities=42%  Similarity=0.570  Sum_probs=22.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      ++.+++++|++||||||++.-|+..+
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~  247 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKY  247 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56789999999999999998887654

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=95.07  E-value=0.014  Score=59.57  Aligned_cols=27  Identities=33%  Similarity=0.427  Sum_probs=23.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRLYEPS  505 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~y~p~  505 (510)
                      -+++|.|++|||||||++-|...+...
T Consensus        57 ~~igi~G~~GaGKSTl~~~l~~~l~~~   83 (332)
T PRK09435         57 LRIGITGVPGVGKSTFIEALGMHLIEQ   83 (332)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            589999999999999999888777643

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=94.99  E-value=8.2  Score=43.65  Aligned_cols=41  Identities=7%  Similarity=-0.032  Sum_probs=19.8

Q ss_pred             hHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 010471          116 VWIALSRMWNLIG-RDKWIVLVAVASLIVAAVSEITMPRILA  156 (510)
Q Consensus       116 ~~~~l~~l~~~~~-~~~~~l~~~~l~~i~~~l~~l~~P~~~~  156 (510)
                      .+..++..++..+ .+...++..++..++.......+-.++.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid  164 (686)
T TIGR03797       123 LRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIG  164 (686)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555343333 4445555555555555444444444443

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=94.96  E-value=7.3  Score=42.94  Aligned_cols=10  Identities=0%  Similarity=0.092  Sum_probs=5.9

Q ss_pred             EEEeeeEECC
Q 010471          451 QFVNISFHYP  460 (510)
Q Consensus       451 ~f~nVsF~Y~  460 (510)
                      .++|++|.-+
T Consensus       355 iL~~inl~i~  364 (576)
T TIGR02204       355 ALDGLNLTVR  364 (576)
T ss_pred             cccceeEEec
Confidence            4566666654

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=94.96  E-value=0.022  Score=56.23  Aligned_cols=25  Identities=40%  Similarity=0.574  Sum_probs=22.0

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHH
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLL  498 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL  498 (510)
                      =+|+|..+.|.|++||||||++.-+
T Consensus        32 Gip~gs~~lI~G~pGtGKT~l~~qf   56 (259)
T TIGR03878        32 GIPAYSVINITGVSDTGKSLMVEQF   56 (259)
T ss_pred             CeECCcEEEEEcCCCCCHHHHHHHH
Confidence            3789999999999999999998543

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>PRK13764 ATPase; Provisional

Probab=94.94  E-value=0.018  Score=63.19  Aligned_cols=33  Identities=39%  Similarity=0.589  Sum_probs=28.0

Q ss_pred             eeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCce
Q 010471          475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ  508 (510)
Q Consensus       475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~  508 (510)
                      .++++-+.|+|++||||||+++.|++++.. +|.
T Consensus       254 ~~~~~~ILIsG~TGSGKTTll~AL~~~i~~-~~r  286 (602)
T PRK13764        254 EERAEGILIAGAPGAGKSTFAQALAEFYAD-MGK  286 (602)
T ss_pred             HhcCCEEEEECCCCCCHHHHHHHHHHHHhh-CCC
Confidence            466788999999999999999999999864 443

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=94.92  E-value=0.02  Score=57.05  Aligned_cols=32  Identities=25%  Similarity=0.483  Sum_probs=25.6

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS  505 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~  505 (510)
                      -+..|+-+-||||+|||||++++-.++-.+++
T Consensus        29 l~~~~~pvLl~G~~GtGKT~li~~~l~~l~~~   60 (272)
T PF12775_consen   29 LLSNGRPVLLVGPSGTGKTSLIQNFLSSLDSD   60 (272)
T ss_dssp             HHHCTEEEEEESSTTSSHHHHHHHHHHCSTTC
T ss_pred             HHHcCCcEEEECCCCCchhHHHHhhhccCCcc
Confidence            35688999999999999999996666555544

>PLN02199 shikimate kinase

Probab=94.89  E-value=0.0087  Score=59.65  Aligned_cols=48  Identities=21%  Similarity=0.359  Sum_probs=39.7

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeC---CCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEA---NEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~---Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      .++-.++. +|++   . .|++.+-+|.+   |..+.|||..||||||+.+.|+..
T Consensus        75 ~le~~~~~-~~de---~-~Lk~~a~~i~~~l~~~~I~LIG~~GSGKSTVgr~LA~~  125 (303)
T PLN02199         75 LLETGSVY-PFDE---D-ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKV  125 (303)
T ss_pred             hcccCCCC-CCCH---H-HHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            46666777 6642   2 49999999988   999999999999999999999863

>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A

Probab=94.86  E-value=0.026  Score=57.62  Aligned_cols=35  Identities=20%  Similarity=0.265  Sum_probs=31.0

Q ss_pred             cceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471          470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP  504 (510)
Q Consensus       470 nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p  504 (510)
                      |.-+.+-+|++.+|.|++|+|||+|++.|++-.+.
T Consensus       149 D~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~~~  183 (369)
T cd01134         149 DTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYSNS  183 (369)
T ss_pred             hccccccCCCEEEEECCCCCChHHHHHHHHhCCCC
Confidence            55689999999999999999999999999986543

These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=94.85  E-value=0.024  Score=56.12  Aligned_cols=37  Identities=24%  Similarity=0.423  Sum_probs=30.7

Q ss_pred             CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +.|+++.--+++|+.+.|.|++|+||||++.-++.-+
T Consensus        18 ~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~   54 (271)
T cd01122          18 PVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDL   54 (271)
T ss_pred             ceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3577777789999999999999999999987665443

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies

Probab=94.76  E-value=0.02  Score=54.29  Aligned_cols=33  Identities=39%  Similarity=0.529  Sum_probs=24.2

Q ss_pred             ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471          467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL  499 (510)
Q Consensus       467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~  499 (510)
                      ..+++.+.+....-+.|+|.||||||++++.++
T Consensus        27 ~~~~v~~dl~~~~h~li~G~tgsGKS~~l~~ll   59 (205)
T PF01580_consen   27 RGDPVVLDLKKNPHLLIAGATGSGKSTLLRTLL   59 (205)
T ss_dssp             TS-EEEEEGGGS-SEEEE--TTSSHHHHHHHHH
T ss_pred             CCCEEEEEcCCCceEEEEcCCCCCccHHHHHHH
Confidence            456788888888899999999999999997443

The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.

>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=94.75  E-value=0.02  Score=58.18  Aligned_cols=38  Identities=37%  Similarity=0.573  Sum_probs=33.6

Q ss_pred             ccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC
Q 010471          469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD  506 (510)
Q Consensus       469 ~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s  506 (510)
                      .-+-+-+..++.+-|+|+.||||||+++.++.+.+|+.
T Consensus       134 ayL~~~ie~~~siii~G~t~sGKTt~lnall~~Ip~~~  171 (312)
T COG0630         134 AYLWLAIEARKSIIICGGTASGKTTLLNALLDFIPPEE  171 (312)
T ss_pred             HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHhCCchh
Confidence            34556688999999999999999999999999999875

>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain

Probab=94.72  E-value=0.021  Score=56.49  Aligned_cols=33  Identities=15%  Similarity=0.266  Sum_probs=28.6

Q ss_pred             ceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       471 isltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      .=+.|-+||+.+|+|++|+|||||++.+.+-..
T Consensus        62 ~l~pig~GQr~~If~~~G~GKTtLa~~i~~~i~   94 (274)
T cd01133          62 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNIA   94 (274)
T ss_pred             ccCCcccCCEEEEecCCCCChhHHHHHHHHHHH
Confidence            447899999999999999999999998876543

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=94.70  E-value=8.5  Score=42.48  Aligned_cols=14  Identities=21%  Similarity=0.223  Sum_probs=9.7

Q ss_pred             CccccceEEeeCCC
Q 010471          466 PILNHVCLTIEANE  479 (510)
Q Consensus       466 ~vL~nisltI~~Ge  479 (510)
                      -.++|++|.-++++
T Consensus       342 i~~~~vsf~y~~~~  355 (582)
T PRK11176        342 IEFRNVTFTYPGKE  355 (582)
T ss_pred             EEEEEEEEecCCCC
Confidence            46788888876544

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=94.66  E-value=10  Score=43.14  Aligned_cols=44  Identities=7%  Similarity=-0.144  Sum_probs=21.7

Q ss_pred             chHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 010471          115 TVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEA  158 (510)
Q Consensus       115 ~~~~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~  158 (510)
                      ..++.++.+.+..+.....++..++..++..+....+..++...
T Consensus       148 ~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~  191 (711)
T TIGR00958       148 LLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTL  191 (711)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444334444445555555555555555555555444433

>PRK12597 F0F1 ATP synthase subunit beta; Provisional

Probab=94.62  E-value=0.023  Score=60.41  Aligned_cols=33  Identities=18%  Similarity=0.233  Sum_probs=28.3

Q ss_pred             cceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       470 nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      |.=++|-+||+++|+|++|+|||||+.-+.+--
T Consensus       135 D~l~pigkGQR~gIfa~~G~GKt~Ll~~~~~~~  167 (461)
T PRK12597        135 DLLCPIAKGGKTGLFGGAGVGKTVLMMELIFNI  167 (461)
T ss_pred             cccCccccCCEEEeecCCCCChhHHHHHHHHHH
Confidence            345899999999999999999999998776543

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=94.62  E-value=0.027  Score=53.94  Aligned_cols=35  Identities=23%  Similarity=0.275  Sum_probs=27.0

Q ss_pred             ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      .++.. .....+..+.|.|++|+||||+++.+.+..
T Consensus        28 ~l~~~-~~~~~~~~lll~G~~G~GKT~la~~~~~~~   62 (226)
T TIGR03420        28 ALRQL-AAGKGDRFLYLWGESGSGKSHLLQAACAAA   62 (226)
T ss_pred             HHHHH-HhcCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            34443 124667899999999999999999987654

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK13853 type IV secretion system protein VirB4; Provisional

Probab=94.52  E-value=0.042  Score=62.96  Aligned_cols=22  Identities=36%  Similarity=0.696  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcc
Q 010471          480 VVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      -++|+|+|||||||+++.|++.
T Consensus       428 ~~~I~G~tGsGKS~l~~~l~~~  449 (789)
T PRK13853        428 MTAIFGPIGRGKTTLMTFILAM  449 (789)
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999998753

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=94.51  E-value=0.037  Score=49.39  Aligned_cols=34  Identities=35%  Similarity=0.519  Sum_probs=28.9

Q ss_pred             eeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      +++|.+|.+-|+=||||||++|-+++-+.. +|+|
T Consensus        22 l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~-~~~V   55 (149)
T COG0802          22 LKAGDVVLLSGDLGAGKTTLVRGIAKGLGV-DGNV   55 (149)
T ss_pred             CCCCCEEEEEcCCcCChHHHHHHHHHHcCC-CCcc
Confidence            479999999999999999999999887765 4443

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=94.49  E-value=0.027  Score=58.38  Aligned_cols=51  Identities=20%  Similarity=0.257  Sum_probs=37.8

Q ss_pred             ccEEEEeeeEECCCCCCCCccc------------cceEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471          448 GHVQFVNISFHYPSRPTVPILN------------HVCLTIEANEVVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~------------nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      ....|+|++=-||..  +..|+            |.=+.|-+||...|||+.|+|||||++-+..
T Consensus       129 ~r~~f~~l~p~~p~~--R~~le~~~~~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian  191 (416)
T PRK09376        129 NRPLFENLTPLYPNE--RLRLETGNPEDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIAN  191 (416)
T ss_pred             CCCCcccCCCCChhh--cccccCCCCcccceeeeeeecccccCceEEEeCCCCCChhHHHHHHHH
Confidence            457788888778742  22332            2234677999999999999999999988765

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=94.49  E-value=0.03  Score=58.73  Aligned_cols=35  Identities=17%  Similarity=0.340  Sum_probs=27.6

Q ss_pred             ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      .++++.  +++++-+.|.||+||||||+++.+++...
T Consensus       170 ~~~~~G--l~~pkgvLL~GppGTGKT~LAkalA~~l~  204 (398)
T PTZ00454        170 LYEQIG--IDPPRGVLLYGPPGTGKTMLAKAVAHHTT  204 (398)
T ss_pred             HHHhcC--CCCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence            444443  45677899999999999999999987654

>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]

Probab=94.46  E-value=0.032  Score=56.40  Aligned_cols=30  Identities=30%  Similarity=0.450  Sum_probs=27.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcccCCCC
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSD  506 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s  506 (510)
                      .+.-+-|.|-+|||||||++.|++|-+|++
T Consensus       172 ~r~NILisGGTGSGKTTlLNal~~~i~~~e  201 (355)
T COG4962         172 IRCNILISGGTGSGKTTLLNALSGFIDSDE  201 (355)
T ss_pred             hceeEEEeCCCCCCHHHHHHHHHhcCCCcc
Confidence            345688999999999999999999999987

>PRK14974 cell division protein FtsY; Provisional

Probab=94.45  E-value=0.025  Score=57.95  Aligned_cols=29  Identities=28%  Similarity=0.461  Sum_probs=24.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPS  505 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~  505 (510)
                      ++.+++++|++|+||||.+.-|+..+...
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~  167 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN  167 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999888888776544

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=94.44  E-value=0.026  Score=59.87  Aligned_cols=34  Identities=18%  Similarity=0.309  Sum_probs=27.1

Q ss_pred             cccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       468 L~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      .+++.  +++++-+.|.||+|+||||+++.+++...
T Consensus       209 ~~~~g--i~~p~gVLL~GPPGTGKT~LAraIA~el~  242 (438)
T PTZ00361        209 YDDIG--IKPPKGVILYGPPGTGKTLLAKAVANETS  242 (438)
T ss_pred             HHhcC--CCCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence            44444  55677799999999999999999998643

>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]

Probab=94.35  E-value=0.026  Score=64.18  Aligned_cols=20  Identities=35%  Similarity=0.723  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 010471          480 VVAIVGLSGSGKSTFVNLLL  499 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~  499 (510)
                      -++|+|+||||||||+++|+
T Consensus       438 hT~I~G~tGaGKTvLl~~ll  457 (796)
T COG3451         438 HTLIIGPTGAGKTVLLSFLL  457 (796)
T ss_pred             CeEEECCCCCCHHHHHHHHH
Confidence            79999999999999998876

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=94.34  E-value=0.026  Score=58.64  Aligned_cols=35  Identities=26%  Similarity=0.320  Sum_probs=28.7

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCce
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ  508 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~  508 (510)
                      =+++|+.+.|.|++|+|||||+.-++.-+....|.
T Consensus        78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~  112 (372)
T cd01121          78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGK  112 (372)
T ss_pred             CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCe
Confidence            48899999999999999999998887655544343

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>cd01379 MYSc_type_III Myosin motor domain, type III myosins

Probab=94.29  E-value=0.024  Score=63.10  Aligned_cols=30  Identities=33%  Similarity=0.520  Sum_probs=27.3

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      +-.++|.+.|.|+|||||||..|+++++..
T Consensus        82 ~~~~~QsIiisGESGsGKTet~K~l~~yL~  111 (653)
T cd01379          82 TYNQDQCIVISGESGSGKTESAHLLVQQLT  111 (653)
T ss_pred             hcCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence            557889999999999999999999999863

Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=94.18  E-value=0.039  Score=53.12  Aligned_cols=35  Identities=23%  Similarity=0.293  Sum_probs=27.1

Q ss_pred             cccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       468 L~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +++..-....++.+.|.|++|+|||+|++.+.+-.
T Consensus        32 l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~   66 (227)
T PRK08903         32 LRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA   66 (227)
T ss_pred             HHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            44433334677889999999999999999998754

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=94.17  E-value=0.035  Score=59.17  Aligned_cols=27  Identities=37%  Similarity=0.555  Sum_probs=24.4

Q ss_pred             eeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          475 IEANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      +++|-+++|||++|+|||||++.|++-
T Consensus       200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~  226 (442)
T TIGR00450       200 LDDGFKLAIVGSPNVGKSSLLNALLKQ  226 (442)
T ss_pred             hhcCCEEEEECCCCCcHHHHHHHHhCC
Confidence            357789999999999999999999985

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>TIGR00416 sms DNA repair protein RadA

Probab=94.16  E-value=0.03  Score=59.86  Aligned_cols=32  Identities=25%  Similarity=0.261  Sum_probs=26.7

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS  505 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~  505 (510)
                      =+++|+.+.|.|++|+|||||+.-++.-....
T Consensus        90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~  121 (454)
T TIGR00416        90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKN  121 (454)
T ss_pred             CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence            58999999999999999999998776544333

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=94.13  E-value=0.041  Score=57.17  Aligned_cols=35  Identities=17%  Similarity=0.295  Sum_probs=26.0

Q ss_pred             ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      .++++.++-|  +-+.|.||+|+||||+++.+++-..
T Consensus       147 ~~~~~g~~~p--~gvLL~GppGtGKT~lakaia~~l~  181 (364)
T TIGR01242       147 LFEEVGIEPP--KGVLLYGPPGTGKTLLAKAVAHETN  181 (364)
T ss_pred             HHHhcCCCCC--ceEEEECCCCCCHHHHHHHHHHhCC
Confidence            3444444444  4499999999999999999987543

Many proteins may score above the trusted cutoff because an internal

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=94.12  E-value=0.066  Score=60.08  Aligned_cols=26  Identities=38%  Similarity=0.768  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHH-hcccCCC
Q 010471          480 VVAIVGLSGSGKSTFVNLL-LRLYEPS  505 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL-~g~y~p~  505 (510)
                      ++.|+|+|||||||+++.+ ..||...
T Consensus        30 ~~~i~G~Ng~GKttll~ai~~~LyG~~   56 (650)
T TIGR03185        30 IILIGGLNGAGKTTLLDAIQLALYGKR   56 (650)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence            8899999999999999887 5666543

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=94.02  E-value=0.035  Score=49.40  Aligned_cols=45  Identities=33%  Similarity=0.429  Sum_probs=33.4

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      .|.+..-+..|.++  +..++      .+|=++-|.|-|||||||++-.|.+.
T Consensus        10 NI~wh~~~v~k~eR--q~l~~------qkGcviWiTGLSgSGKStlACaL~q~   54 (207)
T KOG0635|consen   10 NITWHESSVTKEER--QKLLK------QKGCVIWITGLSGSGKSTLACALSQA   54 (207)
T ss_pred             ceeeecCCccHHHH--HHHhc------CCCcEEEEeccCCCCchhHHHHHHHH
Confidence            46666656666544  33444      58999999999999999999777654

>PRK08084 DNA replication initiation factor; Provisional

Probab=94.00  E-value=0.047  Score=53.10  Aligned_cols=26  Identities=15%  Similarity=0.243  Sum_probs=22.4

Q ss_pred             eeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471          475 IEANEVVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       475 I~~Ge~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      .+.+..+.|.||+|||||+|++.++.
T Consensus        42 ~~~~~~l~l~Gp~G~GKThLl~a~~~   67 (235)
T PRK08084         42 QEHSGYIYLWSREGAGRSHLLHAACA   67 (235)
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            45567899999999999999998774

>PRK12678 transcription termination factor Rho; Provisional

Probab=94.00  E-value=0.028  Score=60.69  Aligned_cols=52  Identities=19%  Similarity=0.263  Sum_probs=38.7

Q ss_pred             ccEEEEeeeEECCCCCCCCccc-----------cceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          448 GHVQFVNISFHYPSRPTVPILN-----------HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~-----------nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      ....|++++=-||..  +..|+           |.=+.|-+||...|||++|+|||||++-|+.-
T Consensus       377 ~r~~F~~Ltp~~P~~--R~~le~e~~~~giRvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~  439 (672)
T PRK12678        377 KRPEFGKLTPLYPNE--RLRLETEPKKLTTRVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANA  439 (672)
T ss_pred             cCCCcccCCCCChHH--hcccccCcccccceeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHH
Confidence            456777777777742  12222           34467889999999999999999999988773

>PRK06526 transposase; Provisional

Probab=93.96  E-value=0.04  Score=54.26  Aligned_cols=26  Identities=27%  Similarity=0.359  Sum_probs=22.6

Q ss_pred             eeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471          475 IEANEVVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       475 I~~Ge~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      ++.++-+.|+||+|+|||+|+.-|..
T Consensus        95 i~~~~nlll~Gp~GtGKThLa~al~~  120 (254)
T PRK06526         95 VTGKENVVFLGPPGTGKTHLAIGLGI  120 (254)
T ss_pred             hhcCceEEEEeCCCCchHHHHHHHHH
Confidence            36788999999999999999987753

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=93.95  E-value=0.044  Score=55.18  Aligned_cols=24  Identities=29%  Similarity=0.427  Sum_probs=21.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhccc
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      -++++||.+|+||||+++.|+|-.
T Consensus        39 ~rIllvGktGVGKSSliNsIlG~~   62 (313)
T TIGR00991        39 LTILVMGKGGVGKSSTVNSIIGER   62 (313)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999999843

>PF13245 AAA_19: Part of AAA domain

Probab=93.93  E-value=0.047  Score=43.20  Aligned_cols=26  Identities=23%  Similarity=0.471  Sum_probs=21.5

Q ss_pred             CCCEEEEEcCCCCcHH-HHHHHHhccc
Q 010471          477 ANEVVAIVGLSGSGKS-TFVNLLLRLY  502 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKS-TL~kLL~g~y  502 (510)
                      ++..+.|.|+.||||| |+++++..++
T Consensus         9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~   35 (76)
T PF13245_consen    9 GSPLFVVQGPPGTGKTTTLAARIAELL   35 (76)
T ss_pred             hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            4556667999999999 7888888877

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=93.88  E-value=0.038  Score=54.58  Aligned_cols=24  Identities=29%  Similarity=0.499  Sum_probs=20.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhccc
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      --+.+.||+|+||||+++++++.+
T Consensus        43 ~~vll~GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881        43 LHMIFKGNPGTGKTTVARILGKLF   66 (261)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHH
Confidence            357899999999999999998753

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=93.88  E-value=13  Score=41.21  Aligned_cols=12  Identities=17%  Similarity=0.307  Sum_probs=8.8

Q ss_pred             EEEEeeeEECCC
Q 010471          450 VQFVNISFHYPS  461 (510)
Q Consensus       450 I~f~nVsF~Y~~  461 (510)
                      -.++|++|.-+.
T Consensus       364 ~vL~~i~l~i~~  375 (588)
T PRK11174        364 TLAGPLNFTLPA  375 (588)
T ss_pred             eeeeeeEEEEcC
Confidence            358899998763

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=93.83  E-value=0.064  Score=61.69  Aligned_cols=34  Identities=29%  Similarity=0.469  Sum_probs=26.1

Q ss_pred             ceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471          471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP  504 (510)
Q Consensus       471 isltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p  504 (510)
                      +|+.....--++|+|+|||||||+++.|+..+.-
T Consensus       449 ~n~h~~d~g~~~i~G~tGsGKS~l~~~l~~~~~~  482 (818)
T PRK13830        449 LNLHVDDVGHTLIFGPTGSGKSTLLALIAAQFRR  482 (818)
T ss_pred             EEEEECCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence            3444444446899999999999999998877553

>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain

Probab=93.82  E-value=0.044  Score=54.25  Aligned_cols=33  Identities=15%  Similarity=0.317  Sum_probs=27.6

Q ss_pred             cceEEeeCCCEEEEEcCCCCcHHHH-HHHHhccc
Q 010471          470 HVCLTIEANEVVAIVGLSGSGKSTF-VNLLLRLY  502 (510)
Q Consensus       470 nisltI~~Ge~vAIVG~SGSGKSTL-~kLL~g~y  502 (510)
                      |.-+.|-+||+++|+|++|+||||| ++.+.+-.
T Consensus        61 D~l~pigrGQr~~Ifg~~g~GKt~L~l~~i~~~~   94 (274)
T cd01132          61 DAMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK   94 (274)
T ss_pred             eccCCcccCCEEEeeCCCCCCccHHHHHHHHHhc
Confidence            4457899999999999999999999 57776543

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.

>TIGR02012 tigrfam_recA protein RecA

Probab=93.81  E-value=0.049  Score=55.30  Aligned_cols=25  Identities=24%  Similarity=0.367  Sum_probs=22.0

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHH
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLL  498 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL  498 (510)
                      =+|+|..+-|.||+|||||||+--+
T Consensus        51 Glp~G~iteI~G~~GsGKTtLaL~~   75 (321)
T TIGR02012        51 GLPRGRIIEIYGPESSGKTTLALHA   75 (321)
T ss_pred             CCcCCeEEEEECCCCCCHHHHHHHH
Confidence            4899999999999999999996443

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	510
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		6e-39
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		1e-38
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		5e-36
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		5e-36
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		4e-23
3qf4_B	598	Crystal Structure Of A Heterodimeric Abc Transporte		8e-23
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		9e-23
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		1e-22
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		6e-22
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		2e-21
3qf4_A	587	Crystal Structure Of A Heterodimeric Abc Transporte		9e-18
1jj7_A	260	Crystal Structure Of The C-Terminal Atpase Domain O		2e-11
2ixe_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		3e-09
2ixg_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		3e-09
2ixf_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		3e-09
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		1e-08
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		1e-08
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		1e-08
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		1e-08
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		1e-08
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		1e-08
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		3e-08
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		6e-05
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		2e-04
2iwh_A	986	Structure Of Yeast Elongation Factor 3 In Complex W		3e-04
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		3e-04
3si7_A	285	The Crystal Structure Of The Nbd1 Domain Of The Mou		4e-04
1q3h_A	286	Mouse Cftr Nbd1 With Amp.Pnp Length = 286		4e-04
1xfa_A	283	Structure Of Nbd1 From Murine Cftr- F508r Mutant Le		4e-04
1xf9_A	283	Structure Of Nbd1 From Murine Cftr- F508s Mutant Le		4e-04
1r0z_A	286	Phosphorylated Cystic Fibrosis Transmembrane Conduc		4e-04
3dhw_C	343	Crystal Structure Of Methionine Importer Metni Leng		5e-04
3tui_C	366	Inward Facing Conformations Of The Metni Methionine		5e-04
3tuj_C	366	Inward Facing Conformations Of The Metni Methionine		6e-04
2iw3_A	986	Elongation Factor 3 In Complex With Adp Length = 98		6e-04
2ix8_A	976	Model For Eef3 Bound To An 80s Ribosome Length = 97		6e-04
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		7e-04

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score =  158 bits (400), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 177/313 (56%), Gaps = 7/313 (2%)
Query: 202 LVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAG 261
           +V RLR +L+S++L Q+V FFD    G L +RL++D   L   +  +++  LR   Q + 
Sbjct: 124 IVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASV 183
Query: 262 AFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMR 321
               +  +S  L    L +   +SII  +YG+Y ++ + +TQ+  A A  +A+E +  +R
Sbjct: 184 GISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVR 243
Query: 322 TVRVYGTEEKELGRYKIWLEKLAFIRIRESMAY-GLWNMSFITLYRSTQVMAVLL-GGMS 379
           TVR +G E  E+ +Y   ++ +  +  +E+ A  G +  +   L  +  V++VL  GG+ 
Sbjct: 244 TVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGAT--GLSGNLIVLSVLYKGGLL 301
Query: 380 IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE 439
           +    ++  +L+ +++Y  W+  +   +    S L++ +GA  ++++L++  P   F +E
Sbjct: 302 MGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPF-NE 360
Query: 440 GVKL--QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 497
           GV L  +   G ++F N+ F YP+RP VPI     L+I +  V A+VG SGSGKST ++L
Sbjct: 361 GVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSL 420
Query: 498 LLRLYEPSDGQVC 510
           LLRLY+P+ G + 
Sbjct: 421 LLRLYDPASGTIS 433

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score =  157 bits (398), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 177/313 (56%), Gaps = 7/313 (2%)
Query: 202 LVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAG 261
           +V RLR +L+S++L Q+V FFD    G L +RL++D   L   +  +++  LR   Q + 
Sbjct: 93  IVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASV 152
Query: 262 AFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMR 321
               +  +S  L    L +   +SII  +YG+Y ++ + +TQ+  A A  +A+E +  +R
Sbjct: 153 GISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVR 212
Query: 322 TVRVYGTEEKELGRYKIWLEKLAFIRIRESMAY-GLWNMSFITLYRSTQVMAVLL-GGMS 379
           TVR +G E  E+ +Y   ++ +  +  +E+ A  G +  +   L  +  V++VL  GG+ 
Sbjct: 213 TVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGAT--GLSGNLIVLSVLYKGGLL 270
Query: 380 IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE 439
           +    ++  +L+ +++Y  W+  +   +    S L++ +GA  ++++L++  P   F +E
Sbjct: 271 MGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPF-NE 329
Query: 440 GVKL--QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 497
           GV L  +   G ++F N+ F YP+RP VPI     L+I +  V A+VG SGSGKST ++L
Sbjct: 330 GVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSL 389
Query: 498 LLRLYEPSDGQVC 510
           LLRLY+P+ G + 
Sbjct: 390 LLRLYDPASGTIS 402

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score =  149 bits (375), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 45/352 (12%)
Query: 187 FSGLRSGCFSIANIVL----------VKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTA 236
           ++G+ +G   +A I +          + ++R+  + A++ Q++ +FD   VG L +RLT 
Sbjct: 114 YTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTD 173
Query: 237 DCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQK 296
           D  +++  IG+ I M  +      G FI   T  W LTL  L I   L +   ++ +   
Sbjct: 174 DVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILS 233
Query: 297 RASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKL------------- 343
             +       A A  VA+E L  +RTV  +G ++KEL RY   LE+              
Sbjct: 234 SFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANI 293
Query: 344 ----AFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 399
               AF+ I  S A   W  + + + +   +  VL    S++IG  S  Q +        
Sbjct: 294 SMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASP------- 346
Query: 400 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS-NQFLSEGVKLQRLMGHVQFVNISFH 458
                     N+ +   + GA  +VF++ID  PS + F   G K   + G+++F NI F 
Sbjct: 347 ----------NIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFS 396
Query: 459 YPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510
           YPSR  V IL  + L +++ + VA+VG SG GKST V L+ RLY+P DG V 
Sbjct: 397 YPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS 448

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score =  149 bits (375), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 45/352 (12%)
Query: 187 FSGLRSGCFSIANIVL----------VKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTA 236
           ++G+ +G   +A I +          + ++R+  + A++ Q++ +FD   VG L +RLT 
Sbjct: 114 YTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTD 173
Query: 237 DCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQK 296
           D  +++  IG+ I M  +      G FI   T  W LTL  L I   L +   ++ +   
Sbjct: 174 DVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILS 233
Query: 297 RASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKL------------- 343
             +       A A  VA+E L  +RTV  +G ++KEL RY   LE+              
Sbjct: 234 SFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANI 293
Query: 344 ----AFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 399
               AF+ I  S A   W  + + + +   +  VL    S++IG  S  Q +        
Sbjct: 294 SMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASP------- 346
Query: 400 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS-NQFLSEGVKLQRLMGHVQFVNISFH 458
                     N+ +   + GA  +VF++ID  PS + F   G K   + G+++F NI F 
Sbjct: 347 ----------NIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFS 396
Query: 459 YPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510
           YPSR  V IL  + L +++ + VA+VG SG GKST V L+ RLY+P DG V 
Sbjct: 397 YPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS 448

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score =  105 bits (263), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 163/354 (46%), Gaps = 51/354 (14%)
Query: 180 LCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQ 239
           L +  GI S + S C S  +  +V  +R  L+  ++   V FFD ++ G L SR+T D +
Sbjct: 74  LMILRGITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSE 133
Query: 240 RLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRAS 299
           ++++     +  ++R      G FI +   SW L++  +++   +SI + V  +  +  S
Sbjct: 134 QVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVSKRFRNIS 193
Query: 300 VLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRY-----KIWLEKLAFIRIRE---- 350
              Q         A++ L   + V ++G +E E  R+     ++ L+ +  +        
Sbjct: 194 KNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQGMKMVSASSISDP 253
Query: 351 --------SMAYGLWNMSFITLYRSTQVMAVLLGG-----MSIMIGQVSPEQLTKYVLYC 397
                   ++A+ L+  SF        VM  L  G      S MI  + P          
Sbjct: 254 IIQLIASLALAFVLYAASF------PSVMDSLTAGTITVVFSSMIALMRP---------- 297
Query: 398 EWLIYATWRMVDNLSSLLQ-SIGATEKVFQLIDLLPSNQFLSEGVK-LQRLMGHVQFVNI 455
                   + + N+++  Q  + A + +F ++D   S Q   EG + ++R  G V+F N+
Sbjct: 298 -------LKSLTNVNAQFQRGMAACQTLFTILD---SEQEKDEGKRVIERATGDVEFRNV 347
Query: 456 SFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +F YP R  VP L ++ L I A + VA+VG SGSGKST  +L+ R Y+  +G++
Sbjct: 348 TFTYPGRD-VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEI 400

>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598

Iteration: 1
 Score =  105 bits (261), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 143/309 (46%), Gaps = 3/309 (0%)
Query: 202 LVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAG 261
           +V RLR+ L+  L    V FFD    G + SR+  D   ++NV+GN I       +  AG
Sbjct: 108 VVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAG 167
Query: 262 AFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMR 321
           A I +  ++  L+L  L I     +I  +     ++     Q      N + +E +  + 
Sbjct: 168 AVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLT 227
Query: 322 TVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIM 381
            ++++  EEKE+ ++    E L  +  +  +  G+       +      +    GG   +
Sbjct: 228 VIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLAL 287
Query: 382 IGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGV 441
              ++   +  ++ Y          + +  + +  ++ + E++F+++D L   +   + V
Sbjct: 288 KDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILD-LEEEKDDPDAV 346
Query: 442 KLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501
           +L+ + G ++F N+ F Y  +   P+L  +   I+  + VA+VG +GSGK+T VNLL+R 
Sbjct: 347 ELREVRGEIEFKNVWFSYDKKK--PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF 404
Query: 502 YEPSDGQVC 510
           Y+   GQ+ 
Sbjct: 405 YDVDRGQIL 413

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score =  105 bits (261), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 159/341 (46%), Gaps = 14/341 (4%)
Query: 176 FLVL-LCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRL 234
           F++L L    G+     S C S  +  +V ++R  L++  +   V FFD E+ GGL SR+
Sbjct: 69  FMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRI 128
Query: 235 TADCQRLSNVIGNDINMILRNSLQGAGAFINLLTL----SWPLTLSALLICSFLSIIVSV 290
           T D ++++      +  I+R   +GA + I LLTL    SW L+L  +++   ++  +S 
Sbjct: 129 TYDSEQVAGATSRALVSIVR---EGA-SIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISF 184
Query: 291 YGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRE 350
             +  ++ S   Q    H  + A++ L   + V  YG +E E  R+      +    ++ 
Sbjct: 185 VSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKL 244
Query: 351 SMAYGLWNMSFITLYRSTQVMAVL-LGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVD 409
             A  + +   I +  S  + AVL L  +  +  +++P   T        L+     +  
Sbjct: 245 VSAQSIAD-PVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTS 303
Query: 410 NLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILN 469
             S   + + A + +F L+DL       +   + +R+ G V   +++F Y  +   P L+
Sbjct: 304 VTSEFQRGMAACQTLFGLMDLETERD--NGKYEAERVNGEVDVKDVTFTYQGKEK-PALS 360
Query: 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510
           HV  +I   + VA+VG SGSGKST  NL  R Y+   G +C
Sbjct: 361 HVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC 401

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 168/372 (45%), Gaps = 59/372 (15%)
Query: 170 FHKSSRFLVL--------LCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYF 221
           F K+ R ++L        L +  GI S + S C S  +  +V  +R  L+  ++   V F
Sbjct: 56  FGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAF 115
Query: 222 FDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLIC 281
           FD ++ G L SR+T D +++++     +  ++R      G FI +   SW L++  +++ 
Sbjct: 116 FDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLA 175
Query: 282 SFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRY----- 336
             +SI + V  +  +  S   Q         A++ L   + V ++G +E E  R+     
Sbjct: 176 PIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSN 235
Query: 337 KIWLEKLAFIRIRE------------SMAYGLWNMSFITLYRSTQVMAVLLGG-----MS 379
           K+ L+ +  +                ++A+ L+  SF        VM  L  G      S
Sbjct: 236 KMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASF------PSVMDSLTAGTITVVFS 289
Query: 380 IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQ-SIGATEKVFQLIDLLPSNQFLS 438
            MI  + P                  + + N+++  Q  + A + +F ++D   S Q   
Sbjct: 290 SMIALMRP-----------------LKSLTNVNAQFQRGMAACQTLFAILD---SEQEKD 329
Query: 439 EGVK-LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 497
           EG + + R  G ++F N++F YP R  VP L ++ L I A + VA+VG SGSGKST  +L
Sbjct: 330 EGKRVIDRATGDLEFRNVTFTYPGRE-VPALRNINLKIPAGKTVALVGRSGSGKSTIASL 388
Query: 498 LLRLYEPSDGQV 509
           + R Y+  +G +
Sbjct: 389 ITRFYDIDEGHI 400

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score =  102 bits (253), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 144/315 (45%), Gaps = 19/315 (6%)
Query: 205 RLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFI 264
           RLR     ++L Q++ +FDT   G L ++L  + +R+    G+ I M  +   Q    FI
Sbjct: 170 RLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFI 229
Query: 265 NLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVR 324
              T SW LTL  L +    ++      +     ++      A A  V +ET+  +RTV 
Sbjct: 230 VAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVV 289
Query: 325 VYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQ 384
                  EL RY   +E+     + + +  G+   SF  +  S  +   L     I +G 
Sbjct: 290 SLNGLRYELERYSTAVEEAKKAGVLKGLFLGI---SFGAMQASNFISFAL--AFYIGVGW 344
Query: 385 VSPEQLTKYVLYCEWLIYATWRMVDN---------LSSLLQSIGATEKVFQLIDLLPSNQ 435
           V    L     + + L   +  M+ +         L+ L  + GA   +++++D  P   
Sbjct: 345 VHDGSLN----FGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVID 400
Query: 436 FLSE-GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTF 494
             S+ G K  ++ G +   N+ F YPSRP VPIL  + L + A + VA+VG SG GKST 
Sbjct: 401 SSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTI 460
Query: 495 VNLLLRLYEPSDGQV 509
           ++LLLR Y+   G++
Sbjct: 461 ISLLLRYYDVLKGKI 475

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 144/312 (46%), Gaps = 15/312 (4%)
Query: 206 LRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFIN 265
           +R+ LY+ L      F+    VG + SR+  D ++  + I   +  I  + +    A   
Sbjct: 96  IRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSI 155
Query: 266 LLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRV 325
           +  L   LTL+AL I  F  + V V+    ++ +    +  A       E +  +  V+ 
Sbjct: 156 MFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKS 215
Query: 326 YGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNM-SFITLYRSTQVMAVLLGGMSIMI-- 382
           +  E+ E   +    +K     +  ++ +  WN  SF  +   T +  +++ G+   +  
Sbjct: 216 FAIEDNEAKNF----DKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAI 271
Query: 383 -GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGV 441
            G ++   L  +V Y E L     R+V + ++L QS  + ++VFQLID    +  +  GV
Sbjct: 272 SGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID---EDYDIKNGV 328
Query: 442 KLQRL---MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL 498
             Q +    G +   ++SF Y      PIL  + L+IE  E VA VG+SG GKST +NL+
Sbjct: 329 GAQPIEIKQGRIDIDHVSFQYNDNEA-PILKDINLSIEKGETVAFVGMSGGGKSTLINLI 387
Query: 499 LRLYEPSDGQVC 510
            R Y+ + GQ+ 
Sbjct: 388 PRFYDVTSGQIL 399

>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587

Iteration: 1
 Score = 88.2 bits (217), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 175/374 (46%), Gaps = 24/374 (6%)
Query: 148 EITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCF-SIANIVLVKRL 206
           +++ P +LA  V              +  L+L+    G   G+    F S A+      L
Sbjct: 39  DLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIGCTVFASYASQNFGADL 98
Query: 207 RETLYSALL---FQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAF 263
           R  L+  +L     +V  F T +   L +RLT D  +L N++   + +++R  L   G  
Sbjct: 99  RRDLFRKVLSFSISNVNRFHTSS---LITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGI 155
Query: 264 INLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVL---TQECNAHANNVAQETLCMM 320
           +  + +S  + LS++LI   +  IV ++    K+ + L    QE     N V +E L  +
Sbjct: 156 V--MAVSINVKLSSVLIF-LIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGV 212
Query: 321 RTVRVYGTEEKELGRYKIWLEKLAFIRIRESM--AYGLWNMS---FITLYRSTQVMAVLL 375
           R VR +  EE E   ++   E L     R S+  A+ L   +   FI +     +  +  
Sbjct: 213 RVVRAFRREEYENENFRKANESL-----RRSIISAFSLIVFALPLFIFIVNMGMIAVLWF 267
Query: 376 GGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 435
           GG+ +   Q+    +  Y  Y   ++++   + + L+ ++++  + ++V ++++  P+ +
Sbjct: 268 GGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIE 327
Query: 436 FLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFV 495
                + L  + G V F N+ F Y    T P+L+ V  +++   +VA++G +GSGKST +
Sbjct: 328 EADNALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLM 386
Query: 496 NLLLRLYEPSDGQV 509
           NL+ RL +P  G+V
Sbjct: 387 NLIPRLIDPERGRV 400

>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 43/64 (67%)
Query: 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505
           L G VQF ++SF YP+RP V +L  +  T+   EV A+VG +GSGKST   LL  LY+P+
Sbjct: 11  LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 506 DGQV 509
            GQ+
Sbjct: 71  GGQL 74

>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 42/64 (65%)
Query: 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505
           + G V+F ++SF YP+ P V +L  +  T+   +V A+VG +GSGKST   LL  LY+P+
Sbjct: 13  MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 506 DGQV 509
            G+V
Sbjct: 73  GGKV 76

>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 42/64 (65%)
Query: 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505
           + G V+F ++SF YP+ P V +L  +  T+   +V A+VG +GSGKST   LL  LY+P+
Sbjct: 13  MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 506 DGQV 509
            G+V
Sbjct: 73  GGKV 76

>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 42/64 (65%)
Query: 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505
           + G V+F ++SF YP+ P V +L  +  T+   +V A+VG +GSGKST   LL  LY+P+
Sbjct: 13  MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 506 DGQV 509
            G+V
Sbjct: 73  GGKV 76

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 450 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
           + F NI F Y  +P  P IL+++ L+I+  EV+ IVG SGSGKST   L+ R Y P +GQ
Sbjct: 2   ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 509 V 509
           V
Sbjct: 60  V 60

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 450 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
           + F NI F Y  +P  P IL+++ L+I+  EV+ IVG SGSGKST   L+ R Y P +GQ
Sbjct: 8   ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 509 V 509
           V
Sbjct: 66  V 66

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 450 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
           + F NI F Y  +P  P IL+++ L+I+  EV+ IVG SGSGKST   L+ R Y P +GQ
Sbjct: 2   ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 509 V 509
           V
Sbjct: 60  V 60

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 450 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
           + F NI F Y  +P  P IL+++ L+I+  EV+ IVG SGSGKST   L+ R Y P +GQ
Sbjct: 8   ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 509 V 509
           V
Sbjct: 66  V 66

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 450 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
           + F NI F Y  +P  P IL+++ L+I+  EV+ IVG SGSGKST   L+ R Y P +GQ
Sbjct: 8   ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 509 V 509
           V
Sbjct: 66  V 66

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 450 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
           + F NI F Y  +P  P IL+++ L+I+  EV+ IVG SGSGKST   L+ R Y P +GQ
Sbjct: 4   ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 61
Query: 509 V 509
           V
Sbjct: 62  V 62

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 450 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
           + F NI F Y  +P  P IL+++ L+I+  EV+ IVG +GSGKST   L+ R Y P +GQ
Sbjct: 4   ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQ 61
Query: 509 V 509
           V
Sbjct: 62  V 62

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 448 GHVQFVNISFHYPS-RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
           G ++F N+ F Y   R T   L  V  T+   + +A+VG SG+GKST + LL R Y+ S 
Sbjct: 52  GRIEFENVHFSYADGRET---LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISS 108
Query: 507 G 507
           G
Sbjct: 109 G 109

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 447 MGHVQFVNIS--FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 504
           MG ++ VN+S  FH  +      L +V L I   E + + G +GSGKST + ++  L EP
Sbjct: 2   MGRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP 61
Query: 505 SDGQV 509
           + G V
Sbjct: 62  TSGDV 66

>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 439 EGVKLQRLMGHVQFVNISFHYP--SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVN 496
           EGVK ++    V+  N+ F YP  S+P +  +N  C     +  +A++G +G+GKST +N
Sbjct: 662 EGVKTKQ-KAIVKVTNMEFQYPGTSKPQITDINFQC---SLSSRIAVIGPNGAGKSTLIN 717
Query: 497 LLLRLYEPSDGQV 509
           +L     P+ G+V
Sbjct: 718 VLTGELLPTSGEV 730

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503
           +++F +++F YP +     L  +   I +    A+VG +GSGKST   LL R Y+
Sbjct: 17  NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD 71

>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
           N+SF +      P+L ++ L IE  E++AI G +GSGK++ + L+L   E S+G
Sbjct: 40  NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG 93

>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
           N+SF +      P+L ++ L IE  E++AI G +GSGK++ + L+L   E S+G
Sbjct: 40  NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG 93

>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
           N+SF +      P+L ++ L IE  E++AI G +GSGK++ + L+L   E S+G
Sbjct: 40  NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG 93

>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
           N+SF +      P+L ++ L IE  E++AI G +GSGK++ + L+L   E S+G
Sbjct: 40  NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG 93

>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
           N+SF +      P+L ++ L IE  E++AI G +GSGK++ + L+L   E S+G
Sbjct: 40  NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG 93

>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 450 VQFVNIS--FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
           ++  NI+  FH  +R T+  LN+V L + A ++  ++G SG+GKST +  +  L  P++G
Sbjct: 2   IKLSNITKVFHQGTR-TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60
Query: 508 QV 509
            V
Sbjct: 61  SV 62

>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 450 VQFVNIS--FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
           ++  NI+  FH  +R T+  LN+V L + A ++  ++G SG+GKST +  +  L  P++G
Sbjct: 25  IKLSNITKVFHQGTR-TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 83
Query: 508 QV 509
            V
Sbjct: 84  SV 85

>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 450 VQFVNIS--FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
           ++  NI+  FH  +R T+  LN+V L + A ++  ++G SG+GKST +  +  L  P++G
Sbjct: 25  IKLSNITKVFHQGTR-TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 83
Query: 508 QV 509
            V
Sbjct: 84  SV 85

>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 439 EGVKLQRLMGHVQFVNISFHYP--SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVN 496
           EGVK ++    V+  N  F YP  S+P +  +N  C     +  +A++G +G+GKST +N
Sbjct: 662 EGVKTKQ-KAIVKVTNXEFQYPGTSKPQITDINFQC---SLSSRIAVIGPNGAGKSTLIN 717
Query: 497 LLLRLYEPSDGQV 509
           +L     P+ G+V
Sbjct: 718 VLTGELLPTSGEV 730

>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 439 EGVKLQRLMGHVQFVNISFHYP--SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVN 496
           EGVK ++    V+  N  F YP  S+P +  +N  C     +  +A++G +G+GKST +N
Sbjct: 656 EGVKTKQ-KAIVKVTNXEFQYPGTSKPQITDINFQC---SLSSRIAVIGPNGAGKSTLIN 711
Query: 497 LLLRLYEPSDGQV 509
           +L     P+ G+V
Sbjct: 712 VLTGELLPTSGEV 724

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510
           ++ F Y    +  IL  +    + N ++A  G SG GKST  +LL R Y+P+ G++ 
Sbjct: 6   HVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	510
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	1e-103
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	3e-74
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	2e-72
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	5e-66
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	3e-70
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	3e-65
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	1e-46
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	4e-36
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	6e-30
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	6e-23
2ghi_A	260	Transport protein; multidrug resistance protein, M	5e-22
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	3e-21
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	4e-21
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	8e-12
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	4e-11
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	6e-11
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	1e-10
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	2e-10
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	3e-10
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	6e-10
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	8e-10
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	1e-08
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	2e-09
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	7e-05
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	2e-09
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	5e-07
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	4e-09
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	1e-08
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	4e-05
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	5e-08
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	2e-07
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	2e-07
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	3e-07
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	7e-07
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	7e-07
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	8e-07
1b0u_A	262	Histidine permease; ABC transporter, transport pro	9e-07
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	1e-06
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	2e-06
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	3e-06
1g6h_A	257	High-affinity branched-chain amino acid transport	4e-06
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	1e-05
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	1e-05
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	2e-05
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	2e-05
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	3e-05
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	3e-05
1sgw_A	214	Putative ABC transporter; structural genomics, P p	4e-05
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	2e-04
1ji0_A	240	ABC transporter; ATP binding protein, structural g	5e-04

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score =  244 bits (625), Expect = 3e-74
 Identities = 89/405 (21%), Positives = 176/405 (43%), Gaps = 8/405 (1%)

Query: 109 PTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAV---FSAQRE 165
              K ++ W    R+W  I   K  ++VA  +LI+ A S+  M  +L   +   F     
Sbjct: 2   HNDKDLSTWQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDR 61

Query: 166 EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTE 225
             +++      ++ L +  GI S + S C S  +  +V  +R  L+  ++   V FFD +
Sbjct: 62  SVLLW--MPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ 119

Query: 226 AVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLS 285
           + G L SR+T D +++++     +  ++R      G FI +   SW L++  +++   +S
Sbjct: 120 STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVS 179

Query: 286 IIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAF 345
           I + V  +  +  S   Q         A++ L   + V ++G +E E  R+     K+  
Sbjct: 180 IAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRL 239

Query: 346 IRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATW 405
             ++   A  + +     +        +       ++  ++   +T        L+    
Sbjct: 240 QGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLK 299

Query: 406 RMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTV 465
            + +  +   + + A + +F ++D             + R  G ++F N++F YP R   
Sbjct: 300 SLTNVNAQFQRGMAACQTLFAILDSEQEKD--EGKRVIDRATGDLEFRNVTFTYPGREV- 356

Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510
           P L ++ L I A + VA+VG SGSGKST  +L+ R Y+  +G + 
Sbjct: 357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 401

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score =  249 bits (637), Expect = 2e-72
 Identities = 96/335 (28%), Positives = 166/335 (49%), Gaps = 1/335 (0%)

Query: 176 FLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLT 235
           +   +     I + ++   + +A    + ++R+  + A++ Q++ +FD   VG L +RLT
Sbjct: 113 YYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLT 172

Query: 236 ADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQ 295
            D  +++  IG+ I M  +      G FI   T  W LTL  L I   L +   ++ +  
Sbjct: 173 DDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKIL 232

Query: 296 KRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG 355
              +       A A  VA+E L  +RTV  +G ++KEL RY   LE+   + I++++   
Sbjct: 233 SSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITAN 292

Query: 356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLL 415
           +   +   L  ++  +A   G   ++  + S  Q+           ++  +   N+ +  
Sbjct: 293 ISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFA 352

Query: 416 QSIGATEKVFQLIDLLPS-NQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLT 474
            + GA  +VF++ID  PS + F   G K   + G+++F NI F YPSR  V IL  + L 
Sbjct: 353 NARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLK 412

Query: 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +++ + VA+VG SG GKST V L+ RLY+P DG V
Sbjct: 413 VKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score =  230 bits (589), Expect = 5e-66
 Identities = 98/424 (23%), Positives = 177/424 (41%), Gaps = 22/424 (5%)

Query: 101  SDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEA-- 158
             D + +            +  R+  L   +    +V +   I+    +     I ++   
Sbjct: 674  QDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVG 733

Query: 159  VFSAQREEAMVFHKSSRF---LVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALL 215
            VF+           S+ F    ++L + S I   L+   F  A  +L KRLR  ++ ++L
Sbjct: 734  VFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSML 793

Query: 216  FQDVYFFDTE--AVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPL 273
             QDV +FD      G LT+RL  D  ++    G+ + +I +N        I  L   W L
Sbjct: 794  RQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQL 853

Query: 274  TLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKEL 333
            TL  L I   ++I   V  +     ++  ++    +  +A E +   RTV     E+K  
Sbjct: 854  TLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFE 913

Query: 334  GRYKIWLEKLAFIRIRESMAYGLWN-MSFITLYRSTQVMAVLL--GGMSIMIGQVSPEQL 390
              Y   L+      ++++  +G+    +   +Y      A     G   +    ++ E +
Sbjct: 914  TMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMY---FSYAAAFRFGAYLVTQQLMTFENV 970

Query: 391  TKYVLYCEWLIYATWRMVDNLSSLLQSIG----ATEKVFQLIDLLPSNQFLS-EGVKLQR 445
                     +++     V  +SS          +   + ++I+  P     S +G+K   
Sbjct: 971  LLVFSA---IVFGAM-AVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNM 1026

Query: 446  LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505
            L G+VQF  + F+YP+RP++P+L  + L ++  + +A+VG SG GKST V LL R Y+P 
Sbjct: 1027 LEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM 1086

Query: 506  DGQV 509
             G V
Sbjct: 1087 AGSV 1090

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score =  234 bits (598), Expect = 3e-70
 Identities = 93/407 (22%), Positives = 177/407 (43%), Gaps = 12/407 (2%)

Query: 109 PTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAV---FSAQRE 165
                 + W    R+W  I   K  ++V+  +L++ A ++  M  +L   +   F     
Sbjct: 2   SLHSDESNWQTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAES 61

Query: 166 EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTE 225
             +        ++ L    G+     S C S  +  +V ++R  L++  +   V FFD E
Sbjct: 62  NFLRI--LPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQE 119

Query: 226 AVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLS 285
           + GGL SR+T D ++++      +  I+R      G    +   SW L+L  +++   ++
Sbjct: 120 STGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVA 179

Query: 286 IIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAF 345
             +S   +  ++ S   Q    H  + A++ L   + V  YG +E E  R+      +  
Sbjct: 180 FAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQ 239

Query: 346 IRIRESMAYGLWNMSFITLYRSTQVMAVL-LGGMSIMIGQVSPEQLTKYVLYCEWLIYAT 404
             ++   A  +     I +  S  + AVL L  +  +  +++P   T       + +   
Sbjct: 240 QTMKLVSAQSI-ADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAM-FGLMRP 297

Query: 405 WRMVDNLSSLLQS-IGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRP 463
            + + +++S  Q  + A + +F L+DL       +   + +R+ G V   +++F Y  + 
Sbjct: 298 LKALTSVTSEFQRGMAACQTLFGLMDLETERD--NGKYEAERVNGEVDVKDVTFTYQGKE 355

Query: 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510
             P L+HV  +I   + VA+VG SGSGKST  NL  R Y+   G +C
Sbjct: 356 K-PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC 401

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score =  220 bits (563), Expect = 3e-65
 Identities = 81/398 (20%), Positives = 161/398 (40%), Gaps = 9/398 (2%)

Query: 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAV--------FSAQREEAMVFH 171
           + R    +   K+ +   +   I+     + +P ++  A+         +   +   +  
Sbjct: 2   IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTI 61

Query: 172 KSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLT 231
                L +  +       +R       +  ++  +R+ LY+ L      F+    VG + 
Sbjct: 62  AIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVI 121

Query: 232 SRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVY 291
           SR+  D ++  + I   +  I  + +    A   +  L   LTL+AL I  F  + V V+
Sbjct: 122 SRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181

Query: 292 GQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRES 351
               ++ +    +  A       E +  +  V+ +  E+ E   +           ++ +
Sbjct: 182 FGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241

Query: 352 MAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNL 411
                   +  T+     ++ + +G    + G ++   L  +V Y E L     R+V + 
Sbjct: 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASF 301

Query: 412 SSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHV 471
           ++L QS  + ++VFQLID     +       ++   G +   ++SF Y      PIL  +
Sbjct: 302 TTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEA-PILKDI 360

Query: 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
            L+IE  E VA VG+SG GKST +NL+ R Y+ + GQ+
Sbjct: 361 NLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI 398

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score =  170 bits (433), Expect = 1e-46
 Identities = 82/406 (20%), Positives = 174/406 (42%), Gaps = 12/406 (2%)

Query: 109 PTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAV--FSAQREE 166
                      L R+   +    + +++    + V+++  +  P ++ + +      R  
Sbjct: 14  EKPALKNPTATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRF 73

Query: 167 AMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEA 226
            ++       L  +   + +   L+       +  +V RLR+ L+  L    V FFD   
Sbjct: 74  DLLPRYML-ILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTP 132

Query: 227 VGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSI 286
            G + SR+  D   ++NV+GN I       +  AGA I +  ++  L+L  L I     +
Sbjct: 133 HGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVL 192

Query: 287 IVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFI 346
           I  +     ++     Q      N + +E +  +  ++++  EEKE+ ++    E L  +
Sbjct: 193 ITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKV 252

Query: 347 RIRESMAYGLWN--MSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYAT 404
             +  +  G+    M+ +        +    GG   +   ++   +  ++ Y        
Sbjct: 253 GTKAQIFSGVLPPLMNMVN--NLGFALISGFGGWLALKDIITVGTIATFIGYS-RQFTRP 309

Query: 405 WRMVDNLSSLLQS-IGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRP 463
              + N  +++Q  + + E++F+++D L   +   + V+L+ + G ++F N+ F Y    
Sbjct: 310 LNELSNQFNMIQMALASAERIFEILD-LEEEKDDPDAVELREVRGEIEFKNVWFSY--DK 366

Query: 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
             P+L  +   I+  + VA+VG +GSGK+T VNLL+R Y+   GQ+
Sbjct: 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI 412

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score =  140 bits (355), Expect = 4e-36
 Identities = 81/406 (19%), Positives = 174/406 (42%), Gaps = 32/406 (7%)

Query: 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVF-HKSSRFLV 178
              +   +       ++A   ++V  + +++ P +LA  V             K+   ++
Sbjct: 11  SKTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILML 70

Query: 179 LLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALL---FQDVYFFDTEAVGGLTSRLT 235
           ++ +   +     +   S A+      LR  L+  +L     +V  F T     L +RLT
Sbjct: 71  IVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHT---SSLITRLT 127

Query: 236 ADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSV----- 290
            D  +L N++   + +++R  L   G  +  ++++  L+   + +   + ++        
Sbjct: 128 NDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKG 187

Query: 291 ---YGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLA--F 345
              + + Q+    +        N V +E L  +R VR +  EE E   ++   E L    
Sbjct: 188 NPLFRKIQESTDEV--------NRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSI 239

Query: 346 IRIRESMAYGLWNMSFITLYRSTQVMAVL-LGGMSIMIGQVSPEQLTKYVLYCEWLIYAT 404
           I     +    + +       +  ++AVL  GG+ +   Q+    +  Y  Y    I  +
Sbjct: 240 ISAFSLIV---FALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYL-MQIMFS 295

Query: 405 WRMVDNLSSLL-QSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRP 463
             M+ N+ + + ++  + ++V ++++  P+ +     + L  + G V F N+ F Y    
Sbjct: 296 LMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFE-N 354

Query: 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           T P+L+ V  +++   +VA++G +GSGKST +NL+ RL +P  G+V
Sbjct: 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRV 400

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score =  117 bits (295), Expect = 6e-30
 Identities = 30/73 (41%), Positives = 45/73 (61%)

Query: 437 LSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVN 496
           LS  +    + G V+F ++SF YP+ P V +L  +  T+   +V A+VG +GSGKST   
Sbjct: 4   LSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAA 63

Query: 497 LLLRLYEPSDGQV 509
           LL  LY+P+ G+V
Sbjct: 64  LLQNLYQPTGGKV 76

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 96.8 bits (242), Expect = 6e-23
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 444 QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503
                 + F NI F Y       IL+++ L+I+  EV+ IVG SGSGKST   L+ R Y 
Sbjct: 2   HHHHHDITFRNIRFRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60

Query: 504 PSDGQV 509
           P +GQV
Sbjct: 61  PENGQV 66

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 94.6 bits (236), Expect = 5e-22
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 438 SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 497
           S     ++   +++F +++F YP +     L  +   I +    A+VG +GSGKST   L
Sbjct: 6   SLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKL 65

Query: 498 LLRLYEPS-----DGQ 508
           L R Y+        G+
Sbjct: 66  LYRFYDAEGDIKIGGK 81

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 91.8 bits (229), Expect = 3e-21
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +   ++ F Y       IL  +    + N ++A  G SG GKST  +LL R Y+P+ G++
Sbjct: 2   LSARHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 93.1 bits (232), Expect = 4e-21
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 2/94 (2%)

Query: 416 QSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTI 475
                 E +F L+      + L     L+   G ++F N+ F Y        L  V  T+
Sbjct: 20  HMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSY--ADGRETLQDVSFTV 77

Query: 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
              + +A+VG SG+GKST + LL R Y+ S G +
Sbjct: 78  MPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI 111

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 64.9 bits (159), Expect = 8e-12
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           ++   ++++Y        L  + + I+  EV AI+G +G GKST       + +PS G++
Sbjct: 8   LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 62.6 bits (153), Expect = 4e-11
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 450 VQFVNISFHYPSRPT--VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
           ++ VN+S  +          L +V L I   E + + G +GSGKST + ++  L EP+ G
Sbjct: 3   IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62

Query: 508 QV 509
            V
Sbjct: 63  DV 64

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 61.4 bits (150), Expect = 6e-11
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           ++  NI           IL  + L+++  E V+I+G SGSGKST + +L  L  P++G+V
Sbjct: 5   LRAENIKKVIR---GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV 61

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 60.6 bits (148), Expect = 1e-10
 Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 450 VQFVNISFHYPS-RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
           V+  N++  Y      +  L +V L I+  E V+I+G SGSGKST +N++  L +P++G+
Sbjct: 2   VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61

Query: 509 V 509
           V
Sbjct: 62  V 62

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +Q   I      +    IL  +   I   +   + GL+G+GK+T +N+L      + G V
Sbjct: 22  IQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score = 61.3 bits (149), Expect = 3e-10
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 448 GHVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505
           G +   +++  Y        IL ++  +I   + V ++G +GSGKST ++  LRL    
Sbjct: 18  GQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE 74

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 58.7 bits (143), Expect = 6e-10
 Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           N+ F+Y +     +   +   +   +++A++G +G GKST ++LLL ++ P  G++
Sbjct: 9   NLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 60.4 bits (147), Expect = 8e-10
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 437 LSEGVKLQRLMGHVQFVNISFHYPS---RPTVPILNHVCLTIEANEVVAIVGLSGSGKST 493
           L   +            + +F YPS        +LN        +E++ ++G +G+GK+T
Sbjct: 334 LQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTT 393

Query: 494 FVNLLLRLYEPSDGQV 509
            + LL    +P +GQ 
Sbjct: 394 LIKLLAGALKPDEGQD 409

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +++  Y +        H   T    +V+ +VG +G GKST + +L    +P+ G+ 
Sbjct: 82  HVTHRYSA---NSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
            V +  +   Y S      L      I+  EV+ IVG +G GK+TFV +L  + EP++G+
Sbjct: 287 LVTYPRLVKDYGSF----RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 342

Query: 509 V 509
           +
Sbjct: 343 I 343

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 504
            +    Y        + +    ++   VV IVG +G+GKST V +L     P
Sbjct: 25  EDCVHRYGVNA---FVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIP 73

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
            V++  +   Y S      L      I   EV+ IVG +G GK+TFV +L  + EP++G+
Sbjct: 357 LVEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 412

Query: 509 V 509
           V
Sbjct: 413 V 413

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 51.5 bits (124), Expect = 5e-07
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 450 VQFVNISFHYPSRPT-----VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 504
           +  VN+                 + +    ++   VV IVG +G+GK+T V +L     P
Sbjct: 84  ISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIP 143

Query: 505 SDGQV 509
           +  + 
Sbjct: 144 NLCED 148

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 450 VQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
           ++  NI+  +     T+  LN+V L + A ++  ++G SG+GKST +  +  L  P++G 
Sbjct: 25  IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84

Query: 509 V 509
           V
Sbjct: 85  V 85

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
            L       +  E++ I+G +G GK+TF  +L+      +G V
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSV 325

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 10/36 (27%), Positives = 20/36 (55%)

Query: 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           T + N ++ ++G +G GK+T + +L     P+ G  
Sbjct: 21  TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP 56

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 450 VQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
           +Q  N+      +      L ++ L +   E V I+G +GSGK+T +  +  L  P  G 
Sbjct: 2   IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGL-LPYSGN 59

Query: 509 V 509
           +
Sbjct: 60  I 60

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 15/62 (24%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
             V   N++  +      P+L  +   IE  +++A+ G +G+GK++ + +++   EPS+G
Sbjct: 5   TEVVMENVTAFW-EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63

Query: 508 QV 509
           ++
Sbjct: 64  KI 65

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
           M  +   N +F + +R   P LN +  +I    +VA+VG  G GKS+ ++ LL   +  +
Sbjct: 1   MNSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE 59

Query: 507 GQV 509
           G V
Sbjct: 60  GHV 62

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 50.6 bits (122), Expect = 3e-07
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
             L  +   + A E++ +VG +G+GKST +  +  +     G +
Sbjct: 14  TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSI 56

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 16/56 (28%), Positives = 35/56 (62%)

Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           ++SF   S    P+L  +   IE  +++A+ G +G+GK++ + +++   EPS+G++
Sbjct: 40  SLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 95

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 50.3 bits (121), Expect = 7e-07
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
           M  +   N+S  +     V  L++V + IE  E   I+G SG+GK+TF+ ++  L  PS 
Sbjct: 1   MVRIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST 59

Query: 507 GQV 509
           G++
Sbjct: 60  GEL 62

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 50.8 bits (121), Expect = 8e-07
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           N+ F YP     P +  +      +  +A++G +G+GKST +N+L     P+ G+V
Sbjct: 676 NMEFQYPGTSK-PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score = 49.5 bits (119), Expect = 9e-07
 Identities = 19/43 (44%), Positives = 29/43 (67%)

Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +L  V L   A +V++I+G SGSGKSTF+  +  L +PS+G +
Sbjct: 21  VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 63

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 11/67 (16%)

Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LY 502
           M  ++  NI   + +      LN++ L I+  E +A++G SGSGKST    LL     +Y
Sbjct: 1   MVEIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKST----LLYTIAGIY 53

Query: 503 EPSDGQV 509
           +P+ G++
Sbjct: 54  KPTSGKI 60

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +L  + + I   EVV ++G SGSGKSTF+  L  L +  +G++
Sbjct: 39  VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 10/64 (15%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LYEPS 505
           ++FV +   YP       +  V   I   E+V ++G SGSGK+T    +LR    L  P+
Sbjct: 15  IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTT----ILRLIAGLERPT 68

Query: 506 DGQV 509
            G V
Sbjct: 69  KGDV 72

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 47.5 bits (114), Expect = 4e-06
 Identities = 14/42 (33%), Positives = 27/42 (64%)

Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           L+ V +++   +V  I+G +GSGKST +N++    +  +G+V
Sbjct: 23  LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 64

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 11/65 (16%)

Query: 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LYEP 504
            +   ++S  + +    P+LN + L+++  E++ I+G SG GK+T    LLR      +P
Sbjct: 4   ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTT----LLRCLAGFEQP 56

Query: 505 SDGQV 509
             G++
Sbjct: 57  DSGEI 61

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQV 509
            IL  V L +   EV A++G +G+GKST   +L     Y    G++
Sbjct: 17  TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEI 62

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQV 509
            IL  + L +   EV AI+G +GSGKST    L     YE + G V
Sbjct: 34  AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV 79

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 11/67 (16%)

Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LY 502
           M  ++ VN+  ++     V  ++ V   ++  E VA++G SG GK+T     L     +Y
Sbjct: 1   MPSIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTT----TLLMLAGIY 53

Query: 503 EPSDGQV 509
           +P+ G++
Sbjct: 54  KPTSGEI 60

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 11/67 (16%)

Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LY 502
           M  V+ V++   +     V  ++   L ++  E + ++G SG GK+T     LR    L 
Sbjct: 1   MAGVRLVDVWKVFGEVTAVREMS---LEVKDGEFMILLGPSGCGKTT----TLRMIAGLE 53

Query: 503 EPSDGQV 509
           EPS GQ+
Sbjct: 54  EPSRGQI 60

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 11/67 (16%)

Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LY 502
           M  V+  N++  + +      +N + LTI+  E + ++G SG GK+T     LR    L 
Sbjct: 9   MVEVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTT----TLRMIAGLE 61

Query: 503 EPSDGQV 509
           EP++G++
Sbjct: 62  EPTEGRI 68

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 43.7 bits (104), Expect = 4e-05
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           L  + +TIE   VV   G +G GK+T +  +    +P  G++
Sbjct: 25  LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381

 Score = 43.7 bits (104), Expect = 9e-05
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 11/67 (16%)

Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LY 502
           M  VQ  N++  +     V +   + L I   E V  VG SG GKST    LLR    L 
Sbjct: 1   MASVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKST----LLRMIAGLE 53

Query: 503 EPSDGQV 509
             + G +
Sbjct: 54  TITSGDL 60

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 29/152 (19%), Positives = 49/152 (32%), Gaps = 51/152 (33%)

Query: 388 EQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLM 447
           + + K +L        +   +D++   + S  A     +L   L S Q   E V  Q+ +
Sbjct: 39  QDMPKSIL--------SKEEIDHI---IMSKDAVSGTLRLFWTLLSKQ--EEMV--QKFV 83

Query: 448 GHVQFVNISFHY---------PSRPTV-------PILN--------HVC----------- 472
             V  +N  F           PS  T         + N        +V            
Sbjct: 84  EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143

Query: 473 -LTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503
            L +   + V I G+ GSGK+     +   Y+
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 9e-04
 Identities = 62/442 (14%), Positives = 129/442 (29%), Gaps = 110/442 (24%)

Query: 88  IRQVFPGGSWWNLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVS 147
           ++       +W L+           P TV   L ++   I  +        +++ +   S
Sbjct: 176 VQCKMDFKIFW-LNLKNCNS-----PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 148 EITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCV-TSGIFSGLRSGCFSIANIVLVKRL 206
                R L      ++       +++   LVLL V  +  ++     C     I+L  R 
Sbjct: 230 IQAELRRL----LKSKP------YENC-LLVLLNVQNAKAWNAFNLSC----KILLTTRF 274

Query: 207 RETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINL 266
           ++           +         LT         L   +      + R  L         
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSL--LLKYLDCRPQDLPREVLTTN------ 326

Query: 267 LTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVY 326
                P  LS  +I   +   ++ +  ++                V  + L  +    + 
Sbjct: 327 -----PRRLS--IIAESIRDGLATWDNWKH---------------VNCDKLTTIIESSLN 364

Query: 327 GTEEKELGRYKIWLEKLA-F---IRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMI 382
             E  E  +     ++L+ F     I   +   +W      +     V+   L   S++ 
Sbjct: 365 VLEPAEYRKM---FDRLSVFPPSAHIPTILLSLIWFDV---IKSDVMVVVNKLHKYSLVE 418

Query: 383 GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGA---TEKVFQLIDLLPSN----- 434
            Q     ++   +Y E         ++N  +L +SI       K F   DL+P       
Sbjct: 419 KQPKESTISIPSIYLELK-----VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473

Query: 435 -QFL---------SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIV 484
              +          E + L R++    F++  F                 +E    +   
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMV----FLDFRF-----------------LEQK--IRHD 510

Query: 485 GLSGSGKSTFVNLL--LRLYEP 504
             + +   + +N L  L+ Y+P
Sbjct: 511 STAWNASGSILNTLQQLKFYKP 532

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 13/64 (20%), Positives = 31/64 (48%), Gaps = 12/64 (18%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LYEPS 505
           ++  ++S  + +      L+++ L +E+ E   I+G +G+GK+      L      + P 
Sbjct: 2   IEIESLSRKWKNF----SLDNLSLKVESGEYFVILGPTGAGKTL----FLELIAGFHVPD 53

Query: 506 DGQV 509
            G++
Sbjct: 54  SGRI 57

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 40.9 bits (97), Expect = 5e-04
 Identities = 10/56 (17%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           ++  +Y +   +  +  + L +   ++V ++G +G+GK+T ++ +  L     G++
Sbjct: 11  SLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	510
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	100.0
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	100.0
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	100.0
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.82
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.68
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.66
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.65
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.64
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.64
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.64
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.63
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.63
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.61
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.61
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.6
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.6
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.6
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.6
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.59
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.59
1g6h_A	257	High-affinity branched-chain amino acid transport	99.59
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.59
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.58
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.57
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.57
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.57
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.56
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.55
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.55
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.55
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.54
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.54
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.52
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.52
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.51
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.51
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.5
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.48
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.47
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.37
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.36
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.23
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.22
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.18
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.16
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.14
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.11
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.06
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.06
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.04
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	98.97
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.95
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.95
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	98.95
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.94
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.92
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.89
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.87
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.81
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.76
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.73
3ice_A	422	Transcription termination factor RHO; transcriptio	98.72
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.69
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.66
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.65
2og2_A	359	Putative signal recognition particle receptor; nuc	98.64
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.64
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.6
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.59
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.58
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.54
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.52
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	98.52
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.5
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.5
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.5
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.48
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.47
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.41
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.38
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.38
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.35
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.34
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.32
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	98.29
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	98.26
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.22
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	98.22
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	98.21
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.16
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.09
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.06
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.05
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.03
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.01
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.01
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.98
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.95
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	97.95
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.94
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.94
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	97.93
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	97.93
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.91
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.87
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.85
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.84
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.82
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.76
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.69
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.61
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.59
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	97.59
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.5
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.49
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.46
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.46
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.45
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.43
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.35
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.34
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.32
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.3
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.24
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.21
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.12
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.06
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.93
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.91
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	96.9
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.74
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.68
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	96.66
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.65
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	96.63
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.59
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.57
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.49
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.47
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	96.44
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	96.4
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.38
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.26
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.16
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.15
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.02
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.0
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	95.97
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.96
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.93
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.92
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.88
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.88
3l0o_A	427	Transcription termination factor RHO; helicase, RH	95.77
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.73
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	95.58
3bos_A	242	Putative DNA replication factor; P-loop containing	95.5
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.47
2z43_A	324	DNA repair and recombination protein RADA; archaea	95.46
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.44
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	95.43
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	95.37
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	95.37
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.33
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.26
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	95.22
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	95.16
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.15
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.14
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	95.1
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	95.09
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	95.09
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	95.06
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	95.05
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	95.02
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.01
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	95.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	94.97
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	94.91
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	94.9
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	94.89
2hf9_A	226	Probable hydrogenase nickel incorporation protein	94.89
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	94.88
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	94.86
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	94.73
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	94.63
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.63
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	94.62
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	94.59
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	94.57
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	94.55
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	94.43
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	94.26
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	94.26
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	94.23
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	94.21
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	94.2
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	94.04
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	93.96
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	93.93
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	93.91
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	93.89
1u94_A	356	RECA protein, recombinase A; homologous recombinat	93.88
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	93.81
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	93.77
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	93.7
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	92.69
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	93.54
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	93.52
3co5_A	143	Putative two-component system transcriptional RES	93.49
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	93.45
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	93.39
2chg_A	226	Replication factor C small subunit; DNA-binding pr	93.38
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	93.29
3pvs_A	447	Replication-associated recombination protein A; ma	93.24
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	93.2
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	93.19
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	93.16
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	93.15
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	93.14
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	93.08
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	93.08
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	93.08
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	92.94
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	92.89
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	92.87
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	92.86
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	92.84
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	92.81
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	92.81
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	92.79
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	92.79
1tue_A	212	Replication protein E1; helicase, replication, E1E	92.77
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	92.76
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	92.69
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	92.66
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	92.58
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	92.5
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	92.49
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	92.49
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	92.43
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	92.38
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	92.37
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	92.32
1xp8_A	366	RECA protein, recombinase A; recombination, radior	92.29
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	92.29
3io5_A	333	Recombination and repair protein; storage dimer, i	92.28
2qgz_A	308	Helicase loader, putative primosome component; str	92.19
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	92.12
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	92.12
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	92.03
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	91.97
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	91.92
1j3b_A	529	ATP-dependent phosphoenolpyruvate carboxykinase; a	91.83
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	91.72
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	91.65
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	91.61
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	91.46
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	91.34
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	91.18
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	91.16
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	91.16
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	91.13
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	91.05
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	90.95
3gqb_A	578	V-type ATP synthase alpha chain; A3B3, V-ATPase, A	90.94
2olr_A	540	Phosphoenolpyruvate carboxykinase; carbon dioxide,	90.91
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	90.83
3vr4_A	600	V-type sodium ATPase catalytic subunit A; V-ATPase	90.69
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	90.58
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	90.53
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	90.49
1ii2_A	524	Phosphoenolpyruvate carboxykinase; phosphate bindi	90.47
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	90.42
2r44_A	331	Uncharacterized protein; putative ATPase, structur	90.4
2xxa_A	433	Signal recognition particle protein; protein trans	89.97
1ytm_A	532	Phosphoenolpyruvate carboxykinase [ATP], phosphoen	89.94
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	89.92
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	89.82
2fna_A	357	Conserved hypothetical protein; structural genomic	89.74
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	89.71
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	89.69
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	89.59
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	89.39
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	89.29
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	89.22
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	89.18
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	89.13
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	89.08
1e9r_A	437	Conjugal transfer protein TRWB; coupling protein,	89.05
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	88.92
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	88.84
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	88.79
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	88.75
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	88.49
2qe7_A	502	ATP synthase subunit alpha; blockage of ATP hydrol	88.45
3gqb_B	464	V-type ATP synthase beta chain; A3B3, V-ATPase, AT	88.43
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	88.35
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	88.3
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	88.27
3vr4_D	465	V-type sodium ATPase subunit D; V-ATPase, rotary m	88.24
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	88.2
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	88.16
2ck3_A	510	ATP synthase subunit alpha\, mitochondrial; hydrol	88.13
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	87.98
2chq_A	319	Replication factor C small subunit; DNA-binding pr	87.93
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	87.75
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	87.61
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	87.44
1fx0_A	507	ATP synthase alpha chain; latent ATPase, thermal s	87.27
3oaa_A	513	ATP synthase subunit alpha; rossmann fold, hydrola	87.24
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	87.22
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	86.53
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	86.39
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	86.31
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	86.12
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	85.9
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	85.87
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	85.7
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	85.28
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	85.27
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	85.01
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	84.88
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	84.63
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	84.17
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	83.94
3end_A	307	Light-independent protochlorophyllide reductase ir	83.94
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	83.76
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	83.63
1lkx_A	697	Myosin IE heavy chain; myosin motor domain, lever	83.36
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	83.24
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	82.77
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	82.3
1w9i_A	770	Myosin II heavy chain; molecular motor, ATPase, mo	81.64
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	81.64
4db1_A	783	Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb	81.58
2v26_A	784	Myosin VI; calmodulin-binding, nucleotide-binding,	81.32
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	81.1
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	80.99
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	80.92
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	80.48

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=1e-51  Score=452.04  Aligned_cols=392  Identities=20%  Similarity=0.344  Sum_probs=342.3

Q ss_pred             hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          116 VWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REEAMVFHKSSRFLVLLCVTSGIFSGLRSGC  194 (510)
Q Consensus       116 ~~~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~  194 (510)
                      .++.+++++++++++++.++.++++.++.+++.+..|++++..++... ..+...+......+.++.++..++.+++.+.
T Consensus        21 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (598)
T 3qf4_B           21 PTATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKI  100 (598)
T ss_dssp             HHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457889999999999999999999999999999999999888876432 1222222222233444556667788888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 010471          195 FSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLT  274 (510)
Q Consensus       195 ~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~  274 (510)
                      ....+.++..++|.++|+|++++|++||+++++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|+++
T Consensus       101 ~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~  180 (598)
T 3qf4_B          101 MLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILS  180 (598)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          275 LSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAY  354 (510)
Q Consensus       275 li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~  354 (510)
                      +++++.+|++.++...+.++.++..++.++..++.++.+.|+++|+++||+|+.|+.+.++|++..++..+...+.....
T Consensus       181 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  260 (598)
T 3qf4_B          181 LVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFS  260 (598)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988888888888888888888899999999999999999999999999999999999999999888877666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 010471          355 GLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSN  434 (510)
Q Consensus       355 ~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~  434 (510)
                      +....+..++..+..++++++|++++..|.+++|.+++++.|...+..|+..+...+..+.++..+++|+.++++.+++.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~  340 (598)
T 3qf4_B          261 GVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEK  340 (598)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            66667777777777788899999999999999999999999999999999999999999999999999999999987764


Q ss_pred             CCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          435 QFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       435 ~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      +. ++.....+..++|+++||+|+|++  ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|+
T Consensus       341 ~~-~~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~  413 (598)
T 3qf4_B          341 DD-PDAVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQIL  413 (598)
T ss_dssp             CC-SSCCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEE
T ss_pred             CC-CCCCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEE
Confidence            32 122222334578999999999974  35799999999999999999999999999999999999999999984

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=1.5e-51  Score=449.53  Aligned_cols=389  Identities=20%  Similarity=0.280  Sum_probs=336.0

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          121 SRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIAN  199 (510)
Q Consensus       121 ~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~  199 (510)
                      ++++++++++++.++.++++.++.+++.++.|+++...++... ..+...+......+.++.++..++.+++.+.....+
T Consensus        12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (587)
T 3qf4_A           12 KTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIGCTVFASYAS   91 (587)
T ss_dssp             CCGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567889999999999999999999999999999888876432 222222222222333444556667778888888999


Q ss_pred             HHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 010471          200 IVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALL  279 (510)
Q Consensus       200 ~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li  279 (510)
                      .++..++|.++|+|++++|+.+|+++++|++++|+++|++.+++.+...+..++...+.+++.+++++.++|++++++++
T Consensus        92 ~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~  171 (587)
T 3qf4_A           92 QNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIF  171 (587)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988888888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          280 ICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNM  359 (510)
Q Consensus       280 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (510)
                      .+|++.++..++.++.++..++.++..++.++.+.|+++|+++||+|+.|+.+.++|++..+++.+...+.....+....
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (587)
T 3qf4_A          172 LIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALP  251 (587)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998888888888888888888889999999999999999999999999999999999999999888887766666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 010471          360 SFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE  439 (510)
Q Consensus       360 ~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~  439 (510)
                      ...++..+..++++++|++++..|.+++|++++++.|...+..|+..+...+..+.++..+++|+.++++.+++.++..+
T Consensus       252 ~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~  331 (587)
T 3qf4_A          252 LFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADN  331 (587)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCC
Confidence            67777777778889999999999999999999999999999999999999999999999999999999998776432222


Q ss_pred             CccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          440 GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       440 ~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ....++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|+
T Consensus       332 ~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~  401 (587)
T 3qf4_A          332 ALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVE  401 (587)
T ss_dssp             CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEE
T ss_pred             ccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEE
Confidence            22223345789999999999754 46799999999999999999999999999999999999999999984

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=3.5e-51  Score=481.79  Aligned_cols=392  Identities=22%  Similarity=0.291  Sum_probs=329.9

Q ss_pred             HHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhch------------------hhhHHHHHH----HH
Q 010471          119 ALSRMWNLIGRD-KWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR------------------EEAMVFHKS----SR  175 (510)
Q Consensus       119 ~l~~l~~~~~~~-~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~------------------~~~~~~~~~----~~  175 (510)
                      .++++++|..++ +..++.+++++++.++..-.++.+++..++.-..                  .....+...    ..
T Consensus        61 ~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (1321)
T 4f4c_A           61 SIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVMNVVW  140 (1321)
T ss_dssp             CHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHHHHHH
T ss_pred             CHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHHHHHHH
Confidence            356777887654 4555666666665554333333344443321000                  001112111    22


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 010471          176 FLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRN  255 (510)
Q Consensus       176 ~l~~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~  255 (510)
                      .++++.++..++.+++.++..++++++..++|.++|+|++++|++|||++++|++++|+++|++.+++.++..+..++..
T Consensus       141 ~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~  220 (1321)
T 4f4c_A          141 SYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQY  220 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344556667788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHH
Q 010471          256 SLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGR  335 (510)
Q Consensus       256 ~~~~i~~li~l~~~s~~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~  335 (510)
                      ++++++.++++++++|++++++++++|++.++...+.++.++..++.++..++.++.+.|+++|+++||+|+.|+.+.++
T Consensus       221 ~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~  300 (1321)
T 4f4c_A          221 LSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELER  300 (1321)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHH
Confidence            99999999999999999999999999999998888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          336 YKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLL  415 (510)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~  415 (510)
                      |++..++..+...+.....+.......++..+..++++|+|++++.+|.+++|++++++.+...+..|+..+...+..+.
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~  380 (1321)
T 4f4c_A          301 YSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLG  380 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888877777777777777778888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCC-CccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHH
Q 010471          416 QSIGATEKVFQLIDLLPSNQFLSE-GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTF  494 (510)
Q Consensus       416 ~~~~a~~rl~eil~~~~e~~~~~~-~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL  494 (510)
                      ++..+++|++++++.+|+.+...+ +..+.+.+++|+|+||+|+||+++++++|+|+||+||+||++|||||||||||||
T Consensus       381 ~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl  460 (1321)
T 4f4c_A          381 TAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTI  460 (1321)
T ss_dssp             HHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHH
T ss_pred             HHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHH
Confidence            999999999999998876543222 2233445689999999999998777899999999999999999999999999999


Q ss_pred             HHHHhcccCCCCceeC
Q 010471          495 VNLLLRLYEPSDGQVC  510 (510)
Q Consensus       495 ~kLL~g~y~p~sG~I~  510 (510)
                      ++||+|+|+|++|+|+
T Consensus       461 l~ll~~~~~~~~G~I~  476 (1321)
T 4f4c_A          461 ISLLLRYYDVLKGKIT  476 (1321)
T ss_dssp             HHHHTTSSCCSEEEEE
T ss_pred             HHHhccccccccCccc
Confidence            9999999999999984

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=100.00  E-value=3.3e-50  Score=439.14  Aligned_cols=391  Identities=23%  Similarity=0.355  Sum_probs=336.4

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          117 WIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR-EEAMVFHKSSRFLVLLCVTSGIFSGLRSGCF  195 (510)
Q Consensus       117 ~~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~  195 (510)
                      ++.+++++++.+++++.++.++++.++.+++.+..|+++...++.... .+..........+.++.++..++.+++.+..
T Consensus        10 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (582)
T 3b5x_A           10 WQTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGFASSYCL   89 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467788899999999998888999999999998899888777654321 1111111111112333455666778888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010471          196 SIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTL  275 (510)
Q Consensus       196 ~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~l  275 (510)
                      ...+.++..++|.++|++++++|++||+++++|++++|+++|++.+++.+...+..++..++.+++++++++.++|++++
T Consensus        90 ~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l  169 (582)
T 3b5x_A           90 SWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSL  169 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          276 SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG  355 (510)
Q Consensus       276 i~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (510)
                      ++++++|++.++...+.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+..+
T Consensus       170 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (582)
T 3b5x_A          170 VLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQS  249 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998888888888888888888888899999999999999999999999999999999999999999988887777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 010471          356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ  435 (510)
Q Consensus       356 ~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~  435 (510)
                      .......++..+..++++++|++++.+|.+++|++++++.+...+..|+..+...+..+.++..+.+|+.++++.+++.+
T Consensus       250 ~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~  329 (582)
T 3b5x_A          250 IADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD  329 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Confidence            77777777777788888999999999999999999999999999999999999999999999999999999998776533


Q ss_pred             CCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          436 FLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       436 ~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .  +....++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+|+|+|+|+|++|+|+
T Consensus       330 ~--~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~  401 (582)
T 3b5x_A          330 N--GKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC  401 (582)
T ss_pred             C--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE
Confidence            1  111112235689999999999753 25799999999999999999999999999999999999999999984

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=100.00  E-value=1.6e-51  Score=449.09  Aligned_cols=390  Identities=21%  Similarity=0.288  Sum_probs=336.2

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhch-hh---hHHH----HHHHHHHHHHHHHHHHHHHHH
Q 010471          120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR-EE---AMVF----HKSSRFLVLLCVTSGIFSGLR  191 (510)
Q Consensus       120 l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~-~~---~~~~----~~~~~~l~~l~~~~~~~~~i~  191 (510)
                      +++++++.+++++.++.+++++++.+++.+..|+++...++.... .+   ...+    ......+.++.++..++.+++
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (578)
T 4a82_A            2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR   81 (578)
T ss_dssp             HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467889999999999999999999999999999988877754321 11   1111    111112223344556677888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010471          192 SGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSW  271 (510)
Q Consensus       192 ~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~  271 (510)
                      .+.....+.++..++|.++|+|++++|++||+++++|++++|+++|++.+++.+...+..++..++.+++++++++.++|
T Consensus        82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~  161 (578)
T 4a82_A           82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDV  161 (578)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            88888999999999999999999999999999999999999999999999998888777788888889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q 010471          272 PLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRES  351 (510)
Q Consensus       272 ~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~  351 (510)
                      ++++++++.+|++.++...+.++.++..++.++..++.++.+.|+++|+++||+|+.|+.+.++|++..++..+...+..
T Consensus       162 ~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~  241 (578)
T 4a82_A          162 KLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT  241 (578)
T ss_dssp             TTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988888888888888888888999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 010471          352 MAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLL  431 (510)
Q Consensus       352 ~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~  431 (510)
                      +..+.......++..+..++++++|++++..|.+++|++++++.|...+..|+..+...+..+.++..+++|+.++++.+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~  321 (578)
T 4a82_A          242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDED  321 (578)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            77777777777777777888899999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          432 PSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       432 ~e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ++.++..+........++|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|+
T Consensus       322 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~  399 (578)
T 4a82_A          322 YDIKNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL  399 (578)
T ss_dssp             CSSCCCTTCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEE
T ss_pred             CcccCCCCccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEE
Confidence            7643222222223345789999999999853 36799999999999999999999999999999999999999999984

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=100.00  E-value=2.3e-50  Score=440.35  Aligned_cols=391  Identities=23%  Similarity=0.350  Sum_probs=337.0

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          117 WIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR-EEAMVFHKSSRFLVLLCVTSGIFSGLRSGCF  195 (510)
Q Consensus       117 ~~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~  195 (510)
                      ++.+++++++.+++++.++.++++.++.+++.+..|+++...++.... .+..........+.++.++..++.+++.+..
T Consensus        10 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (582)
T 3b60_A           10 WQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCI   89 (582)
T ss_dssp             CHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            366788899999999999989999999999998899888777754321 1211111111112334455667778888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010471          196 SIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTL  275 (510)
Q Consensus       196 ~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~l  275 (510)
                      ...+.++..++|.++|+|++++|++||+++++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|++++
T Consensus        90 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l  169 (582)
T 3b60_A           90 SWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSI  169 (582)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          276 SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG  355 (510)
Q Consensus       276 i~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (510)
                      ++++++|++.++...+.++.++..++.++..++.++.+.|+++|+++||+|+.|+.+.++|++..++..+...+..+..+
T Consensus       170 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (582)
T 3b60_A          170 ILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS  249 (582)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998888888888888888888888899999999999999999999999999999999999999999988877777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 010471          356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ  435 (510)
Q Consensus       356 ~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~  435 (510)
                      .......++..+..++++++|++++..|.+++|++++++.+...+..|+..+...+..+.++..+.+|+.++++.+++.+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~  329 (582)
T 3b60_A          250 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKD  329 (582)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence            77777777777777888999999999999999999999999999999999999999999999999999999999876543


Q ss_pred             CCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          436 FLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       436 ~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .  ++...++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+|+|+|+|+|++|+|+
T Consensus       330 ~--~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~  401 (582)
T 3b60_A          330 E--GKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL  401 (582)
T ss_dssp             C--CCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEE
T ss_pred             C--CCCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEE
Confidence            1  111112235689999999999743 25799999999999999999999999999999999999999999984

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=3.5e-49  Score=463.79  Aligned_cols=392  Identities=27%  Similarity=0.388  Sum_probs=332.2

Q ss_pred             HHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhh-----------------h----HHHHHHHHH
Q 010471          119 ALSRMWNLIG-RDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREE-----------------A----MVFHKSSRF  176 (510)
Q Consensus       119 ~l~~l~~~~~-~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~-----------------~----~~~~~~~~~  176 (510)
                      .++++++|.. ++++.++.+++++++.++.....|.+++..++.....+                 .    .........
T Consensus        34 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (1284)
T 3g5u_A           34 SVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYY  113 (1284)
T ss_dssp             TTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHHHHH
Confidence            3566777774 46777888888888888877777777666553211000                 0    001111122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 010471          177 LVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNS  256 (510)
Q Consensus       177 l~~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~  256 (510)
                      +.++.++..++.+++.++....+.++..++|.++|++++++|++|||++++|++++|+++|++.+++.+...+..++..+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~  193 (1284)
T 3g5u_A          114 YTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAM  193 (1284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445566677888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHH
Q 010471          257 LQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRY  336 (510)
Q Consensus       257 ~~~i~~li~l~~~s~~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~  336 (510)
                      +++++.+++++.++|++++++++.+|++.++..++.++.++..++.++..++.++.+.|+++|+++||+|+.|+.+.++|
T Consensus       194 ~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~  273 (1284)
T 3g5u_A          194 ATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERY  273 (1284)
T ss_dssp             HHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHH
Confidence            99999999999999999999999999999988888888889888899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          337 KIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQ  416 (510)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~  416 (510)
                      ++..++..+...+.....+.......++..+..++++|+|++++..|.+++|++++++.+......++..+...+..+.+
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (1284)
T 3g5u_A          274 NNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFAN  353 (1284)
T ss_dssp             HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988888777777777777777778888899999999999999999998887777788888899999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCC-CCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHH
Q 010471          417 SIGATEKVFQLIDLLPSNQFL-SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFV  495 (510)
Q Consensus       417 ~~~a~~rl~eil~~~~e~~~~-~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~  495 (510)
                      +..+++|++++++.+|+.+.. +++..+.+..++|+|+||+|+||++++.++|+|+||+|++||++|||||||||||||+
T Consensus       354 ~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~  433 (1284)
T 3g5u_A          354 ARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTV  433 (1284)
T ss_dssp             HHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHH
T ss_pred             HHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHH
Confidence            999999999999987764321 1222233456899999999999876556899999999999999999999999999999


Q ss_pred             HHHhcccCCCCceeC
Q 010471          496 NLLLRLYEPSDGQVC  510 (510)
Q Consensus       496 kLL~g~y~p~sG~I~  510 (510)
                      ++|+|+|+|++|+|+
T Consensus       434 ~ll~g~~~~~~G~i~  448 (1284)
T 3g5u_A          434 QLMQRLYDPLDGMVS  448 (1284)
T ss_dssp             HHTTTSSCCSEEEEE
T ss_pred             HHHhCCCCCCCeEEE
Confidence            999999999999984

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=3.6e-47  Score=447.75  Aligned_cols=391  Identities=20%  Similarity=0.252  Sum_probs=310.5

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc--hhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ--REE-AMVFHKSSRFLVLLCVTSGIFSGLRSGCFS  196 (510)
Q Consensus       120 l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~--~~~-~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~  196 (510)
                      +.+++.+.+++++.++.++++.++.+......+.++...+....  ..+ ...........+++.++.+++.+++.++..
T Consensus       740 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~  819 (1321)
T 4f4c_A          740 LFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMG  819 (1321)
T ss_dssp             HHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566777888888887777777766655555555554443211  111 011111122233455566778888999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCcccccc--cCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 010471          197 IANIVLVKRLRETLYSALLFQDVYFFDT--EAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLT  274 (510)
Q Consensus       197 ~~~~~i~~~lr~~l~~~ll~lp~~ff~~--~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~  274 (510)
                      ..+.++..++|.++|++++++|++|||+  +++|++++|+++|++.+++.+...+..++..++.+++.++++++++|+++
T Consensus       820 ~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~  899 (1321)
T 4f4c_A          820 IASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMA  899 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHHH
Confidence            9999999999999999999999999987  57999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          275 LSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAY  354 (510)
Q Consensus       275 li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~  354 (510)
                      +++++++|++.+...++.++.++...+.++..++....+.|+++|+++||+|+.|+.+.++|.+..++..+...+.....
T Consensus       900 lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  979 (1321)
T 4f4c_A          900 LLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQ  979 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998887776666555444455556667788888999999999999999999999999999999988888877666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 010471          355 GLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKY--VLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP  432 (510)
Q Consensus       355 ~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~  432 (510)
                      +........+..+..++++++|+.++..|..+.+.+..+  +.+......++..+...+..+.++..+.+|++++++.++
T Consensus       980 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~ 1059 (1321)
T 4f4c_A          980 GLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKIS 1059 (1321)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcc
Confidence            666666666666777788899999999988777655433  222332334555667788889999999999999999887


Q ss_pred             CCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          433 SNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       433 e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      +.+.........+..|+|+|+||+|+||++++.+||+|+||+|+|||+|||||+||||||||++||+|||+|++|+|+
T Consensus      1060 ~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~ 1137 (1321)
T 4f4c_A         1060 KIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIF 1137 (1321)
T ss_dssp             SSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEE
T ss_pred             cCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEE
Confidence            754333223334567899999999999987777899999999999999999999999999999999999999999984

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=2.1e-43  Score=414.81  Aligned_cols=391  Identities=24%  Similarity=0.305  Sum_probs=321.5

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchh---h--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE---E--AMVFHKSSRFLVLLCVTSGIFSGLRSGC  194 (510)
Q Consensus       120 l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~---~--~~~~~~~~~~l~~l~~~~~~~~~i~~~~  194 (510)
                      +++++++.+++++.++.++++.++.+.+....|.++...+......   +  ..........+.++.++..++.+++.+.
T Consensus       693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~  772 (1284)
T 3g5u_A          693 FWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFT  772 (1284)
T ss_dssp             TTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566777788888888888888887777766666665554221110   0  0111111122333445556667788888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcccccc--cCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 010471          195 FSIANIVLVKRLRETLYSALLFQDVYFFDT--EAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWP  272 (510)
Q Consensus       195 ~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~--~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~  272 (510)
                      +...+.++..++|.++|++++++|++|||+  +++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|+
T Consensus       773 ~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~  852 (1284)
T 3g5u_A          773 FGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQ  852 (1284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            899999999999999999999999999995  789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          273 LTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESM  352 (510)
Q Consensus       273 l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~  352 (510)
                      +++++++.+|++++...+..++.++...+.++..++.+..+.|+++|+++||+|+.|+.+.++|++..++..+...+...
T Consensus       853 l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~  932 (1284)
T 3g5u_A          853 LTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAH  932 (1284)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888877777777777777777778888899999999999999999999999999999998888888777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 010471          353 AYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP  432 (510)
Q Consensus       353 ~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~  432 (510)
                      ..+....+...+..+..++++|+|++++..|.++.|.++++..+......++..+......+.++..+.+|+.++++.+|
T Consensus       933 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~ 1012 (1284)
T 3g5u_A          933 VFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTP 1012 (1284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            77777777777777788888999999999999999999988888777777777777667777889999999999999877


Q ss_pred             CCCCCC-CCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          433 SNQFLS-EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       433 e~~~~~-~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      +.+... .+..+.+..+.|+|+||+|+||++++.++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|+
T Consensus      1013 ~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~ 1091 (1284)
T 3g5u_A         1013 EIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVF 1091 (1284)
T ss_dssp             SSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEE
T ss_pred             cccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence            644221 122233446889999999999876556799999999999999999999999999999999999999999984

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.82  E-value=1.8e-21  Score=194.64  Aligned_cols=98  Identities=29%  Similarity=0.434  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCc
Q 010471          411 LSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSG  490 (510)
Q Consensus       411 ~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSG  490 (510)
                      ...++++..+++|++++++.+++..............+.|+|+||+|+|+++  .++|+|+||+|++||++|||||||||
T Consensus        15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~--~~vL~~isl~i~~Ge~vaivG~sGsG   92 (306)
T 3nh6_A           15 VPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADG--RETLQDVSFTVMPGQTLALVGPSGAG   92 (306)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTT--CEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred             chhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCC--CceeeeeeEEEcCCCEEEEECCCCch
Confidence            3455677789999999998766533222211222345789999999999743  57999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCceeC
Q 010471          491 KSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       491 KSTL~kLL~g~y~p~sG~I~  510 (510)
                      ||||+++|+|+|+|++|+|+
T Consensus        93 KSTLl~ll~gl~~p~~G~I~  112 (306)
T 3nh6_A           93 KSTILRLLFRFYDISSGCIR  112 (306)
T ss_dssp             HHHHHHHHTTSSCCSEEEEE
T ss_pred             HHHHHHHHHcCCCCCCcEEE
Confidence            99999999999999999984

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.68  E-value=4e-19  Score=177.22  Aligned_cols=118  Identities=15%  Similarity=0.145  Sum_probs=96.0

Q ss_pred             cCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccCCCccccEEEEeeeEECCC
Q 010471          382 IGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPS  461 (510)
Q Consensus       382 ~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~  461 (510)
                      .+..+-+.+.+|+.+..+ ..++..++..+..+.++..+.+|+.++++.+++.... .. ......+.|+++||+|+|+ 
T Consensus        37 ~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~-~~-~~~~~~~~i~~~~vs~~y~-  112 (305)
T 2v9p_A           37 LAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATG-EG-SWKSILTFFNYQNIELITF-  112 (305)
T ss_dssp             HTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCS-SC-CTHHHHHHHHHTTCCHHHH-
T ss_pred             HhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC-CC-cccccCCeEEEEEEEEEcC-
Confidence            345666788888888766 4788899999999999999999999999875542211 11 1112234699999999996 


Q ss_pred             CCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          462 RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       462 ~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                         .++|+|+||+|++||++|||||||||||||+++|+|+|   +|+|
T Consensus       113 ---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I  154 (305)
T 2v9p_A          113 ---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV  154 (305)
T ss_dssp             ---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE
T ss_pred             ---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE
Confidence               36999999999999999999999999999999999999   8987

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.66  E-value=5.4e-17  Score=157.75  Aligned_cols=62  Identities=45%  Similarity=0.753  Sum_probs=56.9

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .+|+++||+|+|+++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+
T Consensus         6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~   67 (247)
T 2ff7_A            6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL   67 (247)
T ss_dssp             EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence            579999999999532 25699999999999999999999999999999999999999999984

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.65  E-value=9.5e-17  Score=158.13  Aligned_cols=64  Identities=44%  Similarity=0.779  Sum_probs=57.9

Q ss_pred             cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .+.|+++||+|+|+++++.++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+
T Consensus        14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~   77 (271)
T 2ixe_A           14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVL   77 (271)
T ss_dssp             CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE
Confidence            3579999999999752235799999999999999999999999999999999999999999984

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.64  E-value=1.2e-16  Score=153.66  Aligned_cols=62  Identities=24%  Similarity=0.557  Sum_probs=57.2

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      +.|+++||+|+|+++ ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus         5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~   66 (229)
T 2pze_A            5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK   66 (229)
T ss_dssp             EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEE
Confidence            479999999999742 35799999999999999999999999999999999999999999983

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.64  E-value=6.5e-17  Score=156.03  Aligned_cols=61  Identities=38%  Similarity=0.579  Sum_probs=55.7

Q ss_pred             EEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++||+|+|++++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.
T Consensus         2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~   63 (235)
T 3tif_A            2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVY   63 (235)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEE
Confidence            78999999997432 24699999999999999999999999999999999999999999983

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.64  E-value=1.4e-16  Score=156.94  Aligned_cols=60  Identities=27%  Similarity=0.496  Sum_probs=56.0

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+|+|+++  .++|+|+||+|++||++|||||||||||||+|+|+|+++|++|+|+
T Consensus         7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~   66 (275)
T 3gfo_A            7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL   66 (275)
T ss_dssp             EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEE
Confidence            59999999999743  4599999999999999999999999999999999999999999984

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.63  E-value=1.3e-16  Score=154.04  Aligned_cols=61  Identities=30%  Similarity=0.544  Sum_probs=56.2

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+|+|+++ ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus         3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~   63 (237)
T 2cbz_A            3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA   63 (237)
T ss_dssp             CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEE
T ss_pred             eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence            48999999999632 35799999999999999999999999999999999999999999983

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.63  E-value=1.9e-16  Score=153.60  Aligned_cols=59  Identities=32%  Similarity=0.653  Sum_probs=55.0

Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++||+|+|++  ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.
T Consensus         2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~   60 (243)
T 1mv5_A            2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT   60 (243)
T ss_dssp             EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEE
T ss_pred             EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence            789999999953  25799999999999999999999999999999999999999999983

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.61  E-value=2.6e-16  Score=160.28  Aligned_cols=64  Identities=30%  Similarity=0.511  Sum_probs=57.2

Q ss_pred             cccEEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          447 MGHVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       447 ~~~I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      +..|+++||+++|+++. +.++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus        22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~   86 (366)
T 3tui_C           22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVL   86 (366)
T ss_dssp             -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred             CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEE
Confidence            34699999999997432 24699999999999999999999999999999999999999999984

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.61  E-value=3.2e-16  Score=150.11  Aligned_cols=59  Identities=36%  Similarity=0.507  Sum_probs=55.3

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++   +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus         4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~   62 (224)
T 2pcj_A            4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVF   62 (224)
T ss_dssp             EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEE
T ss_pred             EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence            4899999999963   4699999999999999999999999999999999999999999983

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.60  E-value=5.1e-16  Score=152.00  Aligned_cols=62  Identities=32%  Similarity=0.658  Sum_probs=56.0

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      +.|+++||+|+|++++.+++|+|+||+|++||++||+||||||||||+|+|+|+++| +|+|.
T Consensus        16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~   77 (260)
T 2ghi_A           16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIK   77 (260)
T ss_dssp             CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEE
T ss_pred             CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEE
Confidence            469999999999753224699999999999999999999999999999999999998 89983

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.60  E-value=3.9e-16  Score=151.09  Aligned_cols=59  Identities=17%  Similarity=0.427  Sum_probs=55.4

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+|+|++   +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus         6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~   64 (240)
T 1ji0_A            6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII   64 (240)
T ss_dssp             EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence            4999999999963   4699999999999999999999999999999999999999999983

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.60  E-value=5.2e-16  Score=152.40  Aligned_cols=59  Identities=34%  Similarity=0.600  Sum_probs=55.7

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++   +++|+|+||+|++||++|||||||||||||+|+|+|+++|++|+|.
T Consensus        11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~   69 (266)
T 4g1u_C           11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECH   69 (266)
T ss_dssp             EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEE
T ss_pred             eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE
Confidence            5999999999963   4699999999999999999999999999999999999999999983

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.60  E-value=5.1e-16  Score=153.46  Aligned_cols=66  Identities=23%  Similarity=0.284  Sum_probs=56.4

Q ss_pred             cCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          442 KLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       442 ~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+..+..|+++||+++|++   .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus        14 ~~~~~~~~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~   79 (279)
T 2ihy_A           14 VPRGSHMLIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVN   79 (279)
T ss_dssp             -----CEEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             CCCCCCceEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEE
Confidence            33333346999999999963   4699999999999999999999999999999999999999999983

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.59  E-value=6.3e-16  Score=146.84  Aligned_cols=59  Identities=27%  Similarity=0.564  Sum_probs=55.3

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ..|+++||+++|++    ++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus         9 ~~l~~~~ls~~y~~----~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~   67 (214)
T 1sgw_A            9 SKLEIRDLSVGYDK----PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII   67 (214)
T ss_dssp             CEEEEEEEEEESSS----EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             ceEEEEEEEEEeCC----eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE
Confidence            36999999999952    699999999999999999999999999999999999999999983

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.59  E-value=5e-16  Score=152.17  Aligned_cols=59  Identities=31%  Similarity=0.501  Sum_probs=55.5

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+|+|++   .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus        24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~   82 (263)
T 2olj_A           24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEII   82 (263)
T ss_dssp             SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEE
Confidence            5999999999953   4699999999999999999999999999999999999999999983

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.59  E-value=6.1e-16  Score=151.26  Aligned_cols=59  Identities=27%  Similarity=0.491  Sum_probs=55.4

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+|+|++   .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus         7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~   65 (257)
T 1g6h_A            7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY   65 (257)
T ss_dssp             EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence            4999999999963   4699999999999999999999999999999999999999999983

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.59  E-value=6.5e-16  Score=150.78  Aligned_cols=61  Identities=30%  Similarity=0.515  Sum_probs=56.3

Q ss_pred             cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .+.|+++||+++|++   .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus        13 ~~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~   73 (256)
T 1vpl_A           13 MGAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT   73 (256)
T ss_dssp             -CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             CCeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence            357999999999953   4699999999999999999999999999999999999999999983

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.58  E-value=6.5e-16  Score=151.45  Aligned_cols=59  Identities=34%  Similarity=0.590  Sum_probs=55.3

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++   .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus         6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~   64 (262)
T 1b0u_A            6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII   64 (262)
T ss_dssp             CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence            4999999999953   4699999999999999999999999999999999999999999983

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.57  E-value=1.2e-15  Score=149.85  Aligned_cols=61  Identities=33%  Similarity=0.561  Sum_probs=55.1

Q ss_pred             EEEEeeeEECCCCCC--CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPT--VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~--~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++||+|+|+.+..  +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus         3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~   65 (266)
T 2yz2_A            3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVL   65 (266)
T ss_dssp             EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE
Confidence            899999999962111  4699999999999999999999999999999999999999999983

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.57  E-value=1.5e-15  Score=148.12  Aligned_cols=60  Identities=25%  Similarity=0.562  Sum_probs=55.5

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++  ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.
T Consensus         4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~   63 (253)
T 2nq2_C            4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE   63 (253)
T ss_dssp             EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence            4899999999962  24699999999999999999999999999999999999999999983

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.57  E-value=8.2e-16  Score=152.71  Aligned_cols=80  Identities=24%  Similarity=0.421  Sum_probs=50.8

Q ss_pred             HHHHhhcCCCCCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          423 KVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       423 rl~eil~~~~e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      |+.++++.++++. . . .......+.|+++||+|+|     +++|+|+||+|++||++||+||||||||||+|+|+|++
T Consensus        17 ~~~~~~~~~~~~~-~-~-~~~~~~~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           17 GFGELFEKAKQNN-N-N-RKTSNGDDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             HHHHHHHHCC--------------------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             HHHHHhccccccc-c-c-ccccCCCceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            6667766554322 1 1 1112234579999999964     35999999999999999999999999999999999999


Q ss_pred             CCCCceeC
Q 010471          503 EPSDGQVC  510 (510)
Q Consensus       503 ~p~sG~I~  510 (510)
                      +|++|+|.
T Consensus        89 ~p~~G~I~   96 (290)
T 2bbs_A           89 EPSEGKIK   96 (290)
T ss_dssp             CEEEEEEE
T ss_pred             CCCCcEEE
Confidence            99999983

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.56  E-value=1.2e-15  Score=148.56  Aligned_cols=59  Identities=27%  Similarity=0.401  Sum_probs=55.0

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc--cCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~--y~p~sG~I~  510 (510)
                      .|+++||+|+|++   +++|+|+||+|++||++||+||||||||||+|+|+|+  ++|++|+|.
T Consensus         3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~   63 (250)
T 2d2e_A            3 QLEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEIL   63 (250)
T ss_dssp             EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEE
T ss_pred             eEEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEE
Confidence            4899999999963   4699999999999999999999999999999999999  899999983

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.55  E-value=1.9e-15  Score=153.68  Aligned_cols=59  Identities=27%  Similarity=0.617  Sum_probs=55.5

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++   .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus         4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~   62 (359)
T 3fvq_A            4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEIS   62 (359)
T ss_dssp             CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred             EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEE
Confidence            5899999999953   4699999999999999999999999999999999999999999984

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.55  E-value=3.2e-15  Score=152.06  Aligned_cols=61  Identities=33%  Similarity=0.572  Sum_probs=56.2

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ..|+++||+++|+++  .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus        13 ~~l~~~~l~~~y~g~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~   73 (355)
T 1z47_A           13 MTIEFVGVEKIYPGG--ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW   73 (355)
T ss_dssp             EEEEEEEEEECCTTS--TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred             ceEEEEEEEEEEcCC--CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEE
Confidence            469999999999422  4699999999999999999999999999999999999999999983

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.55  E-value=2.3e-15  Score=154.21  Aligned_cols=59  Identities=31%  Similarity=0.471  Sum_probs=55.5

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++   ..+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus         3 ~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~   61 (381)
T 3rlf_A            3 SVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF   61 (381)
T ss_dssp             CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred             EEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEE
Confidence            4899999999963   4699999999999999999999999999999999999999999984

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.54  E-value=2e-15  Score=148.40  Aligned_cols=60  Identities=32%  Similarity=0.426  Sum_probs=54.9

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc--cCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~--y~p~sG~I~  510 (510)
                      ..|+++||+|+|++   +++|+|+||+|++||++||+||||||||||+|+|+|+  ++|++|+|.
T Consensus        19 ~~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~   80 (267)
T 2zu0_C           19 HMLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVE   80 (267)
T ss_dssp             -CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEE
T ss_pred             ceEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEE
Confidence            35999999999953   4699999999999999999999999999999999999  689999983

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.54  E-value=4.5e-15  Score=152.96  Aligned_cols=63  Identities=27%  Similarity=0.543  Sum_probs=57.2

Q ss_pred             ccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       446 ~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ..+.|+++||+|+|++. +.++|+|+||+|++||.++|+||||||||||+++|+|+++ ++|+|+
T Consensus        16 ~~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~   78 (390)
T 3gd7_A           16 SGGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQ   78 (390)
T ss_dssp             SSCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEE
T ss_pred             CCCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEE
Confidence            34689999999999743 3579999999999999999999999999999999999998 899984

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.52  E-value=5.7e-15  Score=150.72  Aligned_cols=59  Identities=32%  Similarity=0.614  Sum_probs=55.2

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|.+   .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus         3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~   61 (362)
T 2it1_A            3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY   61 (362)
T ss_dssp             CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred             EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEE
Confidence            4899999999953   4699999999999999999999999999999999999999999983

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.52  E-value=5.4e-15  Score=150.75  Aligned_cols=59  Identities=29%  Similarity=0.575  Sum_probs=55.2

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++   .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus         3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~   61 (359)
T 2yyz_A            3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIY   61 (359)
T ss_dssp             CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred             EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEE
Confidence            4899999999953   4699999999999999999999999999999999999999999984

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.51  E-value=6.7e-15  Score=150.72  Aligned_cols=59  Identities=29%  Similarity=0.568  Sum_probs=55.5

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++   .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus        11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~   69 (372)
T 1v43_A           11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY   69 (372)
T ss_dssp             CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred             eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEE
Confidence            5999999999953   4699999999999999999999999999999999999999999984

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.51  E-value=7.5e-15  Score=150.58  Aligned_cols=59  Identities=29%  Similarity=0.510  Sum_probs=55.2

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++   .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus         3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~   61 (372)
T 1g29_1            3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY   61 (372)
T ss_dssp             EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred             EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEE
Confidence            4899999999953   4699999999999999999999999999999999999999999984

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.50  E-value=5.1e-15  Score=150.88  Aligned_cols=59  Identities=32%  Similarity=0.514  Sum_probs=55.1

Q ss_pred             cEEEEeeeEECCCCCCCC--ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVP--ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~--vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|++   .+  +|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus         3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~   63 (353)
T 1oxx_K            3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY   63 (353)
T ss_dssp             CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEE
T ss_pred             EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Confidence            4899999999953   46  99999999999999999999999999999999999999999983

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.48  E-value=1.2e-14  Score=142.22  Aligned_cols=59  Identities=27%  Similarity=0.470  Sum_probs=52.9

Q ss_pred             EEEEeeeEECCCC-CCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~-~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++||+++|+++ ..+++|+|+||+|+ ||++||+||||||||||+|+|+|++ |++|+|.
T Consensus         2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~   61 (263)
T 2pjz_A            2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIF   61 (263)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEE
T ss_pred             EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEE
Confidence            7899999999631 01469999999999 9999999999999999999999999 9999983

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.47  E-value=1.2e-17  Score=171.39  Aligned_cols=134  Identities=13%  Similarity=0.142  Sum_probs=91.8

Q ss_pred             HHHHHHHHHhc-CccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccC-CCcccc
Q 010471          372 AVLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKL-QRLMGH  449 (510)
Q Consensus       372 ~l~~g~~lv~~-g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~~-~~~~~~  449 (510)
                      +.+.|++.+.. |.++.|++.+|+.+...+..+  .+....+.+..+..+.+|+.+++  +|+.+........ ....+.
T Consensus        51 v~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~  126 (361)
T 2gza_A           51 CERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTR  126 (361)
T ss_dssp             EEETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCC
T ss_pred             EEECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCC
Confidence            34567777776 899999999998776655433  12111122222334567888887  3332211100000 111234


Q ss_pred             E---------EEEeeeEE---CCCCCCCCcc---------ccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCce
Q 010471          450 V---------QFVNISFH---YPSRPTVPIL---------NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ  508 (510)
Q Consensus       450 I---------~f~nVsF~---Y~~~~~~~vL---------~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~  508 (510)
                      +         +|+||+|+   |++. ++++|         +++|++|++|+.++|+|+||||||||+++|+|+|+|++|.
T Consensus       127 itl~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~  205 (361)
T 2gza_A          127 RTLEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRL  205 (361)
T ss_dssp             CCHHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCE
T ss_pred             CCHHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceE
Confidence            5         99999999   9742 23566         9999999999999999999999999999999999999998


Q ss_pred             eC
Q 010471          509 VC  510 (510)
Q Consensus       509 I~  510 (510)
                      |+
T Consensus       206 I~  207 (361)
T 2gza_A          206 IT  207 (361)
T ss_dssp             EE
T ss_pred             EE
Confidence            73

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.37  E-value=2.7e-13  Score=153.15  Aligned_cols=61  Identities=30%  Similarity=0.598  Sum_probs=56.6

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      -|+++||+|+|+++ ++++|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.
T Consensus       671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~  731 (986)
T 2iw3_A          671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY  731 (986)
T ss_dssp             EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEE
T ss_pred             eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence            49999999999753 25799999999999999999999999999999999999999999983

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.36  E-value=2.3e-16  Score=159.73  Aligned_cols=118  Identities=13%  Similarity=0.193  Sum_probs=80.0

Q ss_pred             ccCHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccC-CCccccEE---------E
Q 010471          384 QVSPEQLTKYVLYCEWLIYATWRMVD-NLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKL-QRLMGHVQ---------F  452 (510)
Q Consensus       384 ~is~G~l~af~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~~-~~~~~~I~---------f  452 (510)
                      .++.|++.+++.+...+..+  .+.. ..+.+..+..+.+|+.++++.+.... ....... ....+.++         |
T Consensus        75 ~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~~~-~~~~~~ir~~~~~~i~l~~l~~~g~~  151 (330)
T 2pt7_A           75 AFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTVND-ETISISIRIPSKTTYPHSFFEEQGFY  151 (330)
T ss_dssp             GGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSSST-TCCEEEEECCCCCCCCHHHHHHTTTT
T ss_pred             CCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCccCC-CCceEEEeCCCCCCCCHHHHHhCCCc
Confidence            68999999888776554432  1111 11112222334568888776433211 1001000 11234566         8


Q ss_pred             EeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       453 ~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      +||+| |     .++++++|+++++|+.++|+|+||||||||+++|+|+++|++|.|+
T Consensus       152 ~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~  203 (330)
T 2pt7_A          152 NLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIIS  203 (330)
T ss_dssp             TTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEE
T ss_pred             Cchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEE
Confidence            89999 8     2599999999999999999999999999999999999999999874

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.23  E-value=1.7e-13  Score=123.71  Aligned_cols=57  Identities=19%  Similarity=0.110  Sum_probs=49.9

Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ++.+|++++|.+   ..+++++||+|++|++++|+||||||||||+|+|+|+. |++|+|.
T Consensus         8 ~~~~~~~~~~g~---~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~   64 (158)
T 1htw_A            8 IPDEFSMLRFGK---KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVK   64 (158)
T ss_dssp             ECSHHHHHHHHH---HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCC
T ss_pred             cCCHHHHHHHHH---HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEE
Confidence            334567778842   46999999999999999999999999999999999999 9999984

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.22  E-value=5e-12  Score=136.06  Aligned_cols=57  Identities=28%  Similarity=0.319  Sum_probs=49.5

Q ss_pred             EEE-EeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          450 VQF-VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       450 I~f-~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      -++ +||+++|++.  ..+|+|+| +|++||++||||+||||||||+|+|+|+++|++|++
T Consensus        21 ~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~   78 (538)
T 1yqt_A           21 EQLEEDCVHRYGVN--AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGD   78 (538)
T ss_dssp             ---CCCEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred             hhHhcCcEEEECCc--cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcc
Confidence            455 5999999642  25899999 999999999999999999999999999999999984

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.18  E-value=9.3e-12  Score=135.50  Aligned_cols=54  Identities=26%  Similarity=0.326  Sum_probs=49.9

Q ss_pred             EeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       453 ~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      +||+++|+++  ..+|+|+| +|++||++||||+||||||||+|+|+|+++|++|++
T Consensus        95 ~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~  148 (607)
T 3bk7_A           95 EDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCED  148 (607)
T ss_dssp             GSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTT
T ss_pred             CCeEEEECCC--CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCcc
Confidence            9999999642  25999999 999999999999999999999999999999999984

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.16  E-value=1.9e-11  Score=131.57  Aligned_cols=58  Identities=34%  Similarity=0.490  Sum_probs=53.9

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .++++|++++|.+    ..|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus       287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~  344 (538)
T 1yqt_A          287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIE  344 (538)
T ss_dssp             EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCC
T ss_pred             EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence            5999999999953    369999999999999999999999999999999999999999984

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.14  E-value=2.9e-11  Score=131.61  Aligned_cols=58  Identities=36%  Similarity=0.498  Sum_probs=54.0

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .++++|++++|.+    ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus       357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~  414 (607)
T 3bk7_A          357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE  414 (607)
T ss_dssp             EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCC
T ss_pred             EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence            5999999999953    369999999999999999999999999999999999999999984

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.11  E-value=3.8e-11  Score=128.98  Aligned_cols=59  Identities=22%  Similarity=0.316  Sum_probs=53.9

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ..++++|++.+|.+    ..|++.|++|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus       268 ~~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~  326 (538)
T 3ozx_A          268 TKMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVT  326 (538)
T ss_dssp             EEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEE
T ss_pred             ceEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence            36899999999953    368888999999999999999999999999999999999999983

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.06  E-value=1.6e-12  Score=130.37  Aligned_cols=81  Identities=20%  Similarity=0.210  Sum_probs=61.6

Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEE-----------------------e
Q 010471          419 GATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLT-----------------------I  475 (510)
Q Consensus       419 ~a~~rl~eil~~~~e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nislt-----------------------I  475 (510)
                      .++.++.+....+.+++   +........+.|+++||++.|.     ++++++++.                       +
T Consensus        16 ~~~~~l~~~~~~~~~~~---~~~~l~~~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   87 (312)
T 3aez_A           16 RQWRALRMSTPLALTEE---ELVGLRGLGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDR   87 (312)
T ss_dssp             HHHHGGGTTCCCCCCHH---HHHTTCCTTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSS
T ss_pred             HHHHHHHhcCCCCCCHH---HHHhccCCCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCC
Confidence            45566665555443322   1112233456799999999993     578887775                       8


Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG  507 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG  507 (510)
                      ++|+++||+|+||||||||+++|+|+++|++|
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G  119 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDH  119 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhccccCC
Confidence            99999999999999999999999999999877

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.06  E-value=1.3e-11  Score=129.28  Aligned_cols=59  Identities=22%  Similarity=0.268  Sum_probs=54.7

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      ..++++||++.|+.  +..+|+++ |+|++||+++|+|+||||||||+++|+|+++|++|.|
T Consensus       130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i  188 (438)
T 2dpy_A          130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  188 (438)
T ss_dssp             CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEE
T ss_pred             CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEE
Confidence            46899999999963  25699999 9999999999999999999999999999999999987

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.04  E-value=8.6e-11  Score=127.74  Aligned_cols=53  Identities=26%  Similarity=0.432  Sum_probs=47.6

Q ss_pred             eeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       454 nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      |++++|.+.  ...|++++ ++++||++|||||||||||||+|+|+|+++|++|+|
T Consensus        82 ~~~~~Y~~~--~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i  134 (608)
T 3j16_B           82 HVTHRYSAN--SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF  134 (608)
T ss_dssp             TEEEECSTT--SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred             CeEEEECCC--ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence            678999643  45788887 699999999999999999999999999999999987

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=98.97  E-value=2.6e-10  Score=120.07  Aligned_cols=54  Identities=17%  Similarity=0.172  Sum_probs=47.0

Q ss_pred             EEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       451 ~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ++.+++..+     ..+|+|+||+|++ |++||+||||||||||+++|+|+++|++|+|.
T Consensus         8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~   61 (483)
T 3euj_A            8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLN   61 (483)
T ss_dssp             EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCC
T ss_pred             ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEE
Confidence            455555543     2489999999999 99999999999999999999999999999984

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.95  E-value=7.1e-11  Score=120.03  Aligned_cols=59  Identities=19%  Similarity=0.141  Sum_probs=54.0

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      ..++.+||++.|+.  +..+++++ |+|.+||++||+|+||||||||+++|+|+.+|+.|.|
T Consensus        44 ~~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i  102 (347)
T 2obl_A           44 DPLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVL  102 (347)
T ss_dssp             CSTTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEE
T ss_pred             CCeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEE
Confidence            35889999999963  25699999 9999999999999999999999999999999999976

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.95  E-value=2.1e-10  Score=124.66  Aligned_cols=56  Identities=30%  Similarity=0.568  Sum_probs=50.4

Q ss_pred             EEeeeEECCCCCCCCccccceEEeeCC-----CEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          452 FVNISFHYPSRPTVPILNHVCLTIEAN-----EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       452 f~nVsF~Y~~~~~~~vL~nisltI~~G-----e~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      .++++|+|++.  ..+++|+||++++|     |++||+|+||||||||+++|+|+.+|++|+.
T Consensus       349 ~~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~  409 (608)
T 3j16_B          349 SASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD  409 (608)
T ss_dssp             SSSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC
T ss_pred             ccceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC
Confidence            36889999753  45899999999999     8899999999999999999999999999963

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=98.95  E-value=9.5e-12  Score=131.06  Aligned_cols=53  Identities=21%  Similarity=0.205  Sum_probs=49.4

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc-e-e
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-Q-V  509 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG-~-I  509 (510)
                      ..|+++||+|+|+         |+||++++||+++|+||||||||||+|+|+|++.|++| + |
T Consensus       117 ~mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI  171 (460)
T 2npi_A          117 TMKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPL  171 (460)
T ss_dssp             THHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCE
T ss_pred             chhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeE
Confidence            4588999999993         69999999999999999999999999999999999999 7 6

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.94  E-value=1.8e-11  Score=122.69  Aligned_cols=59  Identities=22%  Similarity=0.344  Sum_probs=54.5

Q ss_pred             ccccEEEEeeeEECCCCCCCCccccceEEe-------------------eCCCEEEEEcCCCCcHHHHHHHHhcccC--C
Q 010471          446 LMGHVQFVNISFHYPSRPTVPILNHVCLTI-------------------EANEVVAIVGLSGSGKSTFVNLLLRLYE--P  504 (510)
Q Consensus       446 ~~~~I~f~nVsF~Y~~~~~~~vL~nisltI-------------------~~Ge~vAIVG~SGSGKSTL~kLL~g~y~--p  504 (510)
                      ..+.|+++||++.|.     ++++++|+++                   ++|+++||+|+||||||||+++|+|++.  |
T Consensus        34 ~~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~  108 (308)
T 1sq5_A           34 INEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWP  108 (308)
T ss_dssp             HCTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTST
T ss_pred             CccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCC
Confidence            346799999999992     5999999998                   9999999999999999999999999999  9


Q ss_pred             CCcee
Q 010471          505 SDGQV  509 (510)
Q Consensus       505 ~sG~I  509 (510)
                      ++|+|
T Consensus       109 ~~G~i  113 (308)
T 1sq5_A          109 EHRRV  113 (308)
T ss_dssp             TCCCE
T ss_pred             CCCeE
Confidence            99987

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.92  E-value=1.5e-09  Score=122.88  Aligned_cols=50  Identities=24%  Similarity=0.353  Sum_probs=45.8

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      ..|+..|++++|++   +.+|+|+||+|++||++||+|+||||||||+|+|+|
T Consensus       434 ~~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          434 EDLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             CEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            46888899999964   469999999999999999999999999999999984

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.89  E-value=6e-10  Score=123.20  Aligned_cols=45  Identities=29%  Similarity=0.496  Sum_probs=34.2

Q ss_pred             CCccccceEEeeCCCEEEEEcCCCCcHHHHH---------------------HHHhcccCCCCcee
Q 010471          465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFV---------------------NLLLRLYEPSDGQV  509 (510)
Q Consensus       465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~---------------------kLL~g~y~p~sG~I  509 (510)
                      ..+|+||||+|++||++|||||||||||||+                     +++.++..|+.|.|
T Consensus        31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i   96 (670)
T 3ux8_A           31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAI   96 (670)
T ss_dssp             STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEE
T ss_pred             ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccce
Confidence            4699999999999999999999999999998                     89999999997655

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.87  E-value=2.3e-10  Score=118.64  Aligned_cols=46  Identities=37%  Similarity=0.522  Sum_probs=43.8

Q ss_pred             CCccccceEEeeCCC--------------------EEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          465 VPILNHVCLTIEANE--------------------VVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       465 ~~vL~nisltI~~Ge--------------------~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      +.+|+|||++|++|+                    .+||||+||||||||+|+|+|+++|++|+|.
T Consensus        36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~  101 (413)
T 1tq4_A           36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAK  101 (413)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCC
T ss_pred             HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEE
Confidence            358999999999999                    9999999999999999999999999999874

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.81  E-value=3.3e-10  Score=109.87  Aligned_cols=52  Identities=19%  Similarity=0.319  Sum_probs=35.1

Q ss_pred             ccEEEEee-eEECCCCCCCCccccceEEeeC---CCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          448 GHVQFVNI-SFHYPSRPTVPILNHVCLTIEA---NEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       448 ~~I~f~nV-sF~Y~~~~~~~vL~nisltI~~---Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      ..++++|| +|+|.+  +.++|+|+||+|++   |++++|+|+|||||||+.++|++.
T Consensus        16 ~~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~   71 (250)
T 3nwj_A           16 ALLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS   71 (250)
T ss_dssp             ------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            36999999 999932  35799999999999   999999999999999999999883

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.76  E-value=1.2e-10  Score=118.11  Aligned_cols=58  Identities=21%  Similarity=0.212  Sum_probs=52.1

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      .|+.+|++++|.+   +.+|+++|+++++|++++|+|++|||||||++.|+|++.|++|+|
T Consensus        29 ~ie~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v   86 (337)
T 2qm8_A           29 LAESRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKV   86 (337)
T ss_dssp             HHTCSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred             HHeeCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEE
Confidence            3667788888842   469999999999999999999999999999999999999999987

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.73  E-value=2.1e-09  Score=107.13  Aligned_cols=43  Identities=26%  Similarity=0.357  Sum_probs=40.0

Q ss_pred             cccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       468 L~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ++++||++++|++++|||+|||||||+++.|+|+++|++|+|.
T Consensus        90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~  132 (302)
T 3b9q_A           90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL  132 (302)
T ss_dssp             CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred             ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            4678899999999999999999999999999999999999873

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=98.72  E-value=1.7e-09  Score=109.66  Aligned_cols=75  Identities=15%  Similarity=0.142  Sum_probs=58.9

Q ss_pred             HHHHHHhhcCCCCCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccc--------------cceEEeeCCCEEEEEcC
Q 010471          421 TEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILN--------------HVCLTIEANEVVAIVGL  486 (510)
Q Consensus       421 ~~rl~eil~~~~e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~--------------nisltI~~Ge~vAIVG~  486 (510)
                      .||.+++++.++.     ++..+....+.|+|+||+|.||.+  +.+|+              |++++|.+||+++|||+
T Consensus       110 ~ER~faLl~v~~v-----n~~~pe~~~~ri~Fe~ltp~yP~e--r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~  182 (422)
T 3ice_A          110 GERYFALLKVNEV-----NFDKPENARNKILFENLTPLHANS--RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAP  182 (422)
T ss_dssp             SCCSEEEEEEEEE-----SSSCHHHHTTSCCTTTSCEESCCS--BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECC
T ss_pred             cchHHHHhccCcc-----cCCChhhhcCCceeccccccCCCC--ccccccCCCCcccccceeeeeeeeecCCcEEEEecC
Confidence            4566666654332     112223346789999999999964  67999              99999999999999999


Q ss_pred             CCCcHHHHHHHHhccc
Q 010471          487 SGSGKSTFVNLLLRLY  502 (510)
Q Consensus       487 SGSGKSTL~kLL~g~y  502 (510)
                      ||||||||+++|+|+.
T Consensus       183 sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          183 PKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             SSSSHHHHHHHHHHHH
T ss_pred             CCCChhHHHHHHHHHH
Confidence            9999999999999864

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.69  E-value=2.8e-09  Score=114.44  Aligned_cols=46  Identities=17%  Similarity=0.244  Sum_probs=43.4

Q ss_pred             CCccccceE-EeeCCCEEEEEcCCCCcHHHHHHH--HhcccCCCCceeC
Q 010471          465 VPILNHVCL-TIEANEVVAIVGLSGSGKSTFVNL--LLRLYEPSDGQVC  510 (510)
Q Consensus       465 ~~vL~nisl-tI~~Ge~vAIVG~SGSGKSTL~kL--L~g~y~p~sG~I~  510 (510)
                      .++|+|+|+ +|++||.++|+|+||||||||+++  +.|+++|++|.|+
T Consensus        25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~   73 (525)
T 1tf7_A           25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVF   73 (525)
T ss_dssp             CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEE
T ss_pred             chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence            579999999 999999999999999999999999  7899999999873

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.66  E-value=3e-09  Score=108.94  Aligned_cols=43  Identities=28%  Similarity=0.403  Sum_probs=40.3

Q ss_pred             ccccceEEeeC--CCEEEEEcCCCCcHHHHHHHHhcccCCCC----cee
Q 010471          467 ILNHVCLTIEA--NEVVAIVGLSGSGKSTFVNLLLRLYEPSD----GQV  509 (510)
Q Consensus       467 vL~nisltI~~--Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s----G~I  509 (510)
                      +.+.|+++|++  |+++||||+||||||||+++|+|+|+|++    |+|
T Consensus       157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i  205 (365)
T 1lw7_A          157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGRE  205 (365)
T ss_dssp             GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHH
T ss_pred             ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHH
Confidence            46789999999  99999999999999999999999999999    765

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.65  E-value=3.1e-09  Score=110.16  Aligned_cols=50  Identities=24%  Similarity=0.336  Sum_probs=40.3

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCE--EEEEcCCCCcHHHHHHHHhccc
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~--vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      ..++.++ +++|++   .+ |+|+||++++|+.  +||||+||||||||+++|+|+.
T Consensus        15 ~~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           15 RTVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             --CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             ceEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            3566667 888964   35 9999999999999  9999999999999999999985

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.64  E-value=4.9e-09  Score=106.72  Aligned_cols=42  Identities=26%  Similarity=0.382  Sum_probs=39.2

Q ss_pred             ccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       469 ~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      +++||++++|++++|||+|||||||+++.|+|+++|++|+|.
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~  189 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL  189 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEE
Confidence            468889999999999999999999999999999999999873

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.64  E-value=5.1e-09  Score=110.05  Aligned_cols=43  Identities=28%  Similarity=0.367  Sum_probs=40.4

Q ss_pred             cccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       468 L~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      -+|+||++++|++++|||+|||||||++++|+|++.|++|+|.
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~  325 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVM  325 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEE
Confidence            3689999999999999999999999999999999999999873

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.60  E-value=1.9e-08  Score=104.42  Aligned_cols=52  Identities=31%  Similarity=0.307  Sum_probs=40.1

Q ss_pred             cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471          447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG  507 (510)
Q Consensus       447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG  507 (510)
                      .+.|+++||+++|++   ..+++|+||+|      +|||+||||||||++.|+|...|..|
T Consensus         9 ~~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~   60 (418)
T 2qag_C            9 EGYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE   60 (418)
T ss_dssp             ------CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC
T ss_pred             cCcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC
Confidence            356999999999963   46999999998      99999999999999999999875443

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.59  E-value=1.3e-08  Score=112.49  Aligned_cols=35  Identities=46%  Similarity=0.603  Sum_probs=32.7

Q ss_pred             CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471          465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL  499 (510)
Q Consensus       465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~  499 (510)
                      .++|+||||+|++||++||+||||||||||+++++
T Consensus       335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred             ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence            46999999999999999999999999999998764

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.58  E-value=7.2e-09  Score=106.33  Aligned_cols=42  Identities=19%  Similarity=0.370  Sum_probs=38.5

Q ss_pred             CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC-Ccee
Q 010471          466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQV  509 (510)
Q Consensus       466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~-sG~I  509 (510)
                      ++|++++  +++|+.++|||||||||||++++|+|+|+|+ +|+|
T Consensus       126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I  168 (372)
T 2ewv_A          126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHI  168 (372)
T ss_dssp             SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEE
T ss_pred             HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEE
Confidence            3677776  8999999999999999999999999999998 8987

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.54  E-value=1.6e-08  Score=103.06  Aligned_cols=56  Identities=20%  Similarity=0.283  Sum_probs=48.5

Q ss_pred             EeeeEECCCCCCCCccccceE-------EeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC-Ccee
Q 010471          453 VNISFHYPSRPTVPILNHVCL-------TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQV  509 (510)
Q Consensus       453 ~nVsF~Y~~~~~~~vL~nisl-------tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~-sG~I  509 (510)
                      .+++|+|... ..+.|+++.+       ...+|+.++|+|||||||||++++|+|+++|+ +|.|
T Consensus        92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i  155 (356)
T 3jvv_A           92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHI  155 (356)
T ss_dssp             EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEE
T ss_pred             cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEE
Confidence            5888998654 4678999887       78899999999999999999999999999997 5654

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=98.52  E-value=2e-08  Score=112.46  Aligned_cols=47  Identities=26%  Similarity=0.451  Sum_probs=41.7

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHH-Hhccc
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL-LLRLY  502 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kL-L~g~y  502 (510)
                      ..|+++|+++.        +|+||||+|++||++||+|+||||||||++. |.|+.
T Consensus       501 ~~L~v~~l~~~--------~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l  548 (842)
T 2vf7_A          501 GWLELNGVTRN--------NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL  548 (842)
T ss_dssp             CEEEEEEEEET--------TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred             ceEEEEeeeec--------ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence            46999999862        6999999999999999999999999999996 76654

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.50  E-value=4.5e-09  Score=109.29  Aligned_cols=56  Identities=16%  Similarity=0.280  Sum_probs=44.9

Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ++++|++|.|+.   ..+|+++ + .++|+.++|+|||||||||+++.|+|+++|++|+|.
T Consensus       144 ~~l~~Lg~~~~~---~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~  199 (418)
T 1p9r_A          144 LDLHSLGMTAHN---HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNIL  199 (418)
T ss_dssp             CCGGGSCCCHHH---HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEE
T ss_pred             CCHHHcCCCHHH---HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEE
Confidence            445556555531   3467777 4 389999999999999999999999999999999873

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.50  E-value=7.7e-09  Score=112.84  Aligned_cols=58  Identities=28%  Similarity=0.432  Sum_probs=33.8

Q ss_pred             cEEEEeeeEECCCCCCCCccccc----------eEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-CCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHV----------CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~ni----------sltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-~sG~I~  510 (510)
                      .|+++|+++.|++. .+++|+.+          ++++|.   +||||+||||||||+++|+|++.| ++|+|+
T Consensus        10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt   78 (608)
T 3szr_A           10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVT   78 (608)
T ss_dssp             ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CC
T ss_pred             hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEE
Confidence            58999999999642 23566555          477776   999999999999999999999989 799874

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.50  E-value=2e-08  Score=99.59  Aligned_cols=44  Identities=32%  Similarity=0.378  Sum_probs=41.5

Q ss_pred             CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc-ee
Q 010471          466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QV  509 (510)
Q Consensus       466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG-~I  509 (510)
                      ++|+++++.+++|+.++|+|+||||||||++.|++...|++| .|
T Consensus        23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v   67 (296)
T 1cr0_A           23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKV   67 (296)
T ss_dssp             TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCE
T ss_pred             HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeE
Confidence            489999999999999999999999999999999999999988 44

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.48  E-value=3.9e-08  Score=97.98  Aligned_cols=34  Identities=35%  Similarity=0.525  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      +|++++|||+|||||||+++.|+|+++|++|+|.
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~  134 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVM  134 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEE
Confidence            7899999999999999999999999999999873

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.47  E-value=1.9e-08  Score=107.30  Aligned_cols=45  Identities=29%  Similarity=0.395  Sum_probs=42.5

Q ss_pred             CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      .++++++++.+++|+.++|+|+|||||||+++.|+|+++|++|.|
T Consensus       247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~gii  291 (511)
T 2oap_1          247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVV  291 (511)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEE
T ss_pred             HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEE
Confidence            347899999999999999999999999999999999999999986

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.41  E-value=6.5e-08  Score=96.33  Aligned_cols=38  Identities=24%  Similarity=0.309  Sum_probs=31.3

Q ss_pred             EEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       473 ltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      +++.+|++++|+|+||||||||+++|+|+..|++|+|.
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~  201 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS  201 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhccccccccccee
Confidence            46778999999999999999999999999999999874

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.38  E-value=1.9e-07  Score=107.10  Aligned_cols=53  Identities=21%  Similarity=0.214  Sum_probs=42.0

Q ss_pred             ccEEEEe-----eeEECCCCCCCCccccceEEeeC-------CCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          448 GHVQFVN-----ISFHYPSRPTVPILNHVCLTIEA-------NEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       448 ~~I~f~n-----VsF~Y~~~~~~~vL~nisltI~~-------Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      +.|+++|     |+++|+++  .+|++|++|++++       |+.++|+|||||||||++|.+ |+..
T Consensus       749 ~~l~i~~~rHP~l~~~~~~~--~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~  813 (1022)
T 2o8b_B          749 PFLELKGSRHPCITKTFFGD--DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA  813 (1022)
T ss_dssp             CCEEEEEECCCC------CC--CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred             ceEEEEeccccEEEEEecCC--ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence            4699999     99999532  5799999999988       999999999999999999999 8764

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.38  E-value=1.6e-07  Score=104.48  Aligned_cols=58  Identities=24%  Similarity=0.216  Sum_probs=48.8

Q ss_pred             cccEEEEeeeEECCCC--CCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-CCCcee
Q 010471          447 MGHVQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQV  509 (510)
Q Consensus       447 ~~~I~f~nVsF~Y~~~--~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-p~sG~I  509 (510)
                      .+.|++++.  +||--  .+..|++|+||+   |+.++|+|||||||||++|+++|+.. |+.|.+
T Consensus       548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~  608 (765)
T 1ewq_A          548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSF  608 (765)
T ss_dssp             SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCce
Confidence            567999988  56631  235799999999   99999999999999999999999975 788864

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.35  E-value=1e-07  Score=96.68  Aligned_cols=44  Identities=27%  Similarity=0.298  Sum_probs=37.2

Q ss_pred             CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-CCCceeC
Q 010471          466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQVC  510 (510)
Q Consensus       466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-p~sG~I~  510 (510)
                      .-++++++. .+|++++|+|+||||||||+|.|+|+.. |..|+|.
T Consensus       204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~  248 (358)
T 2rcn_A          204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVS  248 (358)
T ss_dssp             BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---
T ss_pred             cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCcc
Confidence            357788875 4899999999999999999999999999 9999873

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.34  E-value=5.8e-08  Score=96.70  Aligned_cols=38  Identities=18%  Similarity=0.290  Sum_probs=26.5

Q ss_pred             EEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       473 ltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      +++.+|++++|+|+||+|||||+|.|+|+..|..|+|.
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~  205 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS  205 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhccccccccccee
Confidence            56779999999999999999999999999999999873

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.32  E-value=1.2e-07  Score=95.36  Aligned_cols=37  Identities=30%  Similarity=0.368  Sum_probs=34.2

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ..++|++++|||+|||||||+++.|+|+++|++|+|.
T Consensus       125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~  161 (328)
T 3e70_C          125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVV  161 (328)
T ss_dssp             SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEE
Confidence            3468999999999999999999999999999999873

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=98.26  E-value=4e-07  Score=102.41  Aligned_cols=43  Identities=40%  Similarity=0.519  Sum_probs=38.3

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL  499 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~  499 (510)
                      .++++|++.        .+|+||||+|++||.+||+|+||||||||++.|+
T Consensus       629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll  671 (972)
T 2r6f_A          629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  671 (972)
T ss_dssp             EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred             EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence            588888851        3799999999999999999999999999999864

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.22  E-value=3.9e-07  Score=90.71  Aligned_cols=37  Identities=24%  Similarity=0.254  Sum_probs=33.4

Q ss_pred             EEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       473 ltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      +++.+|++++|+|+||||||||+|.|+ +.+|++|+|.
T Consensus       160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~  196 (302)
T 2yv5_A          160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVS  196 (302)
T ss_dssp             HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC-
T ss_pred             HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccc
Confidence            355689999999999999999999999 9999999984

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=98.22  E-value=3.4e-07  Score=103.36  Aligned_cols=30  Identities=37%  Similarity=0.557  Sum_probs=29.0

Q ss_pred             CccccceEEeeCCCEEEEEcCCCCcHHHHH
Q 010471          466 PILNHVCLTIEANEVVAIVGLSGSGKSTFV  495 (510)
Q Consensus       466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~  495 (510)
                      ..|+||||+|++|+.+||+|+||||||||+
T Consensus       598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl  627 (916)
T 3pih_A          598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLV  627 (916)
T ss_dssp             TTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred             ccccccceEEcCCcEEEEEccCCCChhhhH
Confidence            579999999999999999999999999997

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=98.21  E-value=3.3e-07  Score=95.05  Aligned_cols=37  Identities=27%  Similarity=0.378  Sum_probs=34.4

Q ss_pred             ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471          467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP  504 (510)
Q Consensus       467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p  504 (510)
                      +++|+||++++| +++|||+||||||||++.|.++..+
T Consensus        50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~   86 (415)
T 4aby_A           50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGG   86 (415)
T ss_dssp             TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred             ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCC
Confidence            799999999999 9999999999999999999777754

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.16  E-value=2.5e-06  Score=96.74  Aligned_cols=61  Identities=18%  Similarity=0.241  Sum_probs=49.3

Q ss_pred             ccEEEEeeeEECCCC--CCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHH--------hcccCCCCce
Q 010471          448 GHVQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL--------LRLYEPSDGQ  508 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~--~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL--------~g~y~p~sG~  508 (510)
                      +.|++++...-+-..  .+..|++|+||++++|+.++|+|||||||||++|.+        .|.|-|.++.
T Consensus       630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~  700 (934)
T 3thx_A          630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESA  700 (934)
T ss_dssp             CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEE
T ss_pred             cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccc
Confidence            468888865444321  135799999999999999999999999999999999        8888887653

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.09  E-value=6.1e-07  Score=91.87  Aligned_cols=37  Identities=27%  Similarity=0.323  Sum_probs=35.2

Q ss_pred             CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      .+|+++|+++++|+.++|+||+|||||||+++|+|.+
T Consensus       157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            5899999999999999999999999999999999865

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.06  E-value=5.7e-07  Score=90.07  Aligned_cols=53  Identities=25%  Similarity=0.330  Sum_probs=43.2

Q ss_pred             eeeEECCCCCCCCccccceEEeeCCC------EEEEEcCCCCcHHHHHHHHhcccC--CCCcee
Q 010471          454 NISFHYPSRPTVPILNHVCLTIEANE------VVAIVGLSGSGKSTFVNLLLRLYE--PSDGQV  509 (510)
Q Consensus       454 nVsF~Y~~~~~~~vL~nisltI~~Ge------~vAIVG~SGSGKSTL~kLL~g~y~--p~sG~I  509 (510)
                      .+++.|.+   .+.|++++..+.+++      ++||+|+|||||||++++|.++++  |++|.+
T Consensus        65 ll~~~~~~---~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v  125 (321)
T 3tqc_A           65 LLSFYVTA---RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV  125 (321)
T ss_dssp             HHHHHHHH---HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred             HHHHhhcc---hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE
Confidence            34555632   358889999998887      999999999999999999999998  566664

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.05  E-value=4.8e-07  Score=89.75  Aligned_cols=54  Identities=20%  Similarity=0.241  Sum_probs=47.2

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      .+.++|+++.|++.   .  ++++++  +|++++++|++||||||++..|++++.++.|+|
T Consensus        76 ~~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v  129 (295)
T 1ls1_A           76 ATVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRP  129 (295)
T ss_dssp             HHHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence            46788899999532   2  788998  999999999999999999999999999988876

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.03  E-value=7.1e-07  Score=81.36  Aligned_cols=37  Identities=22%  Similarity=0.295  Sum_probs=33.5

Q ss_pred             eEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCce
Q 010471          472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ  508 (510)
Q Consensus       472 sltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~  508 (510)
                      ++++++|+.++|+||+|||||||++.+++.+.|++|.
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~   68 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI   68 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC
Confidence            4677899999999999999999999999999887773

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.01  E-value=9.1e-07  Score=86.76  Aligned_cols=37  Identities=19%  Similarity=0.238  Sum_probs=34.9

Q ss_pred             CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471          466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP  504 (510)
Q Consensus       466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p  504 (510)
                      .+++++++++++|  ++|+||+|||||||++.|+|.+.+
T Consensus        34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~   70 (274)
T 2x8a_A           34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL   70 (274)
T ss_dssp             HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC
Confidence            4899999999999  999999999999999999998876

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.01  E-value=1.1e-06  Score=88.19  Aligned_cols=43  Identities=19%  Similarity=0.289  Sum_probs=38.4

Q ss_pred             ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      +++++||++++|++++++|++||||||++..|++.+.++.|+|
T Consensus        94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kV  136 (320)
T 1zu4_A           94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKV  136 (320)
T ss_dssp             --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence            4578888889999999999999999999999999999988876

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.98  E-value=2.5e-06  Score=79.29  Aligned_cols=31  Identities=32%  Similarity=0.405  Sum_probs=24.5

Q ss_pred             eEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       472 sltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      .++-++|+.++|+|+|||||||++++|++.+
T Consensus        23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            4677899999999999999999999998754

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.95  E-value=1.9e-06  Score=87.85  Aligned_cols=42  Identities=24%  Similarity=0.370  Sum_probs=33.8

Q ss_pred             CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhc--ccCCCCcee
Q 010471          465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQV  509 (510)
Q Consensus       465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g--~y~p~sG~I  509 (510)
                      ..+|+++++++|   .|++||++|||||||++.|.|  +.++.+|.+
T Consensus        24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~v   67 (360)
T 3t34_A           24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV   67 (360)
T ss_dssp             SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred             ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence            358999999999   999999999999999999999  777777754

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=97.95  E-value=3.2e-06  Score=94.56  Aligned_cols=52  Identities=19%  Similarity=0.200  Sum_probs=41.9

Q ss_pred             ccEEEEeeeEECCCC----CCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          448 GHVQFVNISFHYPSR----PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~----~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +.|++++.  ++|=-    .+..|++|+||+ ++|+.++|+|||||||||++|+++|+.
T Consensus       576 ~~i~i~~~--rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          576 PGIRITEG--RHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             SCEEEEEE--CCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEec--cccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            35777653  34410    135799999999 999999999999999999999999874

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.94  E-value=1.5e-06  Score=88.35  Aligned_cols=48  Identities=25%  Similarity=0.329  Sum_probs=40.0

Q ss_pred             EeeeEECCCCCCCCccccc-eEEeeCCCEEEEEcCCCCcHHHHHHHHhccc--CCCC
Q 010471          453 VNISFHYPSRPTVPILNHV-CLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSD  506 (510)
Q Consensus       453 ~nVsF~Y~~~~~~~vL~ni-sltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y--~p~s  506 (510)
                      +.+++.++      .|+++ +..|++|++++|+|+||||||||++.+++.+  +|++
T Consensus       111 ~~isTG~~------~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~  161 (349)
T 1pzn_A          111 GRISTGSK------SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE  161 (349)
T ss_dssp             CEECCSCH------HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGG
T ss_pred             CeecCCCH------HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhc
Confidence            45666553      45555 5899999999999999999999999999999  6766

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.94  E-value=2.3e-06  Score=75.92  Aligned_cols=35  Identities=23%  Similarity=0.391  Sum_probs=31.8

Q ss_pred             ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471          467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG  507 (510)
Q Consensus       467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG  507 (510)
                      +|+++     +|+.++|+|++|||||||++++++.+.+ +|
T Consensus        30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g   64 (149)
T 2kjq_A           30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AG   64 (149)
T ss_dssp             HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TT
T ss_pred             HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cC
Confidence            57777     8999999999999999999999999987 46

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=97.93  E-value=2.7e-06  Score=88.17  Aligned_cols=34  Identities=24%  Similarity=0.350  Sum_probs=32.8

Q ss_pred             cccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       468 L~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      -++++|+++.|+.++|||++|||||||++.|++.
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~  180 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA  180 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred             EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence            3799999999999999999999999999999998

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=97.93  E-value=2.7e-06  Score=96.23  Aligned_cols=51  Identities=20%  Similarity=0.275  Sum_probs=41.4

Q ss_pred             ccEEEEeeeEECC------CCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471          448 GHVQFVNISFHYP------SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       448 ~~I~f~nVsF~Y~------~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      +.|++++.  ++|      +..+..|++|+||++++|+.++|+|||||||||++|.+.+
T Consensus       639 ~~i~i~~~--rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~  695 (918)
T 3thx_B          639 RKIVIKNG--RHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL  695 (918)
T ss_dssp             CEEEEEEE--CCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred             CcEEEEec--cchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence            46777763  344      1124679999999999999999999999999999999864

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.91  E-value=1.9e-07  Score=94.34  Aligned_cols=58  Identities=19%  Similarity=0.313  Sum_probs=47.7

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCC-------CEEEEEcCCCCcHHHHHHHHhccc----CCCCcee
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEAN-------EVVAIVGLSGSGKSTFVNLLLRLY----EPSDGQV  509 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~G-------e~vAIVG~SGSGKSTL~kLL~g~y----~p~sG~I  509 (510)
                      .++.++++..|.+   ..+++++++.|++|       +.++|+||+|+|||||++++++..    .|.+|++
T Consensus        18 ~lr~~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~   86 (334)
T 1in4_A           18 FLRPKSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPV   86 (334)
T ss_dssp             TTSCSSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTT
T ss_pred             HcCCccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechH
Confidence            3555567767742   35999999999987       899999999999999999999998    6777764

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.87  E-value=2.8e-06  Score=84.54  Aligned_cols=39  Identities=26%  Similarity=0.437  Sum_probs=34.8

Q ss_pred             ceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       471 isltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      ++++.++|++++|||++||||||+++.|++++.++.|+|
T Consensus        97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV  135 (306)
T 1vma_A           97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSV  135 (306)
T ss_dssp             CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEE
Confidence            445567899999999999999999999999999988876

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.85  E-value=3.6e-06  Score=81.06  Aligned_cols=50  Identities=16%  Similarity=0.191  Sum_probs=42.8

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      ..+++++...|.+   ..+++++++++++|  ++|+||+|||||||++.+++...
T Consensus        25 ~~~l~~l~~~~~~---~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~   74 (254)
T 1ixz_A           25 KEELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR   74 (254)
T ss_dssp             HHHHHHHHHHHHC---HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC
Confidence            3556788877742   35899999999999  99999999999999999999765

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.84  E-value=3.4e-06  Score=90.50  Aligned_cols=36  Identities=33%  Similarity=0.334  Sum_probs=33.2

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc-ee
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QV  509 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG-~I  509 (510)
                      .+++|++++|+|+||||||||+++|+|.+.|++| +|
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i  401 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCV  401 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCE
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceE
Confidence            5789999999999999999999999999999987 44

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.82  E-value=4.3e-06  Score=81.84  Aligned_cols=49  Identities=16%  Similarity=0.190  Sum_probs=41.6

Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      -+++++...|.+   ..+++++++++++|  ++|+||||||||||++.|++...
T Consensus        50 ~~l~~l~~~~~~---~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~   98 (278)
T 1iy2_A           50 EELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR   98 (278)
T ss_dssp             HHHHHHHHHHHC---HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC
Confidence            345677777742   35899999999999  99999999999999999999875

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.76  E-value=2.8e-06  Score=91.03  Aligned_cols=53  Identities=13%  Similarity=0.136  Sum_probs=42.3

Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCce
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ  508 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~  508 (510)
                      ++.+++++.|++-  ..+|++   .+++|++++|+|+||||||||++.++|...|+ |+
T Consensus       258 ~~~~~l~~g~~~l--d~vL~g---~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~  310 (525)
T 1tf7_A          258 SSNVRVSSGVVRL--DEMCGG---GFFKDSIILATGATGTGKTLLVSRFVENACAN-KE  310 (525)
T ss_dssp             CCCCEECCSCHHH--HHHTTS---SEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC
T ss_pred             cccceeecChHHH--HHHhCC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC
Confidence            4667777777521  125554   99999999999999999999999999999885 54

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.69  E-value=9.4e-06  Score=80.15  Aligned_cols=29  Identities=21%  Similarity=0.140  Sum_probs=26.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPS  505 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~  505 (510)
                      ++++|||+|+||||||||+++|.++++++
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~   58 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK   58 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            67899999999999999999999999763

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.61  E-value=8e-06  Score=82.58  Aligned_cols=44  Identities=23%  Similarity=0.292  Sum_probs=39.2

Q ss_pred             CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      .+++++++++++|++++|+|++|+||||+++.|++.+.+..|++
T Consensus        44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v   87 (341)
T 2p67_A           44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKV   87 (341)
T ss_dssp             HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred             HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence            58899999999999999999999999999999999887665543

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.59  E-value=1.8e-05  Score=78.30  Aligned_cols=32  Identities=19%  Similarity=0.277  Sum_probs=30.3

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG  507 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG  507 (510)
                      ++|+++++||++||||||+++.|++.+.+++|
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G  134 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH  134 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence            47999999999999999999999999999888

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=97.59  E-value=3.3e-05  Score=86.59  Aligned_cols=40  Identities=30%  Similarity=0.505  Sum_probs=35.0

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHH
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFV  495 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~  495 (510)
                      ..|++++..        +.=|||||++||.|+.|+|.|.||||||||+
T Consensus        14 ~~I~i~gar--------~hNLkni~v~iP~~~l~viTGvSGSGKSSLa   53 (842)
T 2vf7_A           14 GFVQVRGAR--------QHNLKDISVKVPRDALVVFTGVSGSGKSSLA   53 (842)
T ss_dssp             TEEEEEEEC--------STTCCSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred             CeEEEeecc--------ccCCCCeeEEecCCCEEEEECCCCCCHHHHH
Confidence            468888743        2359999999999999999999999999998

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.50  E-value=4.8e-05  Score=85.75  Aligned_cols=40  Identities=28%  Similarity=0.445  Sum_probs=34.1

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHH
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFV  495 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~  495 (510)
                      ..|++++..        +.=|||||++||+++.|.|.|.||||||||+
T Consensus        22 ~~I~i~gar--------~hNLkni~v~iP~~~lvv~tG~SGSGKSSLa   61 (972)
T 2r6f_A           22 DKIIVKGAR--------AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLA   61 (972)
T ss_dssp             CEEEEEEEC--------SSSCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred             ceEEEeccc--------cccCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence            457777632        2359999999999999999999999999997

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.46  E-value=4.5e-05  Score=69.96  Aligned_cols=25  Identities=32%  Similarity=0.375  Sum_probs=23.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcccCC
Q 010471          480 VVAIVGLSGSGKSTFVNLLLRLYEP  504 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g~y~p  504 (510)
                      +++|||++|||||||++.+.|...|
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~~~   55 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNEFN   55 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCC
Confidence            7999999999999999999998754

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.46  E-value=5.1e-05  Score=74.15  Aligned_cols=30  Identities=30%  Similarity=0.307  Sum_probs=27.5

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      -+++|+.++|+|+||||||||++.+++...
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            479999999999999999999999998665

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.45  E-value=5.7e-05  Score=77.86  Aligned_cols=34  Identities=18%  Similarity=0.244  Sum_probs=28.3

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHH--HhcccCCCCc
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNL--LLRLYEPSDG  507 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kL--L~g~y~p~sG  507 (510)
                      -|++|+.++|+|+||||||||++.  +.+..+|+.|
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~G  209 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIG  209 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccC
Confidence            689999999999999999999994  4566666444

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.43  E-value=2.1e-05  Score=85.72  Aligned_cols=42  Identities=17%  Similarity=0.251  Sum_probs=40.0

Q ss_pred             CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC
Q 010471          465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD  506 (510)
Q Consensus       465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s  506 (510)
                      ..+++++++.+++|+.+.|+||||||||||++.|+++.++..
T Consensus        47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~   88 (604)
T 3k1j_A           47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTET   88 (604)
T ss_dssp             HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred             hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence            469999999999999999999999999999999999998887

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.35  E-value=5.8e-05  Score=78.26  Aligned_cols=54  Identities=20%  Similarity=0.240  Sum_probs=45.5

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      .+..++++..|.+.  .   ++++++  +|++++++|++||||||++..|++.+.++.|.|
T Consensus        76 ~~v~~~L~~~~~~~--~---~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~V  129 (425)
T 2ffh_A           76 ATVYEALKEALGGE--A---RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRP  129 (425)
T ss_dssp             HHHHHHHHHHTTSS--C---CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred             HHHHHHHHHHhCCC--c---ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence            45666788888532  1   678888  899999999999999999999999999987776

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.34  E-value=5.9e-05  Score=76.44  Aligned_cols=34  Identities=24%  Similarity=0.393  Sum_probs=29.6

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      +++.+|+|+|++|||||||++.|.|.+.|++|+|
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v  105 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKL  105 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeE
Confidence            4678999999999999999999999887776654

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.32  E-value=0.00013  Score=64.47  Aligned_cols=34  Identities=29%  Similarity=0.576  Sum_probs=25.5

Q ss_pred             ccceEEeeCCCEEEEEcCCCCcHHHHHHHHh-cccC
Q 010471          469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLYE  503 (510)
Q Consensus       469 ~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~-g~y~  503 (510)
                      ++.++++++| .++|+||+||||||+++.|. .+|.
T Consensus        15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l~g   49 (149)
T 1f2t_A           15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGLYW   49 (149)
T ss_dssp             SSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred             cceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHHcC
Confidence            3344555554 89999999999999999886 4443

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.30  E-value=4.5e-05  Score=81.95  Aligned_cols=57  Identities=9%  Similarity=0.192  Sum_probs=47.1

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      .+-.++|..+|.+   ..+++++++++ +|+.+.|+||||||||||++.|++...+..|+|
T Consensus        83 i~G~~~vk~~i~~---~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i  139 (543)
T 3m6a_A           83 HHGLEKVKERILE---YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRI  139 (543)
T ss_dssp             CSSCHHHHHHHHH---HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred             hccHHHHHHHHHH---HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEE
Confidence            3556677777732   34788999998 899999999999999999999999998877765

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.24  E-value=2.8e-05  Score=79.25  Aligned_cols=52  Identities=29%  Similarity=0.328  Sum_probs=36.5

Q ss_pred             ccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC
Q 010471          446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD  506 (510)
Q Consensus       446 ~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s  506 (510)
                      ..+.|.++|++..|..   +.++++++++|      +|||++|+|||||++.|.+.-.+..
T Consensus        14 ~~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~   65 (361)
T 2qag_A           14 TPGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE   65 (361)
T ss_dssp             -------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC---
T ss_pred             CCceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCC
Confidence            3468999999999853   35899999987      9999999999999999987654433

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.21  E-value=5.4e-05  Score=74.95  Aligned_cols=55  Identities=22%  Similarity=0.296  Sum_probs=44.1

Q ss_pred             cEEEEeeeEECCCCCCCCcccc-ceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          449 HVQFVNISFHYPSRPTVPILNH-VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~n-isltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      .+..++++..|.+.  .   ++ ++++.+ |++++++|++|+||||++..|++.+.+..|++
T Consensus        74 ~~~~~~l~~~~~~~--~---~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v  129 (297)
T 1j8m_F           74 KIVYDELSNLFGGD--K---EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKV  129 (297)
T ss_dssp             HHHHHHHHHHTTCS--C---CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHHhccc--c---ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence            35566777777532  1   56 888877 99999999999999999999999998877665

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.12  E-value=0.00015  Score=76.84  Aligned_cols=49  Identities=16%  Similarity=0.190  Sum_probs=40.1

Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      .+++++...|.+   ..+++++++++|+|  +.|+||+|+|||||++.+++...
T Consensus        41 ~~l~~lv~~l~~---~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~   89 (499)
T 2dhr_A           41 EELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR   89 (499)
T ss_dssp             HHHHHHHHHHHC---GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhc---hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence            345566655632   35899999999999  99999999999999999998764

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.06  E-value=0.00022  Score=71.69  Aligned_cols=30  Identities=27%  Similarity=0.438  Sum_probs=27.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc-ccCCCCcee
Q 010471          480 VVAIVGLSGSGKSTFVNLLLR-LYEPSDGQV  509 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g-~y~p~sG~I  509 (510)
                      .+.|+||+|+||||+++.++| ++.|++|+|
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i   68 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRL   68 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHHSCTTCCC-
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCCCCCeE
Confidence            399999999999999999999 899998865

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.93  E-value=0.0002  Score=68.88  Aligned_cols=30  Identities=20%  Similarity=0.361  Sum_probs=26.2

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      ..+++..+.|+|++||||||+++.|.+.+.
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            455788999999999999999999988764

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.91  E-value=0.0003  Score=67.55  Aligned_cols=35  Identities=20%  Similarity=0.281  Sum_probs=25.6

Q ss_pred             ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      .+++++...++|  +.|+||+|+||||+++.+++.+.
T Consensus        36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence            456666666666  99999999999999999998764

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=96.90  E-value=0.00029  Score=71.32  Aligned_cols=36  Identities=22%  Similarity=0.264  Sum_probs=32.0

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      =+++|+.+.|.||+|||||||+..+++...+..|.+
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V   92 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA   92 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence            489999999999999999999999998887776654

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.74  E-value=0.00012  Score=73.60  Aligned_cols=43  Identities=16%  Similarity=0.243  Sum_probs=37.8

Q ss_pred             CCccccceEEeeCCCE--EEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471          465 VPILNHVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLYEPSDG  507 (510)
Q Consensus       465 ~~vL~nisltI~~Ge~--vAIVG~SGSGKSTL~kLL~g~y~p~sG  507 (510)
                      ..++++++..|+.|+.  +.+.||+|+||||+++.+++...+..|
T Consensus        31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~   75 (340)
T 1sxj_C           31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY   75 (340)
T ss_dssp             HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence            3589999999999998  999999999999999999998655443

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.68  E-value=0.00062  Score=69.82  Aligned_cols=44  Identities=23%  Similarity=0.196  Sum_probs=32.7

Q ss_pred             CCccccceEEe---eCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          465 VPILNHVCLTI---EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       465 ~~vL~nisltI---~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      .+++-|+ +..   ..+.-++|+|+|||||||+++.|+..+.+..+.|
T Consensus        20 ~~v~~d~-~~~~~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~   66 (392)
T 4ag6_A           20 GLVLVDI-WKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRV   66 (392)
T ss_dssp             CEEEECT-TCCBTTBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred             CeEEEec-ccCcCccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEE
Confidence            4555555 222   2677899999999999999999988776666554

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=96.66  E-value=0.00097  Score=69.53  Aligned_cols=24  Identities=46%  Similarity=0.480  Sum_probs=22.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhccc
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      -++||||+||+|||||++.|+|..
T Consensus       181 ~kvaivG~~gvGKSTLln~l~g~~  204 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAILNKE  204 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTST
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCc
Confidence            479999999999999999999975

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.65  E-value=0.0011  Score=62.82  Aligned_cols=28  Identities=32%  Similarity=0.389  Sum_probs=24.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471          480 VVAIVGLSGSGKSTFVNLLLRLYEPSDG  507 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g~y~p~sG  507 (510)
                      +++|||++|+|||||++.|+|-..+.+|
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~~~~~~~   58 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGRKVFHSG   58 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence            6899999999999999999997766655

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=96.63  E-value=0.0004  Score=74.03  Aligned_cols=34  Identities=29%  Similarity=0.434  Sum_probs=30.7

Q ss_pred             ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      .++++++++.+| .++|+|+||||||||++.|..+
T Consensus        50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l   83 (517)
T 4ad8_A           50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLL   83 (517)
T ss_dssp             TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred             ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence            568899999999 9999999999999999998554

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.57  E-value=0.75  Score=49.33  Aligned_cols=10  Identities=20%  Similarity=0.547  Sum_probs=4.8

Q ss_pred             cccceEEeeC
Q 010471          468 LNHVCLTIEA  477 (510)
Q Consensus       468 L~nisltI~~  477 (510)
                      ++|++++-+.
T Consensus       342 ~~~v~~~y~~  351 (578)
T 4a82_A          342 IDHVSFQYND  351 (578)
T ss_dssp             EEEEEECSCS
T ss_pred             EEEEEEEcCC
Confidence            4455554443

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.49  E-value=0.0013  Score=65.20  Aligned_cols=34  Identities=32%  Similarity=0.307  Sum_probs=29.6

Q ss_pred             CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471          466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      ..+++..+.+ .|+.++|+|+||+||||++..|.+
T Consensus       133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence            4677888888 789999999999999999987775

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.47  E-value=1.3  Score=47.67  Aligned_cols=14  Identities=7%  Similarity=0.169  Sum_probs=9.7

Q ss_pred             cEEEEeeeEECCCC
Q 010471          449 HVQFVNISFHYPSR  462 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~  462 (510)
                      .-.++||||+-+.+
T Consensus       356 ~~~l~~isl~i~~G  369 (587)
T 3qf4_A          356 DPVLSGVNFSVKPG  369 (587)
T ss_dssp             CCSEEEEEEEECTT
T ss_pred             CcceeceEEEEcCC
Confidence            34578999887643

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=96.44  E-value=0.0013  Score=69.65  Aligned_cols=40  Identities=25%  Similarity=0.373  Sum_probs=33.0

Q ss_pred             ccceEEeeCCCEEEEEcCCCCcHHHHHHHHhc--ccCCCCce
Q 010471          469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQ  508 (510)
Q Consensus       469 ~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g--~y~p~sG~  508 (510)
                      +.+++++.+|.-++|+|.|||||||+++.|..  +|.++.|+
T Consensus       158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~  199 (512)
T 2ius_A          158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPED  199 (512)
T ss_dssp             CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTT
T ss_pred             CEEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCce
Confidence            35788899999999999999999999998765  56555454

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=96.40  E-value=0.0013  Score=66.89  Aligned_cols=24  Identities=38%  Similarity=0.595  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcccC
Q 010471          480 VVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      +++|||++|+|||||++.|.|...
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~  204 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQ  204 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCc
Confidence            499999999999999999999765

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.38  E-value=0.0014  Score=64.35  Aligned_cols=26  Identities=19%  Similarity=0.332  Sum_probs=22.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      .|..+.|+|+|||||||+++.|+.-+
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999997543

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.26  E-value=0.0014  Score=66.24  Aligned_cols=32  Identities=22%  Similarity=0.261  Sum_probs=26.6

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS  505 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~  505 (510)
                      -+++|+.+.|.|++|||||||+.-++.-....
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~   88 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAA   88 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            58999999999999999999987776544433

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.16  E-value=0.0013  Score=69.18  Aligned_cols=35  Identities=17%  Similarity=0.317  Sum_probs=31.1

Q ss_pred             CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      ..++++++++|+|  +.|+||+|+|||||++.+++-.
T Consensus        39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~   73 (476)
T 2ce7_A           39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA   73 (476)
T ss_dssp             HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence            4788889999988  8899999999999999998754

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.15  E-value=0.0013  Score=68.33  Aligned_cols=33  Identities=30%  Similarity=0.458  Sum_probs=29.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      ++.+++++|++||||||++.-|++.+.+..++|
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kV  128 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKV  128 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence            578999999999999999999999888776654

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.02  E-value=0.0023  Score=63.09  Aligned_cols=31  Identities=16%  Similarity=0.302  Sum_probs=27.3

Q ss_pred             EEeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       473 ltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      +.+++++.+.|.||+|+||||+++.+++...
T Consensus        44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~   74 (301)
T 3cf0_A           44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ   74 (301)
T ss_dssp             HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             cCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence            4568899999999999999999999998653

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.00  E-value=0.0032  Score=60.01  Aligned_cols=26  Identities=27%  Similarity=0.240  Sum_probs=22.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      ++-.+.|.|++||||||+++.|+.-|
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999997533

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=95.97  E-value=0.0026  Score=60.17  Aligned_cols=26  Identities=42%  Similarity=0.604  Sum_probs=21.8

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLL  499 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~  499 (510)
                      .+.+|+.+.++|++||||||++.+.+
T Consensus        72 ~i~~g~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           72 AISQNSVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             HHHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred             HHhcCCEEEEEeCCCCCcHHhHHHHH
Confidence            34579999999999999999877654

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.96  E-value=0.0035  Score=56.69  Aligned_cols=25  Identities=28%  Similarity=0.406  Sum_probs=21.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          478 NEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       478 Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      .-+++++|++|+|||||++-|.+-.
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3489999999999999999888754

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.93  E-value=0.0032  Score=61.53  Aligned_cols=22  Identities=41%  Similarity=0.616  Sum_probs=20.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhc
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      ..|+|+|++||||||+++.|..
T Consensus        76 ~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           76 YVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999974

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.92  E-value=0.0012  Score=69.02  Aligned_cols=42  Identities=10%  Similarity=0.207  Sum_probs=36.1

Q ss_pred             CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471          466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG  507 (510)
Q Consensus       466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG  507 (510)
                      +.|++++.-+++|+.+.|.|++|+|||||+.-+++-..+..|
T Consensus       191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g  232 (454)
T 2r6a_A          191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN  232 (454)
T ss_dssp             HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS
T ss_pred             HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC
Confidence            468888878999999999999999999999988887665444

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.88  E-value=0.0042  Score=62.10  Aligned_cols=28  Identities=21%  Similarity=0.431  Sum_probs=24.3

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      +++..+.|+||+|||||||...|+.-+.
T Consensus        38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           38 RKEKLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence            3567899999999999999999987663

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.88  E-value=0.0053  Score=56.66  Aligned_cols=33  Identities=33%  Similarity=0.289  Sum_probs=26.4

Q ss_pred             ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471          467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      .++...+.+ .|..+.|+|+||||||||+.-|+.
T Consensus        24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~   56 (205)
T 2qmh_A           24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQ   56 (205)
T ss_dssp             CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHT
T ss_pred             eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
Confidence            566665554 688999999999999999976654

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=95.77  E-value=0.0031  Score=64.03  Aligned_cols=53  Identities=25%  Similarity=0.300  Sum_probs=42.8

Q ss_pred             cccEEEEeeeEECCCCCCCCccc-----------cceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          447 MGHVQFVNISFHYPSRPTVPILN-----------HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       447 ~~~I~f~nVsF~Y~~~~~~~vL~-----------nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      .+.+.|++++--||..  +.-++           |.=+.|-+||+.+|+|++|+|||||++-|.+-
T Consensus       135 ~~r~~fe~l~Pi~P~~--R~~le~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~  198 (427)
T 3l0o_A          135 NDRVNFDNLTPDYPRE--RFILETDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANG  198 (427)
T ss_dssp             -CCCCGGGSCEECCCS--BCCCCCSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred             ccccccccCCCCCchh--hccccccchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHH
Confidence            4567788888888753  44566           77789999999999999999999999887763

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.73  E-value=0.0034  Score=61.59  Aligned_cols=30  Identities=17%  Similarity=0.235  Sum_probs=25.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471          478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDG  507 (510)
Q Consensus       478 Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG  507 (510)
                      ...+.|+||+|+||||+++.+++...+.+|
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~   76 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAATLFDTEE   76 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHHHHSCGG
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHHHcCCCc
Confidence            357999999999999999999998766554

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=95.58  E-value=0.0071  Score=55.80  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=20.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhcc
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      =++++||++|+|||||++-+.+-
T Consensus        29 ~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           29 CKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            36999999999999999988764

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=95.50  E-value=0.0074  Score=56.32  Aligned_cols=27  Identities=11%  Similarity=0.180  Sum_probs=23.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      ++..+.|+||+|+||||+++.+++...
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999999876543

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.47  E-value=0.0075  Score=62.35  Aligned_cols=27  Identities=44%  Similarity=0.578  Sum_probs=23.4

Q ss_pred             eeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          475 IEANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      =++.+.+.|+|+|||||||+++.|+.-
T Consensus       255 ~~~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          255 SPNPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             CSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            356789999999999999999998753

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=95.46  E-value=0.0079  Score=59.89  Aligned_cols=28  Identities=29%  Similarity=0.354  Sum_probs=25.3

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      -+++|+.+.|.|++|||||||+.-++.-
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~  130 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVN  130 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence            5899999999999999999999877654

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.44  E-value=0.0069  Score=60.90  Aligned_cols=28  Identities=21%  Similarity=0.248  Sum_probs=25.5

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      -+++|+.+.|.|++|||||||+.-++.-
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999999887764

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=95.43  E-value=0.0041  Score=64.90  Aligned_cols=36  Identities=14%  Similarity=0.311  Sum_probs=29.9

Q ss_pred             ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      +++.+ ..+-+|++++|+|+||+|||||++.|.+-..
T Consensus       141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~  176 (473)
T 1sky_E          141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIA  176 (473)
T ss_dssp             HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred             HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence            45555 6778999999999999999999998876443

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=95.37  E-value=0.0044  Score=57.46  Aligned_cols=25  Identities=36%  Similarity=0.441  Sum_probs=22.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          478 NEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       478 Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      .-+|+++|++|+|||||++-|.+-.
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            4589999999999999999998764

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=95.37  E-value=0.0089  Score=53.31  Aligned_cols=27  Identities=22%  Similarity=0.356  Sum_probs=22.8

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      ..+..+.|+|++|+||||+++.+++.+
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            345779999999999999999887654

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.33  E-value=0.0083  Score=56.10  Aligned_cols=23  Identities=30%  Similarity=0.615  Sum_probs=20.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhcc
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      -+|++||++|+|||||++-|.+-
T Consensus        30 ~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           30 KTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47999999999999999988764

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.26  E-value=0.0092  Score=58.18  Aligned_cols=27  Identities=15%  Similarity=0.272  Sum_probs=24.1

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      .++..+.|.||+|+||||+++.+++.+
T Consensus        52 ~~~~~vll~Gp~GtGKT~la~~la~~~   78 (297)
T 3b9p_A           52 APAKGLLLFGPPGNGKTLLARAVATEC   78 (297)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            467899999999999999999998755

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=95.22  E-value=0.0086  Score=55.50  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=20.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhcc
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      .+++|+|++|+|||||++-|++-
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            47999999999999999877754

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.16  E-value=0.01  Score=53.91  Aligned_cols=23  Identities=39%  Similarity=0.481  Sum_probs=20.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhcc
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      =+++++|++|+|||||++-+.+-
T Consensus        29 ~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           29 VKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            47999999999999999888653

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.15  E-value=0.0048  Score=62.04  Aligned_cols=29  Identities=31%  Similarity=0.534  Sum_probs=25.4

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP  504 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p  504 (510)
                      ++++.+.|.|++|+|||||++.+++..++
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~   71 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK   71 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            46789999999999999999999886644

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.14  E-value=0.01  Score=54.27  Aligned_cols=27  Identities=15%  Similarity=0.194  Sum_probs=23.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRLYEPS  505 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~y~p~  505 (510)
                      +.+.|.|++|+|||||++.+++.....
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~   81 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKR   81 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            789999999999999999998766433

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=95.10  E-value=0.01  Score=54.83  Aligned_cols=21  Identities=29%  Similarity=0.547  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 010471          480 VVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      ++++||++|+|||||++-+.+
T Consensus        36 ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            799999999999999998875

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=95.09  E-value=0.011  Score=59.73  Aligned_cols=25  Identities=32%  Similarity=0.347  Sum_probs=22.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          478 NEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       478 Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      .-++++||++|+|||||++.|.|-.
T Consensus       167 ~~~v~lvG~~gvGKSTLin~L~~~~  191 (357)
T 2e87_A          167 IPTVVIAGHPNVGKSTLLKALTTAK  191 (357)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3589999999999999999999865

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=95.09  E-value=0.011  Score=53.93  Aligned_cols=24  Identities=25%  Similarity=0.380  Sum_probs=20.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhc
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      +.=+++++|++|+|||||++-+.+
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~   50 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCK   50 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHh
Confidence            345799999999999999988864

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=95.06  E-value=0.0073  Score=56.68  Aligned_cols=29  Identities=28%  Similarity=0.500  Sum_probs=24.6

Q ss_pred             eeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          475 IEANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      .++.+++.|+||.||||+|.++.|+.-|.
T Consensus        26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g   54 (217)
T 3umf_A           26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFH   54 (217)
T ss_dssp             TTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            35678899999999999999999986553

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=95.05  E-value=0.011  Score=56.94  Aligned_cols=22  Identities=41%  Similarity=0.561  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcc
Q 010471          480 VVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      ++++||++|+|||||++.|+|-
T Consensus        38 ~I~lvG~~g~GKSSLin~l~~~   59 (262)
T 3def_A           38 TVLVLGKGGVGKSSTVNSLIGE   59 (262)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999874

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=95.02  E-value=0.012  Score=56.84  Aligned_cols=29  Identities=41%  Similarity=0.483  Sum_probs=22.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDG  507 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~y~p~sG  507 (510)
                      .++++||.+|+|||||++.|.|-.....|
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~  128 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVG  128 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccC
Confidence            58999999999999999999986654433

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.01  E-value=0.011  Score=59.62  Aligned_cols=29  Identities=24%  Similarity=0.501  Sum_probs=25.4

Q ss_pred             CCC--EEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471          477 ANE--VVAIVGLSGSGKSTFVNLLLRLYEPS  505 (510)
Q Consensus       477 ~Ge--~vAIVG~SGSGKSTL~kLL~g~y~p~  505 (510)
                      +|.  .+.|+||+|+||||+++.+++...+.
T Consensus        41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~   71 (389)
T 1fnn_A           41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDK   71 (389)
T ss_dssp             TSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence            446  89999999999999999999887665

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=95.00  E-value=0.011  Score=57.09  Aligned_cols=22  Identities=32%  Similarity=0.536  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcc
Q 010471          480 VVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      ++++||++|+|||||++.|++-
T Consensus        41 ~I~vvG~~g~GKSSLin~l~~~   62 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSIIGE   62 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999999864

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=94.97  E-value=0.013  Score=54.57  Aligned_cols=22  Identities=36%  Similarity=0.634  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcc
Q 010471          480 VVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      +|+|||++|+|||||++-+.+-
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            7999999999999999998864

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=94.91  E-value=0.011  Score=52.60  Aligned_cols=27  Identities=22%  Similarity=0.267  Sum_probs=23.0

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +.+..+.|+|++|+||||+++.+++..
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            346678999999999999999888765

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=94.90  E-value=0.012  Score=53.39  Aligned_cols=32  Identities=22%  Similarity=0.365  Sum_probs=24.3

Q ss_pred             ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471          467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      +++.+.  -++.=+++++|++|+|||||++-+.+
T Consensus        20 ~~~~~~--~~~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           20 LFSRIF--GKKQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             GGGGTT--TTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             HHHHhc--cCCccEEEEECCCCCCHHHHHHHHHh
Confidence            555442  23455899999999999999998864

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=94.89  E-value=0.017  Score=50.09  Aligned_cols=29  Identities=24%  Similarity=0.299  Sum_probs=24.3

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP  504 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p  504 (510)
                      +.+.-+-|.|++|+|||++++.+......
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~   50 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQFGRN   50 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence            45667999999999999999999876543

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=94.89  E-value=0.012  Score=54.73  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=19.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhcc
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      -+++|||.+|+|||||++-+++-
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            47999999999999999776653

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=94.88  E-value=0.0043  Score=59.61  Aligned_cols=33  Identities=21%  Similarity=0.309  Sum_probs=25.8

Q ss_pred             ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      .+++++...++|  +.|.||+|+||||+++.+++.
T Consensus        35 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           35 RYANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             HHHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred             HHHHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence            344555555666  889999999999999999874

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=94.86  E-value=0.014  Score=56.48  Aligned_cols=28  Identities=21%  Similarity=0.343  Sum_probs=24.5

Q ss_pred             eeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          475 IEANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      ++++.-+.|.||+|+||||+++.+++-.
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            4577789999999999999999998754

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=94.73  E-value=0.012  Score=62.33  Aligned_cols=28  Identities=7%  Similarity=0.031  Sum_probs=24.2

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      +.|-.+.++|.|||||||+.++|+.-+.
T Consensus       393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~  420 (511)
T 1g8f_A          393 KQGFSIVLGNSLTVSREQLSIALLSTFL  420 (511)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence            4677899999999999999999987554

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=94.63  E-value=0.0099  Score=58.87  Aligned_cols=28  Identities=18%  Similarity=0.197  Sum_probs=23.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLYEP  504 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p  504 (510)
                      ++..+.|.||+|+|||||++.+++....
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~   63 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK   63 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence            4568999999999999999999876543

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=94.63  E-value=0.015  Score=53.26  Aligned_cols=23  Identities=17%  Similarity=0.185  Sum_probs=19.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHhc
Q 010471          478 NEVVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       478 Ge~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      .=+++++|++|+|||||++-+.+
T Consensus        30 ~~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           30 AIKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHHh
Confidence            34799999999999999977653

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=94.62  E-value=0.018  Score=54.74  Aligned_cols=26  Identities=15%  Similarity=0.247  Sum_probs=22.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +..-+.|.||+|+||||+++.+++-+
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh
Confidence            44568899999999999999998744

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=94.59  E-value=0.016  Score=52.97  Aligned_cols=21  Identities=24%  Similarity=0.351  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 010471          480 VVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      ++++||++|+|||||++-+.+
T Consensus        31 ki~vvG~~~vGKSsli~~l~~   51 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKT   51 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhh
Confidence            689999999999999988764

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=94.57  E-value=0.018  Score=57.15  Aligned_cols=27  Identities=26%  Similarity=0.422  Sum_probs=24.2

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      -+++|+.+.|.|++|||||||+.-++.
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~  120 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCV  120 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999999976654

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=94.55  E-value=0.023  Score=53.38  Aligned_cols=22  Identities=32%  Similarity=0.579  Sum_probs=20.8

Q ss_pred             eeCCCEEEEEcCCCCcHHHHHH
Q 010471          475 IEANEVVAIVGLSGSGKSTFVN  496 (510)
Q Consensus       475 I~~Ge~vAIVG~SGSGKSTL~k  496 (510)
                      +++|+.+-|.|++|+||||++.
T Consensus        27 l~~G~l~~i~G~pG~GKT~l~l   48 (251)
T 2zts_A           27 FPEGTTVLLTGGTGTGKTTFAA   48 (251)
T ss_dssp             EETTCEEEEECCTTSSHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHH
Confidence            7999999999999999999984

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=94.26  E-value=0.019  Score=61.83  Aligned_cols=25  Identities=20%  Similarity=0.240  Sum_probs=22.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      +|..+.|.|.|||||||+++.|...
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~  419 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVT  419 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHH
Confidence            5678999999999999999999764

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=94.26  E-value=0.025  Score=52.23  Aligned_cols=37  Identities=19%  Similarity=0.328  Sum_probs=27.6

Q ss_pred             ccccceEEeeCCC---EEEEEcCCCCcHHHHHHHHhcccC
Q 010471          467 ILNHVCLTIEANE---VVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       467 vL~nisltI~~Ge---~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      +++.+.-.+..|+   .+.|.|++|+||||+++.+++-+.
T Consensus        31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4444444445555   799999999999999999876553

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=94.23  E-value=0.015  Score=57.65  Aligned_cols=34  Identities=18%  Similarity=0.203  Sum_probs=29.2

Q ss_pred             CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471          466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL  499 (510)
Q Consensus       466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~  499 (510)
                      +-|+++.--+++|+.+.|.|++|+||||++.-++
T Consensus        56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia   89 (315)
T 3bh0_A           56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQA   89 (315)
T ss_dssp             HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHH
T ss_pred             HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence            4577777668999999999999999999987665

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=94.21  E-value=0.021  Score=57.90  Aligned_cols=25  Identities=36%  Similarity=0.531  Sum_probs=23.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      ++..+++||++|+|||||+|.|.|-
T Consensus       161 ~~~~i~~vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          161 EGGDVYVVGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCcEEEEcCCCCchHHHHHHHHhh
Confidence            5789999999999999999999986

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=94.20  E-value=7  Score=41.69  Aligned_cols=9  Identities=33%  Similarity=0.674  Sum_probs=4.7

Q ss_pred             EEeeeEECC
Q 010471          452 FVNISFHYP  460 (510)
Q Consensus       452 f~nVsF~Y~  460 (510)
                      ++||||+-+
T Consensus       359 l~~v~~~i~  367 (582)
T 3b60_A          359 LRNINLKIP  367 (582)
T ss_dssp             EEEEEEEEC
T ss_pred             ccceeEEEc
Confidence            555555543

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=94.04  E-value=0.023  Score=61.50  Aligned_cols=26  Identities=35%  Similarity=0.399  Sum_probs=22.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +|..+.|+|.|||||||+++.|...+
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L   76 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYL   76 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999997643

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=93.96  E-value=0.031  Score=54.54  Aligned_cols=26  Identities=31%  Similarity=0.395  Sum_probs=22.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          478 NEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       478 Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      +-++++||.+|+|||||++.|.|-..
T Consensus       120 ~~~v~~vG~~nvGKSsliN~l~~~~~  145 (282)
T 1puj_A          120 AIRALIIGIPNVGKSTLINRLAKKNI  145 (282)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             CceEEEEecCCCchHHHHHHHhcCce
Confidence            34799999999999999999988653

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=93.93  E-value=0.022  Score=57.73  Aligned_cols=25  Identities=36%  Similarity=0.595  Sum_probs=23.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      +|..+++||.+|+|||||+|.|.|-
T Consensus       159 ~~~~i~~vG~~nvGKStliN~L~~~  183 (368)
T 3h2y_A          159 GGKDVYVVGCTNVGKSTFINRMIKE  183 (368)
T ss_dssp             TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred             ccceEEEecCCCCChhHHHHHHHhh
Confidence            6789999999999999999999885

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=93.91  E-value=0.025  Score=57.01  Aligned_cols=26  Identities=31%  Similarity=0.576  Sum_probs=22.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      ++..+.|+||+|+||||+++.|++..
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            44568899999999999999998754

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=93.89  E-value=0.026  Score=57.13  Aligned_cols=29  Identities=24%  Similarity=0.315  Sum_probs=24.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPS  505 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~  505 (510)
                      +-.++.|+|.+||||||++|-+--+|.|.
T Consensus        32 ~~~killlG~~~SGKST~~kq~~i~~~~~   60 (362)
T 1zcb_A           32 RLVKILLLGAGESGKSTFLKQMRIIHGQD   60 (362)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHSCC
T ss_pred             CccEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            34789999999999999999987677763

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=93.88  E-value=0.036  Score=55.94  Aligned_cols=34  Identities=26%  Similarity=0.364  Sum_probs=27.6

Q ss_pred             CccccceEE---eeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471          466 PILNHVCLT---IEANEVVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       466 ~vL~nislt---I~~Ge~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      +-|+.+ +.   +++|+.+.|.|++|||||||+.-++.
T Consensus        49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~   85 (356)
T 1u94_A           49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIA   85 (356)
T ss_dssp             HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            346655 33   89999999999999999999976654

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=93.81  E-value=0.016  Score=60.14  Aligned_cols=24  Identities=42%  Similarity=0.652  Sum_probs=21.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhccc
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      ..+++||++|+||||++.-|++.+
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~~l  123 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLARYI  123 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            689999999999999999888765

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=93.77  E-value=0.0088  Score=54.50  Aligned_cols=21  Identities=29%  Similarity=0.411  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 010471          480 VVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      +|+++|++|+|||||++-|.+
T Consensus        35 ki~vvG~~~~GKSsli~~l~~   55 (199)
T 3l0i_B           35 KLLLIGDSGVGKSCLLLRFAD   55 (199)
T ss_dssp             EEEEECCTTSCCTTTTTSSBC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            699999999999999988775

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=93.70  E-value=0.033  Score=54.37  Aligned_cols=26  Identities=23%  Similarity=0.326  Sum_probs=22.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      ++..+.|.||+|+||||+++.+++.+
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            45678999999999999998877654

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=92.69  E-value=0.013  Score=53.61  Aligned_cols=23  Identities=17%  Similarity=0.185  Sum_probs=19.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHhc
Q 010471          478 NEVVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       478 Ge~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      .=+++++|++|+|||||++-+.+
T Consensus        30 ~~ki~v~G~~~~GKSsli~~l~~   52 (204)
T 3th5_A           30 AIKCVVVGDGAVGKTCLLISYTT   52 (204)
Confidence            34799999999999999977653

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=93.54  E-value=0.017  Score=57.55  Aligned_cols=37  Identities=16%  Similarity=0.230  Sum_probs=29.5

Q ss_pred             CccccceEEeeCC--CEEEEEcCCCCcHHHHHHHHhccc
Q 010471          466 PILNHVCLTIEAN--EVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       466 ~vL~nisltI~~G--e~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      .+++.+.-.+..|  ..+.|.||+|+||||+++.+++.+
T Consensus        44 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l   82 (353)
T 1sxj_D           44 HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL   82 (353)
T ss_dssp             TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            3666666666666  449999999999999999998764

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=93.52  E-value=0.038  Score=54.86  Aligned_cols=27  Identities=19%  Similarity=0.230  Sum_probs=23.7

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      ++..-+.|.||+|+||||+++.+++..
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHHc
Confidence            466789999999999999999998754

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=93.49  E-value=0.026  Score=48.85  Aligned_cols=27  Identities=19%  Similarity=0.140  Sum_probs=22.8

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +.+.-+-|.|++|+|||++++.+....
T Consensus        25 ~~~~~vll~G~~GtGKt~lA~~i~~~~   51 (143)
T 3co5_A           25 KRTSPVFLTGEAGSPFETVARYFHKNG   51 (143)
T ss_dssp             TCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred             CCCCcEEEECCCCccHHHHHHHHHHhC
Confidence            455679999999999999999998643

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=93.45  E-value=0.038  Score=54.80  Aligned_cols=28  Identities=29%  Similarity=0.291  Sum_probs=24.8

Q ss_pred             EEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471          473 LTIEANEVVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       473 ltI~~Ge~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      --+++|..+.|.||+|||||||+.-++.
T Consensus       118 GGi~~gsviLI~GpPGsGKTtLAlqlA~  145 (331)
T 2vhj_A          118 GHRYASGMVIVTGKGNSGKTPLVHALGE  145 (331)
T ss_dssp             TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            3688999999999999999999987763

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=93.39  E-value=9.6  Score=40.59  Aligned_cols=10  Identities=30%  Similarity=0.700  Sum_probs=5.5

Q ss_pred             EEEeeeEECC
Q 010471          451 QFVNISFHYP  460 (510)
Q Consensus       451 ~f~nVsF~Y~  460 (510)
                      .++||||+-+
T Consensus       358 ~l~~i~l~i~  367 (582)
T 3b5x_A          358 ALSHVSFSIP  367 (582)
T ss_pred             ccccceEEEC
Confidence            3556666554

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=93.38  E-value=0.04  Score=50.23  Aligned_cols=22  Identities=27%  Similarity=0.315  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcc
Q 010471          480 VVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      .+.|.|++|+||||+++.+.+-
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999988764

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=93.29  E-value=0.033  Score=56.05  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcc
Q 010471          480 VVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      .+++||++|+|||||++-|.|-
T Consensus        33 ~I~vvG~~~~GKSSLln~L~g~   54 (353)
T 2x2e_A           33 QIAVVGGQSAGKSSVLENFVGR   54 (353)
T ss_dssp             EEEEECBTTSSHHHHHHTTTTS
T ss_pred             eEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999985

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=93.24  E-value=0.023  Score=59.25  Aligned_cols=36  Identities=25%  Similarity=0.437  Sum_probs=29.4

Q ss_pred             ccceEEeeCCCE--EEEEcCCCCcHHHHHHHHhcccCC
Q 010471          469 NHVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLYEP  504 (510)
Q Consensus       469 ~nisltI~~Ge~--vAIVG~SGSGKSTL~kLL~g~y~p  504 (510)
                      +.+.-.|..|+.  +.|.||+|+||||+++.|.+....
T Consensus        39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~   76 (447)
T 3pvs_A           39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA   76 (447)
T ss_dssp             SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC
Confidence            555566667775  899999999999999999987654

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=93.20  E-value=0.036  Score=55.61  Aligned_cols=27  Identities=33%  Similarity=0.566  Sum_probs=23.6

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      ..+..+.|.||+|+||||+++.+++-.
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            567789999999999999999988654

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=93.19  E-value=0.057  Score=53.31  Aligned_cols=33  Identities=30%  Similarity=0.307  Sum_probs=26.0

Q ss_pred             CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471          466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL  499 (510)
Q Consensus       466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~  499 (510)
                      ..++..-+.+ .|.-+.|.|+||+||||++.-|.
T Consensus       136 ~~~H~~~v~~-~g~gvli~G~sG~GKStlal~l~  168 (312)
T 1knx_A          136 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI  168 (312)
T ss_dssp             EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             ceeEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence            4677754444 68899999999999999996654

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=93.16  E-value=0.04  Score=58.94  Aligned_cols=25  Identities=32%  Similarity=0.450  Sum_probs=22.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      .|..+.++|.+||||||+++.|...
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~~  395 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILATM  395 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEccCCCCCCHHHHHHHHHHH
Confidence            5678999999999999999999864

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=93.15  E-value=11  Score=40.41  Aligned_cols=10  Identities=30%  Similarity=0.607  Sum_probs=7.2

Q ss_pred             EEEeeeEECC
Q 010471          451 QFVNISFHYP  460 (510)
Q Consensus       451 ~f~nVsF~Y~  460 (510)
                      .++||||+-+
T Consensus       370 ~l~~isl~i~  379 (598)
T 3qf4_B          370 VLKDITFHIK  379 (598)
T ss_dssp             SCCSEEEECC
T ss_pred             cccceEEEEc
Confidence            4678888765

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=93.14  E-value=0.038  Score=53.12  Aligned_cols=26  Identities=19%  Similarity=0.178  Sum_probs=22.5

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      ++...+-|.||+|+||||+++.++..
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            45567999999999999999998764

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=93.08  E-value=0.024  Score=63.28  Aligned_cols=32  Identities=28%  Similarity=0.443  Sum_probs=26.1

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS  505 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~  505 (510)
                      .+..|+.+.++||+||||||++.++++...+.
T Consensus       105 ~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~  136 (773)
T 2xau_A          105 LYQNNQIMVFVGETGSGKTTQIPQFVLFDEMP  136 (773)
T ss_dssp             HHHHCSEEEEECCTTSSHHHHHHHHHHHHHCG
T ss_pred             HHhCCCeEEEECCCCCCHHHHHHHHHHHhccc
Confidence            35689999999999999999888886654443

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=93.08  E-value=0.04  Score=57.11  Aligned_cols=28  Identities=36%  Similarity=0.630  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLYEP  504 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p  504 (510)
                      ++.+++++|++|+||||++.-|+..+.-
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~  126 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQK  126 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence            4679999999999999999888876643

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=93.08  E-value=0.032  Score=58.39  Aligned_cols=25  Identities=36%  Similarity=0.407  Sum_probs=22.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      .|=+|+|||++|+|||||++.|++-
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~  247 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQS  247 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            4567999999999999999999874

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=92.94  E-value=0.049  Score=52.96  Aligned_cols=25  Identities=24%  Similarity=0.464  Sum_probs=21.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          478 NEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       478 Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +.-+-|+||+|+||||+++.+++..
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l   74 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLA   74 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh
Confidence            4568899999999999999998765

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=92.89  E-value=0.051  Score=56.35  Aligned_cols=22  Identities=32%  Similarity=0.511  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcc
Q 010471          480 VVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      ++++||++|+|||||++-|+|-
T Consensus       177 ki~lvG~~nvGKSSLin~l~~~  198 (436)
T 2hjg_A          177 QFCLIGRPNVGKSSLVNAMLGE  198 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Confidence            8999999999999999999874

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=92.87  E-value=0.049  Score=57.07  Aligned_cols=25  Identities=28%  Similarity=0.497  Sum_probs=21.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      ...++.+||.+||||||+++.|++-
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~   62 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRY   62 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHH
Confidence            3458999999999999999999764

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=92.86  E-value=0.05  Score=56.54  Aligned_cols=36  Identities=17%  Similarity=0.184  Sum_probs=29.8

Q ss_pred             ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      -|+++.--+++|+.+.|.|++|+||||++.-++.-.
T Consensus       189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~  224 (444)
T 2q6t_A          189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA  224 (444)
T ss_dssp             HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            466666558999999999999999999997766544

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=92.84  E-value=0.056  Score=54.41  Aligned_cols=27  Identities=15%  Similarity=0.236  Sum_probs=23.6

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      ++...+.|.||+|+||||+++.+++..
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            466789999999999999999998754

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=92.81  E-value=0.053  Score=54.34  Aligned_cols=28  Identities=25%  Similarity=0.334  Sum_probs=24.4

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      .+|..+-|.||+|+||||+++.+++...
T Consensus        68 ~~~~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           68 IAGRAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4577899999999999999999987654

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=92.81  E-value=0.046  Score=56.80  Aligned_cols=25  Identities=20%  Similarity=0.226  Sum_probs=22.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          478 NEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       478 Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +..+.|.||+|+|||||++.+++..
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l  154 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999998765

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=92.79  E-value=0.058  Score=53.39  Aligned_cols=26  Identities=19%  Similarity=0.318  Sum_probs=22.6

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      .+..-+-|.||+|+|||++++.+++.
T Consensus        49 ~~~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           49 KPTSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            35667999999999999999999864

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=92.79  E-value=0.043  Score=58.33  Aligned_cols=26  Identities=31%  Similarity=0.506  Sum_probs=22.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      ....+.+||.+||||||+.+.|++.+
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L   59 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYL   59 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34689999999999999999997643

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=92.77  E-value=0.048  Score=50.49  Aligned_cols=29  Identities=17%  Similarity=0.295  Sum_probs=25.6

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      .+|+...+.|.||.|+||||++..|++++
T Consensus        54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l   82 (212)
T 1tue_A           54 GTPKKNCLVFCGPANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             TCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             cCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            37777789999999999999999998876

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=92.76  E-value=0.055  Score=54.27  Aligned_cols=33  Identities=24%  Similarity=0.416  Sum_probs=26.8

Q ss_pred             ccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       469 ~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      +.+.++++---.|+|||.+|+|||||++.|.+-
T Consensus       149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~  181 (342)
T 1lnz_A          149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA  181 (342)
T ss_dssp             EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred             hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence            445566666667999999999999999998864

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=92.69  E-value=0.058  Score=52.72  Aligned_cols=26  Identities=31%  Similarity=0.394  Sum_probs=21.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +-..+.|.||+|+|||+|++.+++-.
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            33567888999999999999998754

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=92.66  E-value=0.074  Score=50.79  Aligned_cols=28  Identities=29%  Similarity=0.377  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLYEP  504 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p  504 (510)
                      .+.-+-|.|++|+|||++++.+......
T Consensus        28 ~~~~vll~G~~GtGKt~la~~i~~~~~~   55 (265)
T 2bjv_A           28 LDKPVLIIGERGTGKELIASRLHYLSSR   55 (265)
T ss_dssp             SCSCEEEECCTTSCHHHHHHHHHHTSTT
T ss_pred             CCCCEEEECCCCCcHHHHHHHHHHhcCc
Confidence            3467889999999999999999877653

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=92.58  E-value=0.057  Score=54.34  Aligned_cols=25  Identities=36%  Similarity=0.420  Sum_probs=21.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          478 NEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       478 Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      .-+++|+|+.|+||||+++-|++.+
T Consensus        79 ~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           79 AHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHH
Confidence            4589999999999999998887554

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=92.50  E-value=0.052  Score=58.38  Aligned_cols=33  Identities=42%  Similarity=0.480  Sum_probs=26.0

Q ss_pred             ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +|++++   ++--+|+|||++|+|||||++.|.|--
T Consensus        30 ~L~~i~---~~~~~VaivG~pnvGKStLiN~L~g~~   62 (592)
T 1f5n_A           30 ILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK   62 (592)
T ss_dssp             HHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             HHHhcc---CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence            565542   334579999999999999999999854

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=92.49  E-value=0.06  Score=59.32  Aligned_cols=27  Identities=30%  Similarity=0.335  Sum_probs=23.3

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +++=+|+|||++|+|||||++.|+|--
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~   93 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGEN   93 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            355689999999999999999999853

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=92.43  E-value=0.055  Score=57.92  Aligned_cols=23  Identities=30%  Similarity=0.608  Sum_probs=21.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhcc
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      -+|+|||..|+|||||++-|+|-
T Consensus        66 ~~V~vvG~~n~GKSTLIN~Llg~   88 (550)
T 2qpt_A           66 PMVLVAGQYSTGKTSFIQYLLEQ   88 (550)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            47999999999999999999885

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=92.38  E-value=0.075  Score=55.37  Aligned_cols=32  Identities=16%  Similarity=0.270  Sum_probs=27.7

Q ss_pred             ceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       471 isltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      .=+.|-+|++++|+|++|+|||||+.-+.+-.
T Consensus       146 ~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~  177 (482)
T 2ck3_D          146 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNV  177 (482)
T ss_dssp             HHSCEETTCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             cccccccCCeeeeecCCCCChHHHHHHHHHhh
Confidence            34688999999999999999999998777654

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=92.37  E-value=0.063  Score=54.28  Aligned_cols=26  Identities=23%  Similarity=0.475  Sum_probs=22.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      ++..+.|+||+|+||||+++.+++..
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~~l   96 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAKHL   96 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHh
Confidence            34568899999999999999998765

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=92.32  E-value=0.054  Score=56.87  Aligned_cols=25  Identities=36%  Similarity=0.458  Sum_probs=20.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      .|=+|+|||++|+|||||++-|.+-
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~  256 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQ  256 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4556999999999999999999875

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=92.29  E-value=0.081  Score=53.56  Aligned_cols=26  Identities=23%  Similarity=0.388  Sum_probs=23.0

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLL  499 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~  499 (510)
                      =+++|+.+.|.|++|||||||+.-++
T Consensus        70 Gl~~G~li~I~G~pGsGKTtlal~la   95 (366)
T 1xp8_A           70 GIPRGRITEIYGPESGGKTTLALAIV   95 (366)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CccCCcEEEEEcCCCCChHHHHHHHH
Confidence            47999999999999999999996554

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=92.29  E-value=0.043  Score=54.92  Aligned_cols=35  Identities=14%  Similarity=0.165  Sum_probs=28.8

Q ss_pred             ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      -|+.+.--+++|+.+.|.|++|+||||++.-++.-
T Consensus        35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~   69 (338)
T 4a1f_A           35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLS   69 (338)
T ss_dssp             HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            45655556889999999999999999999776544

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=92.28  E-value=0.051  Score=53.76  Aligned_cols=24  Identities=25%  Similarity=0.368  Sum_probs=20.1

Q ss_pred             eeCCCEEEEEcCCCCcHHHHH-HHHh
Q 010471          475 IEANEVVAIVGLSGSGKSTFV-NLLL  499 (510)
Q Consensus       475 I~~Ge~vAIVG~SGSGKSTL~-kLL~  499 (510)
                      +|+| .|-|.||+|||||||+ +++.
T Consensus        26 l~~G-iteI~G~pGsGKTtL~Lq~~~   50 (333)
T 3io5_A           26 MQSG-LLILAGPSKSFKSNFGLTMVS   50 (333)
T ss_dssp             BCSE-EEEEEESSSSSHHHHHHHHHH
T ss_pred             CcCC-eEEEECCCCCCHHHHHHHHHH
Confidence            5789 8999999999999995 4443

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=92.19  E-value=0.079  Score=52.22  Aligned_cols=25  Identities=20%  Similarity=0.238  Sum_probs=22.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          478 NEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       478 Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      ++-+.|.||+|+|||+|++.++...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~  176 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHEL  176 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999999887643

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=92.12  E-value=0.074  Score=53.42  Aligned_cols=25  Identities=20%  Similarity=0.349  Sum_probs=22.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          478 NEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       478 Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +..+.|.||+|+||||+++.+++-.
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHH
Confidence            5689999999999999999988653

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=92.12  E-value=0.068  Score=53.79  Aligned_cols=27  Identities=19%  Similarity=0.279  Sum_probs=23.2

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +++.-+.|.||+|+||||+++.+++..
T Consensus        82 ~~~~~iLL~GppGtGKT~la~ala~~~  108 (355)
T 2qp9_X           82 KPTSGILLYGPPGTGKSYLAKAVATEA  108 (355)
T ss_dssp             CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence            456679999999999999999998754

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=92.03  E-value=0.071  Score=52.78  Aligned_cols=25  Identities=24%  Similarity=0.416  Sum_probs=21.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      ..+.|.||+|+||||+++.+++-..
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~~~   80 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYEMS   80 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999987543

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=91.97  E-value=0.065  Score=53.36  Aligned_cols=21  Identities=33%  Similarity=0.498  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 010471          480 VVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      +|+|||++|+|||||++-+.+
T Consensus       167 kI~ivG~~~vGKSsLl~~l~~  187 (329)
T 3o47_A          167 RILMVGLDAAGKTTILYKLKL  187 (329)
T ss_dssp             EEEEEESTTSSHHHHHHHTCS
T ss_pred             eEEEECCCCccHHHHHHHHhC
Confidence            799999999999999988764

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=91.92  E-value=0.086  Score=51.96  Aligned_cols=25  Identities=24%  Similarity=0.488  Sum_probs=21.7

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      ..|..+.|.|+.|+|||||++-+++
T Consensus        29 ~~~~~v~i~G~~G~GKT~Ll~~~~~   53 (350)
T 2qen_A           29 ENYPLTLLLGIRRVGKSSLLRAFLN   53 (350)
T ss_dssp             HHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred             hcCCeEEEECCCcCCHHHHHHHHHH
Confidence            3468999999999999999987764

>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*

Probab=91.83  E-value=0.06  Score=56.73  Aligned_cols=22  Identities=36%  Similarity=0.625  Sum_probs=19.5

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHH
Q 010471          476 EANEVVAIVGLSGSGKSTFVNL  497 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kL  497 (510)
                      +.|+++.+.|+||||||||...
T Consensus       223 ~~g~~~~ffGlSGtGKTtLs~~  244 (529)
T 1j3b_A          223 KEGDVAVFFGLSGTGKTTLSTD  244 (529)
T ss_dssp             TTCCEEEEEECTTSCHHHHTCB
T ss_pred             CCCcEEEEEccccCChhhHhhc
Confidence            6788999999999999998855

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=91.72  E-value=0.084  Score=56.18  Aligned_cols=23  Identities=22%  Similarity=0.342  Sum_probs=20.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhcc
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      =+|++||.+|+|||||++-+.+-
T Consensus        42 ~kV~lvG~~~vGKSSLl~~l~~~   64 (535)
T 3dpu_A           42 IKVHLIGDGMAGKTSLLKQLIGE   64 (535)
T ss_dssp             EEEEEESSSCSSHHHHHHHHHC-
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999988763

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=91.65  E-value=0.09  Score=54.51  Aligned_cols=25  Identities=24%  Similarity=0.476  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcccCC
Q 010471          480 VVAIVGLSGSGKSTFVNLLLRLYEP  504 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g~y~p  504 (510)
                      -+.++||+|+||||+++.|++....
T Consensus        52 ~iLl~GppGtGKT~lar~lA~~l~~   76 (444)
T 1g41_A           52 NILMIGPTGVGKTEIARRLAKLANA   76 (444)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            4779999999999999999987643

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=91.61  E-value=0.061  Score=52.79  Aligned_cols=25  Identities=24%  Similarity=0.400  Sum_probs=21.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      ++..+.|.||+|+||||+++.+...
T Consensus        37 ~~~~vll~G~~GtGKT~la~~i~~~   61 (324)
T 1hqc_A           37 PLEHLLLFGPPGLGKTTLAHVIAHE   61 (324)
T ss_dssp             CCCCCEEECCTTCCCHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHH
Confidence            4467899999999999999998763

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=91.46  E-value=0.069  Score=56.39  Aligned_cols=25  Identities=40%  Similarity=0.566  Sum_probs=20.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      +..+++|||+.|+||||++.-|+..
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~  124 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYY  124 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999888843

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.34  E-value=0.11  Score=53.78  Aligned_cols=29  Identities=24%  Similarity=0.362  Sum_probs=24.4

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      -+++-+-+-+.||.|||||++++.+++-.
T Consensus       202 g~~~prGiLL~GPPGtGKT~lakAiA~~~  230 (428)
T 4b4t_K          202 GIDPPRGVLLYGPPGTGKTMLVKAVANST  230 (428)
T ss_dssp             CCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            35666679999999999999999998743

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.18  E-value=0.11  Score=53.64  Aligned_cols=29  Identities=21%  Similarity=0.234  Sum_probs=25.2

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      -+++-+-+-+.||.|||||++++.+++-.
T Consensus       211 g~~~prGvLLyGPPGTGKTllAkAiA~e~  239 (434)
T 4b4t_M          211 GIRAPKGALMYGPPGTGKTLLARACAAQT  239 (434)
T ss_dssp             CCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence            46677889999999999999999998743

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=91.16  E-value=0.12  Score=52.65  Aligned_cols=27  Identities=15%  Similarity=0.255  Sum_probs=23.4

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      .++.-+.|.||+|+|||++++.+++..
T Consensus       146 ~~~~~vLL~GppGtGKT~la~aia~~~  172 (389)
T 3vfd_A          146 APARGLLLFGPPGNGKTMLAKAVAAES  172 (389)
T ss_dssp             CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            356889999999999999999997653

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.16  E-value=0.11  Score=53.67  Aligned_cols=29  Identities=21%  Similarity=0.321  Sum_probs=24.9

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      -+++-+-+-+.||.|||||+|++.+++-.
T Consensus       211 g~~~prGvLL~GPPGtGKTllAkAiA~e~  239 (437)
T 4b4t_L          211 GIKPPKGVLLYGPPGTGKTLLAKAVAATI  239 (437)
T ss_dssp             CCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            36677789999999999999999998743

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=91.13  E-value=0.098  Score=51.30  Aligned_cols=25  Identities=16%  Similarity=0.142  Sum_probs=20.9

Q ss_pred             eeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471          475 IEANEVVAIVGLSGSGKSTFVNLLL  499 (510)
Q Consensus       475 I~~Ge~vAIVG~SGSGKSTL~kLL~  499 (510)
                      .+..-+++++|++|+|||||++-+.
T Consensus       152 ~~~~~~i~i~G~~~~GKssli~~~~  176 (332)
T 2wkq_A          152 AKELIKCVVVGDGAVGKTCLLISYT  176 (332)
T ss_dssp             HTTCEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccceeEEEEECCCCCChHHHHHHHH
Confidence            3445689999999999999997765

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=91.05  E-value=0.12  Score=53.73  Aligned_cols=27  Identities=19%  Similarity=0.230  Sum_probs=24.0

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      ++..-+.|.||+|+|||||++.+++..
T Consensus       165 ~~~~~vLL~GppGtGKT~lA~aia~~~  191 (444)
T 2zan_A          165 TPWRGILLFGPPGTGKSYLAKAVATEA  191 (444)
T ss_dssp             CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            566889999999999999999998765

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=90.95  E-value=0.096  Score=54.77  Aligned_cols=32  Identities=16%  Similarity=0.277  Sum_probs=27.7

Q ss_pred             ceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       471 isltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      .=+.+-+|++++|+|++|+|||||+.-|.+-.
T Consensus       158 ~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~  189 (498)
T 1fx0_B          158 LLAPYRRGGKIGLFGGAGVGKTVLIMELINNI  189 (498)
T ss_dssp             HHSCCCTTCCEEEEECSSSSHHHHHHHHHHHT
T ss_pred             eecccccCCeEEeecCCCCCchHHHHHHHHHH
Confidence            34688999999999999999999998777654

>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C

Probab=90.94  E-value=0.11  Score=55.04  Aligned_cols=31  Identities=32%  Similarity=0.353  Sum_probs=27.9

Q ss_pred             ceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       471 isltI~~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      .=+.+-+|++.+|+|++|+|||+|+.-|++.
T Consensus       214 ~l~PigrGqr~~Ifg~~g~GKT~l~~~ia~~  244 (578)
T 3gqb_A          214 VLFPVAMGGTAAIPGPFGSGKSVTQQSLAKW  244 (578)
T ss_dssp             TTSCEETTCEEEECCCTTSCHHHHHHHHHHH
T ss_pred             hcccccCCCEEeeeCCCCccHHHHHHHHHhc
Confidence            3468999999999999999999999988875

>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*

Probab=90.91  E-value=0.1  Score=54.88  Aligned_cols=21  Identities=43%  Similarity=0.749  Sum_probs=18.6

Q ss_pred             eCCCEEEEEcCCCCcHHHHHH
Q 010471          476 EANEVVAIVGLSGSGKSTFVN  496 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~k  496 (510)
                      +.|+++.+.|+||+|||||..
T Consensus       239 ~~g~~~lffGlSGtGKTTLs~  259 (540)
T 2olr_A          239 EKGDVAVFFGLSGTGKTTLST  259 (540)
T ss_dssp             TTSCEEEEECSTTSSHHHHHC
T ss_pred             CCCCEEEEEccCCCCHHHHhc
Confidence            367899999999999999874

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A

Probab=90.83  E-value=0.084  Score=55.85  Aligned_cols=32  Identities=25%  Similarity=0.313  Sum_probs=28.2

Q ss_pred             cceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       470 nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      |.=+.|-+|++.+|+|++|+|||||++-|++.
T Consensus       219 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~  250 (588)
T 3mfy_A          219 DTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKW  250 (588)
T ss_dssp             HHHSCEETTCEEEECSCCSHHHHHHHHHHHHH
T ss_pred             hccCCcccCCeEEeecCCCCCHHHHHHHHHhc
Confidence            34467999999999999999999999988774

>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*

Probab=90.69  E-value=0.12  Score=54.96  Aligned_cols=31  Identities=16%  Similarity=0.321  Sum_probs=27.8

Q ss_pred             ceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       471 isltI~~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      .=+.+-+|++.+|+|++|+|||+|+.-|++.
T Consensus       225 ~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~  255 (600)
T 3vr4_A          225 TFFPVTKGGAAAVPGPFGAGKTVVQHQIAKW  255 (600)
T ss_dssp             HHSCCBTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ccCCccCCCEEeeecCCCccHHHHHHHHHhc
Confidence            4467999999999999999999999988875

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.58  E-value=0.12  Score=52.80  Aligned_cols=28  Identities=21%  Similarity=0.317  Sum_probs=23.4

Q ss_pred             eeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          475 IEANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +++-+-+-+.||.|||||+|++.+++-.
T Consensus       179 i~~prGvLL~GPPGTGKTllAkAiA~e~  206 (405)
T 4b4t_J          179 IAQPKGVILYGPPGTGKTLLARAVAHHT  206 (405)
T ss_dssp             CCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred             CCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence            4555569999999999999999998743

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*

Probab=90.53  E-value=0.073  Score=55.36  Aligned_cols=34  Identities=15%  Similarity=0.058  Sum_probs=30.0

Q ss_pred             ceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471          471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP  504 (510)
Q Consensus       471 isltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p  504 (510)
                      .=++|-+|++++|+|.+|.|||||++-|++-...
T Consensus       145 ~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~  178 (469)
T 2c61_A          145 GTNTLVRGQKLPIFSASGLPHNEIALQIARQASV  178 (469)
T ss_dssp             TTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred             eeeccccCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            3478899999999999999999999999987653

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=90.49  E-value=0.13  Score=54.39  Aligned_cols=26  Identities=23%  Similarity=0.312  Sum_probs=22.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +...+.|.||+|+||||+++.+++-.
T Consensus        76 ~~~~lLL~GppGtGKTtla~~la~~l  101 (516)
T 1sxj_A           76 VFRAAMLYGPPGIGKTTAAHLVAQEL  101 (516)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            34689999999999999999998754

>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1

Probab=90.47  E-value=0.12  Score=54.36  Aligned_cols=21  Identities=38%  Similarity=0.700  Sum_probs=19.1

Q ss_pred             eCCCEEEEEcCCCCcHHHHHH
Q 010471          476 EANEVVAIVGLSGSGKSTFVN  496 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~k  496 (510)
                      +.|+++.+.|+||+|||||..
T Consensus       211 ~~g~~~~ffGlSGtGKTTLs~  231 (524)
T 1ii2_A          211 KQGDVTVFFGLSGTGKTTLSA  231 (524)
T ss_dssp             TTCCEEEEECCTTSSHHHHHC
T ss_pred             CCCCEEEEEccCCcchhhhhh
Confidence            578999999999999999875

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=90.42  E-value=0.14  Score=53.89  Aligned_cols=28  Identities=14%  Similarity=0.283  Sum_probs=24.3

Q ss_pred             eeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          475 IEANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +++..-+-|.||+|+|||++++.+++..
T Consensus       235 ~~~~~~vLL~GppGtGKT~lAraia~~~  262 (489)
T 3hu3_A          235 VKPPRGILLYGPPGTGKTLIARAVANET  262 (489)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence            5667789999999999999999997654

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=90.40  E-value=0.11  Score=51.44  Aligned_cols=34  Identities=24%  Similarity=0.322  Sum_probs=26.3

Q ss_pred             ccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       469 ~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +.+...+..|.-+-|.||+|+||||+++.+++..
T Consensus        37 ~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~   70 (331)
T 2r44_A           37 NRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTM   70 (331)
T ss_dssp             HHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            3333344456789999999999999999998754

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=89.97  E-value=0.11  Score=53.73  Aligned_cols=26  Identities=38%  Similarity=0.553  Sum_probs=21.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +..+++++|++|+||||++--|+..+
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l  124 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFL  124 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45799999999999999997777444

>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A

Probab=89.94  E-value=0.14  Score=53.91  Aligned_cols=21  Identities=33%  Similarity=0.558  Sum_probs=18.2

Q ss_pred             eCC-CEEEEEcCCCCcHHHHHH
Q 010471          476 EAN-EVVAIVGLSGSGKSTFVN  496 (510)
Q Consensus       476 ~~G-e~vAIVG~SGSGKSTL~k  496 (510)
                      +.| +++.+.|.||+|||||..
T Consensus       232 ~~g~~~~~ffGlSGtGKTTLs~  253 (532)
T 1ytm_A          232 LEGKNTAIFFGLSGTGKTTLST  253 (532)
T ss_dssp             TTSCSEEEEECCTTSSHHHHHC
T ss_pred             CCCCeEEEEEecCCCCHHHHhh
Confidence            356 799999999999999884

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}

Probab=89.92  E-value=0.15  Score=53.42  Aligned_cols=33  Identities=15%  Similarity=0.293  Sum_probs=28.7

Q ss_pred             ceEEeeCCCEEEEEcCCCCcHHHH-HHHHhcccC
Q 010471          471 VCLTIEANEVVAIVGLSGSGKSTF-VNLLLRLYE  503 (510)
Q Consensus       471 isltI~~Ge~vAIVG~SGSGKSTL-~kLL~g~y~  503 (510)
                      .=+.|-+||+.+|+|++|+||||| +..|.+--+
T Consensus       168 ~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~  201 (515)
T 2r9v_A          168 SMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKG  201 (515)
T ss_dssp             HHSCEETTCBEEEEEETTSSHHHHHHHHHHTTTT
T ss_pred             cccccccCCEEEEEcCCCCCccHHHHHHHHHhhc
Confidence            447899999999999999999999 788888654

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=89.82  E-value=0.17  Score=52.58  Aligned_cols=29  Identities=21%  Similarity=0.305  Sum_probs=24.7

Q ss_pred             eeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          475 IEANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      ..++.-+-+.||+|+||||+++.+++...
T Consensus        60 ~~~~~~iLl~GppGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           60 KMAGRAVLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             CCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence            34667899999999999999999987653

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=89.74  E-value=0.16  Score=50.08  Aligned_cols=23  Identities=22%  Similarity=0.498  Sum_probs=20.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhcc
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      ..+.|.|+.|+|||||++-++.-
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~   53 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINE   53 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            59999999999999999877653

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.71  E-value=0.16  Score=52.75  Aligned_cols=28  Identities=18%  Similarity=0.316  Sum_probs=24.6

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      -+++-+-+-+.||.|||||+|++.+++-
T Consensus       239 Gi~pprGILLyGPPGTGKTlLAkAiA~e  266 (467)
T 4b4t_H          239 GIDPPKGILLYGPPGTGKTLCARAVANR  266 (467)
T ss_dssp             TCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred             CCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence            4667778999999999999999999874

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=89.69  E-value=0.17  Score=52.46  Aligned_cols=33  Identities=18%  Similarity=0.208  Sum_probs=26.3

Q ss_pred             ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471          467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL  499 (510)
Q Consensus       467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~  499 (510)
                      -|+.+.-=+++|+.+.|.|++|+||||++.-++
T Consensus       186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia  218 (444)
T 3bgw_A          186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQA  218 (444)
T ss_dssp             HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHH
T ss_pred             HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHH
Confidence            355554358999999999999999999985544

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=89.59  E-value=0.16  Score=52.80  Aligned_cols=23  Identities=30%  Similarity=0.533  Sum_probs=21.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhcc
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      -+|+|||+-.+|||||++.|+|.
T Consensus        68 ~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           68 VAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHhhh
Confidence            46999999999999999999975

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=89.39  E-value=0.18  Score=54.61  Aligned_cols=25  Identities=28%  Similarity=0.351  Sum_probs=21.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      +.=+++|||++|+|||||++-|++-
T Consensus       166 ~~lkV~ivG~~n~GKSTLin~Ll~~  190 (611)
T 3izq_1          166 PHLSFVVLGHVDAGKSTLMGRLLYD  190 (611)
T ss_dssp             CCCEEEEECCSSSCHHHHHHHHHSC
T ss_pred             CceEEEEEECCCCCHHHHHHHHHHh
Confidence            3448999999999999999988753

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=89.29  E-value=0.22  Score=49.72  Aligned_cols=37  Identities=19%  Similarity=0.328  Sum_probs=26.3

Q ss_pred             ccccceEEeeCCC---EEEEEcCCCCcHHHHHHHHhcccC
Q 010471          467 ILNHVCLTIEANE---VVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       467 vL~nisltI~~Ge---~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      +++.+.-.+..|+   .+.|.||+|+||||+++.+++-..
T Consensus        24 ~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~   63 (373)
T 1jr3_A           24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN   63 (373)
T ss_dssp             HHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3333333344454   488999999999999999987553

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=89.22  E-value=0.18  Score=52.66  Aligned_cols=27  Identities=19%  Similarity=0.322  Sum_probs=22.6

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +...-+-|+||+|+||||+++.|++..
T Consensus       199 ~~~~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             cCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            445567899999999999999988764

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.18  E-value=0.21  Score=51.41  Aligned_cols=28  Identities=21%  Similarity=0.366  Sum_probs=24.0

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      -+++-+-+-+.||.|||||+|++.+++-
T Consensus       212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          212 GIKPPKGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             TCCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCCCCCCCceECCCCchHHHHHHHHHHH
Confidence            3556677999999999999999999864

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=89.13  E-value=0.068  Score=56.17  Aligned_cols=24  Identities=42%  Similarity=0.479  Sum_probs=21.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          478 NEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       478 Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      |=+|+|||++|+|||||++.|.+-
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~  266 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNE  266 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCC
Confidence            446899999999999999999875

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=89.08  E-value=0.16  Score=51.44  Aligned_cols=25  Identities=20%  Similarity=0.405  Sum_probs=20.7

Q ss_pred             CCCEEEE--EcCCCCcHHHHHHHHhcc
Q 010471          477 ANEVVAI--VGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       477 ~Ge~vAI--VG~SGSGKSTL~kLL~g~  501 (510)
                      .+..+.|  +|+.|+|||||++.+..-
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~   75 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKR   75 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHH
Confidence            4557777  899999999999988754

>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*

Probab=89.05  E-value=0.18  Score=52.04  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=18.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHh
Q 010471          478 NEVVAIVGLSGSGKSTFVNLLL  499 (510)
Q Consensus       478 Ge~vAIVG~SGSGKSTL~kLL~  499 (510)
                      ..-+.|+|++||||||+++.+.
T Consensus        53 ~~h~~i~G~tGsGKs~~~~~li   74 (437)
T 1e9r_A           53 PRHLLVNGATGTGKSVLLRELA   74 (437)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHH
Confidence            4678999999999999986543

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=88.92  E-value=0.22  Score=52.50  Aligned_cols=36  Identities=22%  Similarity=0.239  Sum_probs=28.9

Q ss_pred             ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +.+.+-..+..|.-+-|+||+|+|||+|++.|....
T Consensus        30 ~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l   65 (500)
T 3nbx_X           30 AIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF   65 (500)
T ss_dssp             HHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred             HHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHH
Confidence            344444555677899999999999999999998765

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=88.79  E-value=0.2  Score=52.04  Aligned_cols=25  Identities=28%  Similarity=0.385  Sum_probs=21.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      ..-++++||.+|+|||||++-|.+-
T Consensus       194 ~~~ki~ivG~~~vGKSslin~l~~~  218 (456)
T 4dcu_A          194 EVIQFCLIGRPNVGKSSLVNAMLGE  218 (456)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             ccceeEEecCCCCCHHHHHHHHhCC
Confidence            4568999999999999999998854

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=88.75  E-value=0.1  Score=51.68  Aligned_cols=26  Identities=38%  Similarity=0.378  Sum_probs=22.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          478 NEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       478 Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      +.-+-|.||+|+||||+++.+....+
T Consensus        45 ~~~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           45 IGGVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CceEEEECCCCccHHHHHHHHHHhCc
Confidence            34599999999999999999987654

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=88.49  E-value=0.19  Score=51.00  Aligned_cols=23  Identities=35%  Similarity=0.443  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccc
Q 010471          480 VVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      .|||||..-+|||||++.|.|--
T Consensus        74 ~V~ivG~PNvGKSTL~n~Lt~~~   96 (376)
T 4a9a_A           74 SVGFVGFPSVGKSTLLSKLTGTE   96 (376)
T ss_dssp             EEEEECCCCHHHHHHHHHHHSBC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCC
Confidence            79999999999999999999853

>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B

Probab=88.45  E-value=0.19  Score=52.61  Aligned_cols=33  Identities=18%  Similarity=0.313  Sum_probs=28.5

Q ss_pred             ceEEeeCCCEEEEEcCCCCcHHHH-HHHHhcccC
Q 010471          471 VCLTIEANEVVAIVGLSGSGKSTF-VNLLLRLYE  503 (510)
Q Consensus       471 isltI~~Ge~vAIVG~SGSGKSTL-~kLL~g~y~  503 (510)
                      .=+.|-+||+.+|+|++|.||||| +..|.+--+
T Consensus       155 ~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~  188 (502)
T 2qe7_A          155 SMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKG  188 (502)
T ss_dssp             HSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGGS
T ss_pred             cccccccCCEEEEECCCCCCchHHHHHHHHHhhc
Confidence            446889999999999999999999 778887654

>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*

Probab=88.43  E-value=0.11  Score=53.72  Aligned_cols=34  Identities=18%  Similarity=0.102  Sum_probs=29.7

Q ss_pred             ceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471          471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP  504 (510)
Q Consensus       471 isltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p  504 (510)
                      .=++|-+||+.+|.|.+|.|||||+.-|++--+.
T Consensus       140 ~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a  173 (464)
T 3gqb_B          140 VMNTLVRGQKLPIFSGSGLPANEIAAQIARQATV  173 (464)
T ss_dssp             TTSCCBTTCBCCEEEETTSCHHHHHHHHHHHCBC
T ss_pred             cccccccCCEEEEecCCCCCchHHHHHHHHHHHh
Confidence            3468899999999999999999999988887654

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=88.35  E-value=0.22  Score=48.49  Aligned_cols=22  Identities=32%  Similarity=0.336  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcc
Q 010471          480 VVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      .+.|.||+|+||||+++.+++-
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~~   69 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALARE   69 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHH
Confidence            5999999999999999998765

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=88.30  E-value=0.29  Score=52.17  Aligned_cols=29  Identities=28%  Similarity=0.373  Sum_probs=23.9

Q ss_pred             cceEEeeCCCEEEEEcCCCCcHHHHHHHH
Q 010471          470 HVCLTIEANEVVAIVGLSGSGKSTFVNLL  498 (510)
Q Consensus       470 nisltI~~Ge~vAIVG~SGSGKSTL~kLL  498 (510)
                      .+.+.+.++--+.|.|.+|||||++++.|
T Consensus       206 pv~~DL~k~pHlLIaG~TGSGKS~~L~tl  234 (574)
T 2iut_A          206 PIITDLAKMPHLLVAGTTGSGKSVGVNAM  234 (574)
T ss_dssp             EEEEEGGGSCCEEEECCTTSSHHHHHHHH
T ss_pred             EEEEEhhhCCeeEEECCCCCCHHHHHHHH
Confidence            35566667788999999999999999864

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=88.27  E-value=0.075  Score=54.89  Aligned_cols=22  Identities=32%  Similarity=0.558  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcc
Q 010471          480 VVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      +++|||++|+|||||++.|.+-
T Consensus        36 kI~IvG~~~vGKSTLin~L~~~   57 (423)
T 3qq5_A           36 YIVVAGRRNVGKSSFMNALVGQ   57 (423)
T ss_dssp             EEEEECSCSTTTTTTTTSSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7999999999999999888764

>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*

Probab=88.24  E-value=0.14  Score=53.08  Aligned_cols=32  Identities=13%  Similarity=0.086  Sum_probs=28.7

Q ss_pred             EEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471          473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP  504 (510)
Q Consensus       473 ltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p  504 (510)
                      ++|-+||+++|.|.+|.|||||+.-|++--+.
T Consensus       146 ~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~  177 (465)
T 3vr4_D          146 NTLVRGQKLPVFSGSGLPHKELAAQIARQATV  177 (465)
T ss_dssp             SCCBTTCBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred             cccccCCEEEEeCCCCcChHHHHHHHHHHHHh
Confidence            78999999999999999999999988876543

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=88.20  E-value=0.23  Score=53.09  Aligned_cols=24  Identities=33%  Similarity=0.490  Sum_probs=20.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhc
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      .+..|+|+|+.|.|||||++-+..
T Consensus       146 ~~~~v~I~G~~GiGKTtLa~~~~~  169 (591)
T 1z6t_A          146 EPGWVTIHGMAGCGKSVLAAEAVR  169 (591)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Confidence            456899999999999999987753

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=88.16  E-value=0.19  Score=52.02  Aligned_cols=24  Identities=29%  Similarity=0.508  Sum_probs=21.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhccc
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      -+|+|+|+.++|||||++.|+|+.
T Consensus        68 ~vvsv~G~~~~gks~l~N~ll~~~   91 (457)
T 4ido_A           68 VAVSVAGAFRKGKSFLMDFMLRYM   91 (457)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCchhHHHHHHHHHh
Confidence            588999999999999999887653

>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...

Probab=88.13  E-value=0.17  Score=53.15  Aligned_cols=33  Identities=15%  Similarity=0.298  Sum_probs=27.6

Q ss_pred             ceEEeeCCCEEEEEcCCCCcHHHH-HHHHhcccC
Q 010471          471 VCLTIEANEVVAIVGLSGSGKSTF-VNLLLRLYE  503 (510)
Q Consensus       471 isltI~~Ge~vAIVG~SGSGKSTL-~kLL~g~y~  503 (510)
                      .=+.|-+||+.+|+|++|.||||| +..|.+--.
T Consensus       155 ~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~  188 (510)
T 2ck3_A          155 SLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKR  188 (510)
T ss_dssp             HHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred             cccccccCCEEEEecCCCCCchHHHHHHHHHHHh
Confidence            346888999999999999999999 677776543

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=87.98  E-value=0.19  Score=52.66  Aligned_cols=22  Identities=32%  Similarity=0.418  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcc
Q 010471          480 VVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      ++++||++|+|||||++-|++-
T Consensus        35 ki~iiG~~~~GKSTLi~~Ll~~   56 (483)
T 3p26_A           35 SFVVLGHVDAGKSTLMGRLLYD   56 (483)
T ss_dssp             EEEEESCGGGTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            7999999999999999888643

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=87.93  E-value=0.24  Score=48.09  Aligned_cols=22  Identities=27%  Similarity=0.315  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcc
Q 010471          480 VVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      .+.|.||+|+||||+++.+++-
T Consensus        40 ~~ll~G~~G~GKt~la~~l~~~   61 (319)
T 2chq_A           40 HLLFSGPPGTGKTATAIALARD   61 (319)
T ss_dssp             CEEEESSSSSSHHHHHHHHHHH
T ss_pred             eEEEECcCCcCHHHHHHHHHHH
Confidence            3899999999999999988765

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=87.75  E-value=0.25  Score=48.01  Aligned_cols=21  Identities=38%  Similarity=0.526  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcc
Q 010471          481 VAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       481 vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      +.|.||+|+||||+++.+++-
T Consensus        45 ~ll~G~~G~GKt~la~~l~~~   65 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCLAHE   65 (323)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHH
Confidence            899999999999999988764

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=87.61  E-value=0.28  Score=54.41  Aligned_cols=27  Identities=26%  Similarity=0.272  Sum_probs=23.3

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +.+.-+.|+|++|+||||+++.+++..
T Consensus       205 ~~~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          205 RRKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence            467788999999999999999988654

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=87.44  E-value=0.22  Score=52.40  Aligned_cols=33  Identities=30%  Similarity=0.286  Sum_probs=25.5

Q ss_pred             cccceEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471          468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       468 L~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      |+++.--+++|+.+.|.|++|+|||||+.-++.
T Consensus       232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~  264 (503)
T 1q57_A          232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL  264 (503)
T ss_dssp             HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred             hhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence            343332478999999999999999999855543

>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*

Probab=87.27  E-value=0.21  Score=52.29  Aligned_cols=33  Identities=15%  Similarity=0.271  Sum_probs=28.9

Q ss_pred             ceEEeeCCCEEEEEcCCCCcHHHH-HHHHhcccC
Q 010471          471 VCLTIEANEVVAIVGLSGSGKSTF-VNLLLRLYE  503 (510)
Q Consensus       471 isltI~~Ge~vAIVG~SGSGKSTL-~kLL~g~y~  503 (510)
                      .=+.|-+||+.+|+|++|.||||| +..|.+--+
T Consensus       156 ~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~  189 (507)
T 1fx0_A          156 AMIPVGRGQRELIIGDRQTGKTAVATDTILNQQG  189 (507)
T ss_dssp             TTSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCT
T ss_pred             cccccccCCEEEEecCCCCCccHHHHHHHHHhhc
Confidence            447899999999999999999999 788888654

>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A

Probab=87.24  E-value=0.21  Score=52.21  Aligned_cols=30  Identities=17%  Similarity=0.378  Sum_probs=26.5

Q ss_pred             eEEeeCCCEEEEEcCCCCcHHHH-HHHHhcc
Q 010471          472 CLTIEANEVVAIVGLSGSGKSTF-VNLLLRL  501 (510)
Q Consensus       472 sltI~~Ge~vAIVG~SGSGKSTL-~kLL~g~  501 (510)
                      =+.|-+||+.+|+|.+|+||||| +..|.+-
T Consensus       156 l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~  186 (513)
T 3oaa_A          156 MIPIGRGQRELIIGDRQTGKTALAIDAIINQ  186 (513)
T ss_dssp             HSCCBTTCBCEEEESSSSSHHHHHHHHHHTT
T ss_pred             ccccccCCEEEeecCCCCCcchHHHHHHHhh
Confidence            37889999999999999999999 6788764

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=87.22  E-value=0.32  Score=46.82  Aligned_cols=28  Identities=11%  Similarity=0.241  Sum_probs=23.8

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      ++-..+.|.||.|+|||++++.|++.+.
T Consensus       102 ~~~n~~~l~GppgtGKt~~a~ala~~~~  129 (267)
T 1u0j_A          102 GKRNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence            3445799999999999999999998654

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=86.53  E-value=0.33  Score=51.65  Aligned_cols=23  Identities=30%  Similarity=0.388  Sum_probs=20.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHhc
Q 010471          478 NEVVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       478 Ge~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      ..+++|+|..|.|||||++.+..
T Consensus       152 ~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          152 SFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHH
Confidence            47899999999999999998873

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=86.39  E-value=0.23  Score=60.28  Aligned_cols=35  Identities=23%  Similarity=0.256  Sum_probs=31.1

Q ss_pred             CCccccce--EEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471          465 VPILNHVC--LTIEANEVVAIVGLSGSGKSTFVNLLL  499 (510)
Q Consensus       465 ~~vL~nis--ltI~~Ge~vAIVG~SGSGKSTL~kLL~  499 (510)
                      .+.|+++.  .-+++|+.+.+.|++|||||||+..+.
T Consensus      1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A         1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp             CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred             cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence            45788887  579999999999999999999998765

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=86.31  E-value=0.35  Score=53.81  Aligned_cols=29  Identities=14%  Similarity=0.260  Sum_probs=24.2

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      -+++-+-+-+.||+|+|||||++.+++-.
T Consensus       234 g~~~p~GILL~GPPGTGKT~LAraiA~el  262 (806)
T 3cf2_A          234 GVKPPRGILLYGPPGTGKTLIARAVANET  262 (806)
T ss_dssp             CCCCCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred             CCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            34555679999999999999999998754

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=86.12  E-value=0.34  Score=53.73  Aligned_cols=27  Identities=19%  Similarity=0.322  Sum_probs=23.2

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +.+.-+-|+||+|+||||+++.|+...
T Consensus       199 ~~~~~vLL~G~pGtGKT~la~~la~~l  225 (758)
T 3pxi_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQQI  225 (758)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            455678999999999999999998764

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=85.90  E-value=0.29  Score=58.65  Aligned_cols=29  Identities=24%  Similarity=0.374  Sum_probs=25.7

Q ss_pred             eeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          475 IEANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      +++|+.|.|.|++|+|||||+.-++.-..
T Consensus       729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa  757 (1706)
T 3cmw_A          729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ  757 (1706)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence            89999999999999999999988765443

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=85.87  E-value=0.33  Score=48.05  Aligned_cols=26  Identities=23%  Similarity=0.213  Sum_probs=22.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +|..+-|.||.|+|||++++.+++-.
T Consensus        44 ~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           44 QNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             CCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            56778899999999999999887654

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=85.70  E-value=0.38  Score=51.83  Aligned_cols=21  Identities=29%  Similarity=0.438  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 010471          480 VVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      .++|||+.++|||||++-|++
T Consensus       179 ~I~iiG~~d~GKSTLi~~Ll~  199 (592)
T 3mca_A          179 HLVVTGHVDSGKSTMLGRIMF  199 (592)
T ss_dssp             EEEEECCSSSTHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999988853

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=85.28  E-value=0.35  Score=60.59  Aligned_cols=26  Identities=19%  Similarity=0.413  Sum_probs=22.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      ...-|-||||+||||||+.+.|++-+
T Consensus       922 ~r~gvmlvGptgsGKTt~~~~La~al  947 (2695)
T 4akg_A          922 TQQALILVGKAGCGKTATWKTVIDAM  947 (2695)
T ss_dssp             HCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hcceEEEECCCCCCHHHHHHHHHHHH
Confidence            34669999999999999999998643

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=85.27  E-value=0.35  Score=52.12  Aligned_cols=24  Identities=25%  Similarity=0.481  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcccC
Q 010471          480 VVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      -+-|+||+|+|||+|++.+++..+
T Consensus       329 ~vLL~GppGtGKT~LAr~la~~~~  352 (595)
T 3f9v_A          329 HILIIGDPGTAKSQMLQFISRVAP  352 (595)
T ss_dssp             CEEEEESSCCTHHHHHHSSSTTCS
T ss_pred             ceEEECCCchHHHHHHHHHHHhCC
Confidence            799999999999999999998764

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=85.01  E-value=0.56  Score=51.89  Aligned_cols=23  Identities=26%  Similarity=0.371  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccc
Q 010471          480 VVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      .|++||..++|||||++.|.|.-
T Consensus        53 ~I~vvG~~saGKSSllnaL~g~~   75 (772)
T 3zvr_A           53 QIAVVGGQSAGKSSVLENFVGRD   75 (772)
T ss_dssp             EEEEEECTTTCHHHHHHHHHSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            68999999999999999999954

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=84.88  E-value=0.33  Score=54.64  Aligned_cols=26  Identities=23%  Similarity=0.364  Sum_probs=22.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      ...-+.|+||+|+||||+++.+++..
T Consensus       190 ~~~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          190 TKNNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence            34458999999999999999998765

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=84.63  E-value=0.35  Score=48.92  Aligned_cols=28  Identities=36%  Similarity=0.306  Sum_probs=22.8

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      .+|..|.|=|.=||||||++++|...+.
T Consensus        47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~   74 (376)
T 1of1_A           47 PTLLRVYIDGPHGMGKTTTTQLLVALGS   74 (376)
T ss_dssp             CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3677899999999999999999997653

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=84.17  E-value=0.6  Score=56.83  Aligned_cols=25  Identities=28%  Similarity=0.464  Sum_probs=23.3

Q ss_pred             eeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471          475 IEANEVVAIVGLSGSGKSTFVNLLL  499 (510)
Q Consensus       475 I~~Ge~vAIVG~SGSGKSTL~kLL~  499 (510)
                      +++|+.|-|.||+|+|||||+.-++
T Consensus      1424 i~~g~~vll~GppGtGKT~LA~ala 1448 (2050)
T 3cmu_A         1424 LPMGRIVEIYGPESSGKTTLTLQVI 1448 (2050)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999999999997763

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=83.94  E-value=0.35  Score=54.53  Aligned_cols=25  Identities=20%  Similarity=0.283  Sum_probs=22.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      ..+.|+||+|+|||++++.|.....
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~  613 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLF  613 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4789999999999999999988763

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=83.76  E-value=0.56  Score=45.92  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccc
Q 010471          480 VVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      .+-+-||+|+||||+++.+++-.
T Consensus        50 ~~L~~G~~G~GKT~la~~la~~l   72 (324)
T 3u61_B           50 IILHSPSPGTGKTTVAKALCHDV   72 (324)
T ss_dssp             EEEECSSTTSSHHHHHHHHHHHT
T ss_pred             EEEeeCcCCCCHHHHHHHHHHHh
Confidence            56677889999999999998654

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=83.63  E-value=0.41  Score=51.35  Aligned_cols=27  Identities=33%  Similarity=0.476  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      .++.+.|.|+.|+||||+++-+...+.
T Consensus       203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~  229 (574)
T 3e1s_A          203 GHRLVVLTGGPGTGKSTTTKAVADLAE  229 (574)
T ss_dssp             TCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             hCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999988887654

>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9

Probab=83.36  E-value=0.47  Score=51.89  Aligned_cols=28  Identities=29%  Similarity=0.502  Sum_probs=25.2

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      ...|.|-|-|+||||||.-.|.++++..
T Consensus        92 ~~nQsIiisGESGAGKTe~tK~i~~yla  119 (697)
T 1lkx_A           92 QENQCVIISGESGAGKTEASKKIMQFLT  119 (697)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEecCCCCCCchhhHHHHHHHHH
Confidence            4679999999999999999999998764

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=83.24  E-value=0.48  Score=60.05  Aligned_cols=25  Identities=40%  Similarity=0.486  Sum_probs=21.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      .-+-||||+||||||+.+.|++-+.
T Consensus       907 hGvmlVGp~gsGKTt~~~~L~~al~  931 (3245)
T 3vkg_A          907 HGVMMVGPSGGGKTTSWEVYLEAIE  931 (3245)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred             eeEEEECCCCCCHHHHHHHHHHHHH
Confidence            3478999999999999999886543

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=82.77  E-value=0.73  Score=55.28  Aligned_cols=35  Identities=23%  Similarity=0.251  Sum_probs=28.2

Q ss_pred             CCccccc-e-EEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471          465 VPILNHV-C-LTIEANEVVAIVGLSGSGKSTFVNLLL  499 (510)
Q Consensus       465 ~~vL~ni-s-ltI~~Ge~vAIVG~SGSGKSTL~kLL~  499 (510)
                      .+.|+++ + --||+|+.+.|.|++|||||+|+.-++
T Consensus        19 i~~LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla   55 (1706)
T 3cmw_A           19 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI   55 (1706)
T ss_dssp             CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHH
T ss_pred             cHHHHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHHH
Confidence            3456665 3 469999999999999999999986654

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=82.30  E-value=0.49  Score=49.36  Aligned_cols=21  Identities=29%  Similarity=0.406  Sum_probs=18.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHh
Q 010471          479 EVVAIVGLSGSGKSTFVNLLL  499 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~  499 (510)
                      -+++++|+.++|||||++-|+
T Consensus        44 ~~i~iiG~vd~GKSTLi~~Ll   64 (467)
T 1r5b_A           44 VNIVFIGHVDAGKSTLGGNIL   64 (467)
T ss_dssp             EEEEEEECGGGTHHHHHHHHH
T ss_pred             eEEEEEECCCCCHHHHHHHHH
Confidence            379999999999999998775

>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...

Probab=81.64  E-value=0.6  Score=51.57  Aligned_cols=28  Identities=25%  Similarity=0.429  Sum_probs=24.8

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      ...|.|-|-|+||||||.-.|.++++..
T Consensus       170 ~~nQsIiisGESGAGKTe~tK~i~~yla  197 (770)
T 1w9i_A          170 RQNQSLLITGESGAGKTENTKKVIQYLA  197 (770)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cCCcEEEEecCCCCcchHHHHHHHHHHH
Confidence            4678999999999999999999998753

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=81.64  E-value=0.68  Score=51.31  Aligned_cols=23  Identities=22%  Similarity=0.368  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccc
Q 010471          480 VVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      .+-|+||+|+|||++++.|....
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l  545 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESI  545 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999998765

>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*

Probab=81.58  E-value=0.57  Score=51.87  Aligned_cols=28  Identities=25%  Similarity=0.507  Sum_probs=25.0

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      +..|.|-|-|+||||||.-.|.+++++.
T Consensus       169 ~~nQsIiiSGESGAGKTe~tK~im~yla  196 (783)
T 4db1_A          169 RENQSILITGESGAGKTVNTKRVIQYFA  196 (783)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCCchHHHHHHHhhh
Confidence            4678999999999999999999998773

>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*

Probab=81.32  E-value=0.59  Score=51.86  Aligned_cols=28  Identities=25%  Similarity=0.489  Sum_probs=25.1

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      ...|.|-|-|+||||||.-.|+++++..
T Consensus       138 ~~nQsIiiSGESGAGKTe~tK~i~~yla  165 (784)
T 2v26_A          138 KLSQSIIVSGESGAGKTENTKFVLRYLT  165 (784)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEcCCCCCCceehHHHHHHHHH
Confidence            4679999999999999999999998764

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A

Probab=81.10  E-value=0.61  Score=51.82  Aligned_cols=28  Identities=29%  Similarity=0.553  Sum_probs=25.1

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      ...|.+-|-|+||||||.-.|++++++.
T Consensus       154 ~~nQsIiisGESGAGKTe~tK~i~~yla  181 (795)
T 1w7j_A          154 ERNQSIIVSGESGAGKTVSAKYAMRYFA  181 (795)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEeCCCCCCcchHHHHHHHHHH
Confidence            3678999999999999999999998764

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=80.99  E-value=0.73  Score=51.02  Aligned_cols=23  Identities=22%  Similarity=0.310  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccc
Q 010471          480 VVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      .+-|+||+|+|||++++.+....
T Consensus       490 ~~ll~G~~GtGKT~la~~la~~l  512 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLSKAL  512 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Confidence            68899999999999999998765

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=80.92  E-value=0.77  Score=42.65  Aligned_cols=26  Identities=31%  Similarity=0.266  Sum_probs=21.7

Q ss_pred             eCCCEEEEEcCCCCcHHH-HHHHHhcc
Q 010471          476 EANEVVAIVGLSGSGKST-FVNLLLRL  501 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKST-L~kLL~g~  501 (510)
                      ..|...-|.|+=|||||| |++.+-++
T Consensus        26 ~~G~I~vitG~M~sGKTT~Llr~~~r~   52 (219)
T 3e2i_A           26 HSGWIECITGSMFSGKSEELIRRLRRG   52 (219)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            478999999999999999 77877554

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=80.48  E-value=0.82  Score=52.29  Aligned_cols=23  Identities=30%  Similarity=0.273  Sum_probs=20.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHh
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLL  499 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~  499 (510)
                      +..+++|+|+.|.|||||++.+.
T Consensus       149 ~~RVV~IvGmGGIGKTTLAk~Vy  171 (1221)
T 1vt4_I          149 PAKNVLIDGVLGSGKTWVALDVC  171 (1221)
T ss_dssp             SSCEEEECCSTTSSHHHHHHHHH
T ss_pred             CCeEEEEEcCCCccHHHHHHHHH
Confidence            35799999999999999999776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	510
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	2e-21
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	3e-20
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	2e-19
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	6e-18
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	2e-17
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	1e-16
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	7e-14
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	2e-13
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	3e-13
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	3e-13
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	2e-12
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	3e-12
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	3e-12
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	7e-12
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	1e-11
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	3e-11
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	8e-11
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	1e-10
d2hyda2	323	f.37.1.1 (A:1-323) Putative multidrug export ATP-b	3e-10
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	3e-09
d3b60a2	319	f.37.1.1 (A:10-328) Multidrug resistance ABC trans	1e-08
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	3e-07
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	2e-06
d1np6a_	170	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	0.003
d1rz3a_	198	c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci	0.004

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.1 bits (226), Expect = 2e-21
 Identities = 32/69 (46%), Positives = 44/69 (63%)

Query: 441 VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 500
           +    L G VQF ++SF YP+RP V +L  +  T+   EV A+VG +GSGKST   LL  
Sbjct: 3   LTPLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQN 62

Query: 501 LYEPSDGQV 509
           LY+P+ GQ+
Sbjct: 63  LYQPTGGQL 71

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 88.0 bits (218), Expect = 3e-20
 Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 2/72 (2%)

Query: 439 EGVK-LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 497
           EG + + R  G ++F N++F YP R  VP L ++ L I A + VA+VG SGSGKST  +L
Sbjct: 2   EGKRVIDRATGDLEFRNVTFTYPGRE-VPALRNINLKIPAGKTVALVGRSGSGKSTIASL 60

Query: 498 LLRLYEPSDGQV 509
           + R Y+  +G +
Sbjct: 61  ITRFYDIDEGHI 72

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 85.6 bits (212), Expect = 2e-19
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 443 LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502
           ++   G +   ++SF Y      PIL  + L+IE  E VA VG+SG GKST +NL+ R Y
Sbjct: 10  IEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68

Query: 503 EPSDGQVC 510
           + + GQ+ 
Sbjct: 69  DVTSGQIL 76

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 81.1 bits (200), Expect = 6e-18
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +   ++ F Y       IL  +    + N ++A  G SG GKST  +LL R Y+P+ G++
Sbjct: 2   LSARHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.7 bits (199), Expect = 2e-17
 Identities = 24/103 (23%), Positives = 52/103 (50%), Gaps = 13/103 (12%)

Query: 407 MVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVP 466
           +++N+++  +     E   +L++ +  +   +   K      +V F ++          P
Sbjct: 4   IMENVTAFWE-----EGFGELLEKVQQS---NGDRKHSSDENNVSFSHLCLVGN-----P 50

Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +L ++ L IE  E++AI G +GSGK++ + L+L   E S+G +
Sbjct: 51  VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII 93

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 77.3 bits (190), Expect = 1e-16
 Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           + F NI F Y    +  IL+++ L+I+  EV+ IVG SGSGKST   L+ R Y P +GQV
Sbjct: 2   ITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 69.0 bits (169), Expect = 7e-14
 Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 3/63 (4%)

Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
           M  V+  N++  + +      +N + LTI+  E + ++G SG GK+T + ++  L EP++
Sbjct: 4   MVEVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTE 60

Query: 507 GQV 509
           G++
Sbjct: 61  GRI 63

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 67.6 bits (165), Expect = 2e-13
 Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 450 VQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
           ++  N++  Y      +  L +V L I+  E V+I+G SGSGKST +N++  L +P++G+
Sbjct: 2   IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61

Query: 509 V 509
           V
Sbjct: 62  V 62

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 67.6 bits (165), Expect = 3e-13
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +  +++   Y       +L  V L   A +V++I+G SGSGKSTF+  +  L +PS+G +
Sbjct: 3   LHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 67.4 bits (164), Expect = 3e-13
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
           M  +   N+S  +  +  V  L++V + IE  E   I+G SG+GK+TF+ ++  L  PS 
Sbjct: 1   MVRIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST 59

Query: 507 GQV 509
           G++
Sbjct: 60  GEL 62

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 65.0 bits (158), Expect = 2e-12
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
           M  V+ V++   +     V  +  + L ++  E + ++G SG GK+T + ++  L EPS 
Sbjct: 1   MAGVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSR 57

Query: 507 GQV 509
           GQ+
Sbjct: 58  GQI 60

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 64.6 bits (157), Expect = 3e-12
 Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
           M  ++  NI  ++        L+ V +++   +V  I+G +GSGKST +N++    +  +
Sbjct: 2   MEILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE 58

Query: 507 GQV 509
           G+V
Sbjct: 59  GRV 61

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 63.4 bits (154), Expect = 3e-12
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           +  ++S  Y      P+L  + +TIE   VV   G +G GK+T +  +    +P  G++
Sbjct: 4   EIRDLSVGYDK----PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 63.0 bits (153), Expect = 7e-12
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
           ++  NI+  +     T+  LN+V L + A ++  ++G SG+GKST +  +  L  P++G 
Sbjct: 2   IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61

Query: 509 V 509
           V
Sbjct: 62  V 62

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 62.3 bits (151), Expect = 1e-11
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           VQ  N++  +     V +   + L I   E V  VG SG GKST + ++  L   + G +
Sbjct: 1   VQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 61.2 bits (148), Expect = 3e-11
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
           G V   ++      +    IL  +   IE  E+  ++G +G+GK+T + ++  L +PS G
Sbjct: 1   GAVVVKDLRKRIGKKE---ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57

Query: 508 QV 509
            V
Sbjct: 58  IV 59

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 59.7 bits (144), Expect = 8e-11
 Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           ++  ++S  + +      L+++ L +E+ E   I+G +G+GK+ F+ L+   + P  G++
Sbjct: 2   IEIESLSRKWKNF----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 59.5 bits (144), Expect = 1e-10
 Identities = 10/57 (17%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510
           ++  +Y +   +  +  + L +   ++V ++G +G+GK+T ++ +  L     G++ 
Sbjct: 11  SLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64

>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 59.1 bits (141), Expect = 3e-10
 Identities = 55/318 (17%), Positives = 120/318 (37%), Gaps = 8/318 (2%)

Query: 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRF--- 176
           + R    +   K+ +   +   I+     + +P ++  A+       A+   +       
Sbjct: 2   IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTI 61

Query: 177 -----LVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLT 231
                L +  +       +R       +  ++  +R+ LY+ L      F+    VG + 
Sbjct: 62  AIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVI 121

Query: 232 SRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVY 291
           SR+  D ++  + I   +  I  + +    A   +  L   LTL+AL I  F  + V V+
Sbjct: 122 SRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181

Query: 292 GQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRES 351
               ++ +    +  A       E +  +  V+ +  E+ E   +           ++ +
Sbjct: 182 FGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241

Query: 352 MAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNL 411
                   +  T+     ++ + +G    + G ++   L  +V Y E L     R+V + 
Sbjct: 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASF 301

Query: 412 SSLLQSIGATEKVFQLID 429
           ++L QS  + ++VFQLID
Sbjct: 302 TTLTQSFASMDRVFQLID 319

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 54.9 bits (132), Expect = 3e-09
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
             L  +   + A E++ +VG +G+GKST +  +  +     G +
Sbjct: 13  TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSI 55

>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Multidrug resistance ABC transporter MsbA, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 54.6 bits (129), Expect = 1e-08
 Identities = 60/317 (18%), Positives = 129/317 (40%), Gaps = 1/317 (0%)

Query: 117 WIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAM-VFHKSSR 175
           W    R+W  I   K  ++VA  +LI+ A S+  M  +L   +     +    V      
Sbjct: 1   WQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPL 60

Query: 176 FLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLT 235
            ++ L +  GI S + S C S  +  +V  +R  L+  ++   V FFD ++ G L SR+T
Sbjct: 61  VVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRIT 120

Query: 236 ADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQ 295
            D +++++     +  ++R      G FI +   SW L++  +++   +SI + V  +  
Sbjct: 121 YDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRF 180

Query: 296 KRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG 355
           +  S   Q         A++ L   + V ++G +E E  R+     K+    ++   A  
Sbjct: 181 RSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 240

Query: 356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLL 415
           + +     +        +       ++  ++   +T        L+     + +  +   
Sbjct: 241 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQ 300

Query: 416 QSIGATEKVFQLIDLLP 432
           + + A + +F ++D   
Sbjct: 301 RGMAACQTLFAILDSEQ 317

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 49.6 bits (118), Expect = 3e-07
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 470 HVCLTIEAN-EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
            + +  E   +   ++G +G+GKS F+ L+  + +P  G+V
Sbjct: 15  RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEV 55

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 45.8 bits (107), Expect = 2e-06
 Identities = 7/29 (24%), Positives = 11/29 (37%)

Query: 481 VAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
           + I G  G GK+T V  ++          
Sbjct: 3   IIITGEPGVGKTTLVKKIVERLGKRAIGF 31

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 480 VVAIVGLSGSGKSTFVNLLLRLY 502
           ++A    SG+GK+T +  L+   
Sbjct: 4   LLAFAAWSGTGKTTLLKKLIPAL 26

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)

Query: 468 LNHVCLTIEANE-----VVAIVGLSGSGKSTFVNLLLRLYEPSD 506
           ++ +C TI A +     V+ I GLS SGK+T  N L +      
Sbjct: 7   IDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQG 50

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	510
d3b60a2	319	Multidrug resistance ABC transporter MsbA, N-termi	100.0
d2hyda2	323	Putative multidrug export ATP-binding/permease pro	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.84
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.82
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.81
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.8
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.79
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.68
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.66
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.66
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.66
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.65
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.64
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.63
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.63
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.62
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.6
d3b60a2	319	Multidrug resistance ABC transporter MsbA, N-termi	97.59
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.49
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.2
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.45
d2hyda2	323	Putative multidrug export ATP-binding/permease pro	96.38
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.09
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.9
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.86
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.66
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.6
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	95.55
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.53
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.41
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.36
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	95.31
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.23
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	95.11
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	94.87
d1xpua3	289	Transcription termination factor Rho, ATPase domai	94.76
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	94.69
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	94.69
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	94.59
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	94.55
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.45
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	94.37
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	94.34
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.32
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	94.24
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	94.19
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	94.07
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.94
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	93.82
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	93.75
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	93.56
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	93.51
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	93.5
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	93.38
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	93.38
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	93.24
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.03
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	93.03
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	93.03
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	92.99
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.71
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	92.61
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	92.51
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	92.44
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	91.85
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	91.15
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	90.52
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	90.23
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	90.03
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	89.85
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	89.84
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	89.8
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	89.43
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	89.25
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	88.91
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	87.61
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	85.43
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	85.36
d1tuea_	205	Replication protein E1 helicase domain {Human papi	84.84
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	84.57
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	83.96
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	83.95
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	83.85
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	82.94
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	82.34
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	81.83
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	81.49
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	80.48

>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Multidrug resistance ABC transporter MsbA, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=3.5e-35  Score=290.08  Aligned_cols=317  Identities=19%  Similarity=0.272  Sum_probs=285.6

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          117 WIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REEAMVFHKSSRFLVLLCVTSGIFSGLRSGCF  195 (510)
Q Consensus       117 ~~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~  195 (510)
                      |+.+||+|++++|||+.++.++++.++.+++....|.+++..++... .++..........+.++.++..++.+++.+..
T Consensus         1 Wk~~krl~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~   80 (319)
T d3b60a2           1 WQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCI   80 (319)
T ss_dssp             CHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence            67899999999999999999999999999999999998888876532 23332222222233444566677888899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010471          196 SIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTL  275 (510)
Q Consensus       196 ~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~l  275 (510)
                      ...+.++..++|.++++|++++|+++|+++++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|++++
T Consensus        81 ~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l  160 (319)
T d3b60a2          81 SWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSI  160 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHH
T ss_pred             hhhhhccccchhhHHHHhhcccchhhccccccccccccccccccccccccccccchhhhhhhhhhhHHHHHHhhhccchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          276 SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG  355 (510)
Q Consensus       276 i~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (510)
                      ++++..|+..++.....++.++..++.++..++.++.+.|.++|++++|+++.|+.+.+++++..++..+...|.....+
T Consensus       161 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (319)
T d3b60a2         161 ILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS  240 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhccchhhhhhhhhhhhhhHHHHHHHHHHH
Confidence            99999999999988888988898888999999999999999999999999999999999999999999999999887777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 010471          356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS  433 (510)
Q Consensus       356 ~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e  433 (510)
                      .......++.....++++++|++++.+|++|+|++++++.+...+..|+..+.+.+..+.++.++.+|+.|++|.+||
T Consensus       241 ~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E  318 (319)
T d3b60a2         241 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE  318 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             hcccchhhhhhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            777788888888888889999999999999999999999999999999999999999999999999999999998876

>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=8.1e-34  Score=281.06  Aligned_cols=314  Identities=18%  Similarity=0.228  Sum_probs=276.6

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchh-----hhHHHHHHH---HHHHHHHHHHHHHHHHH
Q 010471          120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-----EAMVFHKSS---RFLVLLCVTSGIFSGLR  191 (510)
Q Consensus       120 l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~-----~~~~~~~~~---~~l~~l~~~~~~~~~i~  191 (510)
                      +||++++++|||+.++.+++++++.+++.+..|++++..++.....     +........   ..+.++.++..++.+++
T Consensus         2 lKrl~~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (323)
T d2hyda2           2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR   81 (323)
T ss_dssp             HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999888877653211     111111011   11122334455667788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010471          192 SGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSW  271 (510)
Q Consensus       192 ~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~  271 (510)
                      .+.....+.++..++|.++++|++++|+++|+++++||+++|+++|++++++.+...+..++..++..++.+++++.++|
T Consensus        82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~  161 (323)
T d2hyda2          82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDV  161 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhhhcccccccccccccccccccchhhhhhccchhhhhhhcchhhhhhhhhhhhhhhhhh
Confidence            88888899999999999999999999999999999999999999999999999888888888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q 010471          272 PLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRES  351 (510)
Q Consensus       272 ~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~  351 (510)
                      +++++.++..|+..++...+.++.++..++.++..++.++.+.|.++|+++||+|+.|+++.++|++..++..+...|..
T Consensus       162 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~  241 (323)
T d2hyda2         162 KLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT  241 (323)
T ss_dssp             TTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhhccchhhhhcccccccchhhHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 010471          352 MAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLL  431 (510)
Q Consensus       352 ~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~  431 (510)
                      ...+........+..+..++++++|++++.+|.+|+|++++++.+...+..|+..+.+.+.++.++..+.+|+.|++|++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e  321 (323)
T d2hyda2         242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDED  321 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             hhhhhccccccccchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            77777778888888888889999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CC
Q 010471          432 PS  433 (510)
Q Consensus       432 ~e  433 (510)
                      ||
T Consensus       322 ~e  323 (323)
T d2hyda2         322 YD  323 (323)
T ss_dssp             CS
T ss_pred             CC
Confidence            65

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=9.8e-22  Score=188.69  Aligned_cols=66  Identities=48%  Similarity=0.815  Sum_probs=61.7

Q ss_pred             CccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          445 RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       445 ~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ..+|.|+|+||||+||++++.++|+||||+|++||++|||||||||||||+++|+|+|+|++|+|+
T Consensus         7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~   72 (251)
T d1jj7a_           7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLL   72 (251)
T ss_dssp             CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             cccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEE
Confidence            456889999999999987667899999999999999999999999999999999999999999984

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.82  E-value=4.9e-21  Score=183.97  Aligned_cols=65  Identities=45%  Similarity=0.816  Sum_probs=60.4

Q ss_pred             CccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          445 RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       445 ~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ...|+|+|+||+|+|+++ +.++|+||||+|++||++|||||||||||||+++|+|+|+|++|+|+
T Consensus         9 ~~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~   73 (253)
T d3b60a1           9 RATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL   73 (253)
T ss_dssp             CCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEE
T ss_pred             CCceEEEEEEEEEEeCCC-CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEE
Confidence            456889999999999865 36799999999999999999999999999999999999999999984

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=8e-21  Score=180.93  Aligned_cols=61  Identities=46%  Similarity=0.773  Sum_probs=57.2

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      +|+|+||||+|+++ +++||+||||+|++||++||||+||||||||+++|+|+|+|++|+|+
T Consensus         1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~   61 (241)
T d2pmka1           1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL   61 (241)
T ss_dssp             EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             CeEEEEEEEEeCCC-CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEE
Confidence            59999999999754 46799999999999999999999999999999999999999999984

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.80  E-value=1.4e-20  Score=180.65  Aligned_cols=65  Identities=42%  Similarity=0.749  Sum_probs=60.2

Q ss_pred             CccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          445 RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       445 ~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ..+|+|+|+||+|+|+++ +.+||+||||+|++||++||||+||||||||+++|+|+|+|++|+|+
T Consensus        12 ~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~   76 (255)
T d2hyda1          12 IKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL   76 (255)
T ss_dssp             CCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEE
T ss_pred             CCCCEEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccc
Confidence            346899999999999865 36899999999999999999999999999999999999999999984

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.79  E-value=1.8e-20  Score=178.89  Aligned_cols=59  Identities=32%  Similarity=0.643  Sum_probs=55.8

Q ss_pred             EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |++|||||+|+++  ++||+||||+|++||++|||||||||||||+++|+|+|+|++|+|+
T Consensus         2 le~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~   60 (242)
T d1mv5a_           2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT   60 (242)
T ss_dssp             EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEE
T ss_pred             EEEEEEEEECCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEE
Confidence            7999999999753  5799999999999999999999999999999999999999999984

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.68  E-value=4.2e-18  Score=160.28  Aligned_cols=61  Identities=36%  Similarity=0.580  Sum_probs=55.4

Q ss_pred             EEEEeeeEECCCCCC-CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~-~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++||+++|++++. ..||+||||+|++||.+||+||||||||||+++|+|+++|++|+|+
T Consensus         2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~   63 (230)
T d1l2ta_           2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVY   63 (230)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeE
Confidence            899999999975421 2479999999999999999999999999999999999999999984

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.66  E-value=1.7e-17  Score=156.70  Aligned_cols=60  Identities=28%  Similarity=0.541  Sum_probs=56.3

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ..|+++||+++|++   ..||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus         5 ~~I~v~nlsk~yg~---~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~   64 (239)
T d1v43a3           5 VEVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY   64 (239)
T ss_dssp             CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred             CeEEEEEEEEEECC---EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEE
Confidence            46999999999963   5799999999999999999999999999999999999999999984

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.66  E-value=1.1e-17  Score=158.24  Aligned_cols=61  Identities=33%  Similarity=0.523  Sum_probs=56.7

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|+++ +..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.
T Consensus         3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~   63 (242)
T d1oxxk2           3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY   63 (242)
T ss_dssp             CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEE
T ss_pred             EEEEEeEEEEECCC-CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEE
Confidence            59999999999743 35799999999999999999999999999999999999999999984

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=2.1e-17  Score=156.30  Aligned_cols=61  Identities=30%  Similarity=0.543  Sum_probs=55.6

Q ss_pred             EEEEeeeEECCCCCC-CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          450 VQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       450 I~f~nVsF~Y~~~~~-~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |+++||+++|+++.. ..||+||||+|++||.+||+||||||||||+++|.|+.+|++|+|.
T Consensus         2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~   63 (240)
T d3dhwc1           2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVL   63 (240)
T ss_dssp             EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceE
Confidence            799999999975432 2589999999999999999999999999999999999999999984

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.65  E-value=3.3e-17  Score=154.94  Aligned_cols=59  Identities=29%  Similarity=0.510  Sum_probs=55.6

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|.+   ..||+||||+|++||.+||+||||||||||+++|+|+++|++|+|.
T Consensus         3 ~i~v~nl~k~yg~---~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~   61 (240)
T d1g2912           3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY   61 (240)
T ss_dssp             EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred             cEEEEeEEEEECC---EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEE
Confidence            5999999999953   5699999999999999999999999999999999999999999984

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.64  E-value=4.3e-17  Score=156.38  Aligned_cols=59  Identities=34%  Similarity=0.590  Sum_probs=55.5

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      .|+++||+++|.+   .+||+||||+|++||++|||||||||||||+++|+|+++|++|+|+
T Consensus         2 ~Lev~nl~k~yg~---~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~   60 (258)
T d1b0ua_           2 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII   60 (258)
T ss_dssp             CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             eEEEEEEEEEECC---EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEE
Confidence            4899999999953   4699999999999999999999999999999999999999999984

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=7.8e-18  Score=163.83  Aligned_cols=59  Identities=34%  Similarity=0.569  Sum_probs=50.4

Q ss_pred             cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      ...|.|+|++|.+     +|||+||||+|++||++|||||||||||||+++|+|+|+|++|+|+
T Consensus        36 ~~~i~~~~~~~~g-----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~   94 (281)
T d1r0wa_          36 ENNVSFSHLCLVG-----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIK   94 (281)
T ss_dssp             ----CHHHHHHTT-----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred             CCcEEEEEcCCCC-----CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEE
Confidence            4567788777643     4799999999999999999999999999999999999999999984

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.63  E-value=7.2e-17  Score=153.06  Aligned_cols=60  Identities=28%  Similarity=0.500  Sum_probs=56.4

Q ss_pred             ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      |.|+++||+.+|.+   ++||+|+||+|++||++|||||||||||||+|+|+|+++|++|+|.
T Consensus         1 gaI~v~nl~k~yg~---~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~   60 (238)
T d1vpla_           1 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT   60 (238)
T ss_dssp             CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             CCEEEEeEEEEECC---EEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE
Confidence            57999999999964   5799999999999999999999999999999999999999999984

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.62  E-value=8.9e-17  Score=152.73  Aligned_cols=59  Identities=17%  Similarity=0.427  Sum_probs=55.6

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      -|+++||+++|++   ..||+||||+|++||++||+||||||||||+++|+|+++|++|+|+
T Consensus         6 ~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~   64 (240)
T d1ji0a_           6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII   64 (240)
T ss_dssp             EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             EEEEeeEEEEECC---EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEE
Confidence            5899999999963   4699999999999999999999999999999999999999999984

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.60  E-value=1.6e-16  Score=152.28  Aligned_cols=59  Identities=27%  Similarity=0.491  Sum_probs=55.6

Q ss_pred             cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471          449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC  510 (510)
Q Consensus       449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~  510 (510)
                      -|+++|||.+|++   .+||+||||+|++||++||+||||||||||+++|+|+++|++|+|.
T Consensus         4 iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~   62 (254)
T d1g6ha_           4 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY   62 (254)
T ss_dssp             EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             eEEEEEEEEEECC---eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEE
Confidence            5899999999964   4699999999999999999999999999999999999999999984

>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Multidrug resistance ABC transporter MsbA, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.59  E-value=0.028  Score=51.77  Aligned_cols=236  Identities=11%  Similarity=0.013  Sum_probs=97.2

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 010471          122 RMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFL---VLLCVTSGIFSGLRSGCFSIA  198 (510)
Q Consensus       122 ~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l---~~l~~~~~~~~~i~~~~~~~~  198 (510)
                      +.++.+.++.+.....+++.++.+++....+......+ . ..-|...-..+...+   .++.++..++..+..+.....
T Consensus         2 k~~krl~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~-~-~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~   79 (319)
T d3b60a2           2 QTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLL-K-PLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYC   79 (319)
T ss_dssp             HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHH-T-HHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHhccCCHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence            34555556655555555555555555444443322222 1 111211111122222   233333344455555555566


Q ss_pred             HHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 010471          199 NIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTAD-----CQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPL  273 (510)
Q Consensus       199 ~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D-----~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l  273 (510)
                      ..+...++..++-+++.+.    ..+.+.+..-++=+.|     .+.++. +...+.......+..+...+..+.+-..+
T Consensus        80 ~~~~~~~~~~~l~~~~~~~----ll~~~~~~~~~~~~g~~~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  154 (319)
T d3b60a2          80 ISWVSGKVVMTMRRRLFGH----MMGMPVAFFDKQSTGTLLSRITYDSEQ-VASSSSGALITVVREGASIIGLFIMMFYY  154 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHH----HHTCCSTHHHHSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhccccchhhHHHHh----hcccchhhccccccccccccccccccc-cccccccccchhhhhhhhhhhHHHHHHhh
Confidence            6666666666666666443    3344444443322222     222222 22233333333333333334444443333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          274 TLSALLICSFLSIIVSVYGQY-QKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESM  352 (510)
Q Consensus       274 ~li~li~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~  352 (510)
                      .....+.+.+...+....... .++..+..++..+...+.....-+.++-++....-+.+... .+..++..+...+...
T Consensus       155 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~-~~~~~~~~~~~~~~~~  233 (319)
T d3b60a2         155 SWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVE-TKRFDKVSNKMRLQGM  233 (319)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHH-HHHHHHHHHHHHHHHH
T ss_pred             hccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhccchh-hhhhhhhhhhhhHHHH
Confidence            333333333333333333333 34444333333333333333333444555555544444433 3334444444444433


Q ss_pred             HHHHHHHHHHHHH
Q 010471          353 AYGLWNMSFITLY  365 (510)
Q Consensus       353 ~~~~~~~~~~~l~  365 (510)
                      .............
T Consensus       234 ~~~~~~~~~~~~~  246 (319)
T d3b60a2         234 KMVSASSISDPII  246 (319)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccch
Confidence            4444444444333

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.49  E-value=2.9e-05  Score=71.09  Aligned_cols=33  Identities=27%  Similarity=0.411  Sum_probs=26.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      +|++++++|+||.|||||+|.|.+-..-.-|+|
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~v  126 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV  126 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhhhccCc
Confidence            699999999999999999999988666555554

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.20  E-value=3.5e-05  Score=70.76  Aligned_cols=33  Identities=21%  Similarity=0.365  Sum_probs=23.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV  509 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I  509 (510)
                      +|++++++|+||.|||||+|.|.+-..-.-|+|
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~v  128 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEI  128 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC---------
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhccc
Confidence            689999999999999999999998766655655

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.45  E-value=0.00049  Score=66.39  Aligned_cols=33  Identities=24%  Similarity=0.501  Sum_probs=28.7

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD  506 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s  506 (510)
                      -++.|+.+.|+|+.||||||+++.|+++.+|+.
T Consensus       162 ~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~  194 (323)
T d1g6oa_         162 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE  194 (323)
T ss_dssp             HHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred             HHHhCCCEEEEeeccccchHHHHHHhhhccccc
Confidence            355677799999999999999999999998754

>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.38  E-value=0.34  Score=44.03  Aligned_cols=81  Identities=14%  Similarity=0.014  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471          281 CSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMS  360 (510)
Q Consensus       281 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (510)
                      +++..+.........++..+...+......+.....-+.++-+|.-..-+.+....++.. +..+...+...........
T Consensus       168 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~-~~~~~~~~~~~k~~~~~~~  246 (323)
T d2hyda2         168 LFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFD-KKNTNFLTRALKHTRWNAY  246 (323)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhhccchhhhh-cccccccchhhHHhhhhhh
Confidence            333333333444444444444444444444444444556666666666555554444333 3333333333333333333


Q ss_pred             HH
Q 010471          361 FI  362 (510)
Q Consensus       361 ~~  362 (510)
                      ..
T Consensus       247 ~~  248 (323)
T d2hyda2         247 SF  248 (323)
T ss_dssp             HH
T ss_pred             cc
Confidence            33

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.09  E-value=0.0012  Score=61.39  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccc
Q 010471          480 VVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      .++|+|++|+|||||+|.|+|--
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            49999999999999999999853

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.90  E-value=0.0016  Score=62.02  Aligned_cols=23  Identities=35%  Similarity=0.504  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccc
Q 010471          480 VVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +|||-|+|||||||+++.|..+.
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL  104 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHH
Confidence            67999999999999999987664

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.86  E-value=0.0022  Score=57.87  Aligned_cols=24  Identities=25%  Similarity=0.463  Sum_probs=22.0

Q ss_pred             eeCCCEEEEEcCCCCcHHHHHHHH
Q 010471          475 IEANEVVAIVGLSGSGKSTFVNLL  498 (510)
Q Consensus       475 I~~Ge~vAIVG~SGSGKSTL~kLL  498 (510)
                      +|+|+.+-|.|++||||||++.-+
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~   54 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTL   54 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHH
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHH
Confidence            899999999999999999999544

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.66  E-value=0.0028  Score=62.70  Aligned_cols=24  Identities=46%  Similarity=0.659  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcccC
Q 010471          480 VVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      .|||+|++|+|||||+|.|.|...
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G~~~   81 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRGIGN   81 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            489999999999999999998653

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.60  E-value=0.0024  Score=58.14  Aligned_cols=23  Identities=30%  Similarity=0.556  Sum_probs=21.3

Q ss_pred             eeCCCEEEEEcCCCCcHHHHHHH
Q 010471          475 IEANEVVAIVGLSGSGKSTFVNL  497 (510)
Q Consensus       475 I~~Ge~vAIVG~SGSGKSTL~kL  497 (510)
                      +|+|+.+-|.|++||||||++--
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq   55 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHT   55 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHH
Confidence            78999999999999999999853

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.55  E-value=0.0026  Score=58.56  Aligned_cols=25  Identities=20%  Similarity=0.365  Sum_probs=21.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      +-+.++||+||||||+++.|++-+.
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3588999999999999999988654

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.003  Score=57.34  Aligned_cols=25  Identities=24%  Similarity=0.336  Sum_probs=22.7

Q ss_pred             eeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471          475 IEANEVVAIVGLSGSGKSTFVNLLL  499 (510)
Q Consensus       475 I~~Ge~vAIVG~SGSGKSTL~kLL~  499 (510)
                      ||+|+.+-|.|++||||||++.-++
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHH
Confidence            7899999999999999999986554

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.41  E-value=0.0037  Score=56.32  Aligned_cols=25  Identities=28%  Similarity=0.497  Sum_probs=22.6

Q ss_pred             eeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471          475 IEANEVVAIVGLSGSGKSTFVNLLL  499 (510)
Q Consensus       475 I~~Ge~vAIVG~SGSGKSTL~kLL~  499 (510)
                      +++|+.+-|.|++|+||||++.-++
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence            8999999999999999999985554

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.36  E-value=0.0035  Score=59.78  Aligned_cols=27  Identities=22%  Similarity=0.448  Sum_probs=22.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      |+.-+.++||+|||||.|+|.|++.+.
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~   74 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLAN   74 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccc
Confidence            445677999999999999999998753

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.31  E-value=0.0031  Score=57.18  Aligned_cols=27  Identities=22%  Similarity=0.375  Sum_probs=23.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471          481 VAIVGLSGSGKSTFVNLLLRLYEPSDG  507 (510)
Q Consensus       481 vAIVG~SGSGKSTL~kLL~g~y~p~sG  507 (510)
                      +-+.||+|+||||++++|+.-+....+
T Consensus        38 ~L~~GPpGtGKT~lA~~la~~~~~~~~   64 (238)
T d1in4a2          38 VLLAGPPGLGKTTLAHIIASELQTNIH   64 (238)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred             EEEECCCCCcHHHHHHHHHhccCCCcc
Confidence            679999999999999999987765543

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.23  E-value=0.0043  Score=56.84  Aligned_cols=24  Identities=21%  Similarity=0.504  Sum_probs=20.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhc
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      .++.+.|+|++|+|||||++-++.
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHH
Confidence            567899999999999999987654

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.11  E-value=0.0051  Score=56.09  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=21.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      ..+-|.||+|+||||++++|++-+.
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHH
Confidence            3467999999999999999998553

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=94.87  E-value=0.0069  Score=56.02  Aligned_cols=28  Identities=21%  Similarity=0.321  Sum_probs=23.4

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      ++...+-+.||+|||||++++.|++.+.
T Consensus        43 ~~~~~iLL~GppGtGKT~la~~iA~~~~   70 (256)
T d1lv7a_          43 KIPKGVLMVGPPGTGKTLLAKAIAGEAK   70 (256)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence            3446688999999999999999997654

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=94.76  E-value=0.0059  Score=57.25  Aligned_cols=30  Identities=17%  Similarity=0.222  Sum_probs=26.8

Q ss_pred             ceEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471          471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       471 isltI~~Ge~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      .=+.|-+||+.+|+|++|+|||||+.-+.+
T Consensus        36 ~l~PigrGQr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          36 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             HHSCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred             ecccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence            447899999999999999999999988765

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.69  E-value=0.0068  Score=54.61  Aligned_cols=21  Identities=33%  Similarity=0.384  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcc
Q 010471          481 VAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       481 vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      +-|.||+|+||||+++.+++-
T Consensus        48 lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          48 LLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             EEEESCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999999864

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.69  E-value=0.0081  Score=54.77  Aligned_cols=27  Identities=26%  Similarity=0.487  Sum_probs=23.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471          478 NEVVAIVGLSGSGKSTFVNLLLRLYEP  504 (510)
Q Consensus       478 Ge~vAIVG~SGSGKSTL~kLL~g~y~p  504 (510)
                      ...+.|+||+|+||||+++.++..++-
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~l~~   69 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWELYKD   69 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHhc
Confidence            357899999999999999999987653

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.59  E-value=0.0072  Score=54.37  Aligned_cols=21  Identities=24%  Similarity=0.401  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcc
Q 010471          481 VAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       481 vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      +-|.||+|+||||+++.+++-
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            679999999999999999875

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=94.55  E-value=0.0076  Score=54.55  Aligned_cols=23  Identities=22%  Similarity=0.439  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcccC
Q 010471          481 VAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       481 vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      +-+.||+|+||||+++++++-+.
T Consensus        38 ~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            56999999999999999998654

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.45  E-value=0.0087  Score=55.54  Aligned_cols=28  Identities=18%  Similarity=0.303  Sum_probs=24.1

Q ss_pred             eeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          475 IEANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +++...+-+.||+|||||++++.+++.+
T Consensus        38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          38 MTPSKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence            4566679999999999999999998854

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=94.37  E-value=0.011  Score=50.20  Aligned_cols=32  Identities=25%  Similarity=0.253  Sum_probs=27.4

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS  505 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~  505 (510)
                      ..+||.++++.|+=||||||++|-+++-+..+
T Consensus        29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             cCCCCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            34689999999999999999999988776543

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=94.34  E-value=0.0074  Score=57.89  Aligned_cols=25  Identities=32%  Similarity=0.499  Sum_probs=21.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          478 NEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       478 Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      .-+|||+|+.|+|||||++-|.+.+
T Consensus        54 ~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          54 TLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             ceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999887544

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.32  E-value=0.011  Score=54.61  Aligned_cols=32  Identities=38%  Similarity=0.469  Sum_probs=24.7

Q ss_pred             cccceEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471          468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL  499 (510)
Q Consensus       468 L~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~  499 (510)
                      |+++.-=+.+|+.+.|.|+||+||||++.-++
T Consensus        25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred             HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            44443236899999999999999999975544

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.24  E-value=0.0083  Score=53.81  Aligned_cols=21  Identities=38%  Similarity=0.526  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcc
Q 010471          481 VAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       481 vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      +-+.||+|+||||+++++++-
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHH
Confidence            679999999999999998763

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=94.19  E-value=0.014  Score=53.98  Aligned_cols=30  Identities=23%  Similarity=0.349  Sum_probs=25.4

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      =||+|+.+-|.|++|||||||+--++.-.+
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q   79 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ   79 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence            588999999999999999999866665443

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.07  E-value=0.01  Score=54.48  Aligned_cols=23  Identities=22%  Similarity=0.241  Sum_probs=20.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhcc
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      ..+-+.||+|||||++++.|++-
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhc
Confidence            46889999999999999999865

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.94  E-value=0.016  Score=53.38  Aligned_cols=29  Identities=34%  Similarity=0.398  Sum_probs=23.5

Q ss_pred             CccccceEEeeCCCEEEEEcCCCCcHHHHHHHH
Q 010471          466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL  498 (510)
Q Consensus       466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL  498 (510)
                      .++.++    .||+.+.|+|++|+||||++--|
T Consensus        21 ~li~G~----~pg~~~~i~G~~G~GKS~l~l~l   49 (274)
T d1nlfa_          21 YVLPNM----VAGTVGALVSPGGAGKSMLALQL   49 (274)
T ss_dssp             EEETTE----ETTSEEEEEESTTSSHHHHHHHH
T ss_pred             HHhCCc----cCCcEEEEEeCCCCCHHHHHHHH
Confidence            366663    46999999999999999998544

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=93.82  E-value=0.016  Score=53.14  Aligned_cols=23  Identities=26%  Similarity=0.323  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccc
Q 010471          480 VVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      -+-+.||+|||||++++.|++.+
T Consensus        44 giLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEecCCCCChhHHHHHHHHHc
Confidence            47899999999999999998754

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.75  E-value=0.016  Score=53.43  Aligned_cols=24  Identities=17%  Similarity=0.278  Sum_probs=20.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhccc
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      .-+-+.||+|||||++++.+++..
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceeEEecCCCCCchHHHHHHHHHh
Confidence            348899999999999999999843

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.56  E-value=0.024  Score=51.42  Aligned_cols=48  Identities=21%  Similarity=0.234  Sum_probs=31.0

Q ss_pred             ccEEEEeeeEECCC----CCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHH
Q 010471          448 GHVQFVNISFHYPS----RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL  498 (510)
Q Consensus       448 ~~I~f~nVsF~Y~~----~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL  498 (510)
                      +.+++++.  ++|=    .++..|=+|++++ +.++.+-|.||+.|||||++|.+
T Consensus        10 ~~l~i~~~--rHPlle~~~~~~~VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i   61 (234)
T d1wb9a2          10 PGIRITEG--RHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQT   61 (234)
T ss_dssp             SCEEEEEE--CCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHH
T ss_pred             CcEEEEEe--ECCEEEcccCCCccceeEEEC-CCceEEEEeccCchhhHHHHHHH
Confidence            34666653  4441    1123455555554 33467889999999999999976

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=93.51  E-value=0.015  Score=57.96  Aligned_cols=25  Identities=24%  Similarity=0.488  Sum_probs=22.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      +=+-+|||||||||-|++-|+++.+
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~l~   74 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKLAN   74 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             ccEEEECCCCCCHHHHHHHHHHHhC
Confidence            3578999999999999999999765

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.50  E-value=0.013  Score=52.32  Aligned_cols=21  Identities=29%  Similarity=0.450  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcc
Q 010471          481 VAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       481 vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      +-+.||.|+||||+++++++-
T Consensus        38 lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHH
Confidence            679999999999999999874

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.38  E-value=0.016  Score=53.88  Aligned_cols=33  Identities=21%  Similarity=0.254  Sum_probs=26.8

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD  506 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s  506 (510)
                      =+|.|+.+-|.|++||||||++--++.-++-..
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g   88 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAG   88 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTT
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHhcCC
Confidence            478999999999999999999876665544333

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.38  E-value=0.042  Score=49.43  Aligned_cols=46  Identities=30%  Similarity=0.339  Sum_probs=29.5

Q ss_pred             cEEEEeeeEECCC--CCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471          449 HVQFVNISFHYPS--RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL  499 (510)
Q Consensus       449 ~I~f~nVsF~Y~~--~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~  499 (510)
                      .+++++.  ++|=  .++..|=+|+++  . ++.+-|.||+.|||||++|-+.
T Consensus         9 ~~~i~~~--rHPlle~~~~~VpNdi~~--~-~~~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2           9 RLQIRAG--RHPVVERRTEFVPNDLEM--A-HELVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             SEEEEEE--CCTTGGGTSCCCCEEEEE--S-SCEEEEESCSSSSHHHHHHHHH
T ss_pred             cEEEEeC--cCCEEcCCCCeecceEEe--C-CcEEEEECCCccccchhhhhhH
Confidence            3666643  4541  112234455544  3 4688999999999999999653

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.24  E-value=0.017  Score=52.25  Aligned_cols=21  Identities=33%  Similarity=0.441  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcc
Q 010471          481 VAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       481 vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      +-|.||.|+||||+++.++.-
T Consensus        36 lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            679999999999999999875

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.03  E-value=0.022  Score=56.06  Aligned_cols=33  Identities=27%  Similarity=0.400  Sum_probs=25.8

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhcccCCCCce
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ  508 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~  508 (510)
                      .++-.+-+.||+||||||.+..+++..+.+...
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~  188 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN  188 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhcCCCce
Confidence            466789999999999999999888865433333

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.03  E-value=0.02  Score=53.35  Aligned_cols=24  Identities=50%  Similarity=0.513  Sum_probs=21.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhccc
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      .+|+|+|+-++|||||++.|+|-.
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCC
Confidence            489999999999999999998754

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=93.03  E-value=0.019  Score=55.62  Aligned_cols=30  Identities=30%  Similarity=0.329  Sum_probs=27.1

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      .+|++..+.++||.|+||||+++.|+++..
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            458889999999999999999999998764

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.99  E-value=0.02  Score=53.25  Aligned_cols=31  Identities=16%  Similarity=0.327  Sum_probs=26.6

Q ss_pred             cceEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471          470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       470 nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      |.=+++-+||+++|.|++|+|||||+.-+++
T Consensus        60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             HHHSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred             eeeccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence            4457899999999999999999999766654

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.71  E-value=0.021  Score=54.18  Aligned_cols=26  Identities=19%  Similarity=0.226  Sum_probs=22.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          478 NEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       478 Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      ...+.++||||+|||.|++.|++.+.
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~~l~   77 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSKALG   77 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEEECCCcchhHHHHHHHHhhcc
Confidence            34578999999999999999998763

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.61  E-value=0.027  Score=52.38  Aligned_cols=23  Identities=30%  Similarity=0.388  Sum_probs=20.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHhc
Q 010471          478 NEVVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       478 Ge~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      ..+++|+|..|.|||||++-+.+
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999987743

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=92.51  E-value=0.025  Score=52.44  Aligned_cols=30  Identities=20%  Similarity=0.307  Sum_probs=25.8

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      =||.|..+-|-|++||||||++-.++.-.+
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~~aq   82 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVAQAQ   82 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CccCceEEEEecCCccchHHHHHHHHHHHH
Confidence            478999999999999999999977765444

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.44  E-value=0.025  Score=53.94  Aligned_cols=25  Identities=40%  Similarity=0.496  Sum_probs=21.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          478 NEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       478 Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      .-+++|+|+-|+|||||+.-|.+.+
T Consensus        51 ~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          51 AIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            4579999999999999998777543

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=91.85  E-value=0.026  Score=51.55  Aligned_cols=22  Identities=23%  Similarity=0.418  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhccc
Q 010471          481 VAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       481 vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +.++||.|+||||+++.+++-+
T Consensus        49 l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHHH
Confidence            5567999999999999998653

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=91.15  E-value=0.03  Score=52.05  Aligned_cols=33  Identities=12%  Similarity=0.233  Sum_probs=27.2

Q ss_pred             ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471          467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      +++ .=++|-+||+++|+|++|+|||+|+..+..
T Consensus        57 ~ID-~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~   89 (276)
T d1fx0a3          57 AID-AMIPVGRGQRELIIGDRQTGKTAVATDTIL   89 (276)
T ss_dssp             TTT-TTSCCBTTCBCBEEESSSSSHHHHHHHHHH
T ss_pred             EEe-ccccccCCceEeeccCCCCChHHHHHHHHh
Confidence            443 447899999999999999999999976543

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=90.52  E-value=0.035  Score=52.81  Aligned_cols=25  Identities=40%  Similarity=0.430  Sum_probs=21.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      --+-|+|+.|+|||||++.+.++.+
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iLp   53 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALLP   53 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CeEEEECCCCccHHHHHHHHHHhCC
Confidence            3568999999999999999988764

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=90.23  E-value=0.061  Score=52.00  Aligned_cols=23  Identities=26%  Similarity=0.577  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcccC
Q 010471          481 VAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       481 vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      +-++||||+|||-|+|.|+++.+
T Consensus        71 iLfiGPTGvGKTElAk~LA~~~~   93 (364)
T d1um8a_          71 ILLIGPTGSGKTLMAQTLAKHLD   93 (364)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eeeeCCCCccHHHHHHHHHhhcc
Confidence            56889999999999999998763

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.03  E-value=0.042  Score=51.19  Aligned_cols=29  Identities=17%  Similarity=0.177  Sum_probs=25.1

Q ss_pred             cceEEeeCCCEEEEEcCCCCcHHHHHHHH
Q 010471          470 HVCLTIEANEVVAIVGLSGSGKSTFVNLL  498 (510)
Q Consensus       470 nisltI~~Ge~vAIVG~SGSGKSTL~kLL  498 (510)
                      |.-++|-+||+++|+|++|+|||||+.-+
T Consensus        60 D~l~pig~GQr~~If~~~g~GKt~ll~~~   88 (285)
T d2jdia3          60 DSLVPIGRGQRELIIGDRQTGKTSIAIDT   88 (285)
T ss_dssp             HHHSCCBTTCBCEEEESTTSSHHHHHHHH
T ss_pred             ecccCccCCCEEEeecCCCCChHHHHHHH
Confidence            45579999999999999999999997544

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=89.85  E-value=0.073  Score=49.09  Aligned_cols=22  Identities=32%  Similarity=0.368  Sum_probs=19.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhc
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      .-+.|||++|.|||+++.-|++
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHH
Confidence            3578999999999999988775

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=89.84  E-value=0.063  Score=48.36  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccc
Q 010471          480 VVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      .+-|.||+|+||||+++++++..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~l   58 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKGL   58 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Confidence            46789999999999999987654

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=89.80  E-value=0.078  Score=46.41  Aligned_cols=21  Identities=29%  Similarity=0.460  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 010471          480 VVAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       480 ~vAIVG~SGSGKSTL~kLL~g  500 (510)
                      -+.|||++|.|||+++.-|++
T Consensus        45 n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHH
Confidence            468999999999999987775

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=89.43  E-value=0.075  Score=52.05  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=17.9

Q ss_pred             CEEEEEcCCCCcHHHHHH-HHhcc
Q 010471          479 EVVAIVGLSGSGKSTFVN-LLLRL  501 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~k-LL~g~  501 (510)
                      +-+.|+|+||||||++++ ++...
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~   74 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTG   74 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHH
Confidence            348999999999999985 44333

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.25  E-value=0.09  Score=46.64  Aligned_cols=20  Identities=25%  Similarity=0.406  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 010471          481 VAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       481 vAIVG~SGSGKSTL~kLL~g  500 (510)
                      +-|.|++|||||-|++.++.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~   58 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGN   58 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            68999999999999987764

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=88.91  E-value=0.085  Score=49.85  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=20.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHhccc
Q 010471          479 EVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       479 e~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      -...++||||+|||.+++.|+...
T Consensus        54 ~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          54 GSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCcchHHHHHHHHHHHh
Confidence            357899999999999999998754

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=87.61  E-value=0.12  Score=48.80  Aligned_cols=33  Identities=21%  Similarity=0.238  Sum_probs=23.9

Q ss_pred             cccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471          468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL  501 (510)
Q Consensus       468 L~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~  501 (510)
                      .+-+-...++| .+-++||+|||||.|++-|++-
T Consensus       114 ~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         114 AEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEETTEEEESE-EEEEECSSSSCHHHHHHHHHHH
T ss_pred             HHHhhcccCCc-eEEEECCCCccHHHHHHHHHHH
Confidence            33334555555 3445899999999999999874

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=85.43  E-value=0.16  Score=53.14  Aligned_cols=27  Identities=30%  Similarity=0.522  Sum_probs=24.5

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +..|.|-|-|+||||||+-.|.++++.
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999998875

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=85.36  E-value=0.2  Score=46.04  Aligned_cols=33  Identities=15%  Similarity=0.308  Sum_probs=27.3

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG  507 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG  507 (510)
                      ..++-.++-|.||.++||||++++|+.++ +..|
T Consensus       100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~l-g~~~  132 (267)
T d1u0ja_         100 KFGKRNTIWLFGPATTGKTNIAEAIAHTV-PFYG  132 (267)
T ss_dssp             CSTTCCEEEEECSTTSSHHHHHHHHHHHS-SCEE
T ss_pred             CCCccEEEEEEcCCCCCHHHHHHHHHHHh-cchh
Confidence            34666788999999999999999999988 4433

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=84.84  E-value=0.18  Score=44.13  Aligned_cols=30  Identities=17%  Similarity=0.304  Sum_probs=26.8

Q ss_pred             EeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      .+|+-..+.|+||.++|||+++..|+++..
T Consensus        49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             TCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            458889999999999999999999998863

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=84.57  E-value=0.17  Score=53.02  Aligned_cols=27  Identities=26%  Similarity=0.444  Sum_probs=24.4

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      ...|.+-|-|+||||||.-.|.++++.
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            457899999999999999999999876

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.96  E-value=0.14  Score=44.61  Aligned_cols=20  Identities=10%  Similarity=0.240  Sum_probs=17.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHH
Q 010471          477 ANEVVAIVGLSGSGKSTFVN  496 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~k  496 (510)
                      .|+.+.+++|+|||||+++-
T Consensus        39 ~~~~~il~apTGsGKT~~a~   58 (202)
T d2p6ra3          39 SGKNLLLAMPTAAGKTLLAE   58 (202)
T ss_dssp             TCSCEEEECSSHHHHHHHHH
T ss_pred             cCCCEEEEcCCCCchhHHHH
Confidence            57778899999999998753

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=83.95  E-value=0.3  Score=44.71  Aligned_cols=29  Identities=28%  Similarity=0.352  Sum_probs=23.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPS  505 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~  505 (510)
                      .+-++++||..-+|||||+|.|.|-....
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~~~~  139 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKNIAK  139 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC-
T ss_pred             CceEEEEEecCccchhhhhhhhhccceEE
Confidence            34569999999999999999999866533

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.85  E-value=0.12  Score=46.16  Aligned_cols=24  Identities=25%  Similarity=0.279  Sum_probs=19.6

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHh
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLL  499 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~  499 (510)
                      -.|+-+.+++|+|||||+..-+..
T Consensus        56 l~g~~~~i~apTGsGKT~~~~~~~   79 (237)
T d1gkub1          56 LRKESFAATAPTGVGKTSFGLAMS   79 (237)
T ss_dssp             HTTCCEECCCCBTSCSHHHHHHHH
T ss_pred             HCCCCEEEEecCCChHHHHHHHHH
Confidence            478999999999999998765443

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=82.94  E-value=0.21  Score=53.07  Aligned_cols=27  Identities=26%  Similarity=0.525  Sum_probs=24.5

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      ...|.+-|-|+||||||+-.|.++++.
T Consensus       121 ~~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         121 RENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             TCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            457899999999999999999999887

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=82.34  E-value=0.24  Score=51.92  Aligned_cols=27  Identities=19%  Similarity=0.380  Sum_probs=24.4

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      +..|.|-|-|+||||||+-.|.++++.
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            356899999999999999999999876

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=81.83  E-value=0.22  Score=52.80  Aligned_cols=27  Identities=26%  Similarity=0.380  Sum_probs=24.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471          477 ANEVVAIVGLSGSGKSTFVNLLLRLYE  503 (510)
Q Consensus       477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~  503 (510)
                      ..|.+-|-|+||||||.-.|.++++.-
T Consensus       120 ~nQ~IiisGESGaGKTe~~K~il~yL~  146 (789)
T d1kk8a2         120 ENQSCLITGESGAGKTENTKKVIMYLA  146 (789)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            468999999999999999999998763

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=81.49  E-value=0.29  Score=51.44  Aligned_cols=27  Identities=30%  Similarity=0.573  Sum_probs=24.5

Q ss_pred             eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471          476 EANEVVAIVGLSGSGKSTFVNLLLRLY  502 (510)
Q Consensus       476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y  502 (510)
                      ...|.+-|-|+||||||+-.|.++++.
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999999875

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=80.48  E-value=0.3  Score=47.25  Aligned_cols=20  Identities=30%  Similarity=0.519  Sum_probs=16.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 010471          481 VAIVGLSGSGKSTFVNLLLR  500 (510)
Q Consensus       481 vAIVG~SGSGKSTL~kLL~g  500 (510)
                      +.|||++|.|||+++.-|++
T Consensus        46 ~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHHH
Confidence            56999999999999975553