Citrus Sinensis ID: 010485

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------51
MLRLINSSGGSLRSSAMSPAAATTKMMSSSTVAVKNPRWSLCSSNNSGLFSGHVNNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFYYLFLLISKISINKYLEFRQLLGSLRSSSLTELNHDFWT
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccEEEEccccHHHHHHHHHHHccccccccccEEEEEccccccccccccccHHHHHHHHHHcEEEEcccccccHHHHHHHccccccccccccHHHHHccEEEEccEEEcccccccccccccEEEEEcccccccccccEEEccccEEEEEEEcccccccEEEEEEEEccccEEEEEEcccHHHHHHHHHHHHHHHHcccccEEcccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHccccccccEEEEcccccEEEEccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccEEEEEccccccHHHHHHcccccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccc
cccEEccccccccccccccccccccccccccHHHccccHHccccccHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcEEccccEEEEEccHHHHHHHHHHHHHcccccEEccEEEEEccHHHHHHcccHHHHHHHHHHHHHcEEEEcccccccHHHHHHHccccccccHHHHHHHHHccEEEEEEccccccccccccccccEEEEEEcccHHHHcEEEEEcccEEEEEEEEEccccccEEEEEEEEcccEEEEEEEEEHHHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHcHHHHHHccccEEEEEHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHcccccEEEEEEccccccEEEEccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccHHHEEEEccccccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHccccccc
mlrlinssggslrssamspaaaTTKMMSsstvavknprwslcssnnsglfsghvnnrvsfrnqlapamsfrcfasatgidrvkvqnpivemdgdEMTRIIWQMIKDKlifpyldldikyydlgilnrdatddkvTVESAEATLKYNVAIkcatitpdetrmkefglksmwrspngtirnilngtvfrepilcqniprivpgwkkpicigrhafgdqyratdtvikgpgklkmvfdpedgtgpveldvynfkgPGIALAMYNVDESIRAFAESSMslafskkwplylsTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVwacknydgdvqSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAhgtvtrhfrlhqkgqetstNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFYYLFLLISKISINKYLEFRQLLGSlrsssltelnhdfwt
mlrlinssggslrssaMSPAAATTKMMSSSTVAVKNPRWSLCSSNNSGLFSGHVNNRVSFRNQLAPAMSFRCFASatgidrvkvqnpivemdgDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESaeatlkynvaikcatitpdetrMKEFglksmwrspngtIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSlafskkwplYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGtvtrhfrlhqkgqetstnsIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFYYLFLLISKISINKYLEFRQLLgslrsssltelnhdfwt
MLRLINssggslrssamsPAAATTKMMSSSTVAVKNPRWSLCSSNNSGLFSGHVNNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTisilniylsisllnDALLSYSWLILLIDRQFYYLFLLISKISINKYLEFRQllgslrssslTELNHDFWT
**************************************WSLCSSNNSGLFSGHVNNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLH*******TNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFYYLFLLISKISINKYLEFRQLLGSL**************
***********************************************************************************VQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFYYLFLLISKISINKYLEFR********************
*********************************VKNPRWSLCSSNNSGLFSGHVNNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFYYLFLLISKISINKYLEFRQLLGSLRSSSLTELNHDFWT
************************************P********NSGLFSGHVNNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFYYLFLLISKISINKYLEFRQLLGSLRSSSL**LN*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLRLINSSGGSLRSSAMSPAAATTKMMSSSTVAVKNPRWSLCSSNNSGLFSGHVNNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFYYLFLLISKISINKYLEFRQLLGSLRSSSLTELNHDFWT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query509 2.2.26 [Sep-21-2011]
Q40345433 Isocitrate dehydrogenase N/A no 0.709 0.833 0.777 1e-175
P50217416 Isocitrate dehydrogenase N/A no 0.673 0.824 0.811 1e-173
P50218415 Isocitrate dehydrogenase N/A no 0.675 0.828 0.805 1e-172
Q06197413 Isocitrate dehydrogenase no no 0.673 0.830 0.813 1e-172
Q04467452 Isocitrate dehydrogenase yes no 0.673 0.758 0.708 1e-153
Q4R502452 Isocitrate dehydrogenase N/A no 0.673 0.758 0.705 1e-151
P48735452 Isocitrate dehydrogenase yes no 0.673 0.758 0.705 1e-151
P56574452 Isocitrate dehydrogenase yes no 0.673 0.758 0.696 1e-150
P54071452 Isocitrate dehydrogenase yes no 0.673 0.758 0.696 1e-150
P33198421 Isocitrate dehydrogenase yes no 0.693 0.838 0.682 1e-150
>sp|Q40345|IDHP_MEDSA Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1 Back     alignment and function desciption
 Score =  615 bits (1586), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 287/369 (77%), Positives = 320/369 (86%), Gaps = 8/369 (2%)

Query: 63  QLAPAMSFRCF-------ASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDL 115
           Q +P +SF  F        +  G  ++KV NPIVEMDGDEMTRIIW+ IKDKLIFP+++L
Sbjct: 1   QFSPNLSFSAFFPIITFTTATMGFQKIKVANPIVEMDGDEMTRIIWKYIKDKLIFPFVEL 60

Query: 116 DIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNG 175
           DIKY+DLG+  RD T+DKVTVESAEATLKYNVAIKCATITPDE R+KEFGLKSMWRSPNG
Sbjct: 61  DIKYFDLGLPYRDETNDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKSMWRSPNG 120

Query: 176 TIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFD 235
           TIRNILNGTVFREPI+C+NIPR++PGW KPICIGRHAFGDQYRATD+VIKGPGKLK+VF 
Sbjct: 121 TIRNILNGTVFREPIICKNIPRLIPGWTKPICIGRHAFGDQYRATDSVIKGPGKLKLVFV 180

Query: 236 PEDGTGPVELDVYNFKGP-GIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILK 294
           PE      +L+VYNF G  G+ALAMYN DESIR+FAE+SM++A  KKWPLYLSTKNTILK
Sbjct: 181 PEGQGETTDLEVYNFTGEGGVALAMYNTDESIRSFAEASMAVALEKKWPLYLSTKNTILK 240

Query: 295 KYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQ 354
           KYDGRFKDIFQ+VYE  W+ K+E   IWYEHRLIDDMVAYA+KSEGGYVWACKNYDGDVQ
Sbjct: 241 KYDGRFKDIFQEVYEAGWKSKYEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQ 300

Query: 355 SDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWT 414
           SD LAQGFGSLGLMTSVL+  DGKT+EAEAAHGTVTRHFR+HQKG ETSTNSIASIFAWT
Sbjct: 301 SDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWT 360

Query: 415 RGLEHRYML 423
           RGL HR  L
Sbjct: 361 RGLAHRAKL 369

Medicago sativa (taxid: 3879)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 2
>sp|P50217|IDHC_SOLTU Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1 Back     alignment and function description
>sp|P50218|IDHC_TOBAC Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|Q06197|IDHC_SOYBN Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2 Back     alignment and function description
>sp|Q04467|IDHP_BOVIN Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus GN=IDH2 PE=1 SV=2 Back     alignment and function description
>sp|Q4R502|IDHP_MACFA Isocitrate dehydrogenase [NADP], mitochondrial OS=Macaca fascicularis GN=IDH2 PE=2 SV=1 Back     alignment and function description
>sp|P48735|IDHP_HUMAN Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2 Back     alignment and function description
>sp|P56574|IDHP_RAT Isocitrate dehydrogenase [NADP], mitochondrial OS=Rattus norvegicus GN=Idh2 PE=1 SV=2 Back     alignment and function description
>sp|P54071|IDHP_MOUSE Isocitrate dehydrogenase [NADP], mitochondrial OS=Mus musculus GN=Idh2 PE=1 SV=3 Back     alignment and function description
>sp|P33198|IDHP_PIG Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus scrofa GN=IDH2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query509
296087635540 unnamed protein product [Vitis vinifera] 0.815 0.768 0.813 0.0
359488679486 PREDICTED: isocitrate dehydrogenase [NAD 0.856 0.897 0.782 0.0
31339162485 NADP-specific isocitrate dehydrogenase [ 0.807 0.847 0.812 0.0
297811591492 hypothetical protein ARALYDRAFT_488300 [ 0.742 0.768 0.868 0.0
357495781482 Isocitrate dehydrogenase-like protein [M 0.781 0.825 0.838 0.0
22326811485 isocitrate dehydrogenase [Arabidopsis th 0.742 0.779 0.865 0.0
7573308465 isocitrate dehydrogenase-like protein [A 0.738 0.808 0.862 0.0
356513947470 PREDICTED: isocitrate dehydrogenase [NAD 0.760 0.823 0.832 0.0
5738864470 isocitrate dehydrogenase (NAD+) [Solanum 0.807 0.874 0.789 0.0
3021512482 isocitrate dehydrogenase (NADP+) [Nicoti 0.726 0.767 0.84 0.0
>gi|296087635|emb|CBI34891.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/423 (81%), Positives = 374/423 (88%), Gaps = 8/423 (1%)

Query: 1   MLRLINSSGGSLRSSAMSPAAATTKMMSSSTVAVKNPRWSLCSSNNSGLFSGHVNNRVSF 60
           MLR++      LR  AMS AA      SSS++A+KNP  S+  S++   F+G +    S 
Sbjct: 55  MLRVLRPK---LRFGAMSGAAI---FPSSSSLALKNPNLSI--SSDQRFFNGILFKNGSI 106

Query: 61  RNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYY 120
            +   P  S RCFASA   DRV+VQNPIVEMDGDEM RI+W+MIKDKLIFPYLDLDI+Y+
Sbjct: 107 LHDRFPNASLRCFASAATFDRVRVQNPIVEMDGDEMARIMWRMIKDKLIFPYLDLDIRYF 166

Query: 121 DLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNI 180
           DLGILNRDATDDKVTVESAEATLKYNVA+KCATITPDE R+KEFGLKSMWRSPNGTIRNI
Sbjct: 167 DLGILNRDATDDKVTVESAEATLKYNVAVKCATITPDEARVKEFGLKSMWRSPNGTIRNI 226

Query: 181 LNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGT 240
           LNGTVFREPILCQN+PRIVPGWKKPICIGRHAFGDQYRATDTV++GPGKLK+VF PE+G 
Sbjct: 227 LNGTVFREPILCQNVPRIVPGWKKPICIGRHAFGDQYRATDTVVEGPGKLKLVFAPENGD 286

Query: 241 GPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRF 300
            PVEL+VY+FKGPGIALAMYNVDESIRAFAESSMSLAF+KKWPLYLSTKNTILKKYDGRF
Sbjct: 287 PPVELNVYDFKGPGIALAMYNVDESIRAFAESSMSLAFAKKWPLYLSTKNTILKKYDGRF 346

Query: 301 KDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQ 360
           KDIFQ VYEE W+QKFEEHSIWYEHRLIDDMVAYA+KS+GGYVWACKNYDGDVQSDLLAQ
Sbjct: 347 KDIFQDVYEENWKQKFEEHSIWYEHRLIDDMVAYALKSDGGYVWACKNYDGDVQSDLLAQ 406

Query: 361 GFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHR 420
           GFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFR +QKG ETSTNSIASIFAWTRGLEHR
Sbjct: 407 GFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRQYQKGLETSTNSIASIFAWTRGLEHR 466

Query: 421 YML 423
             L
Sbjct: 467 AKL 469

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359488679|ref|XP_002276200.2| PREDICTED: isocitrate dehydrogenase [NADP]-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|31339162|dbj|BAC77065.1| NADP-specific isocitrate dehydrogenase [Lupinus albus] Back     alignment and taxonomy information
>gi|297811591|ref|XP_002873679.1| hypothetical protein ARALYDRAFT_488300 [Arabidopsis lyrata subsp. lyrata] gi|297319516|gb|EFH49938.1| hypothetical protein ARALYDRAFT_488300 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357495781|ref|XP_003618179.1| Isocitrate dehydrogenase-like protein [Medicago truncatula] gi|355493194|gb|AES74397.1| Isocitrate dehydrogenase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|22326811|ref|NP_196963.2| isocitrate dehydrogenase [Arabidopsis thaliana] gi|20466434|gb|AAM20534.1| isocitrate dehydrogenase-like protein [Arabidopsis thaliana] gi|23198136|gb|AAN15595.1| isocitrate dehydrogenase-like protein [Arabidopsis thaliana] gi|332004668|gb|AED92051.1| isocitrate dehydrogenase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|7573308|emb|CAB87626.1| isocitrate dehydrogenase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356513947|ref|XP_003525669.1| PREDICTED: isocitrate dehydrogenase [NADP], chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|5738864|emb|CAA63220.1| isocitrate dehydrogenase (NAD+) [Solanum tuberosum] Back     alignment and taxonomy information
>gi|3021512|emb|CAA65503.1| isocitrate dehydrogenase (NADP+) [Nicotiana tabacum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query509
TAIR|locus:2222672485 AT5G14590 [Arabidopsis thalian 0.791 0.830 0.831 9.7e-183
TAIR|locus:2020128416 ICDH "isocitrate dehydrogenase 0.675 0.826 0.787 5.1e-154
TAIR|locus:2009759410 cICDH "cytosolic NADP+-depende 0.671 0.834 0.785 1.1e-151
UNIPROTKB|Q04467452 IDH2 "Isocitrate dehydrogenase 0.667 0.752 0.711 1.9e-138
UNIPROTKB|F1PAM3422 IDH2 "Isocitrate dehydrogenase 0.667 0.805 0.705 1.3e-137
UNIPROTKB|P48735452 IDH2 "Isocitrate dehydrogenase 0.667 0.752 0.708 3.6e-137
UNIPROTKB|Q4R502452 IDH2 "Isocitrate dehydrogenase 0.667 0.752 0.708 3.6e-137
RGD|1597139452 Idh2 "isocitrate dehydrogenase 0.667 0.752 0.7 9.5e-137
MGI|MGI:96414452 Idh2 "isocitrate dehydrogenase 0.667 0.752 0.7 2.5e-136
UNIPROTKB|F1SK00413 IDH2 "Isocitrate dehydrogenase 0.667 0.823 0.7 4.1e-136
TAIR|locus:2222672 AT5G14590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1773 (629.2 bits), Expect = 9.7e-183, P = 9.7e-183
 Identities = 336/404 (83%), Positives = 365/404 (90%)

Query:    21 AATTKMMSSSTVAVKNPRWSLCSSNNSGLFS-GHVNNRVSFRNQLAPAMSFRCFASATGI 79
             A+ T M+SSST A  +  +      +SG+FS G   NRV+F  Q   A + RCFAS+ G 
Sbjct:    14 ASLTAMLSSSTSAGLSSSFVSSRFLSSGIFSSGASRNRVTFPVQFHRASAVRCFASSGGS 73

Query:    80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESA 139
             DR++VQNPIVEMDGDEMTR+IW MIK+KLI PYLDLDIKY+DLGILNRDATDDKVTVESA
Sbjct:    74 DRIQVQNPIVEMDGDEMTRVIWSMIKEKLILPYLDLDIKYFDLGILNRDATDDKVTVESA 133

Query:   140 EATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV 199
             EA LKYNVAIKCATITPDE R+KEFGLKSMWRSPNGTIRNIL+GTVFREPI+C NIPR+V
Sbjct:   134 EAALKYNVAIKCATITPDEGRVKEFGLKSMWRSPNGTIRNILDGTVFREPIMCSNIPRLV 193

Query:   200 PGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAM 259
             PGW+KPICIGRHAFGDQYRATDTVIKGPGKLKMVF PEDG  PVELDVY+FKGPG+ALAM
Sbjct:   194 PGWEKPICIGRHAFGDQYRATDTVIKGPGKLKMVFVPEDGNAPVELDVYDFKGPGVALAM 253

Query:   260 YNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319
             YNVDESIRAFAESSM++A +KKWPLYLSTKNTILKKYDGRFKDIFQ+VYE  W+QKFEEH
Sbjct:   254 YNVDESIRAFAESSMAMALTKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKQKFEEH 313

Query:   320 SIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKT 379
             SIWYEHRLIDDMVAYA+KSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLS+DGKT
Sbjct:   314 SIWYEHRLIDDMVAYAVKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSADGKT 373

Query:   380 LEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYML 423
             LE+EAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHR  L
Sbjct:   374 LESEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKL 417
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0004450 "isocitrate dehydrogenase (NADP+) activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006102 "isocitrate metabolic process" evidence=IEA
GO:0008152 "metabolic process" evidence=ISS
GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA
GO:0051287 "NAD binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
TAIR|locus:2020128 ICDH "isocitrate dehydrogenase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009759 cICDH "cytosolic NADP+-dependent isocitrate dehydrogenase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q04467 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PAM3 IDH2 "Isocitrate dehydrogenase [NADP]" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P48735 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R502 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
RGD|1597139 Idh2 "isocitrate dehydrogenase 2 (NADP+), mitochondrial" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:96414 Idh2 "isocitrate dehydrogenase 2 (NADP+), mitochondrial" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SK00 IDH2 "Isocitrate dehydrogenase [NADP]" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q4R502IDHP_MACFA1, ., 1, ., 1, ., 4, 20.70550.67380.7588N/Ano
Q04467IDHP_BOVIN1, ., 1, ., 1, ., 4, 20.70840.67380.7588yesno
P65097IDH_MYCTU1, ., 1, ., 1, ., 4, 20.64820.67380.8386yesno
P65098IDH_MYCBO1, ., 1, ., 1, ., 4, 20.64820.67380.8386yesno
P48735IDHP_HUMAN1, ., 1, ., 1, ., 4, 20.70550.67380.7588yesno
Q75JR2IDHP_DICDI1, ., 1, ., 1, ., 4, 20.67630.66990.7967yesno
P54071IDHP_MOUSE1, ., 1, ., 1, ., 4, 20.69670.67380.7588yesno
P21954IDHP_YEAST1, ., 1, ., 1, ., 4, 20.67220.69350.8247yesno
P33198IDHP_PIG1, ., 1, ., 1, ., 4, 20.68270.69350.8384yesno
Q40345IDHP_MEDSA1, ., 1, ., 1, ., 4, 20.77770.70920.8337N/Ano
P50217IDHC_SOLTU1, ., 1, ., 1, ., 4, 20.81100.67380.8245N/Ano
P50218IDHC_TOBAC1, ., 1, ., 1, ., 4, 20.80570.67580.8289N/Ano
Q9Z2K9IDHC_MICME1, ., 1, ., 1, ., 4, 20.70320.66010.8115N/Ano
Q9Z2K8IDHC_MICOH1, ., 1, ., 1, ., 4, 20.70020.66010.8115N/Ano
P79089IDHP_ASPNG1, ., 1, ., 1, ., 4, 20.69250.68170.6967yesno
P56574IDHP_RAT1, ., 1, ., 1, ., 4, 20.69670.67380.7588yesno
O14254IDHP_SCHPO1, ., 1, ., 1, ., 4, 20.65810.69150.8018yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.10.963
4th Layer1.1.1.420.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query509
PLN03065483 PLN03065, PLN03065, isocitrate dehydrogenase (NADP 0.0
PLN00103410 PLN00103, PLN00103, isocitrate dehydrogenase (NADP 0.0
PTZ00435413 PTZ00435, PTZ00435, isocitrate dehydrogenase; Prov 0.0
PRK08299402 PRK08299, PRK08299, isocitrate dehydrogenase; Vali 0.0
TIGR00127409 TIGR00127, nadp_idh_euk, isocitrate dehydrogenase, 0.0
COG0538407 COG0538, Icd, Isocitrate dehydrogenases [Energy pr 1e-148
pfam00180349 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehy 1e-82
PLN00096393 PLN00096, PLN00096, isocitrate dehydrogenase (NADP 3e-45
COG0473348 COG0473, LeuB, Isocitrate/isopropylmalate dehydrog 1e-05
PLN00118372 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+ 2e-05
TIGR00169346 TIGR00169, leuB, 3-isopropylmalate dehydrogenase 3e-05
TIGR02088322 TIGR02088, LEU3_arch, isopropylmalate/isohomocitra 9e-05
TIGR02924473 TIGR02924, ICDH_alpha, isocitrate dehydrogenase 2e-04
>gnl|CDD|178617 PLN03065, PLN03065, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information 
 Score =  814 bits (2103), Expect = 0.0
 Identities = 352/413 (85%), Positives = 373/413 (90%), Gaps = 5/413 (1%)

Query: 12  LRSSAMSPAAATTKMMSSSTVAVKNPRWSLCSSNNSGLFSGHVN-NRVSFRNQLAPAMSF 70
           LR  A  PA A   M SSS+ A  NP   L S+   G+F+G ++ NR +F  Q   A S 
Sbjct: 7   LRLLAYRPALAL--MPSSSSSAAANP--LLASNPCRGIFNGGLSKNRRAFHVQFHRASSV 62

Query: 71  RCFASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDAT 130
           RCFASA   DR+KVQNPIVEMDGDEMTR+IWQMIKDKLIFPYLDLDIKY+DLGILNRDAT
Sbjct: 63  RCFASAAAADRIKVQNPIVEMDGDEMTRVIWQMIKDKLIFPYLDLDIKYFDLGILNRDAT 122

Query: 131 DDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPI 190
           DDKVTVESAEATLKYNVAIKCATITPDE R+KEFGLKSMWRSPNGTIRNILNGTVFREPI
Sbjct: 123 DDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKSMWRSPNGTIRNILNGTVFREPI 182

Query: 191 LCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNF 250
           LC+NIPR+VPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVF PEDG  PVELDVY+F
Sbjct: 183 LCKNIPRLVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFVPEDGNAPVELDVYDF 242

Query: 251 KGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEE 310
           KGPG+ALAMYNVDESIRAFAESSM++A  KKWPLYLSTKNTILKKYDGRFKDIFQ+VYEE
Sbjct: 243 KGPGVALAMYNVDESIRAFAESSMAMALQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEE 302

Query: 311 RWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTS 370
           +W+QKFEEHSIWYEHRLIDDMVAYA+KSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTS
Sbjct: 303 QWKQKFEEHSIWYEHRLIDDMVAYAVKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTS 362

Query: 371 VLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYML 423
           VLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHR  L
Sbjct: 363 VLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKL 415

Length = 483
>gnl|CDD|177720 PLN00103, PLN00103, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>gnl|CDD|240417 PTZ00435, PTZ00435, isocitrate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|236226 PRK08299, PRK08299, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|129233 TIGR00127, nadp_idh_euk, isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>gnl|CDD|223612 COG0538, Icd, Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|215773 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase Back     alignment and domain information
>gnl|CDD|177715 PLN00096, PLN00096, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>gnl|CDD|223549 COG0473, LeuB, Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|215062 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>gnl|CDD|232853 TIGR00169, leuB, 3-isopropylmalate dehydrogenase Back     alignment and domain information
>gnl|CDD|233717 TIGR02088, LEU3_arch, isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>gnl|CDD|234062 TIGR02924, ICDH_alpha, isocitrate dehydrogenase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 509
PLN03065483 isocitrate dehydrogenase (NADP+); Provisional 100.0
PTZ00435413 isocitrate dehydrogenase; Provisional 100.0
PRK08299402 isocitrate dehydrogenase; Validated 100.0
COG0473348 LeuB Isocitrate/isopropylmalate dehydrogenase [Ami 100.0
TIGR00127409 nadp_idh_euk isocitrate dehydrogenase, NADP-depend 100.0
PLN00096393 isocitrate dehydrogenase (NADP+); Provisional 100.0
PLN00118372 isocitrate dehydrogenase (NAD+) 100.0
PRK08997334 isocitrate dehydrogenase; Provisional 100.0
PRK14025330 multifunctional 3-isopropylmalate dehydrogenase/D- 100.0
PLN00103410 isocitrate dehydrogenase (NADP+); Provisional 100.0
PRK08194352 tartrate dehydrogenase; Provisional 100.0
TIGR02089352 TTC tartrate dehydrogenase. Tartrate dehydrogenase 100.0
PRK06451412 isocitrate dehydrogenase; Validated 100.0
PRK07006409 isocitrate dehydrogenase; Reviewed 100.0
PLN02329409 3-isopropylmalate dehydrogenase 100.0
PRK09222 482 isocitrate dehydrogenase; Validated 100.0
TIGR00183416 prok_nadp_idh isocitrate dehydrogenase, NADP-depen 100.0
TIGR02924 473 ICDH_alpha isocitrate dehydrogenase. This family o 100.0
TIGR00175333 mito_nad_idh isocitrate dehydrogenase, NAD-depende 100.0
PLN00123360 isocitrate dehydrogenase (NAD+) 100.0
TIGR00169349 leuB 3-isopropylmalate dehydrogenase. This model w 100.0
KOG1526422 consensus NADP-dependent isocitrate dehydrogenase 100.0
PRK00772358 3-isopropylmalate dehydrogenase; Provisional 100.0
PRK03437344 3-isopropylmalate dehydrogenase; Provisional 100.0
TIGR02088322 LEU3_arch isopropylmalate/isohomocitrate dehydroge 100.0
KOG0785365 consensus Isocitrate dehydrogenase, alpha subunit 100.0
PRK07362474 isocitrate dehydrogenase; Validated 100.0
COG0538407 Icd Isocitrate dehydrogenases [Energy production a 100.0
PF00180348 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; 100.0
KOG0784375 consensus Isocitrate dehydrogenase, gamma subunit 100.0
KOG0786363 consensus 3-isopropylmalate dehydrogenase [Amino a 100.0
PF03971735 IDH: Monomeric isocitrate dehydrogenase; InterPro: 96.73
TIGR00178741 monomer_idh isocitrate dehydrogenase, NADP-depende 96.27
COG2838744 Icd Monomeric isocitrate dehydrogenase [Energy pro 93.18
PF04166298 PdxA: Pyridoxal phosphate biosynthetic protein Pdx 92.78
PRK00232332 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 91.64
PRK03371326 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 91.48
PRK03743332 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 91.2
PRK01909329 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 91.08
PRK03946307 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 91.06
PRK05312336 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 90.78
COG1995332 PdxA Pyridoxal phosphate biosynthesis protein [Coe 90.77
PRK02746345 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 90.69
TIGR00557320 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. 90.45
TIGR00127409 nadp_idh_euk isocitrate dehydrogenase, NADP-depend 86.86
PLN00103410 isocitrate dehydrogenase (NADP+); Provisional 80.48
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.1e-120  Score=960.74  Aligned_cols=462  Identities=76%  Similarity=1.167  Sum_probs=416.8

Q ss_pred             hhhhhhccccccccccCCCcccccCCCCccccccc-cchhhhhccccchhhhhhhcccccccceeccccEEEEcCCCcHH
Q 010485           20 AAATTKMMSSSTVAVKNPRWSLCSSNNSGLFSGHV-NNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTR   98 (509)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~~I~vLpGDGIGp   98 (509)
                      ..+...|+++++++..||.++..+.+  +.|++.+ .+...+......+..-|++++.....||+|.+||++|+||||||
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~piv~~~GDem~r   90 (483)
T PLN03065         13 RPALALMPSSSSSAAANPLLASNPCR--GIFNGGLSKNRRAFHVQFHRASSVRCFASAAAADRIKVQNPIVEMDGDEMTR   90 (483)
T ss_pred             chhhhhcccccchhhcCcccccCchh--hhccccccccccccccccccccchhhhcchhhhccccccCCeEEecCCcchH
Confidence            33456788888999999999988865  4555443 44444444554555667775554357999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchhhhhcccccCCCCchhHh
Q 010485           99 IIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIR  178 (509)
Q Consensus        99 EI~~~~~~~l~~~~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~~~~e~~L~~~~~S~n~~LR  178 (509)
                      |||+.++++|+.++++++|+|+|+|.+++++||+++|+|++++||++||+||||++||+++|++||+|+++|+|||++||
T Consensus        91 ~i~~~i~~~li~p~~di~~~~~dlG~e~rd~Tgd~v~~da~~aikk~~v~lKgAt~TP~~~rv~e~~lk~~w~SpN~tiR  170 (483)
T PLN03065         91 VIWQMIKDKLIFPYLDLDIKYFDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKSMWRSPNGTIR  170 (483)
T ss_pred             HHHHHHHHHHhcCCCCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCccccccccccccccCCccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCceEEeeccccCCCCCCCCCCCCCEEEEecccCccccccceeecCCCceeeeecCCCCCCceeeeeeccCCCceeee
Q 010485          179 NILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALA  258 (509)
Q Consensus       179 k~LdLyanvRPi~~k~lp~l~~~~~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~g~~~~~~~v~~~~~~~v~~~  258 (509)
                      ++||||+|+|||.++++|++.|+|+.||+|.|||+||+|.++|+.+.++|++++.|++++++......+++|+++++++.
T Consensus       171 ~~Ldl~v~rrPi~~~ni~r~vpg~~~pI~i~Rha~gd~Y~~iD~vi~~~g~~~~~~~rEnte~~~e~~v~~f~~~gva~~  250 (483)
T PLN03065        171 NILNGTVFREPILCKNIPRLVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFVPEDGNAPVELDVYDFKGPGVALA  250 (483)
T ss_pred             HHcCCeEEeeeeeccccCccCCCCCCCeEEeecccCCCcCceEEEEecCCeeEEEeecCCCCCcceeEeeccCCCCeEEE
Confidence            99999999999988999999999999999999999999999999999999999999999886666777888998899988


Q ss_pred             eccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHHHhhhhccCCCCeeEeeehHHHHHHHHhhC
Q 010485          259 MYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKS  338 (509)
Q Consensus       259 ~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~PdI~~e~~lVDa~amqlVk~  338 (509)
                      ++||+++||||||+||+||++|+++||++||+||||.|||+|+++|+||++++||++|.+.+|+|+|+|||+||||||++
T Consensus       251 ~~nT~~sieriAr~AF~yA~~rk~~Vt~v~KaNILK~~DGlF~dif~eVa~~eyk~~yp~~~I~~e~~lIDa~~~~lvk~  330 (483)
T PLN03065        251 MYNVDESIRAFAESSMAMALQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEQWKQKFEEHSIWYEHRLIDDMVAYAVKS  330 (483)
T ss_pred             EEECHHHHHHHHHHHHHHHHHcCCCEEEEeCCCcccchHHHHHHHHHHHHHHhhhhcCCCCCceEEeeeHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999989999995558999999999999999999


Q ss_pred             CCccEEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCCcccccccCCCCCcChhHHHHHHHHHHH
Q 010485          339 EGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLE  418 (509)
Q Consensus       339 P~~FVIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd~~~~~IAGk~i~ANPiA~IlS~amML~  418 (509)
                      |++|||||+|||||||||++|+++|||||+||+|+|+++++++|||+|||||||||+|||||+++|||+|+||||+|||+
T Consensus       331 P~~FViv~~NlfGDIlSDl~A~l~GsLGl~pSanig~dg~~~~fEa~HGSapd~~~~~iaGk~t~ANPiA~IlA~ammL~  410 (483)
T PLN03065        331 EGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLE  410 (483)
T ss_pred             CCCcEEEeeccchhhhhHHHHHhcCchhhcccceeCCCCceEEEecCcCcCccccchhccCCCCCcChHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998745799999999999999999999977999999999999999


Q ss_pred             HhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhccccccCHHHHHHHHHHHhhh
Q 010485          419 HRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFYYLFLLISKISINKYL  486 (509)
Q Consensus       419 hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~~~~~T~ef~~~Ii~~~~~  486 (509)
                      |+|++|+ |++|.++|++||+||.++++ +|.+|+|||....|.+ ..+.+.++|+||+|+|+++|..
T Consensus       411 hlg~ld~-~~~l~~~A~~Le~Av~~tie-~G~~T~DLg~~~~G~~-~~~~~~~~T~ef~daV~~~L~~  475 (483)
T PLN03065        411 HRAKLDK-NEELLDFVHKLESACIETVE-SGKMTKDLAILIHGPK-VSREFYLNTEEFIDAVAQTLAT  475 (483)
T ss_pred             HhCCCCc-cchHHHHHHHHHHHHHHHHH-cCCcccccccccCCCc-ccCCCCcCHHHHHHHHHHHHHH
Confidence            9999998 89999999999999999999 9999999972211100 0012347999999999999964

>PTZ00435 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>PRK08299 isocitrate dehydrogenase; Validated Back     alignment and domain information
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>PLN00118 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>PRK08997 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>PRK08194 tartrate dehydrogenase; Provisional Back     alignment and domain information
>TIGR02089 TTC tartrate dehydrogenase Back     alignment and domain information
>PRK06451 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PRK07006 isocitrate dehydrogenase; Reviewed Back     alignment and domain information
>PLN02329 3-isopropylmalate dehydrogenase Back     alignment and domain information
>PRK09222 isocitrate dehydrogenase; Validated Back     alignment and domain information
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type Back     alignment and domain information
>TIGR02924 ICDH_alpha isocitrate dehydrogenase Back     alignment and domain information
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type Back     alignment and domain information
>PLN00123 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>TIGR00169 leuB 3-isopropylmalate dehydrogenase Back     alignment and domain information
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>PRK00772 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>PRK03437 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>PRK07362 isocitrate dehydrogenase; Validated Back     alignment and domain information
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate Back     alignment and domain information
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0786 consensus 3-isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1 Back     alignment and domain information
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type Back     alignment and domain information
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) Back     alignment and domain information
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed Back     alignment and domain information
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional Back     alignment and domain information
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated Back     alignment and domain information
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated Back     alignment and domain information
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism] Back     alignment and domain information
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase Back     alignment and domain information
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query509
1lwd_A413 Crystal Structure Of Nadp-Dependent Isocitrate Dehy 1e-150
1t09_A414 Crystal Structure Of Human Cytosolic Nadp(+)-Depend 1e-148
3mas_B419 Crystal Structure Of Heterodimeric R132h Mutant Of 1e-148
3inm_A425 Crystal Structure Of Human Cytosolic Nadp(+)-Depend 1e-148
3map_A422 Crystal Structure Of Homodimeric R132h Mutant Of Hu 1e-148
2cmj_A410 Crystal Structure Of Mouse Cytosolic Isocitrate Deh 1e-147
3us8_A427 Crystal Structure Of An Isocitrate Dehydrogenase Fr 1e-145
2qfv_A427 Crystal Structure Of Saccharomyces Cerevesiae Mitoc 1e-144
4hcx_A409 Structure Of Icdh-1 From M.tuberculosis Complexed W 1e-138
4aoy_A402 Open Ctidh. The Complex Structures Of Isocitrate De 1e-113
1zor_A399 Isocitrate Dehydrogenase From The Hyperthermophile 1e-107
2uxq_A402 Isocitrate Dehydrogenase From The Psychrophilic Bac 3e-95
1dr0_A346 Structure Of Modified 3-isopropylmalate Dehydrogena 4e-04
1xac_A345 Chimera Isopropylmalate Dehydrogenase Between Bacil 4e-04
2y3z_A359 Structure Of Isopropylmalate Dehydrogenase From The 4e-04
1dpz_A349 Stucture Of Modified 3-Isopropylmalate Dehydrogenas 4e-04
1dr8_A344 Structure Of Modified 3-Isopropylmalate Dehydrogena 4e-04
1osj_A345 Structure Of 3-isopropylmalate Dehydrogenase Length 4e-04
1osi_A345 Structure Of 3-Isopropylmalate Dehydrogenase Length 4e-04
1ipd_A345 Three-Dimensional Structure Of A Highly Thermostabl 4e-04
1gc8_A345 The Crystal Structure Of Thermus Thermophilus 3-Iso 4e-04
1g2u_A345 The Structure Of The Mutant, A172v, Of 3-Isopropylm 4e-04
1gc9_A345 The Crystal Structure Of Thermus Thermophilus 3-Iso 4e-04
1idm_A343 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chime 5e-04
>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate Dehydrogenase From Porcine Heart Mitochondria Length = 413 Back     alignment and structure 
Iteration: 1

 Score =  528 bits (1360), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 239/343 (69%), Positives = 286/343 (83%)
Query: 81  RVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAE 140
           R+KV  P+VEMDGDEMTRIIWQ IK+KLI P++D+ +KY+DLG+ NRD T+D+VT++SA 
Sbjct: 4   RIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSAL 63
Query: 141 ATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP 200
           AT KY+VA+KCATITPDE R++EF LK MW+SPNGTIRNIL GTVFREPI+C+NIPR+VP
Sbjct: 64  ATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVP 123
Query: 201 GWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMY 260
           GW KPI IGRHA GDQY+ATD V+   G  K+VF P+DG+   + +VYNF   G+ + MY
Sbjct: 124 GWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAGGVGMGMY 183
Query: 261 NVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS 320
           N DESI  FA S    A  KKWPLY+STKNTILK YDGRFKDIFQ+++E+ ++  F+++ 
Sbjct: 184 NTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYK 243
Query: 321 IWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTL 380
           IWYEHRLIDDMVA  +KS GG+VWACKNYDGDVQSD+LAQGFGSLGLMTSVL+  DGKT+
Sbjct: 244 IWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTI 303
Query: 381 EAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYML 423
           EAEAAHGTVTRH+R HQKG+ TSTN IASIFAWTRGLEHR  L
Sbjct: 304 EAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKL 346
>pdb|1T09|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex Nadp Length = 414 Back     alignment and structure
>pdb|3MAS|B Chain B, Crystal Structure Of Heterodimeric R132h Mutant Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp And Isocitrate Length = 419 Back     alignment and structure
>pdb|3INM|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase R132h Mutant In Complex With Nadph, Alpha-Ketoglutarate And Calcium(2+) Length = 425 Back     alignment and structure
>pdb|3MAP|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp And Isocitrate Length = 422 Back     alignment and structure
>pdb|2CMJ|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate Dehydrogenase Length = 410 Back     alignment and structure
>pdb|3US8|A Chain A, Crystal Structure Of An Isocitrate Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 427 Back     alignment and structure
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp(+) Length = 427 Back     alignment and structure
>pdb|4HCX|A Chain A, Structure Of Icdh-1 From M.tuberculosis Complexed With Nadph & Mn2+ Length = 409 Back     alignment and structure
>pdb|4AOY|A Chain A, Open Ctidh. The Complex Structures Of Isocitrate Dehydrogenase From Clostridium Thermocellum And Desulfotalea Psychrophila, Support A New Active Site Locking Mechanism Length = 402 Back     alignment and structure
>pdb|1ZOR|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile Thermotoga Maritima Length = 399 Back     alignment and structure
>pdb|2UXQ|A Chain A, Isocitrate Dehydrogenase From The Psychrophilic Bacterium Desulfotalea Psychrophila: Biochemical Properties And Crystal Structure Analysis Length = 402 Back     alignment and structure
>pdb|1DR0|A Chain A, Structure Of Modified 3-isopropylmalate Dehydrogenase At The C- Terminus, Hd708 Length = 346 Back     alignment and structure
>pdb|1XAC|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus Subtilis (M) And Thermus Thermophilus (T) From N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated At S82r. Low Temperature (100k) Structure. Length = 345 Back     alignment and structure
>pdb|2Y3Z|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus Thermophilus - Apo Enzyme Length = 359 Back     alignment and structure
>pdb|1DPZ|A Chain A, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At The C- Terminus, Hd711 Length = 349 Back     alignment and structure
>pdb|1DR8|A Chain A, Structure Of Modified 3-Isopropylmalate Dehydrogenase At The C- Terminus, Hd177 Length = 344 Back     alignment and structure
>pdb|1OSJ|A Chain A, Structure Of 3-isopropylmalate Dehydrogenase Length = 345 Back     alignment and structure
>pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase Length = 345 Back     alignment and structure
>pdb|1IPD|A Chain A, Three-Dimensional Structure Of A Highly Thermostable Enzyme, 3- Isopropylmalate Dehydrogenase Of Thermus Thermophilus At 2.2 Angstroms Resolution Length = 345 Back     alignment and structure
>pdb|1GC8|A Chain A, The Crystal Structure Of Thermus Thermophilus 3-Isopropylmalate Dehydrogenase Mutated At 172th From Ala To Phe Length = 345 Back     alignment and structure
>pdb|1G2U|A Chain A, The Structure Of The Mutant, A172v, Of 3-Isopropylmalate Dehydrogenase From Thermus Thermophilus Hb8 : Its Thermostability And Structure Length = 345 Back     alignment and structure
>pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermophilus 3-Isopropylmalate Dehydrogenase Mutated At 172th From Ala To Gly Length = 345 Back     alignment and structure
>pdb|1IDM|A Chain A, 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera Length = 343 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query509
2qfy_A427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 1e-173
1lwd_A413 Isocitrate dehydrogenase; tricarboxylic acid cycle 1e-173
3us8_A427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 1e-171
2uxq_A402 Isocitrate dehydrogenase native; psychrophilic, co 1e-168
4aoy_A402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 1e-167
1zor_A399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 1e-161
1itw_A741 Isocitrate dehydrogenase; greece KEY motif, oxidor 2e-16
2b0t_A738 NADP isocitrate dehydrogenase; monomeric, IDH, oxi 1e-14
2b0t_A 738 NADP isocitrate dehydrogenase; monomeric, IDH, oxi 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-04
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 2e-07
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 6e-07
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 8e-07
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 1e-06
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 1e-06
2d1c_A496 Isocitrate dehydrogenase; structural genomics, NPP 3e-06
1tyo_A435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 3e-06
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 4e-06
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 1e-05
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 3e-05
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 5e-05
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 7e-05
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Length = 427 Back     alignment and structure
 Score =  493 bits (1271), Expect = e-173
 Identities = 237/354 (66%), Positives = 282/354 (79%), Gaps = 2/354 (0%)

Query: 69  SFRCFASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRD 128
                       ++KV+ P+VE+DGDEMTRIIW  IK KLI PYLD+D+KYYDL + +RD
Sbjct: 6   HHAMGIPGHAFSKIKVKQPVVELDGDEMTRIIWDKIKKKLILPYLDVDLKYYDLSVESRD 65

Query: 129 ATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFRE 188
           AT DK+T ++AEA  KY V IKCATITPDE R+KEF L  MW+SPNGTIRNIL GTVFRE
Sbjct: 66  ATSDKITQDAAEAIKKYGVGIKCATITPDEARVKEFNLHKMWKSPNGTIRNILGGTVFRE 125

Query: 189 PILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTG--PVELD 246
           PI+   IPR+VP W+KPI IGRHA GDQY+ATDT+I GPG L++V+ P D T   P  L 
Sbjct: 126 PIVIPRIPRLVPRWEKPIIIGRHAHGDQYKATDTLIPGPGSLELVYKPSDPTTAQPQTLK 185

Query: 247 VYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQ 306
           VY++KG G+A+AMYN DESI  FA SS  LA  KK  L+LSTKNTILKKYDGRFKDIFQ+
Sbjct: 186 VYDYKGSGVAMAMYNTDESIEGFAHSSFKLAIDKKLNLFLSTKNTILKKYDGRFKDIFQE 245

Query: 307 VYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLG 366
           VYE +++ KFE+  I YEHRLIDDMVA  IKS+GG++ A KNYDGDVQSD++AQGFGSLG
Sbjct: 246 VYEAQYKSKFEQLGIHYEHRLIDDMVAQMIKSKGGFIMALKNYDGDVQSDIVAQGFGSLG 305

Query: 367 LMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHR 420
           LMTS+L++ DGKT E+EAAHGTVTRH+R +QKG+ETSTNSIASIFAW+RGL  R
Sbjct: 306 LMTSILVTPDGKTFESEAAHGTVTRHYRKYQKGEETSTNSIASIFAWSRGLLKR 359
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Length = 413 Back     alignment and structure
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Length = 427 Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Length = 402 Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Length = 402 Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Length = 399 Back     alignment and structure
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A* Length = 741 Back     alignment and structure
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A* Length = 738 Back     alignment and structure
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A* Length = 738 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Length = 349 Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Length = 336 Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Length = 412 Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ... Length = 427 Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Length = 354 Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Length = 496 Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Length = 435 Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Length = 409 Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Length = 429 Back     alignment and structure
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Length = 333 Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} PDB: 3ty3_A Length = 366 Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Length = 423 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query509
3us8_A427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 100.0
4aoy_A402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 100.0
1lwd_A413 Isocitrate dehydrogenase; tricarboxylic acid cycle 100.0
2uxq_A402 Isocitrate dehydrogenase native; psychrophilic, co 100.0
1zor_A399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 100.0
2qfy_A427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 100.0
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 100.0
3flk_A364 Tartrate dehydrogenase/decarboxylase; cytoplasm, l 100.0
2y3z_A359 3-isopropylmalate dehydrogenase; oxidoreductase, L 100.0
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 100.0
3u1h_A390 3-isopropylmalate dehydrogenase; oxidored; 2.80A { 100.0
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 100.0
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 100.0
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 100.0
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 100.0
3vmk_A375 3-isopropylmalate dehydrogenase; oxidoreductase, d 100.0
3udu_A361 3-isopropylmalate dehydrogenase; structural genomi 100.0
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 100.0
1cnz_A363 IPMDH, IMDH, protein (3-isopropylmalate dehydrogen 100.0
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 100.0
1tyo_A435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 100.0
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 100.0
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 100.0
2d1c_A 496 Isocitrate dehydrogenase; structural genomics, NPP 100.0
3r8w_A405 3-isopropylmalate dehydrogenase 2, chloroplastic; 100.0
1vlc_A366 3-isopropylmalate dehydrogenase; TM0556, structura 100.0
1a05_A358 IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxid 100.0
1w0d_A337 3-isopropylmalate dehydrogenase; oxidoreductase, l 100.0
1itw_A741 Isocitrate dehydrogenase; greece KEY motif, oxidor 96.94
2b0t_A738 NADP isocitrate dehydrogenase; monomeric, IDH, oxi 96.94
2hi1_A330 4-hydroxythreonine-4-phosphate dehydrogenase 2; py 92.18
4aty_A349 Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; o 92.17
1yxo_A328 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA 92.01
3lxy_A334 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA 91.87
3tsn_A367 4-hydroxythreonine-4-phosphate dehydrogenase; stru 90.38
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Back     alignment and structure
Probab=100.00  E-value=5.9e-120  Score=953.27  Aligned_cols=398  Identities=63%  Similarity=1.030  Sum_probs=370.9

Q ss_pred             cceeccccEEEEcCCCcHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcc
Q 010485           80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET  159 (509)
Q Consensus        80 ~ki~~~~~I~vLpGDGIGpEI~~~~~~~l~~~~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~  159 (509)
                      +||+|.+||++|||||||||||++++++|.+++++|+|+++++|.+++++||+++|++++++|+++||+||||++||.+.
T Consensus        25 ~~i~~~~~I~vipGDGIGpEI~~~~~~vL~~~~~~i~~~~~~~G~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~  104 (427)
T 3us8_A           25 AKIKVANPVVELDGDEMTRIIWQFIKDKLIHPYLDLDLEYYDLGVENRDATDDQVTIDAANAIKKHGVGVKCATITPDEG  104 (427)
T ss_dssp             CCEECCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHH
T ss_pred             ccccccceEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCcc
Confidence            69999999999999999999999999999888999999999999999999999999999999999999999999999998


Q ss_pred             hhhhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCCCCCCCCEEEEecccCccccccceeecCCCceeeeecCCCC
Q 010485          160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG  239 (509)
Q Consensus       160 ~~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~~~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~g  239 (509)
                      +++||+++++|+|+|++|||+||||+|+||+.|+++|++.++|++|||||||||||+|+|+|+...++++.++.|++++|
T Consensus       105 ~~~e~~l~~~~~s~n~~LRk~LdlyanvRPv~~~~ip~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~l~~~~~~G  184 (427)
T 3us8_A          105 RVEEFKLKKMWKSPNGTIRNILGGVIFREPIICKNVPRLVPGWTKPIIVGRHAFGDQYRATDFKFPGKGKLSIKFVGEDG  184 (427)
T ss_dssp             HHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETTS
T ss_pred             ccccccccccccCchHHHHHHhCCeEEecceeccCCCCCCCCCCCCEEEEEeCCCCccCCceeEEecCCcceeeeecccc
Confidence            89999999999999999999999999999986699998888888999999999999999999998777877777877766


Q ss_pred             CCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHHHhhhhccCCC
Q 010485          240 TGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH  319 (509)
Q Consensus       240 ~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~P  319 (509)
                       +.....+++|++++++++++|||+++|||+|+||+||++|++|||+|||+||||.|||+|+++|+|||+++|.++|++|
T Consensus       185 -~~~~~~~~~~~~~~va~~~~~T~~~~eRiar~AFe~A~~r~kkVt~v~KaNIlk~tdglfr~~~~eva~~eYp~~~~~~  263 (427)
T 3us8_A          185 -QTIEHDVYDAPGAGVALAMYNLDESITEFARASFNYGLQRKVPVYLSTKNTILKAYDGRFKDIFQKVFDEEFAAQFKAE  263 (427)
T ss_dssp             -CEEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred             -ccccccccccCCCcEEEEEeeCHHHHHHHHHHHHHHHHHcCCcEEEEECcccchhhhhHHHHHHHHHHHHhCccccCCC
Confidence             4445667778888888999999999999999999999999999999999999999999999999999987898888888


Q ss_pred             CeeEeeehHHHHHHHHhhCCCccEEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCCcccccccC
Q 010485          320 SIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKG  399 (509)
Q Consensus       320 dI~~e~~lVDa~amqlVk~P~~FVIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd~~~~~IAG  399 (509)
                      +|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|||++++++||||+||||||||+++|||
T Consensus       264 ~I~~~~~~VD~~~mqlv~~P~~FVivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~~a~fEp~HGSAPd~~~~~iAG  343 (427)
T 3us8_A          264 KLWYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDIVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGTVTRHYRQHQKG  343 (427)
T ss_dssp             TCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHSCTTSEEEEEECTTSCCEEEECCSCCCHHHHHHHHTT
T ss_pred             CeEEEEEEHHHHHHHHhhCCCCcEEEeCCcCCcHHHHHHHHhcCChhhCceeEECCCCCeEEEeCCCCCcCCccchhcCC
Confidence            99999999999999999999999999999999999999999999999999999998764599999999999999999999


Q ss_pred             CCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhccccccCHHHHHHH
Q 010485          400 QETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFYYLFLLISK  479 (509)
Q Consensus       400 k~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~~~~~T~ef~~~  479 (509)
                      ||++|||+|+||||+|||+|||++++ |++|.++|++|++||.++|+ +|++|+||||.+..     ..+.++|+||+|+
T Consensus       344 k~i~ANP~A~IlS~ammL~hlG~~~~-~~~l~~~A~~Ie~Av~~~l~-~g~~T~Dlgg~~~~-----~~~~~~T~e~~da  416 (427)
T 3us8_A          344 EETSTNSIASIFAWTRGLAHRAKLDG-NAELAKFSETLERVCVDTVE-SGFMTKDLALLIGP-----DQPWLSTTGFLDK  416 (427)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHH-TTCCBHHHHHHHCT-----TCCCBCHHHHHHH
T ss_pred             CCceeCHHHHHHHHHHHHHHhccccc-cchhHHHHHHHHHHHHHHHH-cCCcCccccccccc-----CCcccCHHHHHHH
Confidence            99889999999999999999999887 78889999999999999999 99999999983200     1224799999999


Q ss_pred             HHHHhh
Q 010485          480 ISINKY  485 (509)
Q Consensus       480 Ii~~~~  485 (509)
                      |+++|.
T Consensus       417 V~~~l~  422 (427)
T 3us8_A          417 IDENLR  422 (427)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999985
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Back     alignment and structure
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Back     alignment and structure
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Back     alignment and structure
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Back     alignment and structure
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* Back     alignment and structure
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A Back     alignment and structure
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ... Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Back     alignment and structure
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A* Back     alignment and structure
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Back     alignment and structure
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Back     alignment and structure
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Back     alignment and structure
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana} Back     alignment and structure
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1 Back     alignment and structure
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1 Back     alignment and structure
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A Back     alignment and structure
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A* Back     alignment and structure
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A* Back     alignment and structure
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium} Back     alignment and structure
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400} Back     alignment and structure
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa} Back     alignment and structure
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A Back     alignment and structure
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 509
d1lwda_413 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 1e-116
d1t0la_414 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 1e-115
d1hqsa_423 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Baci 3e-34
d1pb1a_416 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Esch 2e-26
d1cnza_363 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 5e-25
d1vlca_362 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 2e-19
d1a05a_357 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 9e-19
d1itwa_740 c.77.1.2 (A:) Monomeric isocitrate dehydrogenase { 2e-18
d1v53a1356 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase 7e-16
d1wpwa_336 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 3e-14
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 413 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: NADP-dependent isocitrate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  346 bits (888), Expect = e-116
 Identities = 239/343 (69%), Positives = 286/343 (83%)

Query: 81  RVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAE 140
           R+KV  P+VEMDGDEMTRIIWQ IK+KLI P++D+ +KY+DLG+ NRD T+D+VT++SA 
Sbjct: 4   RIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSAL 63

Query: 141 ATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP 200
           AT KY+VA+KCATITPDE R++EF LK MW+SPNGTIRNIL GTVFREPI+C+NIPR+VP
Sbjct: 64  ATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVP 123

Query: 201 GWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMY 260
           GW KPI IGRHA GDQY+ATD V+   G  K+VF P+DG+   + +VYNF   G+ + MY
Sbjct: 124 GWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAGGVGMGMY 183

Query: 261 NVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS 320
           N DESI  FA S    A  KKWPLY+STKNTILK YDGRFKDIFQ+++E+ ++  F+++ 
Sbjct: 184 NTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYK 243

Query: 321 IWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTL 380
           IWYEHRLIDDMVA  +KS GG+VWACKNYDGDVQSD+LAQGFGSLGLMTSVL+  DGKT+
Sbjct: 244 IWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTI 303

Query: 381 EAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYML 423
           EAEAAHGTVTRH+R HQKG+ TSTN IASIFAWTRGLEHR  L
Sbjct: 304 EAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKL 346
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 414 Back     information, alignment and structure
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Length = 423 Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Length = 416 Back     information, alignment and structure
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Length = 363 Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Length = 362 Back     information, alignment and structure
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Length = 357 Back     information, alignment and structure
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 740 Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Length = 356 Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Length = 336 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query509
d1lwda_413 NADP-dependent isocitrate dehydrogenase {Pig (Sus 100.0
d1cnza_363 3-isopropylmalate dehydrogenase, IPMDH {Salmonella 100.0
d1v53a1356 3-isopropylmalate dehydrogenase, IPMDH {Bacillus c 100.0
d1wpwa_336 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus 100.0
d1hqsa_423 Isocitrate dehydrogenase, ICDH {Bacillus subtilis 100.0
d1t0la_414 NADP-dependent isocitrate dehydrogenase {Human (Ho 100.0
d1vlca_362 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga 100.0
d1a05a_357 3-isopropylmalate dehydrogenase, IPMDH {Thiobacill 100.0
d1pb1a_416 Isocitrate dehydrogenase, ICDH {Escherichia coli [ 100.0
d1g2ua_345 3-isopropylmalate dehydrogenase, IPMDH {Thermus th 100.0
d1w0da_337 3-isopropylmalate dehydrogenase, IPMDH {Mycobacter 100.0
d1itwa_740 Monomeric isocitrate dehydrogenase {Azotobacter vi 98.85
d1ptma_329 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 94.58
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: NADP-dependent isocitrate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=3.7e-105  Score=837.42  Aligned_cols=405  Identities=59%  Similarity=1.000  Sum_probs=359.6

Q ss_pred             ccceeccccEEEEcCCCcHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCc
Q 010485           79 IDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDE  158 (509)
Q Consensus        79 ~~ki~~~~~I~vLpGDGIGpEI~~~~~~~l~~~~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~  158 (509)
                      .+||+|++||++|||||||+++|+.++++++.++++++|++||+|.++|++||+++|+|++++||++|++||||++||++
T Consensus         2 ~~ki~v~~pIv~l~GDeit~~~~~~i~~~l~~~~~di~~~~~d~G~~~~~~tg~~l~~eaiea~k~~~aiLkGa~~tP~~   81 (413)
T d1lwda_           2 DQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDE   81 (413)
T ss_dssp             CCCEECSSCEEEEECCHHHHHHHHHHHHHTTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCH
T ss_pred             CCcccccCCEEEecCccHHHHHHHHHHHHHccCCCCceEEEEeCCHHHHHHhCCcCcHHHHHHHHHcCEEEECCcCCCCc
Confidence            47999999999999999999999999999998999999999999999999999999999999999999999999999998


Q ss_pred             chhhhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCCCCCCCCEEEEecccCccccccceeecCCCceeeeecCCC
Q 010485          159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED  238 (509)
Q Consensus       159 ~~~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~~~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~  238 (509)
                      .++++..+.++|+|||+.||+.||||+|+||+++...++...++++|+||+||||||+|+|.|+....+....+.+....
T Consensus        82 ~~~~~~~~~~~~~s~n~~lR~~ldl~an~RP~~~~~~~~~~~~~~~d~VivREnteg~Y~g~e~~~~~~~~~~i~~~~~~  161 (413)
T d1lwda_          82 ARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKD  161 (413)
T ss_dssp             HHHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETT
T ss_pred             cccccccccccccchhhhHHHhcCCceEEecccccCCCCcCCCCCCCeEEeeccccceeeccceeccCcccceeEEeccc
Confidence            87777778889999999999999999999999654334455567889999999999999999998765555445555556


Q ss_pred             CCCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHHHhhhhccCC
Q 010485          239 GTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEE  318 (509)
Q Consensus       239 g~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~  318 (509)
                      |........+++.+..+++++++|+.+++||+|+||++|++|+++||++||+|||+.++|+|+++|+||++++|+.++++
T Consensus       162 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ria~~af~~a~~~~~~vt~v~K~nvl~~~~glf~~~~~eva~~~p~~~~~~  241 (413)
T d1lwda_         162 GSSAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDK  241 (413)
T ss_dssp             CCCCEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             cccccccccccccccccceeeccccchhhHHHHHHHHHHHhcCcceEEecccceeeehhHHHHHHHHHHHHHhccccccc
Confidence            65555556666778888899999999999999999999999999999999999999999999999999998544444445


Q ss_pred             CCeeEeeehHHHHHHHHhhCCCccEEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCCcccc-cc
Q 010485          319 HSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRL-HQ  397 (509)
Q Consensus       319 PdI~~e~~lVDa~amqlVk~P~~FVIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd~~~~-~I  397 (509)
                      ++|+++|++||+|+|+|+++|+.|||||+|||||||||++|+++|||||+||+|+|+++...+|||+|||||||+.+ .|
T Consensus       242 ~~I~~~~~~vd~~~~~lv~~p~~~Vivt~NlfGDIlSDlaa~l~GglGl~pSanig~~~~~~~fe~~HGsap~~ag~~~i  321 (413)
T d1lwda_         242 YKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQK  321 (413)
T ss_dssp             TTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECCSCCCHHHHHHHHT
T ss_pred             cEEEEehhhhhhhhhhhcCCCCCeEEEEccccchhHhhHHHHhcCCCCCCcccccCCCccccccccccccchhhcchhhc
Confidence            58999999999999999999986699999999999999999999999999999999876457899999999998887 48


Q ss_pred             cCCCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhh-hccccccCHHHH
Q 010485          398 KGQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLIL-LIDRQFYYLFLL  476 (509)
Q Consensus       398 AGk~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~-~~~~~~~~T~ef  476 (509)
                      +|||+ |||+|||||++|||+|||+.|. +++|.++|++|++||.++|+ +|++|+||||+..+.+. ....+.+||+||
T Consensus       322 agk~i-ANP~a~IlS~ammL~~lg~~~~-~~~l~~~A~~Ie~Av~~~l~-~G~~T~DlgG~~~~~~~~~~~~~~~sT~ef  398 (413)
T d1lwda_         322 GRPTS-TNPIASIFAWTRGLEHRGKLDG-NQDLIRFAQTLEKVCVETVE-SGAMTKDLAGCIHGLSNVKLNEHFLNTSDF  398 (413)
T ss_dssp             TCCCC-CCCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHCTTSCCBTTTBCCHHHH
T ss_pred             CCccc-cChHHHHHHHHHHHHHhccccc-chHHHHHHHHHHHHHHHHHH-CCCCCcccCCCccccccccccCCccCHHHH
Confidence            88999 9999999999999999999987 88899999999999999999 99999999997422111 112334899999


Q ss_pred             HHHHHHHhhh
Q 010485          477 ISKISINKYL  486 (509)
Q Consensus       477 ~~~Ii~~~~~  486 (509)
                      +|+|+++|..
T Consensus       399 ~daV~~~L~~  408 (413)
T d1lwda_         399 LDTIKSNLDR  408 (413)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999975
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1ptma_ c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogenase PdxA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure