Citrus Sinensis ID: 010493
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 509 | ||||||
| 255553428 | 568 | gd2b, putative [Ricinus communis] gi|223 | 0.937 | 0.839 | 0.758 | 0.0 | |
| 356539148 | 550 | PREDICTED: protein PNS1-like [Glycine ma | 0.960 | 0.889 | 0.745 | 0.0 | |
| 224104107 | 540 | predicted protein [Populus trichocarpa] | 0.937 | 0.883 | 0.722 | 0.0 | |
| 357458339 | 593 | Protein PNS1 [Medicago truncatula] gi|35 | 0.976 | 0.838 | 0.724 | 0.0 | |
| 449464020 | 560 | PREDICTED: CTL-like protein DDB_G0274487 | 0.966 | 0.878 | 0.738 | 0.0 | |
| 449531655 | 549 | PREDICTED: CTL-like protein DDB_G0274487 | 0.966 | 0.896 | 0.738 | 0.0 | |
| 225449991 | 540 | PREDICTED: protein PNS1 [Vitis vinifera] | 0.933 | 0.879 | 0.712 | 0.0 | |
| 224059594 | 435 | predicted protein [Populus trichocarpa] | 0.850 | 0.995 | 0.808 | 0.0 | |
| 22326789 | 569 | Plasma-membrane choline transporter fami | 0.962 | 0.861 | 0.665 | 0.0 | |
| 17064962 | 569 | Unknown protein [Arabidopsis thaliana] g | 0.962 | 0.861 | 0.665 | 0.0 |
| >gi|255553428|ref|XP_002517755.1| gd2b, putative [Ricinus communis] gi|223543027|gb|EEF44562.1| gd2b, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/506 (75%), Positives = 428/506 (84%), Gaps = 29/506 (5%)
Query: 1 MMQTLNPTNPLRIVINGGRRVTAPRIATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPP 60
M+Q LNP+NPLRIVIN + R+A+P PSQ S PRS
Sbjct: 90 MLQRLNPSNPLRIVIN--------------------NSTRVASPSPSQTSLPRS------ 123
Query: 61 APTPTPQQASRTALNSKKYTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRK 120
TP PQ S T LNS++YTNKISLFLFVLHMILAIGLVGFL+FKGIQGL+ AS+S+KRK
Sbjct: 124 --TPNPQ-PSITTLNSRRYTNKISLFLFVLHMILAIGLVGFLIFKGIQGLLEASDSVKRK 180
Query: 121 EKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICFQ 180
EKR+LKY LPQVEAA+LLSI+L+ WQKAVRVWP+ MVHFILW SFF+SLSAGILLICFQ
Sbjct: 181 EKRILKYFLPQVEAAALLSITLACVWQKAVRVWPRIMVHFILWCSFFMSLSAGILLICFQ 240
Query: 181 KPATDGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTG 240
K +TDGVGVC IAFAIGNGLYACWV+QRI F K+LI SL+PV KF DLN+PTYWMLG G
Sbjct: 241 KASTDGVGVCLIAFAIGNGLYACWVNQRIKFSTKILIKSLEPVPKFGDLNEPTYWMLGLG 300
Query: 241 FLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQS 300
F+WMS WILAV+GA NF++PPLIIIALVLSLAW TEVMRNVVNLTV RVISLYY+ GMQ+
Sbjct: 301 FVWMSLWILAVVGASNFHYPPLIIIALVLSLAWVTEVMRNVVNLTVSRVISLYYLRGMQA 360
Query: 301 STQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMES 360
STQFCFQRA+T+NLGSACLGS+FVP+IEALRIVARGLNLLEGEDEFMFSCAHCCL +M S
Sbjct: 361 STQFCFQRAVTRNLGSACLGSVFVPSIEALRIVARGLNLLEGEDEFMFSCAHCCLGVMNS 420
Query: 361 IFRCGNGWAYVQIAAYGKGFVQASQDTWALFERQEMEPIVDSDITSSICFLTGVCSGCIC 420
IF+ GN WAYVQIAAYGKGFVQASQDTW LF+RQ ME IVDSDITSSICFLTGVCSG IC
Sbjct: 421 IFKNGNSWAYVQIAAYGKGFVQASQDTWELFKRQNMEIIVDSDITSSICFLTGVCSGSIC 480
Query: 421 VIVTAAWTAKVHQPFTATISLLTFIIGYLMTRIAMALPQACVSCYYVCYAQNPDNRLFDS 480
VI+ AAWT VH+PFTAT+SLL F IGYLM RIAMA+P ACVSCYYVCYA+NP+NRLFD+
Sbjct: 481 VILVAAWTHTVHEPFTATLSLLAFFIGYLMARIAMAVPHACVSCYYVCYAENPENRLFDT 540
Query: 481 TIKDRLSLMKAGRDVVVPTPRVPHRF 506
TIKDR +K+G DVVVPTPRVPHRF
Sbjct: 541 TIKDRQERIKSGHDVVVPTPRVPHRF 566
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356539148|ref|XP_003538062.1| PREDICTED: protein PNS1-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|224104107|ref|XP_002313322.1| predicted protein [Populus trichocarpa] gi|222849730|gb|EEE87277.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|357458339|ref|XP_003599450.1| Protein PNS1 [Medicago truncatula] gi|355488498|gb|AES69701.1| Protein PNS1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|449464020|ref|XP_004149727.1| PREDICTED: CTL-like protein DDB_G0274487-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449531655|ref|XP_004172801.1| PREDICTED: CTL-like protein DDB_G0274487-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|225449991|ref|XP_002273748.1| PREDICTED: protein PNS1 [Vitis vinifera] gi|297736338|emb|CBI24976.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224059594|ref|XP_002299924.1| predicted protein [Populus trichocarpa] gi|222847182|gb|EEE84729.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|22326789|ref|NP_196880.2| Plasma-membrane choline transporter family protein [Arabidopsis thaliana] gi|332004555|gb|AED91938.1| Plasma-membrane choline transporter family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|17064962|gb|AAL32635.1| Unknown protein [Arabidopsis thaliana] gi|21387171|gb|AAM47989.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 509 | ||||||
| TAIR|locus:2177110 | 569 | AT5G13760 "AT5G13760" [Arabido | 0.844 | 0.755 | 0.706 | 1.5e-177 | |
| TAIR|locus:2079444 | 482 | AT3G03700 [Arabidopsis thalian | 0.797 | 0.842 | 0.308 | 5.1e-51 | |
| TAIR|locus:2100865 | 482 | AT3G04440 [Arabidopsis thalian | 0.797 | 0.842 | 0.308 | 5.1e-51 | |
| TAIR|locus:2175961 | 474 | AT5G17830 "AT5G17830" [Arabido | 0.636 | 0.683 | 0.288 | 4.7e-32 | |
| TAIR|locus:2031235 | 488 | AT1G25500 [Arabidopsis thalian | 0.552 | 0.575 | 0.263 | 3.5e-23 | |
| DICTYBASE|DDB_G0274487 | 555 | DDB_G0274487 "Protein PNS1" [D | 0.552 | 0.506 | 0.240 | 1.1e-16 | |
| ASPGD|ASPL0000039512 | 533 | AN10377 [Emericella nidulans ( | 0.414 | 0.395 | 0.228 | 2.9e-12 | |
| UNIPROTKB|F1P6W3 | 344 | SLC44A5 "Uncharacterized prote | 0.328 | 0.485 | 0.270 | 6.3e-11 | |
| UNIPROTKB|F1S9Q9 | 678 | SLC44A5 "Uncharacterized prote | 0.328 | 0.246 | 0.270 | 2.7e-10 | |
| UNIPROTKB|F1P6W2 | 705 | SLC44A5 "Uncharacterized prote | 0.328 | 0.236 | 0.270 | 3.7e-10 |
| TAIR|locus:2177110 AT5G13760 "AT5G13760" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1658 (588.7 bits), Expect = 1.5e-177, Sum P(2) = 1.5e-177
Identities = 305/432 (70%), Positives = 358/432 (82%)
Query: 73 ALNSKKYTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQV 132
+LNS KYTNK L LF+ H ++AIG VGFLVF+G+QGLI ++ S+KRKEK++L++LLPQV
Sbjct: 133 SLNSTKYTNKFFLLLFIFHKVVAIGFVGFLVFRGVQGLIGSNGSVKRKEKKILRFLLPQV 192
Query: 133 EAAXXXXXXXXXXWQKAVRVWPKFMVHFILWXXXXXXXXAGILLICFQKPATDGVGVCFI 192
EAA WQ A R+WP FM+HFILW +GILL+CFQ PATD VGVC I
Sbjct: 193 EAASLLSIILAFLWQMAFRIWPDFMIHFILWSTFLMSLSSGILLLCFQMPATDAVGVCLI 252
Query: 193 AFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVI 252
AF+IGNGLYACWV++RI FC K+L+ SL+PVSKFSDLN PTY+ML GFLWMS WI VI
Sbjct: 253 AFSIGNGLYACWVTRRIKFCSKILVKSLEPVSKFSDLNLPTYYMLAAGFLWMSMWIFGVI 312
Query: 253 GALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQ 312
GALNFYFPPL+II LVLSLAWTTEVMRN+VNLTV RVI+LYY+ GMQSST+F FQRAL++
Sbjct: 313 GALNFYFPPLVIIGLVLSLAWTTEVMRNIVNLTVSRVIALYYLRGMQSSTRFSFQRALSR 372
Query: 313 NLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQ 372
NLGSACLGSLFVPTIEALRI+ARGLNLL+GEDEFMF CA+CCLR+M+ IF GNGWA+VQ
Sbjct: 373 NLGSACLGSLFVPTIEALRILARGLNLLKGEDEFMFCCANCCLRLMDFIFEHGNGWAFVQ 432
Query: 373 IAAYGKGFVQASQDTWALFERQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWTAKVH 432
IAAYGKGFV+ASQDTW LFE ++M IVD+DITSSICFLTG+CSGC+C+IV AAWT V+
Sbjct: 433 IAAYGKGFVRASQDTWKLFEDEDMVEIVDADITSSICFLTGICSGCVCLIVAAAWTHTVY 492
Query: 433 QPFTATISLLTFIIGYLMTRIAMALPQACVSCYYVCYAQNPDNRLF-DSTIKDRLSLMKA 491
+PFTATISLL F IGYLMTRI+MALP ACV CYY CYA+NP++R F D IK R ++K+
Sbjct: 493 KPFTATISLLAFFIGYLMTRISMALPHACVGCYYTCYAENPESRFFEDKVIKTRQDMIKS 552
Query: 492 GRDVVVPT-PRV 502
GR V T PRV
Sbjct: 553 GRVAVTSTTPRV 564
|
|
| TAIR|locus:2079444 AT3G03700 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2100865 AT3G04440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2175961 AT5G17830 "AT5G17830" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2031235 AT1G25500 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0274487 DDB_G0274487 "Protein PNS1" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| ASPGD|ASPL0000039512 AN10377 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1P6W3 SLC44A5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1S9Q9 SLC44A5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1P6W2 SLC44A5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| estExt_fgenesh4_pm.C_LG_IX0499 | hypothetical protein (540 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 509 | |||
| pfam04515 | 327 | pfam04515, Choline_transpo, Plasma-membrane cholin | 2e-66 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 1e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 1e-04 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 7e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 8e-04 | |
| PHA03378 | 991 | PHA03378, PHA03378, EBNA-3B; Provisional | 0.002 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 0.003 | |
| PLN02983 | 274 | PLN02983, PLN02983, biotin carboxyl carrier protei | 0.003 | |
| PRK14965 | 576 | PRK14965, PRK14965, DNA polymerase III subunits ga | 0.003 | |
| COG3147 | 226 | COG3147, DedD, Uncharacterized protein conserved i | 0.004 |
| >gnl|CDD|218122 pfam04515, Choline_transpo, Plasma-membrane choline transporter | Back alignment and domain information |
|---|
Score = 217 bits (554), Expect = 2e-66
Identities = 80/327 (24%), Positives = 139/327 (42%), Gaps = 35/327 (10%)
Query: 189 VCFIAFAIGNGLYACW---VSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMS 245
+ I F + + + +RI +L + VSK L +++
Sbjct: 1 IVAIIFTVLTLILLLLIIFLRKRIPLAIALLKTASDAVSKNPSLLLVPLITFLALAAFIA 60
Query: 246 FWILAVIGALNFY-------------------FPPLIIIALVLSLAWTTEVMRNVVNLTV 286
WI+ + +++ L+ L WT+EV+ V ++T+
Sbjct: 61 LWIVVAVALYTSGDPKYNNGGCPTGGEYKYDSKLIGLLVYLLFGLFWTSEVILAVQHVTI 120
Query: 287 CRVISLYYILGMQ-----SSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLE 341
V++ +Y G + T F+RALT + GS C GSL V I+ +RI+ L
Sbjct: 121 AGVVATWYFAGGKRNMPKFPTLSSFKRALTYSFGSICFGSLIVAIIQFIRILLEYLRRKL 180
Query: 342 GEDE-----FMFSCAHCCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDTWALFERQEM 396
D+ F+ C CCL +E N AYV IA YGKGF +++DTW L +R +
Sbjct: 181 KGDQNKFAKFLLCCLKCCLWCLEKFVEYLNRNAYVHIAIYGKGFCTSAKDTWELLKRNGL 240
Query: 397 EPIVDSDITSSICFLTGVCSGCICVIVTAAW---TAKVHQPFTATISLLTFIIGYLMTRI 453
+V+ + + FL + + ++ W T + A L F+I YL+ +
Sbjct: 241 RALVNDGLGGFVLFLGKLFVSALTGLLAYLWLTYTDNSDLSYYAVPVALAFLISYLIASV 300
Query: 454 AMALPQACVSCYYVCYAQNPDNRLFDS 480
M++ ++ V +VC+A++P+ D
Sbjct: 301 FMSVYESGVDTIFVCFAEDPELLRNDG 327
|
This family represents a high-affinity plasma-membrane choline transporter in C.elegans which is thought to be rate-limiting for ACh synthesis in cholinergic nerve terminals. Length = 327 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase | Back alignment and domain information |
|---|
| >gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 509 | |||
| KOG1362 | 577 | consensus Choline transporter-like protein [Lipid | 100.0 | |
| PF04515 | 334 | Choline_transpo: Plasma-membrane choline transport | 100.0 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 97.15 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 96.72 | |
| PRK15319 | 2039 | AIDA autotransporter-like protein ShdA; Provisiona | 93.61 | |
| PRK09752 | 1250 | adhesin; Provisional | 89.59 | |
| PHA03247 | 3151 | large tegument protein UL36; Provisional | 88.5 | |
| KOG3895 | 488 | consensus Synaptic vesicle protein Synapsin [Signa | 87.7 | |
| COG5178 | 2365 | PRP8 U5 snRNP spliceosome subunit [RNA processing | 84.23 | |
| COG5178 | 2365 | PRP8 U5 snRNP spliceosome subunit [RNA processing | 83.14 |
| >KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-65 Score=547.38 Aligned_cols=363 Identities=23% Similarity=0.436 Sum_probs=293.5
Q ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHHHH--HHHhcc-------CC------c-
Q 010493 121 EKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGIL--LICFQK-------PA------T- 184 (509)
Q Consensus 121 ~~~dl~~~~~~l~~~~~ls~vls~~~l~llr~~~~~~i~~~vw~~iil~~~~~i~--~~~~~~-------~~------~- 184 (509)
...|+..+|+++...++++++++++++.++|.+++ ..+|+.+++.+.+.++ +.|+.. +. .
T Consensus 141 i~~~i~~sw~~i~~~~~~~l~~s~i~~~~lr~~~~----~l~~~~~~~~l~~l~~~~~~~~~~y~~~~~~~~~i~~~~~~ 216 (577)
T KOG1362|consen 141 IFADILRSWYTILSLLGIALVLSLIFTKLLRFLAA----ILPWILIILVLVGLLSGIWFCWFLYAILRNTKVTIGFTSSL 216 (577)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccceeecchHH
Confidence 66788899999999999999999999999996666 4477777666554433 233211 10 0
Q ss_pred -----------hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 010493 185 -----------DGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIG 253 (509)
Q Consensus 185 -----------~~~~i~~~i~ai~~~ly~~~~r~RI~~ai~ilk~A~~~i~~~p~l~~~~~~~~~i~~~~~~~W~~~~iG 253 (509)
+..+++.+++.++.++|++++|+||+++++++|+|+|++.+.|+++++|..++++.++|+++|+...++
T Consensus 217 ~~~~~~~~~~l~~~~Iv~~v~~vv~~l~~i~lr~RI~~a~all~ea~k~i~~~p~~~~~p~~~~~v~~~~i~~wv~~~~~ 296 (577)
T KOG1362|consen 217 FVAVGNQLTLLDAVGIVLTVISVVLVLYIIFLRKRIPLAIALLKEATKAIGSLPSTLFPPALTFFVLLLFISLWVFVALF 296 (577)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 136788888888887888999999999999999999999999999999999999999999999988762
Q ss_pred c--cc--------ccCch----HHHHHHHHH-HHHHHHHHhhcccccccceEEEEeecCCC-----ccHHHHHHHHHhhh
Q 010493 254 A--LN--------FYFPP----LIIIALVLS-LAWTTEVMRNVVNLTVCRVISLYYILGMQ-----SSTQFCFQRALTQN 313 (509)
Q Consensus 254 ~--~~--------~~~~~----~~~~~~lf~-~~Wt~~~i~~v~~~tvAg~va~WYF~~~~-----~~v~~S~~ra~~~s 313 (509)
- .+ +.+++ .+++++++. ++|++||+.|++|+++||++++|||++++ .|+..|++|+++||
T Consensus 297 l~t~~~~~~gg~~~~~~~~~~~~~~~~~vv~~l~Wt~~fi~a~q~~vISgava~~Yf~~~~~~iP~~p~~~al~ra~~yh 376 (577)
T KOG1362|consen 297 LVTSGPNSEGGCACTYSGGSLRILFWLLVVGSLIWTSEFILALQQVVISGAVASWYFARDKQDIPSSPLFSALRRALRYH 376 (577)
T ss_pred HhhcccccCCCceeeccCCcchhHhHHHHHHHHHHHHHHHHHHHHHhhhhhhheeeEecCCCCCCCchHHHHHHHHHHHh
Confidence 2 11 22322 356667666 99999999999999999999999997443 68999999999999
Q ss_pred hhhHHhhhhHHHHHHHHHHHHHHhhh-ccCC----cchhHHHHHHHHHHHHHHHHhchhhHHHHHHhcCCchhHhHHHHH
Q 010493 314 LGSACLGSLFVPTIEALRIVARGLNL-LEGE----DEFMFSCAHCCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDTW 388 (509)
Q Consensus 314 fGSIc~GSLIvaii~~lR~i~~~l~~-~~~~----~~~l~~c~~C~l~~le~~i~~~N~~Ayi~vAi~G~~F~~Sak~a~ 388 (509)
+||+|+|||++++|+++|.++|++++ +++. .++++||+.||+||+|+++||+|||||+|+|||||+||+||||||
T Consensus 377 lGSi~~GSliv~iV~i~R~iL~~i~~~lk~~~~~~~~~~~~c~~Cc~w~le~~i~~lNrnAYi~iAiyGk~Fc~SAkda~ 456 (577)
T KOG1362|consen 377 LGSICFGSLLVALVRILRVILRYIRHKLKGSQNAAARILLMCLKCCFWCLEKFIKFLNRNAYVMIAIYGKNFCTSAKDAW 456 (577)
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhcCcchheeeeccCccchHHHHHHH
Confidence 99999999999999999999999986 4443 369999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcceecccchHHHHHHHhHHHHHHHHHHHHHhhhccCCC--chhHHHHHHHHHH-HHHHHhhhhhHHHHHHHH
Q 010493 389 ALFERQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWTAKVHQP--FTATISLLTFIIG-YLMTRIAMALPQACVSCY 465 (509)
Q Consensus 389 ~L~~~n~~~alv~~~l~~~vlfL~~l~vg~i~~~~~~~~~~~~~~~--~~~~~~l~~~~i~-y~i~~~f~~v~~~~VdTi 465 (509)
+|++||..+....|.++++++|+|++++ ++++.++..|....++. +++.+.+++++++ |+|+++|++|++++|||+
T Consensus 457 ~ll~~Nv~~vv~~d~vs~~llflgk~l~-~~~~g~~g~~~l~~~~~~l~~y~V~lla~iig~ylIa~~f~~v~~m~Vdtl 535 (577)
T KOG1362|consen 457 ELLRRNVLRVVDVDLVSDFLLFLGKLLG-AIGSGVAGIWLLIGRKDVLYYYVVPLLAFIIGAYLIAHIFFSVLEMCVDTL 535 (577)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcceeEeHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999994444444446666667766654 45555554544444444 5566777888888 999999999999999999
Q ss_pred hHHhcccCCCCcccCCchhHHHH
Q 010493 466 YVCYAQNPDNRLFDSTIKDRLSL 488 (509)
Q Consensus 466 fvCyaeDpe~~~~~~~~p~~~~~ 488 (509)
|+||+||||.+..+.+.|+..+|
T Consensus 536 flCf~eD~e~n~gs~~~p~~~~~ 558 (577)
T KOG1362|consen 536 FLCFAEDPESNDGSPEKPQFMSE 558 (577)
T ss_pred hheeEecHhhcCCCCCcceeeeH
Confidence 99999999974444445553333
|
|
| >PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [] | Back alignment and domain information |
|---|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK15319 AIDA autotransporter-like protein ShdA; Provisional | Back alignment and domain information |
|---|
| >PRK09752 adhesin; Provisional | Back alignment and domain information |
|---|
| >PHA03247 large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00