Citrus Sinensis ID: 010493


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------51
MMQTLNPTNPLRIVINGGRRVTAPRIATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPTPTPQQASRTALNSKKYTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICFQKPATDGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDTWALFERQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWTAKVHQPFTATISLLTFIIGYLMTRIAMALPQACVSCYYVCYAQNPDNRLFDSTIKDRLSLMKAGRDVVVPTPRVPHRFRET
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccccccccccc
ccccccccccEEEEEccccEEcccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEEccccHHHcccccccccHHHHHHHHHHHcccccccHHcccc
mmqtlnptnplrivinggrrvtapriatpppsqpsrqapriatpppsqpsrprsistsppaptptpqqasrtalnskkytnKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICfqkpatdgvgVCFIAFAIGNGLYACWVSQRIGFCCKVLIISlqpvskfsdlnqptywmlGTGFLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQnlgsaclgslfvpTIEALRIVARGLnllegedeFMFSCAHCCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDTWALFErqemepivdsditssICFLTGVCSGCICVIVTAAwtakvhqpfTATISLLTFIIGYLMTRIAMALPQACVSCYYvcyaqnpdnrlfdsTIKDRLSLMKagrdvvvptprvphrfret
mmqtlnptnplrivinggrrvtapriatpppsqpsrqapriatpppsqpsrprsistsppaptptpqqasrtalnSKKYTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICFQKPATDGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDTWALFERQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWTAKVHQPFTATISLLTFIIGYLMTRIAMALPQACVSCYYVCYAQNPDNRLFDSTIKDRLSLMkagrdvvvptprvphrfret
MMQTLNPTNPLRIVINGGRRVTAPRIatpppsqpsrqapriatpppsqpsrprsistsppaptptpqqasrtALNSKKYTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQVEAAsllsislsfsWQKAVRVWPKFMVHFILWssfflslsAGILLICFQKPATDGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDTWALFERQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWTAKVHQPFTATISLLTFIIGYLMTRIAMALPQACVSCYYVCYAQNPDNRLFDSTIKDRLSLMKAGRDVVVPTPRVPHRFRET
************IVI***************************************************************YTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICFQKPATDGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDTWALFERQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWTAKVHQPFTATISLLTFIIGYLMTRIAMALPQACVSCYYVCYAQNPDNRLFDSTIKDRLSLMKAGRDVV*************
*****************************************************************************KYTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICFQKPATDGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDTWALFERQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWTAKVHQPFTATISLLTFIIGYLMTRIAMALPQACVSCYYVCYAQNPDNR******K***SLMKAG*****************
MMQTLNPTNPLRIVINGGRRVTAPRIA**********************************************LNSKKYTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICFQKPATDGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDTWALFERQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWTAKVHQPFTATISLLTFIIGYLMTRIAMALPQACVSCYYVCYAQNPDNRLFDSTIKDRLSLMKAGRDVVVPTPRVPHRFRET
***TLNPTNPLRIVINGGRRVTAPRIATPPPS*********A**************TSPPAPTPTPQQASRTALNSKKYTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICFQKPATDGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDTWALFERQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWTAKVHQPFTATISLLTFIIGYLMTRIAMALPQACVSCYYVCYAQNPDNRLFDSTIKDRLSLMKAGRDVVVPTP*********
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MMQTLNPTNPLRIVINGGRRVTAPRIATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPTPTPQQASRTALNSKKYTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICFQKPATDGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDTWALFERQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWTAKVHQPFTATISLLTFIIGYLMTRIAMALPQACVSCYYVCYAQNPDNRLFDSTIKDRLSLMKAGRDVVVPTPRVPHRFRET
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query509 2.2.26 [Sep-21-2011]
Q869R1555 CTL-like protein DDB_G027 yes no 0.512 0.470 0.242 2e-15
Q4PIP8602 Protein PNS1 OS=Ustilago N/A no 0.412 0.348 0.248 6e-15
Q6BIV4513 Protein PNS1 OS=Debaryomy yes no 0.428 0.424 0.251 9e-15
Q4WYG7537 Protein pns1 OS=Neosartor yes no 0.426 0.404 0.239 2e-13
Q4I8E9538 Protein PNS1 OS=Gibberell yes no 0.375 0.355 0.229 9e-12
Q6CY85553 Protein PNS1 OS=Kluyverom yes no 0.392 0.361 0.25 1e-11
P0CM92551 Protein PNS1 OS=Cryptococ yes no 0.864 0.798 0.223 2e-11
P0CM93551 Protein PNS1 OS=Cryptococ N/A no 0.864 0.798 0.223 2e-11
Q95JW2717 Choline transporter-like N/A no 0.324 0.230 0.278 4e-10
Q5RJI2710 Choline transporter-like yes no 0.328 0.235 0.248 6e-10
>sp|Q869R1|CTLHB_DICDI CTL-like protein DDB_G0274487 OS=Dictyostelium discoideum GN=DDB_G0274487 PE=3 SV=1 Back     alignment and function desciption
 Score = 84.7 bits (208), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 133/284 (46%), Gaps = 23/284 (8%)

Query: 207 QRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNFYFPPL---I 263
            RI F   +L  ++  + ++  + +  Y  +   F+W   W  A       Y   +   I
Sbjct: 259 SRIPFTATLLSNAVAIIKEYPSVIRAGYVSIFINFVWFIVWGSAFARVNMVYTGAIQTCI 318

Query: 264 IIALVLSLAWTTEVMRNVVNLTVCRVISLYYI------LGM-QSSTQFCFQRALTQNLGS 316
            I LV +L W   V++N ++ TV  +++ +Y       +GM  + T    +RALT + GS
Sbjct: 319 NIYLVFTLYWVFHVIKNTLHTTVSGLLATWYFCSGPNGVGMPHNPTLGSARRALTTSFGS 378

Query: 317 ACLGSLFVPTIEALRIVARGL----NLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQ 372
            C GSL +  IE LR +++ +    N++     ++F   +C L ++ SI +  N +A+  
Sbjct: 379 ICFGSLIISLIETLRYLSQMMINNRNVVVKIIGYIF---NCILSMLSSIVQFFNTYAFTH 435

Query: 373 IAAYGKGFVQASQDTWALFERQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWTAKVH 432
           +A YGK F  +++ T+ +FE +    I++ +   +   + G+ +  +  I+ A     + 
Sbjct: 436 VAIYGKSFCDSAKSTFTMFENRLGSTIINDNFVGTTIAIGGLVASLLLSILGAL----IS 491

Query: 433 QPFTATI--SLLTFIIGYLMTRIAMALPQACVSCYYVCYAQNPD 474
            PF  ++    L   IGYL+    + +  +     +VCY   P+
Sbjct: 492 IPFDMSVYGGALALFIGYLVIITNLEVVYSSTISLFVCYVMEPE 535





Dictyostelium discoideum (taxid: 44689)
>sp|Q4PIP8|PNS1_USTMA Protein PNS1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q6BIV4|PNS1_DEBHA Protein PNS1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=PNS1 PE=3 SV=2 Back     alignment and function description
>sp|Q4WYG7|PNS1_ASPFU Protein pns1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pns1 PE=3 SV=1 Back     alignment and function description
>sp|Q4I8E9|PNS1_GIBZE Protein PNS1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q6CY85|PNS1_KLULA Protein PNS1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|P0CM92|PNS1_CRYNJ Protein PNS1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|P0CM93|PNS1_CRYNB Protein PNS1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q95JW2|CTL5_MACFA Choline transporter-like protein 5 OS=Macaca fascicularis GN=SLC44A5 PE=2 SV=1 Back     alignment and function description
>sp|Q5RJI2|CTL5_MOUSE Choline transporter-like protein 5 OS=Mus musculus GN=Slc44a5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query509
255553428568 gd2b, putative [Ricinus communis] gi|223 0.937 0.839 0.758 0.0
356539148550 PREDICTED: protein PNS1-like [Glycine ma 0.960 0.889 0.745 0.0
224104107540 predicted protein [Populus trichocarpa] 0.937 0.883 0.722 0.0
357458339593 Protein PNS1 [Medicago truncatula] gi|35 0.976 0.838 0.724 0.0
449464020560 PREDICTED: CTL-like protein DDB_G0274487 0.966 0.878 0.738 0.0
449531655549 PREDICTED: CTL-like protein DDB_G0274487 0.966 0.896 0.738 0.0
225449991540 PREDICTED: protein PNS1 [Vitis vinifera] 0.933 0.879 0.712 0.0
224059594435 predicted protein [Populus trichocarpa] 0.850 0.995 0.808 0.0
22326789569 Plasma-membrane choline transporter fami 0.962 0.861 0.665 0.0
17064962569 Unknown protein [Arabidopsis thaliana] g 0.962 0.861 0.665 0.0
>gi|255553428|ref|XP_002517755.1| gd2b, putative [Ricinus communis] gi|223543027|gb|EEF44562.1| gd2b, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  790 bits (2039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/506 (75%), Positives = 428/506 (84%), Gaps = 29/506 (5%)

Query: 1   MMQTLNPTNPLRIVINGGRRVTAPRIATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPP 60
           M+Q LNP+NPLRIVIN                     + R+A+P PSQ S PRS      
Sbjct: 90  MLQRLNPSNPLRIVIN--------------------NSTRVASPSPSQTSLPRS------ 123

Query: 61  APTPTPQQASRTALNSKKYTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRK 120
             TP PQ  S T LNS++YTNKISLFLFVLHMILAIGLVGFL+FKGIQGL+ AS+S+KRK
Sbjct: 124 --TPNPQ-PSITTLNSRRYTNKISLFLFVLHMILAIGLVGFLIFKGIQGLLEASDSVKRK 180

Query: 121 EKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICFQ 180
           EKR+LKY LPQVEAA+LLSI+L+  WQKAVRVWP+ MVHFILW SFF+SLSAGILLICFQ
Sbjct: 181 EKRILKYFLPQVEAAALLSITLACVWQKAVRVWPRIMVHFILWCSFFMSLSAGILLICFQ 240

Query: 181 KPATDGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTG 240
           K +TDGVGVC IAFAIGNGLYACWV+QRI F  K+LI SL+PV KF DLN+PTYWMLG G
Sbjct: 241 KASTDGVGVCLIAFAIGNGLYACWVNQRIKFSTKILIKSLEPVPKFGDLNEPTYWMLGLG 300

Query: 241 FLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQS 300
           F+WMS WILAV+GA NF++PPLIIIALVLSLAW TEVMRNVVNLTV RVISLYY+ GMQ+
Sbjct: 301 FVWMSLWILAVVGASNFHYPPLIIIALVLSLAWVTEVMRNVVNLTVSRVISLYYLRGMQA 360

Query: 301 STQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMES 360
           STQFCFQRA+T+NLGSACLGS+FVP+IEALRIVARGLNLLEGEDEFMFSCAHCCL +M S
Sbjct: 361 STQFCFQRAVTRNLGSACLGSVFVPSIEALRIVARGLNLLEGEDEFMFSCAHCCLGVMNS 420

Query: 361 IFRCGNGWAYVQIAAYGKGFVQASQDTWALFERQEMEPIVDSDITSSICFLTGVCSGCIC 420
           IF+ GN WAYVQIAAYGKGFVQASQDTW LF+RQ ME IVDSDITSSICFLTGVCSG IC
Sbjct: 421 IFKNGNSWAYVQIAAYGKGFVQASQDTWELFKRQNMEIIVDSDITSSICFLTGVCSGSIC 480

Query: 421 VIVTAAWTAKVHQPFTATISLLTFIIGYLMTRIAMALPQACVSCYYVCYAQNPDNRLFDS 480
           VI+ AAWT  VH+PFTAT+SLL F IGYLM RIAMA+P ACVSCYYVCYA+NP+NRLFD+
Sbjct: 481 VILVAAWTHTVHEPFTATLSLLAFFIGYLMARIAMAVPHACVSCYYVCYAENPENRLFDT 540

Query: 481 TIKDRLSLMKAGRDVVVPTPRVPHRF 506
           TIKDR   +K+G DVVVPTPRVPHRF
Sbjct: 541 TIKDRQERIKSGHDVVVPTPRVPHRF 566




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539148|ref|XP_003538062.1| PREDICTED: protein PNS1-like [Glycine max] Back     alignment and taxonomy information
>gi|224104107|ref|XP_002313322.1| predicted protein [Populus trichocarpa] gi|222849730|gb|EEE87277.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357458339|ref|XP_003599450.1| Protein PNS1 [Medicago truncatula] gi|355488498|gb|AES69701.1| Protein PNS1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449464020|ref|XP_004149727.1| PREDICTED: CTL-like protein DDB_G0274487-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449531655|ref|XP_004172801.1| PREDICTED: CTL-like protein DDB_G0274487-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225449991|ref|XP_002273748.1| PREDICTED: protein PNS1 [Vitis vinifera] gi|297736338|emb|CBI24976.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224059594|ref|XP_002299924.1| predicted protein [Populus trichocarpa] gi|222847182|gb|EEE84729.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|22326789|ref|NP_196880.2| Plasma-membrane choline transporter family protein [Arabidopsis thaliana] gi|332004555|gb|AED91938.1| Plasma-membrane choline transporter family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|17064962|gb|AAL32635.1| Unknown protein [Arabidopsis thaliana] gi|21387171|gb|AAM47989.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query509
TAIR|locus:2177110569 AT5G13760 "AT5G13760" [Arabido 0.844 0.755 0.706 1.5e-177
TAIR|locus:2079444482 AT3G03700 [Arabidopsis thalian 0.797 0.842 0.308 5.1e-51
TAIR|locus:2100865482 AT3G04440 [Arabidopsis thalian 0.797 0.842 0.308 5.1e-51
TAIR|locus:2175961474 AT5G17830 "AT5G17830" [Arabido 0.636 0.683 0.288 4.7e-32
TAIR|locus:2031235488 AT1G25500 [Arabidopsis thalian 0.552 0.575 0.263 3.5e-23
DICTYBASE|DDB_G0274487555 DDB_G0274487 "Protein PNS1" [D 0.552 0.506 0.240 1.1e-16
ASPGD|ASPL0000039512533 AN10377 [Emericella nidulans ( 0.414 0.395 0.228 2.9e-12
UNIPROTKB|F1P6W3344 SLC44A5 "Uncharacterized prote 0.328 0.485 0.270 6.3e-11
UNIPROTKB|F1S9Q9678 SLC44A5 "Uncharacterized prote 0.328 0.246 0.270 2.7e-10
UNIPROTKB|F1P6W2705 SLC44A5 "Uncharacterized prote 0.328 0.236 0.270 3.7e-10
TAIR|locus:2177110 AT5G13760 "AT5G13760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1658 (588.7 bits), Expect = 1.5e-177, Sum P(2) = 1.5e-177
 Identities = 305/432 (70%), Positives = 358/432 (82%)

Query:    73 ALNSKKYTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQV 132
             +LNS KYTNK  L LF+ H ++AIG VGFLVF+G+QGLI ++ S+KRKEK++L++LLPQV
Sbjct:   133 SLNSTKYTNKFFLLLFIFHKVVAIGFVGFLVFRGVQGLIGSNGSVKRKEKKILRFLLPQV 192

Query:   133 EAAXXXXXXXXXXWQKAVRVWPKFMVHFILWXXXXXXXXAGILLICFQKPATDGVGVCFI 192
             EAA          WQ A R+WP FM+HFILW        +GILL+CFQ PATD VGVC I
Sbjct:   193 EAASLLSIILAFLWQMAFRIWPDFMIHFILWSTFLMSLSSGILLLCFQMPATDAVGVCLI 252

Query:   193 AFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVI 252
             AF+IGNGLYACWV++RI FC K+L+ SL+PVSKFSDLN PTY+ML  GFLWMS WI  VI
Sbjct:   253 AFSIGNGLYACWVTRRIKFCSKILVKSLEPVSKFSDLNLPTYYMLAAGFLWMSMWIFGVI 312

Query:   253 GALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQ 312
             GALNFYFPPL+II LVLSLAWTTEVMRN+VNLTV RVI+LYY+ GMQSST+F FQRAL++
Sbjct:   313 GALNFYFPPLVIIGLVLSLAWTTEVMRNIVNLTVSRVIALYYLRGMQSSTRFSFQRALSR 372

Query:   313 NLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQ 372
             NLGSACLGSLFVPTIEALRI+ARGLNLL+GEDEFMF CA+CCLR+M+ IF  GNGWA+VQ
Sbjct:   373 NLGSACLGSLFVPTIEALRILARGLNLLKGEDEFMFCCANCCLRLMDFIFEHGNGWAFVQ 432

Query:   373 IAAYGKGFVQASQDTWALFERQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWTAKVH 432
             IAAYGKGFV+ASQDTW LFE ++M  IVD+DITSSICFLTG+CSGC+C+IV AAWT  V+
Sbjct:   433 IAAYGKGFVRASQDTWKLFEDEDMVEIVDADITSSICFLTGICSGCVCLIVAAAWTHTVY 492

Query:   433 QPFTATISLLTFIIGYLMTRIAMALPQACVSCYYVCYAQNPDNRLF-DSTIKDRLSLMKA 491
             +PFTATISLL F IGYLMTRI+MALP ACV CYY CYA+NP++R F D  IK R  ++K+
Sbjct:   493 KPFTATISLLAFFIGYLMTRISMALPHACVGCYYTCYAENPESRFFEDKVIKTRQDMIKS 552

Query:   492 GRDVVVPT-PRV 502
             GR  V  T PRV
Sbjct:   553 GRVAVTSTTPRV 564


GO:0003674 "molecular_function" evidence=ND
GO:0005886 "plasma membrane" evidence=ISM
GO:0019344 "cysteine biosynthetic process" evidence=RCA
TAIR|locus:2079444 AT3G03700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100865 AT3G04440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175961 AT5G17830 "AT5G17830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031235 AT1G25500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0274487 DDB_G0274487 "Protein PNS1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000039512 AN10377 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|F1P6W3 SLC44A5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1S9Q9 SLC44A5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1P6W2 SLC44A5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
estExt_fgenesh4_pm.C_LG_IX0499
hypothetical protein (540 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query509
pfam04515327 pfam04515, Choline_transpo, Plasma-membrane cholin 2e-66
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 1e-04
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 1e-04
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 7e-04
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 8e-04
PHA03378991 PHA03378, PHA03378, EBNA-3B; Provisional 0.002
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 0.003
PLN02983274 PLN02983, PLN02983, biotin carboxyl carrier protei 0.003
PRK14965576 PRK14965, PRK14965, DNA polymerase III subunits ga 0.003
COG3147226 COG3147, DedD, Uncharacterized protein conserved i 0.004
>gnl|CDD|218122 pfam04515, Choline_transpo, Plasma-membrane choline transporter Back     alignment and domain information
 Score =  217 bits (554), Expect = 2e-66
 Identities = 80/327 (24%), Positives = 139/327 (42%), Gaps = 35/327 (10%)

Query: 189 VCFIAFAIGNGLYACW---VSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMS 245
           +  I F +   +       + +RI     +L  +   VSK   L             +++
Sbjct: 1   IVAIIFTVLTLILLLLIIFLRKRIPLAIALLKTASDAVSKNPSLLLVPLITFLALAAFIA 60

Query: 246 FWILAVIGALNFY-------------------FPPLIIIALVLSLAWTTEVMRNVVNLTV 286
            WI+  +                             +++ L+  L WT+EV+  V ++T+
Sbjct: 61  LWIVVAVALYTSGDPKYNNGGCPTGGEYKYDSKLIGLLVYLLFGLFWTSEVILAVQHVTI 120

Query: 287 CRVISLYYILGMQ-----SSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLE 341
             V++ +Y  G +       T   F+RALT + GS C GSL V  I+ +RI+   L    
Sbjct: 121 AGVVATWYFAGGKRNMPKFPTLSSFKRALTYSFGSICFGSLIVAIIQFIRILLEYLRRKL 180

Query: 342 GEDE-----FMFSCAHCCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDTWALFERQEM 396
             D+     F+  C  CCL  +E      N  AYV IA YGKGF  +++DTW L +R  +
Sbjct: 181 KGDQNKFAKFLLCCLKCCLWCLEKFVEYLNRNAYVHIAIYGKGFCTSAKDTWELLKRNGL 240

Query: 397 EPIVDSDITSSICFLTGVCSGCICVIVTAAW---TAKVHQPFTATISLLTFIIGYLMTRI 453
             +V+  +   + FL  +    +  ++   W   T      + A    L F+I YL+  +
Sbjct: 241 RALVNDGLGGFVLFLGKLFVSALTGLLAYLWLTYTDNSDLSYYAVPVALAFLISYLIASV 300

Query: 454 AMALPQACVSCYYVCYAQNPDNRLFDS 480
            M++ ++ V   +VC+A++P+    D 
Sbjct: 301 FMSVYESGVDTIFVCFAEDPELLRNDG 327


This family represents a high-affinity plasma-membrane choline transporter in C.elegans which is thought to be rate-limiting for ACh synthesis in cholinergic nerve terminals. Length = 327

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase Back     alignment and domain information
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 509
KOG1362577 consensus Choline transporter-like protein [Lipid 100.0
PF04515334 Choline_transpo: Plasma-membrane choline transport 100.0
KOG19241102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 97.15
KOG19241102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 96.72
PRK153192039 AIDA autotransporter-like protein ShdA; Provisiona 93.61
PRK097521250 adhesin; Provisional 89.59
PHA032473151 large tegument protein UL36; Provisional 88.5
KOG3895488 consensus Synaptic vesicle protein Synapsin [Signa 87.7
COG5178 2365 PRP8 U5 snRNP spliceosome subunit [RNA processing 84.23
COG5178 2365 PRP8 U5 snRNP spliceosome subunit [RNA processing 83.14
>KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism] Back     alignment and domain information
Probab=100.00  E-value=6.8e-65  Score=547.38  Aligned_cols=363  Identities=23%  Similarity=0.436  Sum_probs=293.5

Q ss_pred             hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHHHH--HHHhcc-------CC------c-
Q 010493          121 EKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGIL--LICFQK-------PA------T-  184 (509)
Q Consensus       121 ~~~dl~~~~~~l~~~~~ls~vls~~~l~llr~~~~~~i~~~vw~~iil~~~~~i~--~~~~~~-------~~------~-  184 (509)
                      ...|+..+|+++...++++++++++++.++|.+++    ..+|+.+++.+.+.++  +.|+..       +.      . 
T Consensus       141 i~~~i~~sw~~i~~~~~~~l~~s~i~~~~lr~~~~----~l~~~~~~~~l~~l~~~~~~~~~~y~~~~~~~~~i~~~~~~  216 (577)
T KOG1362|consen  141 IFADILRSWYTILSLLGIALVLSLIFTKLLRFLAA----ILPWILIILVLVGLLSGIWFCWFLYAILRNTKVTIGFTSSL  216 (577)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccceeecchHH
Confidence            66788899999999999999999999999996666    4477777666554433  233211       10      0 


Q ss_pred             -----------hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 010493          185 -----------DGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIG  253 (509)
Q Consensus       185 -----------~~~~i~~~i~ai~~~ly~~~~r~RI~~ai~ilk~A~~~i~~~p~l~~~~~~~~~i~~~~~~~W~~~~iG  253 (509)
                                 +..+++.+++.++.++|++++|+||+++++++|+|+|++.+.|+++++|..++++.++|+++|+...++
T Consensus       217 ~~~~~~~~~~l~~~~Iv~~v~~vv~~l~~i~lr~RI~~a~all~ea~k~i~~~p~~~~~p~~~~~v~~~~i~~wv~~~~~  296 (577)
T KOG1362|consen  217 FVAVGNQLTLLDAVGIVLTVISVVLVLYIIFLRKRIPLAIALLKEATKAIGSLPSTLFPPALTFFVLLLFISLWVFVALF  296 (577)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       136788888888887888999999999999999999999999999999999999999999999988762


Q ss_pred             c--cc--------ccCch----HHHHHHHHH-HHHHHHHHhhcccccccceEEEEeecCCC-----ccHHHHHHHHHhhh
Q 010493          254 A--LN--------FYFPP----LIIIALVLS-LAWTTEVMRNVVNLTVCRVISLYYILGMQ-----SSTQFCFQRALTQN  313 (509)
Q Consensus       254 ~--~~--------~~~~~----~~~~~~lf~-~~Wt~~~i~~v~~~tvAg~va~WYF~~~~-----~~v~~S~~ra~~~s  313 (509)
                      -  .+        +.+++    .+++++++. ++|++||+.|++|+++||++++|||++++     .|+..|++|+++||
T Consensus       297 l~t~~~~~~gg~~~~~~~~~~~~~~~~~vv~~l~Wt~~fi~a~q~~vISgava~~Yf~~~~~~iP~~p~~~al~ra~~yh  376 (577)
T KOG1362|consen  297 LVTSGPNSEGGCACTYSGGSLRILFWLLVVGSLIWTSEFILALQQVVISGAVASWYFARDKQDIPSSPLFSALRRALRYH  376 (577)
T ss_pred             HhhcccccCCCceeeccCCcchhHhHHHHHHHHHHHHHHHHHHHHHhhhhhhheeeEecCCCCCCCchHHHHHHHHHHHh
Confidence            2  11        22322    356667666 99999999999999999999999997443     68999999999999


Q ss_pred             hhhHHhhhhHHHHHHHHHHHHHHhhh-ccCC----cchhHHHHHHHHHHHHHHHHhchhhHHHHHHhcCCchhHhHHHHH
Q 010493          314 LGSACLGSLFVPTIEALRIVARGLNL-LEGE----DEFMFSCAHCCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDTW  388 (509)
Q Consensus       314 fGSIc~GSLIvaii~~lR~i~~~l~~-~~~~----~~~l~~c~~C~l~~le~~i~~~N~~Ayi~vAi~G~~F~~Sak~a~  388 (509)
                      +||+|+|||++++|+++|.++|++++ +++.    .++++||+.||+||+|+++||+|||||+|+|||||+||+||||||
T Consensus       377 lGSi~~GSliv~iV~i~R~iL~~i~~~lk~~~~~~~~~~~~c~~Cc~w~le~~i~~lNrnAYi~iAiyGk~Fc~SAkda~  456 (577)
T KOG1362|consen  377 LGSICFGSLLVALVRILRVILRYIRHKLKGSQNAAARILLMCLKCCFWCLEKFIKFLNRNAYVMIAIYGKNFCTSAKDAW  456 (577)
T ss_pred             ccchhhhhhHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhcCcchheeeeccCccchHHHHHHH
Confidence            99999999999999999999999986 4443    369999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCcceecccchHHHHHHHhHHHHHHHHHHHHHhhhccCCC--chhHHHHHHHHHH-HHHHHhhhhhHHHHHHHH
Q 010493          389 ALFERQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWTAKVHQP--FTATISLLTFIIG-YLMTRIAMALPQACVSCY  465 (509)
Q Consensus       389 ~L~~~n~~~alv~~~l~~~vlfL~~l~vg~i~~~~~~~~~~~~~~~--~~~~~~l~~~~i~-y~i~~~f~~v~~~~VdTi  465 (509)
                      +|++||..+....|.++++++|+|++++ ++++.++..|....++.  +++.+.+++++++ |+|+++|++|++++|||+
T Consensus       457 ~ll~~Nv~~vv~~d~vs~~llflgk~l~-~~~~g~~g~~~l~~~~~~l~~y~V~lla~iig~ylIa~~f~~v~~m~Vdtl  535 (577)
T KOG1362|consen  457 ELLRRNVLRVVDVDLVSDFLLFLGKLLG-AIGSGVAGIWLLIGRKDVLYYYVVPLLAFIIGAYLIAHIFFSVLEMCVDTL  535 (577)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcceeEeHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999994444444446666667766654 45555554544444444  5566777888888 999999999999999999


Q ss_pred             hHHhcccCCCCcccCCchhHHHH
Q 010493          466 YVCYAQNPDNRLFDSTIKDRLSL  488 (509)
Q Consensus       466 fvCyaeDpe~~~~~~~~p~~~~~  488 (509)
                      |+||+||||.+..+.+.|+..+|
T Consensus       536 flCf~eD~e~n~gs~~~p~~~~~  558 (577)
T KOG1362|consen  536 FLCFAEDPESNDGSPEKPQFMSE  558 (577)
T ss_pred             hheeEecHhhcCCCCCcceeeeH
Confidence            99999999974444445553333



>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [] Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional Back     alignment and domain information
>PRK09752 adhesin; Provisional Back     alignment and domain information
>PHA03247 large tegument protein UL36; Provisional Back     alignment and domain information
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00