Citrus Sinensis ID: 010509
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 508 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SZR9 | 638 | ABC transporter G family | yes | no | 0.614 | 0.489 | 0.628 | 1e-110 | |
| Q9C6W5 | 648 | ABC transporter G family | no | no | 0.572 | 0.449 | 0.589 | 2e-95 | |
| Q7XA72 | 672 | ABC transporter G family | no | no | 0.704 | 0.532 | 0.5 | 7e-93 | |
| Q9FT51 | 737 | ABC transporter G family | no | no | 0.545 | 0.375 | 0.543 | 9e-80 | |
| Q84TH5 | 662 | ABC transporter G family | no | no | 0.555 | 0.425 | 0.486 | 8e-79 | |
| Q9LK50 | 685 | ABC transporter G family | no | no | 0.604 | 0.448 | 0.464 | 1e-76 | |
| Q93YS4 | 751 | ABC transporter G family | no | no | 0.515 | 0.348 | 0.527 | 7e-76 | |
| Q8MIB3 | 656 | ATP-binding cassette sub- | yes | no | 0.704 | 0.545 | 0.370 | 3e-57 | |
| Q5MB13 | 654 | ATP-binding cassette sub- | yes | no | 0.688 | 0.535 | 0.357 | 9e-56 | |
| Q9UNQ0 | 655 | ATP-binding cassette sub- | yes | no | 0.690 | 0.535 | 0.357 | 1e-55 |
| >sp|Q9SZR9|AB9G_ARATH ABC transporter G family member 9 OS=Arabidopsis thaliana GN=ABCG9 PE=3 SV=2 | Back alignment and function desciption |
|---|
Score = 397 bits (1021), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/320 (62%), Positives = 253/320 (79%), Gaps = 8/320 (2%)
Query: 7 VANDINEAQTDQKEDQLLEASDVFTRAKHPVTLKFEDIVYKIKMK--KGFYGSNKKIEEK 64
V+ D+ +D+ L S +F +A +PVTLKFE++VY +K+K +G +G N K EE+
Sbjct: 6 VSMDVETPIAKTNDDRSLPFS-IFKKANNPVTLKFENLVYTVKLKDSQGCFGKNDKTEER 64
Query: 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG----RINGRITYNGKPFSNQMT 120
ILKG+TG+VKPGE+LAMLGPSG GKT+LLTALGGR+G ++ G I+YN KP S +
Sbjct: 65 TILKGLTGIVKPGEILAMLGPSGSGKTSLLTALGGRVGEGKGKLTGNISYNNKPLSKAVK 124
Query: 121 RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLI 180
R TGFVTQ+D L P LTVTET+VFTALL+LPNSF ++EKIK A+AVMTELGL CK+++I
Sbjct: 125 RTTGFVTQDDALYPNLTVTETLVFTALLRLPNSFKKQEKIKQAKAVMTELGLDRCKDTII 184
Query: 181 GGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTI 240
GGP RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDST AQ+I+SIL +LA GGRT+
Sbjct: 185 GGPFLRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTTAQRIVSILWELARGGRTV 244
Query: 241 VMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNYFASIGYCPSVPT-NPSDFLLDL 299
V TIHQPS+ L+YMF K+LLLSEG P+Y G S AM+YFAS+GY P V NPSDFLLD+
Sbjct: 245 VTTIHQPSSRLFYMFDKLLLLSEGNPVYFGLGSNAMDYFASVGYSPLVERINPSDFLLDI 304
Query: 300 ASGMPSNGSWKEQALEQKML 319
A+G+ S+ S + +A++ ++
Sbjct: 305 ANGVGSDESQRPEAMKAALV 324
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C6W5|AB14G_ARATH ABC transporter G family member 14 OS=Arabidopsis thaliana GN=ABCG14 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 350 bits (898), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 174/295 (58%), Positives = 229/295 (77%), Gaps = 4/295 (1%)
Query: 35 HPVTLKFEDIVYKIKMKKG--FYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTT 92
+P+TLKFE++VYK+K+++ GS K +EK IL GITGMV PGE LAMLGPSG GKTT
Sbjct: 49 YPITLKFEEVVYKVKIEQTSQCMGSWKS-KEKTILNGITGMVCPGEFLAMLGPSGSGKTT 107
Query: 93 LLTALGGRLGR-INGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP 151
LL+ALGGRL + +G++ YNG+PFS + R TGFV Q+DVL P+LTV ET+ FTALL+LP
Sbjct: 108 LLSALGGRLSKTFSGKVMYNGQPFSGCIKRRTGFVAQDDVLYPHLTVWETLFFTALLRLP 167
Query: 152 NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFL 211
+S T EK + + V+ ELGL+ C NS+IGGPL RG+SGGE+KRVSIGQE+LINPSLL L
Sbjct: 168 SSLTRDEKAEHVDRVIAELGLNRCTNSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLL 227
Query: 212 DEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271
DEPTSGLDST A +I++ + +LA+GGRT+V TIHQPS+ +Y+MF KV+LLSEG P+Y G
Sbjct: 228 DEPTSGLDSTTAHRIVTTIKRLASGGRTVVTTIHQPSSRIYHMFDKVVLLSEGSPIYYGA 287
Query: 272 ASGAMNYFASIGYCPSVPTNPSDFLLDLASGMPSNGSWKEQALEQKMLEKEIPSG 326
AS A+ YF+S+G+ S+ NP+D LLDLA+G+P + + EQK +++ + S
Sbjct: 288 ASSAVEYFSSLGFSTSLTVNPADLLLDLANGIPPDTQKETSEQEQKTVKETLVSA 342
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XA72|AB21G_ARATH ABC transporter G family member 21 OS=Arabidopsis thaliana GN=ABCG21 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 341 bits (875), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 184/368 (50%), Positives = 252/368 (68%), Gaps = 10/368 (2%)
Query: 27 SDVFTRAKHPVTLKFEDIVYKIKMKKG----FYGSNKKIEEKAILKGITGMVKPGEMLAM 82
S V ++ P+ LKFE++ Y IK + G ++GS + + +LK ++G+VKPGE+LAM
Sbjct: 56 SSVLRQSLRPIILKFEELTYSIKSQTGKGSYWFGSQEPKPNRLVLKCVSGIVKPGELLAM 115
Query: 83 LGPSGCGKTTLLTALGGRL-GRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTET 141
LGPSG GKTTL+TAL GRL G+++G ++YNG+PF++ + R TGFVTQ+DVL P+LTV ET
Sbjct: 116 LGPSGSGKTTLVTALAGRLQGKLSGTVSYNGEPFTSSVKRKTGFVTQDDVLYPHLTVMET 175
Query: 142 MVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQE 201
+ +TALL+LP T KEK++ E V+++LGL+ C NS+IGG L RG+SGGERKRVSIGQE
Sbjct: 176 LTYTALLRLPKELTRKEKLEQVEMVVSDLGLTRCCNSVIGGGLIRGISGGERKRVSIGQE 235
Query: 202 ILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261
+L+NPSLL LDEPTSGLDST A +I++ L LA GGRT+V TIHQPS+ LY MF KVL+L
Sbjct: 236 MLVNPSLLLLDEPTSGLDSTTAARIVATLRSLARGGRTVVTTIHQPSSRLYRMFDKVLVL 295
Query: 262 SEGYPLYSGEASGAMNYFASIGYCP-SVPTNPSDFLLDLASGMPSNGSWKEQALEQKMLE 320
SEG P+YSG++ M YF SIGY P S NP+DF+LDLA+G+ S+ +Q L+
Sbjct: 296 SEGCPIYSGDSGRVMEYFGSIGYQPGSSFVNPADFVLDLANGITSDTKQYDQIETNGRLD 355
Query: 321 KEIPSGMYRLSAYFMSRIISDL--PIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLF 378
+ + S +S +L P+K + F K +N + T + + F
Sbjct: 356 RLEEQNSVKQS--LISSYKKNLYPPLKEEVSRTFPQDQTNARLRKKAITNRWPTSWWMQF 413
Query: 379 SVLVSQGL 386
SVL+ +GL
Sbjct: 414 SVLLKRGL 421
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FT51|AB27G_ARATH ABC transporter G family member 27 OS=Arabidopsis thaliana GN=ABCG27 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 298 bits (762), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 155/285 (54%), Positives = 205/285 (71%), Gaps = 8/285 (2%)
Query: 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLT 95
P+ LKF DI YK+ KG S+ EK+IL GI+G PGE+LA++GPSG GKTTLL
Sbjct: 142 PIYLKFIDITYKVT-TKGMTSSS----EKSILNGISGSAYPGELLALMGPSGSGKTTLLN 196
Query: 96 ALGGRLGRIN--GRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNS 153
ALGGR + N G ++YN KP+S + GFVTQ+DVL P+LTV ET+ +TALL+LP +
Sbjct: 197 ALGGRFNQQNIGGSVSYNDKPYSKHLKTRIGFVTQDDVLFPHLTVKETLTYTALLRLPKT 256
Query: 154 FTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDE 213
TE+EK + A +V+ ELGL C++++IGG RGVSGGERKRV IG EI+ NPSLL LDE
Sbjct: 257 LTEQEKEQRAASVIQELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIMTNPSLLLLDE 316
Query: 214 PTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273
PTS LDST A +I+ +L +A G+TIV TIHQPS+ L++ F K+++LS G LY G+AS
Sbjct: 317 PTSSLDSTTALKIVQMLHCIAKAGKTIVTTIHQPSSRLFHRFDKLVVLSRGSLLYFGKAS 376
Query: 274 GAMNYFASIGYCPSVPTNPSDFLLDLASGMPSNGSWKEQALEQKM 318
AM+YF+SIG P + NP++FLLDL +G ++ S AL++KM
Sbjct: 377 EAMSYFSSIGCSPLLAMNPAEFLLDLVNGNMNDIS-VPSALKEKM 420
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84TH5|AB25G_ARATH ABC transporter G family member 25 OS=Arabidopsis thaliana GN=ABCG25 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 295 bits (754), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 149/306 (48%), Positives = 207/306 (67%), Gaps = 24/306 (7%)
Query: 17 DQKEDQLLEASDVFTRAKHPVTLKFEDIVYKIK----------------MKKGFYGSNKK 60
D +E + L +S F P+TLKF D+ Y++K +K+ +
Sbjct: 23 DPREPRSLLSSSCF-----PITLKFVDVCYRVKIHGMSNDSCNIKKLLGLKQKPSDETRS 77
Query: 61 IEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL--GRINGRITYNGKPFSNQ 118
EE+ IL G+TGM+ PGE +A+LGPSG GK+TLL A+ GRL + G+I N + Q
Sbjct: 78 TEERTILSGVTGMISPGEFMAVLGPSGSGKSTLLNAVAGRLHGSNLTGKILINDGKITKQ 137
Query: 119 MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNS 178
+ TGFV Q+D+L P+LTV ET+VF ALL+LP S T K++ AE+V++ELGL++C+N+
Sbjct: 138 TLKRTGFVAQDDLLYPHLTVRETLVFVALLRLPRSLTRDVKLRAAESVISELGLTKCENT 197
Query: 179 LIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-G 237
++G RG+SGGERKRVSI E+LINPSLL LDEPTSGLD+T A +++ L LA+G G
Sbjct: 198 VVGNTFIRGISGGERKRVSIAHELLINPSLLVLDEPTSGLDATAALRLVQTLAGLAHGKG 257
Query: 238 RTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNYFASIGYCPSVPTNPSDFLL 297
+T+V +IHQPS+ ++ MF VLLLSEG L+ G+ AM YF S+G+ P+ P NP+DFLL
Sbjct: 258 KTVVTSIHQPSSRVFQMFDTVLLLSEGKCLFVGKGRDAMAYFESVGFSPAFPMNPADFLL 317
Query: 298 DLASGM 303
DLA+G+
Sbjct: 318 DLANGV 323
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LK50|AB26G_ARATH ABC transporter G family member 26 OS=Arabidopsis thaliana GN=ABCG26 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 287 bits (734), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 151/325 (46%), Positives = 210/325 (64%), Gaps = 18/325 (5%)
Query: 36 PVTLKFEDIVYKIK-------------MKKGFYGSNKKIE-EKAILKGITGMVKPGEMLA 81
P+ LKFED+ YK++ + K +N + K ILKGITG PGE+LA
Sbjct: 62 PIFLKFEDVEYKVRNSHASSANLVKTMVSKVVTHTNPDPDGYKHILKGITGSTGPGEILA 121
Query: 82 MLGPSGCGKTTLLTALGGRL-GRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTE 140
++GPSG GKTTLL +GGRL + G++TYN P+S + R GFVTQ+DVL P LTV E
Sbjct: 122 LMGPSGSGKTTLLKIMGGRLTDNVKGKLTYNDIPYSPSVKRRIGFVTQDDVLLPQLTVEE 181
Query: 141 TMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQ 200
T+ F A L+LP+S ++++K E ++ ELGL C+ + +GG +G+SGGERKR SI
Sbjct: 182 TLAFAAFLRLPSSMSKEQKYAKIEMIIKELGLERCRRTRVGGGFVKGISGGERKRASIAY 241
Query: 201 EILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLL 260
EIL++PSLL LDEPTSGLDST A ++L IL +A GRT++ TIHQPS+ +++MF K+LL
Sbjct: 242 EILVDPSLLLLDEPTSGLDSTSATKLLHILQGVAKAGRTVITTIHQPSSRMFHMFDKLLL 301
Query: 261 LSEGYPLYSGEASGAMNYFASIGYCPSVPTNPSDFLLDLASGMPSNGSWKEQALEQKMLE 320
+SEG+P + G+A +M YF+S+ P + NP++FLLDLA+G S+ S ++ L K +
Sbjct: 302 ISEGHPAFYGKARESMEYFSSLRILPEIAMNPAEFLLDLATGQVSDISLPDELLAAKTAQ 361
Query: 321 KEIPSGMYRLSAYFMSRIISDLPIK 345
P L Y R +DL K
Sbjct: 362 ---PDSEEVLLKYLKQRYKTDLEPK 383
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93YS4|AB22G_ARATH ABC transporter G family member 22 OS=Arabidopsis thaliana GN=ABCG22 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (728), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 142/269 (52%), Positives = 192/269 (71%), Gaps = 7/269 (2%)
Query: 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLT 95
P+ LKF D+ YK+ +KK EK IL GI+G V PGE+LA++GPSG GKTTLL+
Sbjct: 154 PIFLKFRDVTYKVVIKK-----LTSSVEKEILTGISGSVNPGEVLALMGPSGSGKTTLLS 208
Query: 96 ALGGRLGR--INGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNS 153
L GR+ + G +TYN KP+S + GFVTQ+DVL P+LTV ET+ + A L+LP +
Sbjct: 209 LLAGRISQSSTGGSVTYNDKPYSKYLKSKIGFVTQDDVLFPHLTVKETLTYAARLRLPKT 268
Query: 154 FTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDE 213
T ++K + A V+ ELGL C++++IGG RGVSGGERKRVSIG EI+INPSLL LDE
Sbjct: 269 LTREQKKQRALDVIQELGLERCQDTMIGGAFVRGVSGGERKRVSIGNEIIINPSLLLLDE 328
Query: 214 PTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273
PTSGLDST A + + +L +A G+T++ TIHQPS+ L++ F K++LL G LY G++S
Sbjct: 329 PTSGLDSTTALRTILMLHDIAEAGKTVITTIHQPSSRLFHRFDKLILLGRGSLLYFGKSS 388
Query: 274 GAMNYFASIGYCPSVPTNPSDFLLDLASG 302
A++YF+SIG P + NP++FLLDLA+G
Sbjct: 389 EALDYFSSIGCSPLIAMNPAEFLLDLANG 417
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8MIB3|ABCG2_PIG ATP-binding cassette sub-family G member 2 OS=Sus scrofa GN=ABCG2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 223 bits (567), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 143/386 (37%), Positives = 219/386 (56%), Gaps = 28/386 (7%)
Query: 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG 98
L F DI Y++K+K GF K +E K IL I G++KPG + A+LGP+G GK++LL L
Sbjct: 37 LSFHDICYRVKVKSGFLFCRKTVE-KEILTNINGIMKPG-LNAILGPTGGGKSSLLDVLA 94
Query: 99 GRLGR--INGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTE 156
R ++G + NG P N+G+V Q+DV+ LTV E + F+A L+LP + T
Sbjct: 95 ARKDPHGLSGDVLINGAPRPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTN 154
Query: 157 KEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTS 216
EK + V+ ELGL + +S +G RGVSGGERKR SI E++ +PS+LFLDEPT+
Sbjct: 155 HEKNERINMVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIAMELITDPSILFLDEPTT 214
Query: 217 GLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAM 276
GLDS+ A +L +L +++ GRTI+ +IHQP ++ +F + LL+ G ++ G A A+
Sbjct: 215 GLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAREAL 274
Query: 277 NYFASIGYCPSVPTNPSDFLLDLASG-----MPSNGSWKEQALE-QKMLEKEIPSGMYRL 330
YFASIGY NP+DF LD+ +G + S E A E ++ EK+ P + +L
Sbjct: 275 GYFASIGYNCEPYNNPADFFLDVINGDSSAVVLSRADRDEGAQEPEEPPEKDTPL-IDKL 333
Query: 331 SAYFM-SRIISDLPIKL---------VIPTVFVTITY---WMAGLKPTASNFFETLF--- 374
+A++ S D ++L +V+ +TY + L+ + F+ L
Sbjct: 334 AAFYTNSSFFKDTKVELDQFSGGRKKKKSSVYKEVTYTTSFCHQLRWISRRSFKNLLGNP 393
Query: 375 -VLLFSVLVSQGLGLAIGAMVMEQKS 399
+ ++V+ LGL IGA+ + K+
Sbjct: 394 QASVAQIIVTIILGLVIGAIFYDLKN 419
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Sus scrofa (taxid: 9823) |
| >sp|Q5MB13|ABCG2_MACMU ATP-binding cassette sub-family G member 2 OS=Macaca mulatta GN=ABCG2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (555), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 136/380 (35%), Positives = 211/380 (55%), Gaps = 30/380 (7%)
Query: 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG 98
L F +I Y++K+K GF K +E K IL I G++KPG + A+LGP+G GK++LL L
Sbjct: 37 LSFHNICYRVKVKSGFLPGRKPVE-KEILSNINGIMKPG-LNAILGPTGGGKSSLLDVLA 94
Query: 99 GRL--GRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTE 156
R ++G + NG N+G+V Q+DV+ LTV E + F+A L+LP + T
Sbjct: 95 ARKDPSGLSGDVLINGALRPTNFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTN 154
Query: 157 KEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTS 216
EK + V+ ELGL + +S +G RGVSGGERKR SIG E++ +PS+LFLDEPT+
Sbjct: 155 HEKNERINRVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIGMELITDPSILFLDEPTT 214
Query: 217 GLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAM 276
GLDS+ A +L +L +++ GRTI+ +IHQP ++ +F + LL+ G ++ G A A+
Sbjct: 215 GLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEAL 274
Query: 277 NYFASIGYCPSVPTNPSDFLLDLASGMPS----------------NGSWKEQALEQKMLE 320
YF S GY NP+DF LD+ +G + S +++ L +K+ E
Sbjct: 275 GYFESAGYHCEAYNNPADFFLDIINGDSTAVALNREEDFKATEIIEPSKRDKPLVEKLAE 334
Query: 321 KEIPSGMYRLSAYFMSRIISDLPIKLVIPTVFVTITY---WMAGLKPTASNFFETLF--- 374
+ S Y+ + + ++ K+ TVF I+Y + L+ + F+ L
Sbjct: 335 IYVDSSFYKETKAELHQLSGGEKKKI---TVFKEISYTTSFCHQLRWVSKRSFKNLLGNP 391
Query: 375 -VLLFSVLVSQGLGLAIGAM 393
+ ++V+ LGL IGA+
Sbjct: 392 QASIAQIIVTVILGLVIGAI 411
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux (By similarity). When overexpressed, the transfected cells become resistant to mitoxantrone. Overexpression in bone marrow stem cells does not interfere with hematopoietic stem cell maturation and increases the number of SP cells. Macaca mulatta (taxid: 9544) |
| >sp|Q9UNQ0|ABCG2_HUMAN ATP-binding cassette sub-family G member 2 OS=Homo sapiens GN=ABCG2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 218 bits (554), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 136/380 (35%), Positives = 211/380 (55%), Gaps = 29/380 (7%)
Query: 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG 98
L F +I Y++K+K GF K +E K IL I G++KPG + A+LGP+G GK++LL L
Sbjct: 37 LSFHNICYRVKLKSGFLPCRKPVE-KEILSNINGIMKPG-LNAILGPTGGGKSSLLDVLA 94
Query: 99 GRL--GRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTE 156
R ++G + NG P N+G+V Q+DV+ LTV E + F+A L+L + T
Sbjct: 95 ARKDPSGLSGDVLINGAPRPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLATTMTN 154
Query: 157 KEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTS 216
EK + V+ ELGL + +S +G RGVSGGERKR SIG E++ +PS+LFLDEPT+
Sbjct: 155 HEKNERINRVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIGMELITDPSILFLDEPTT 214
Query: 217 GLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAM 276
GLDS+ A +L +L +++ GRTI+ +IHQP ++ +F + LL+ G ++ G A A+
Sbjct: 215 GLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEAL 274
Query: 277 NYFASIGYCPSVPTNPSDFLLDLASGMPS----------------NGSWKEQALEQKMLE 320
YF S GY NP+DF LD+ +G + S +++ L +K+ E
Sbjct: 275 GYFESAGYHCEAYNNPADFFLDIINGDSTAVALNREEDFKATEIIEPSKQDKPLIEKLAE 334
Query: 321 KEIPSGMYRLSAYFMSRIISDLPIKLVIPTVFVTITY---WMAGLKPTASNFFETLF--- 374
+ S Y+ + + ++ K + TVF I+Y + L+ + F+ L
Sbjct: 335 IYVNSSFYKETKAELHQLSGGEKKKKI--TVFKEISYTTSFCHQLRWVSKRSFKNLLGNP 392
Query: 375 -VLLFSVLVSQGLGLAIGAM 393
+ ++V+ LGL IGA+
Sbjct: 393 QASIAQIIVTVVLGLVIGAI 412
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Appears to play a major role in the multidrug resistance phenotype of several cancer cell lines. When overexpressed, the transfected cells become resistant to mitoxantrone, daunorubicin and doxorubicin, display diminished intracellular accumulation of daunorubicin, and manifest an ATP-dependent increase in the efflux of rhodamine 123. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 508 | ||||||
| 356514780 | 624 | PREDICTED: ABC transporter G family memb | 0.604 | 0.491 | 0.656 | 1e-110 | |
| 334186960 | 638 | ABC transporter G family member 9 [Arabi | 0.614 | 0.489 | 0.628 | 1e-108 | |
| 356546890 | 602 | PREDICTED: ABC transporter G family memb | 0.557 | 0.470 | 0.663 | 1e-105 | |
| 297799240 | 639 | abc transporter family protein [Arabidop | 0.614 | 0.488 | 0.619 | 1e-105 | |
| 255586556 | 632 | ATP-binding cassette transporter, putati | 0.606 | 0.487 | 0.628 | 1e-102 | |
| 302143054 | 574 | unnamed protein product [Vitis vinifera] | 0.555 | 0.491 | 0.692 | 1e-102 | |
| 225461363 | 623 | PREDICTED: ABC transporter G family memb | 0.555 | 0.452 | 0.692 | 1e-102 | |
| 224115010 | 619 | white-brown-complex ABC transporter fami | 0.551 | 0.452 | 0.702 | 1e-101 | |
| 147802534 | 603 | hypothetical protein VITISV_007841 [Viti | 0.547 | 0.461 | 0.695 | 1e-101 | |
| 224128209 | 619 | white-brown-complex ABC transporter fami | 0.570 | 0.468 | 0.675 | 1e-100 |
| >gi|356514780|ref|XP_003526081.1| PREDICTED: ABC transporter G family member 9-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/309 (65%), Positives = 248/309 (80%), Gaps = 2/309 (0%)
Query: 13 EAQTDQKEDQLLEASDVFTRAKHPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITG 72
E+QT K E SD+F PVTLKF D++YKIK K + N K EEK IL G+TG
Sbjct: 5 ESQTSYKATVQEEESDIFLTRNSPVTLKFHDVIYKIKTTKWGFLKNTKAEEKVILNGVTG 64
Query: 73 MVKPGEMLAMLGPSGCGKTTLLTALGGRLG-RINGRITYNGKPFSNQMTRNTGFVTQEDV 131
M + GE+LAMLGPSG GKTTLL ALGGRLG +++G ITYNGK FSN M RNTGFVTQ+D+
Sbjct: 65 MAQSGEILAMLGPSGSGKTTLLAALGGRLGGKLHGSITYNGKAFSNVMKRNTGFVTQDDI 124
Query: 132 LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191
L P+LTV ET+VFTALL+LP SFT KEKI A++VM +LGL++CK+S+IGGPL RG+SGG
Sbjct: 125 LYPHLTVVETVVFTALLRLPKSFTTKEKIVHAKSVMAQLGLTKCKDSIIGGPLLRGISGG 184
Query: 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNML 251
ERKRVSIGQE+LINPSLLFLDEPTSGLDSTIA++I+S L +LANGGRT+VMTIHQPS+ +
Sbjct: 185 ERKRVSIGQEMLINPSLLFLDEPTSGLDSTIAKRIVSTLWELANGGRTVVMTIHQPSSRM 244
Query: 252 YYMFHKVLLLSEGYPLYSGEASGAMNYFASIGYCP-SVPTNPSDFLLDLASGMPSNGSWK 310
Y MFHKVLLLSEG LY G+ S AM YF+SIGY P ++ NPSDFLLDL++G+ ++ S +
Sbjct: 245 YCMFHKVLLLSEGNLLYFGKGSKAMEYFSSIGYAPMTMAMNPSDFLLDLSNGVYTDQSNE 304
Query: 311 EQALEQKML 319
+ AL ++ L
Sbjct: 305 DHALNKRKL 313
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334186960|ref|NP_194472.3| ABC transporter G family member 9 [Arabidopsis thaliana] gi|378405146|sp|Q9SZR9.2|AB9G_ARATH RecName: Full=ABC transporter G family member 9; Short=ABC transporter ABCG.9; Short=AtABCG9; AltName: Full=Probable white-brown complex homolog protein 9; Short=AtWBC9 gi|332659938|gb|AEE85338.1| ABC transporter G family member 9 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/320 (62%), Positives = 253/320 (79%), Gaps = 8/320 (2%)
Query: 7 VANDINEAQTDQKEDQLLEASDVFTRAKHPVTLKFEDIVYKIKMK--KGFYGSNKKIEEK 64
V+ D+ +D+ L S +F +A +PVTLKFE++VY +K+K +G +G N K EE+
Sbjct: 6 VSMDVETPIAKTNDDRSLPFS-IFKKANNPVTLKFENLVYTVKLKDSQGCFGKNDKTEER 64
Query: 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG----RINGRITYNGKPFSNQMT 120
ILKG+TG+VKPGE+LAMLGPSG GKT+LLTALGGR+G ++ G I+YN KP S +
Sbjct: 65 TILKGLTGIVKPGEILAMLGPSGSGKTSLLTALGGRVGEGKGKLTGNISYNNKPLSKAVK 124
Query: 121 RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLI 180
R TGFVTQ+D L P LTVTET+VFTALL+LPNSF ++EKIK A+AVMTELGL CK+++I
Sbjct: 125 RTTGFVTQDDALYPNLTVTETLVFTALLRLPNSFKKQEKIKQAKAVMTELGLDRCKDTII 184
Query: 181 GGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTI 240
GGP RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDST AQ+I+SIL +LA GGRT+
Sbjct: 185 GGPFLRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTTAQRIVSILWELARGGRTV 244
Query: 241 VMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNYFASIGYCPSVPT-NPSDFLLDL 299
V TIHQPS+ L+YMF K+LLLSEG P+Y G S AM+YFAS+GY P V NPSDFLLD+
Sbjct: 245 VTTIHQPSSRLFYMFDKLLLLSEGNPVYFGLGSNAMDYFASVGYSPLVERINPSDFLLDI 304
Query: 300 ASGMPSNGSWKEQALEQKML 319
A+G+ S+ S + +A++ ++
Sbjct: 305 ANGVGSDESQRPEAMKAALV 324
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356546890|ref|XP_003541854.1| PREDICTED: ABC transporter G family member 9-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 189/285 (66%), Positives = 242/285 (84%), Gaps = 2/285 (0%)
Query: 37 VTLKFEDIVYKIKMKKG-FYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLT 95
+T++F+++VYKIK KKG + NK+ EEK ILKG+ G+V+PGEMLAMLGPSG GKTTLLT
Sbjct: 5 ITVQFDNVVYKIKTKKGGVFVKNKETEEKEILKGVKGVVEPGEMLAMLGPSGSGKTTLLT 64
Query: 96 ALGGRL-GRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSF 154
ALGGRL G++ G ITYNG+ FSN M RNTGFVTQ+DVL P+LTVTET+VFTALL+LPN+
Sbjct: 65 ALGGRLRGKLYGSITYNGEAFSNSMKRNTGFVTQDDVLYPHLTVTETLVFTALLRLPNTI 124
Query: 155 TEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEP 214
+++EK+K A+ V+ +LGL++CK+S++G P RGVSGGERKRVSIGQE+LINPSLLFLDEP
Sbjct: 125 SKEEKVKKAKDVIDQLGLTKCKDSIVGSPFLRGVSGGERKRVSIGQEMLINPSLLFLDEP 184
Query: 215 TSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274
TSGLDST AQ+I+S L +LA GGRTIVMTIHQPS+ LYY+FHKVLLLSEG LY G+ S
Sbjct: 185 TSGLDSTTAQRIVSTLWELACGGRTIVMTIHQPSSRLYYLFHKVLLLSEGNSLYFGKGSE 244
Query: 275 AMNYFASIGYCPSVPTNPSDFLLDLASGMPSNGSWKEQALEQKML 319
A+ YF++IGY P++ NP+DFLLDLA+G+ ++ S + A++++ L
Sbjct: 245 AIEYFSNIGYAPALAMNPADFLLDLANGIYTDESNTDHAIDKQKL 289
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297799240|ref|XP_002867504.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297313340|gb|EFH43763.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 199/321 (61%), Positives = 251/321 (78%), Gaps = 9/321 (2%)
Query: 7 VANDINEAQTDQKEDQLLEASDVFTRAKHPVTLK-FEDIVYKIKMK--KGFYGSNKKIEE 63
V+ D+ EA ++ D +F +A PVTLK FE++VY +K+K +G++ N K EE
Sbjct: 6 VSMDV-EAPIEKTNDDRSLPFSIFKKANTPVTLKQFENLVYTVKLKEPQGWFRKNDKTEE 64
Query: 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG----RINGRITYNGKPFSNQM 119
+ ILKG+TG+VKPGE+LAMLGPSG GKT+LLTALGGR+G ++ G I+YN KP S +
Sbjct: 65 RTILKGLTGIVKPGEILAMLGPSGSGKTSLLTALGGRVGEGKGKLTGNISYNNKPLSKAV 124
Query: 120 TRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSL 179
R TGFVTQ+D L P LTVTET+VFTALL+LPNSF ++EKIK A+ VMTELGL CK+++
Sbjct: 125 KRRTGFVTQDDALYPNLTVTETLVFTALLRLPNSFKQQEKIKQAKVVMTELGLDRCKDTI 184
Query: 180 IGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRT 239
IGGP RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDST AQ+I+SIL +LA GGRT
Sbjct: 185 IGGPFLRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTTAQRIVSILWELARGGRT 244
Query: 240 IVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNYFASIGYCPSVPT-NPSDFLLD 298
+V TIHQPS+ L+YMF K+LLLSEG P+Y G S AM+YFAS+G PSV NPSDFLLD
Sbjct: 245 VVTTIHQPSSRLFYMFDKLLLLSEGNPIYFGLGSSAMDYFASVGCSPSVERINPSDFLLD 304
Query: 299 LASGMPSNGSWKEQALEQKML 319
+A+G+ S+ S + +A++ ++
Sbjct: 305 IANGVGSDESQRPEAMKAALV 325
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255586556|ref|XP_002533914.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223526124|gb|EEF28469.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 203/323 (62%), Positives = 247/323 (76%), Gaps = 15/323 (4%)
Query: 10 DINEAQTDQKEDQLLEASDVFTRAKHPVTLKFEDIVYKIKMKKGFYGSNKKI-------- 61
DI ++KE + E +F +A PVTLKF+++VYK+ ++K S +K
Sbjct: 2 DIESQNFNKKEPE--EVVSIFKKANRPVTLKFDEVVYKVGLQKPSGWSCQKGMKVVSCQN 59
Query: 62 ----EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGR-ITYNGKPFS 116
+EK ILKGITGMV PGEMLAMLGPSG GKTTLLTALGG+LG G ITYNGKPFS
Sbjct: 60 GIKGDEKVILKGITGMVFPGEMLAMLGPSGSGKTTLLTALGGKLGGKLGGKITYNGKPFS 119
Query: 117 NQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK 176
N M RNTGFVTQ+DVL P+LTVTET+VFTALL+LP T++EKI EAV+T+LGL+ CK
Sbjct: 120 NAMKRNTGFVTQDDVLYPHLTVTETLVFTALLRLPKELTKQEKIMHGEAVLTQLGLTRCK 179
Query: 177 NSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG 236
NS+IGGP RG+SGGERKRVSIGQE+LINPSLLFLDEPTSGLDST AQ+I+S + + A G
Sbjct: 180 NSIIGGPFLRGISGGERKRVSIGQELLINPSLLFLDEPTSGLDSTTAQRIVSTVWEQAKG 239
Query: 237 GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNYFASIGYCPSVPTNPSDFL 296
GRTIVMTIHQPS+ L+YMF KVLLLSEG PLY G+ S MNYF+SIG+ PSV NP+D+L
Sbjct: 240 GRTIVMTIHQPSSRLFYMFDKVLLLSEGNPLYFGKGSEVMNYFSSIGFEPSVAMNPADYL 299
Query: 297 LDLASGMPSNGSWKEQALEQKML 319
LDL++G+ S ++QA ++ L
Sbjct: 300 LDLSNGISSYTDSRDQATVKQTL 322
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143054|emb|CBI20349.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 198/286 (69%), Positives = 239/286 (83%), Gaps = 4/286 (1%)
Query: 25 EASDVFTRAKHP--VTLKFEDIVYKIKMKKG-FYGSNKKIEEKAILKGITGMVKPGEMLA 81
E +FT+AK+ V LKFE++ YK K KG + K EEK ILKGITG+V PGEMLA
Sbjct: 16 EPPPIFTKAKNSGHVILKFEEVDYKAKTHKGGLLRKDSKPEEKHILKGITGIVLPGEMLA 75
Query: 82 MLGPSGCGKTTLLTALGGRLGRING-RITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTE 140
MLGPSG GKTTLLTALGGRLG ITYNGKPFSN+M R+TGFVTQ+DVL P+LTVTE
Sbjct: 76 MLGPSGSGKTTLLTALGGRLGGRLNGSITYNGKPFSNRMKRSTGFVTQDDVLYPHLTVTE 135
Query: 141 TMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQ 200
T+VFTALL+LPN+ ++++K++ AEAV+T+LGL++CK+S+IG P RGVSGGERKRVSIGQ
Sbjct: 136 TLVFTALLRLPNTISKEDKVRHAEAVITQLGLTKCKDSIIGNPFLRGVSGGERKRVSIGQ 195
Query: 201 EILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLL 260
E+LINPSLLFLDEPTSGLDST AQ+I+S L +LA GGRT+VMTIHQPS+ L+YMFHKVLL
Sbjct: 196 EMLINPSLLFLDEPTSGLDSTTAQRIVSTLWELAKGGRTVVMTIHQPSSRLFYMFHKVLL 255
Query: 261 LSEGYPLYSGEASGAMNYFASIGYCPSVPTNPSDFLLDLASGMPSN 306
LSEG PLY G+ + AM+YF+SIG+ PSV NPSDFLLDLA+G+ S+
Sbjct: 256 LSEGNPLYFGKGAEAMDYFSSIGFAPSVAMNPSDFLLDLANGVLSD 301
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225461363|ref|XP_002281949.1| PREDICTED: ABC transporter G family member 9-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 198/286 (69%), Positives = 239/286 (83%), Gaps = 4/286 (1%)
Query: 25 EASDVFTRAKHP--VTLKFEDIVYKIKMKKG-FYGSNKKIEEKAILKGITGMVKPGEMLA 81
E +FT+AK+ V LKFE++ YK K KG + K EEK ILKGITG+V PGEMLA
Sbjct: 16 EPPPIFTKAKNSGHVILKFEEVDYKAKTHKGGLLRKDSKPEEKHILKGITGIVLPGEMLA 75
Query: 82 MLGPSGCGKTTLLTALGGRLGRING-RITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTE 140
MLGPSG GKTTLLTALGGRLG ITYNGKPFSN+M R+TGFVTQ+DVL P+LTVTE
Sbjct: 76 MLGPSGSGKTTLLTALGGRLGGRLNGSITYNGKPFSNRMKRSTGFVTQDDVLYPHLTVTE 135
Query: 141 TMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQ 200
T+VFTALL+LPN+ ++++K++ AEAV+T+LGL++CK+S+IG P RGVSGGERKRVSIGQ
Sbjct: 136 TLVFTALLRLPNTISKEDKVRHAEAVITQLGLTKCKDSIIGNPFLRGVSGGERKRVSIGQ 195
Query: 201 EILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLL 260
E+LINPSLLFLDEPTSGLDST AQ+I+S L +LA GGRT+VMTIHQPS+ L+YMFHKVLL
Sbjct: 196 EMLINPSLLFLDEPTSGLDSTTAQRIVSTLWELAKGGRTVVMTIHQPSSRLFYMFHKVLL 255
Query: 261 LSEGYPLYSGEASGAMNYFASIGYCPSVPTNPSDFLLDLASGMPSN 306
LSEG PLY G+ + AM+YF+SIG+ PSV NPSDFLLDLA+G+ S+
Sbjct: 256 LSEGNPLYFGKGAEAMDYFSSIGFAPSVAMNPSDFLLDLANGVLSD 301
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224115010|ref|XP_002316916.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222859981|gb|EEE97528.1| white-brown-complex ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 198/282 (70%), Positives = 235/282 (83%), Gaps = 2/282 (0%)
Query: 27 SDVFTRAKHPVTLKFEDIVYKIKM-KKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGP 85
S +F +A V+L+FED+VYK+++ K GF G K EEK ILKGITG V PGEMLAM GP
Sbjct: 19 STIFKKATRAVSLRFEDVVYKVRLTKAGFCGKIVKAEEKVILKGITGKVLPGEMLAMFGP 78
Query: 86 SGCGKTTLLTALGGRLGRING-RITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVF 144
SG GKTTLLTALGG+LG + I+YNGK FSN M RN GFVTQ+DVL P+LTVTET+VF
Sbjct: 79 SGSGKTTLLTALGGKLGGLLDGNISYNGKNFSNSMKRNMGFVTQDDVLYPHLTVTETLVF 138
Query: 145 TALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILI 204
TALL+L N+F+++EKI AE+V+T+LGL++CKNS+IGGP RGVSGGERKRVSIGQE+LI
Sbjct: 139 TALLRLENTFSKEEKIMHAESVITQLGLTKCKNSIIGGPFMRGVSGGERKRVSIGQEMLI 198
Query: 205 NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
NPSLLFLDEPTSGLDST AQ+I+S L +LA GGRTIVMTIHQPS+ L+YMF KVLLLSEG
Sbjct: 199 NPSLLFLDEPTSGLDSTTAQRIVSNLWELAKGGRTIVMTIHQPSSRLFYMFDKVLLLSEG 258
Query: 265 YPLYSGEASGAMNYFASIGYCPSVPTNPSDFLLDLASGMPSN 306
PLY GE S M+YF+S GY P+VP NP+DFLLDLA+G+ SN
Sbjct: 259 SPLYFGEGSQVMDYFSSNGYAPAVPMNPADFLLDLANGVSSN 300
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147802534|emb|CAN62144.1| hypothetical protein VITISV_007841 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 196/282 (69%), Positives = 237/282 (84%), Gaps = 4/282 (1%)
Query: 29 VFTRAKHP--VTLKFEDIVYKIKMKKG-FYGSNKKIEEKAILKGITGMVKPGEMLAMLGP 85
+FT+A + V LKFE++ YK K KG + K EEK ILKGITG+V PGEMLAMLGP
Sbjct: 23 IFTKAXNSGHVILKFEEVDYKAKTHKGGLLRKDSKPEEKHILKGITGIVLPGEMLAMLGP 82
Query: 86 SGCGKTTLLTALGGRLGRING-RITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVF 144
SG GKTTLLTALGGRLG ITYNGKPFSN+M R+TGFVTQ+DVL P+LTVTET+VF
Sbjct: 83 SGSGKTTLLTALGGRLGGRLNGSITYNGKPFSNRMKRSTGFVTQDDVLYPHLTVTETLVF 142
Query: 145 TALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILI 204
TALL+LPN+ ++++K++ AEAV+T+LGL++CK+S+IG P RGVSGGERKRVSIGQE+LI
Sbjct: 143 TALLRLPNTISKEDKVRHAEAVITQLGLTKCKDSIIGNPFLRGVSGGERKRVSIGQEMLI 202
Query: 205 NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
NPSLLFLDEPTSGLDST AQ+I+S L +LA GGRT+VMTIHQPS+ L+YMFHKVLLLSEG
Sbjct: 203 NPSLLFLDEPTSGLDSTTAQRIVSTLWELAKGGRTVVMTIHQPSSRLFYMFHKVLLLSEG 262
Query: 265 YPLYSGEASGAMNYFASIGYCPSVPTNPSDFLLDLASGMPSN 306
PLY G+ + AM+YF+SIG+ PSV NPSDFLLDLA+G+ S+
Sbjct: 263 NPLYFGKGAEAMDYFSSIGFAPSVAMNPSDFLLDLANGVLSD 304
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128209|ref|XP_002329108.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222869777|gb|EEF06908.1| white-brown-complex ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 200/296 (67%), Positives = 238/296 (80%), Gaps = 6/296 (2%)
Query: 13 EAQTDQKEDQLLEASDVFTRAKHPVTLKFEDIVYKIKM-KKGFYGSNKKIEEKAILKGIT 71
EAQ +++ E + +F +A + LKFED+VYKIK K GF G K EEK ILKG+T
Sbjct: 9 EAQNEKQP----EVAAIFKKANSAIALKFEDVVYKIKFTKSGFCGKITKTEEKIILKGVT 64
Query: 72 GMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRING-RITYNGKPFSNQMTRNTGFVTQED 130
G V PGEMLAMLGPSG KTTLLTALGG+LG + ITYNGK FSN M RN GFVTQ+D
Sbjct: 65 GKVLPGEMLAMLGPSGSSKTTLLTALGGKLGGLLDGNITYNGKSFSNSMKRNMGFVTQDD 124
Query: 131 VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190
VL P+LTV ET+VFTALL+L N+FT++EKI AE+V+T+LGL++CKNS+IGG RG+SG
Sbjct: 125 VLYPHLTVAETLVFTALLRLENTFTKEEKIMHAESVITQLGLTKCKNSIIGGQFLRGLSG 184
Query: 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNM 250
GERKRVSIGQE+LINPSLL LDEPTSGLDST AQ+I+S L +LA GGRTIVMTIHQPS+
Sbjct: 185 GERKRVSIGQEMLINPSLLLLDEPTSGLDSTTAQRIVSTLRELAKGGRTIVMTIHQPSSR 244
Query: 251 LYYMFHKVLLLSEGYPLYSGEASGAMNYFASIGYCPSVPTNPSDFLLDLASGMPSN 306
L+Y+F KVLLLSEG PLY GE S M+YF+SIGY P+VP NP+DFLLDLA+G+ SN
Sbjct: 245 LFYLFDKVLLLSEGNPLYFGERSQVMDYFSSIGYAPAVPMNPADFLLDLANGVSSN 300
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 508 | ||||||
| TAIR|locus:2028656 | 648 | ABCG14 "ATP-binding cassette G | 0.570 | 0.447 | 0.544 | 1.5e-125 | |
| TAIR|locus:2144133 | 751 | ABCG22 "ATP-binding cassette G | 0.515 | 0.348 | 0.486 | 8.8e-96 | |
| TAIR|locus:2016089 | 662 | ABCG25 "ATP-binding casette G2 | 0.551 | 0.422 | 0.461 | 3.8e-91 | |
| TAIR|locus:2090009 | 685 | ABCG26 "ATP-binding cassette G | 0.604 | 0.448 | 0.424 | 1.3e-90 | |
| UNIPROTKB|F1RW52 | 656 | ABCG2 "ATP-binding cassette su | 0.600 | 0.464 | 0.381 | 2e-67 | |
| UNIPROTKB|Q8MIB3 | 656 | ABCG2 "ATP-binding cassette su | 0.600 | 0.464 | 0.381 | 4.2e-67 | |
| UNIPROTKB|Q9UNQ0 | 655 | ABCG2 "ATP-binding cassette su | 0.515 | 0.4 | 0.398 | 4.8e-66 | |
| UNIPROTKB|B2D1N9 | 658 | ABCG2 "ATP-binding cassette su | 0.584 | 0.451 | 0.377 | 3.3e-65 | |
| UNIPROTKB|Q4GZT4 | 655 | ABCG2 "ATP-binding cassette su | 0.584 | 0.453 | 0.377 | 3.3e-65 | |
| UNIPROTKB|F1PG82 | 658 | ABCG2 "Uncharacterized protein | 0.588 | 0.454 | 0.368 | 1.4e-64 |
| TAIR|locus:2028656 ABCG14 "ATP-binding cassette G14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 792 (283.9 bits), Expect = 1.5e-125, Sum P(2) = 1.5e-125
Identities = 160/294 (54%), Positives = 210/294 (71%)
Query: 35 HPVTLKFEDIVYKIKMKKGFY--GSNKKIEEKAILKGITGMVKPGEMLAMLGPSXXXXXX 92
+P+TLKFE++VYK+K+++ GS K +EK IL GITGMV PGE LAMLGPS
Sbjct: 49 YPITLKFEEVVYKVKIEQTSQCMGSWKS-KEKTILNGITGMVCPGEFLAMLGPSGSGKTT 107
Query: 93 XXXXXXXXXXXXXXXXT-YNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP 151
YNG+PFS + R TGFV Q+DVL P+LTV ET+ FTALL+LP
Sbjct: 108 LLSALGGRLSKTFSGKVMYNGQPFSGCIKRRTGFVAQDDVLYPHLTVWETLFFTALLRLP 167
Query: 152 NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFL 211
+S T EK + + V+ ELGL+ C NS+IGGPL RG+SGGE+KRVSIGQE+LINPSLL L
Sbjct: 168 SSLTRDEKAEHVDRVIAELGLNRCTNSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLL 227
Query: 212 DEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271
DEPTSGLDST A +I++ + +LA+GGRT+V TIHQPS+ +Y+MF KV+LLSEG P+Y G
Sbjct: 228 DEPTSGLDSTTAHRIVTTIKRLASGGRTVVTTIHQPSSRIYHMFDKVVLLSEGSPIYYGA 287
Query: 272 ASGAMNYFASIGYCPSVPTNPSDFLLDLASGMPSNGSWKEQALEQKMLEKEIPS 325
AS A+ YF+S+G+ S+ NP+D LLDLA+G+P + + EQK +++ + S
Sbjct: 288 ASSAVEYFSSLGFSTSLTVNPADLLLDLANGIPPDTQKETSEQEQKTVKETLVS 341
|
|
| TAIR|locus:2144133 ABCG22 "ATP-binding cassette G22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 644 (231.8 bits), Expect = 8.8e-96, Sum P(2) = 8.8e-96
Identities = 131/269 (48%), Positives = 178/269 (66%)
Query: 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSXXXXXXXXX 95
P+ LKF D+ YK+ +KK +E K IL GI+G V PGE+LA++GPS
Sbjct: 154 PIFLKFRDVTYKVVIKK----LTSSVE-KEILTGISGSVNPGEVLALMGPSGSGKTTLLS 208
Query: 96 XXXXXXXXXXX--XXTYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNS 153
TYN KP+S + GFVTQ+DVL P+LTV ET+ + A L+LP +
Sbjct: 209 LLAGRISQSSTGGSVTYNDKPYSKYLKSKIGFVTQDDVLFPHLTVKETLTYAARLRLPKT 268
Query: 154 FTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDE 213
T ++K + A V+ ELGL C++++IGG RGVSGGERKRVSIG EI+INPSLL LDE
Sbjct: 269 LTREQKKQRALDVIQELGLERCQDTMIGGAFVRGVSGGERKRVSIGNEIIINPSLLLLDE 328
Query: 214 PTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273
PTSGLDST A + + +L +A G+T++ TIHQPS+ L++ F K++LL G LY G++S
Sbjct: 329 PTSGLDSTTALRTILMLHDIAEAGKTVITTIHQPSSRLFHRFDKLILLGRGSLLYFGKSS 388
Query: 274 GAMNYFASIGYCPSVPTNPSDFLLDLASG 302
A++YF+SIG P + NP++FLLDLA+G
Sbjct: 389 EALDYFSSIGCSPLIAMNPAEFLLDLANG 417
|
|
| TAIR|locus:2016089 ABCG25 "ATP-binding casette G25" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 624 (224.7 bits), Expect = 3.8e-91, Sum P(2) = 3.8e-91
Identities = 131/284 (46%), Positives = 183/284 (64%)
Query: 24 LEASDVFTRAK-HPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAM 82
L+ DV R K H ++ +I + +K+ + EE+ IL G+TGM+ PGE +A+
Sbjct: 40 LKFVDVCYRVKIHGMSNDSCNIKKLLGLKQKPSDETRSTEERTILSGVTGMISPGEFMAV 99
Query: 83 LGPSXXXXXXXXXXXXXXXXXXXXXXTY--NGKPFSNQMTRNTGFVTQEDVLSPYLTVTE 140
LGPS N + Q + TGFV Q+D+L P+LTV E
Sbjct: 100 LGPSGSGKSTLLNAVAGRLHGSNLTGKILINDGKITKQTLKRTGFVAQDDLLYPHLTVRE 159
Query: 141 TMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQ 200
T+VF ALL+LP S T K++ AE+V++ELGL++C+N+++G RG+SGGERKRVSI
Sbjct: 160 TLVFVALLRLPRSLTRDVKLRAAESVISELGLTKCENTVVGNTFIRGISGGERKRVSIAH 219
Query: 201 EILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVL 259
E+LINPSLL LDEPTSGLD+T A +++ L LA+G G+T+V +IHQPS+ ++ MF VL
Sbjct: 220 ELLINPSLLVLDEPTSGLDATAALRLVQTLAGLAHGKGKTVVTSIHQPSSRVFQMFDTVL 279
Query: 260 LLSEGYPLYSGEASGAMNYFASIGYCPSVPTNPSDFLLDLASGM 303
LLSEG L+ G+ AM YF S+G+ P+ P NP+DFLLDLA+G+
Sbjct: 280 LLSEGKCLFVGKGRDAMAYFESVGFSPAFPMNPADFLLDLANGV 323
|
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| TAIR|locus:2090009 ABCG26 "ATP-binding cassette G26" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 628 (226.1 bits), Expect = 1.3e-90, Sum P(2) = 1.3e-90
Identities = 138/325 (42%), Positives = 193/325 (59%)
Query: 36 PVTLKFEDIVYKIKMKKGFYGS------NKKIEE--------KAILKGITGMVKPGEMLA 81
P+ LKFED+ YK++ + +K + K ILKGITG PGE+LA
Sbjct: 62 PIFLKFEDVEYKVRNSHASSANLVKTMVSKVVTHTNPDPDGYKHILKGITGSTGPGEILA 121
Query: 82 MLGPSXXXXXXXXXXXXXXXXXXXXXX-TYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTE 140
++GPS TYN P+S + R GFVTQ+DVL P LTV E
Sbjct: 122 LMGPSGSGKTTLLKIMGGRLTDNVKGKLTYNDIPYSPSVKRRIGFVTQDDVLLPQLTVEE 181
Query: 141 TMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQ 200
T+ F A L+LP+S ++++K E ++ ELGL C+ + +GG +G+SGGERKR SI
Sbjct: 182 TLAFAAFLRLPSSMSKEQKYAKIEMIIKELGLERCRRTRVGGGFVKGISGGERKRASIAY 241
Query: 201 EILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLL 260
EIL++PSLL LDEPTSGLDST A ++L IL +A GRT++ TIHQPS+ +++MF K+LL
Sbjct: 242 EILVDPSLLLLDEPTSGLDSTSATKLLHILQGVAKAGRTVITTIHQPSSRMFHMFDKLLL 301
Query: 261 LSEGYPLYSGEASGAMNYFASIGYCPSVPTNPSDFLLDLASGMPSNGSWKEQALEQKMLE 320
+SEG+P + G+A +M YF+S+ P + NP++FLLDLA+G S+ S ++ L K +
Sbjct: 302 ISEGHPAFYGKARESMEYFSSLRILPEIAMNPAEFLLDLATGQVSDISLPDELLAAKTAQ 361
Query: 321 KEIPSGMYRLSAYFMSRIISDLPIK 345
P L Y R +DL K
Sbjct: 362 ---PDSEEVLLKYLKQRYKTDLEPK 383
|
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| UNIPROTKB|F1RW52 ABCG2 "ATP-binding cassette sub-family G member 2" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 509 (184.2 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
Identities = 121/317 (38%), Positives = 178/317 (56%)
Query: 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSXXXXXXXXXXXX 98
L F DI Y++K+K GF K +E K IL I G++KPG + A+LGP+
Sbjct: 37 LSFHDICYRVKVKSGFLFCRKTVE-KEILTNINGIMKPG-LNAILGPTGGGKSSLLDVLA 94
Query: 99 XXXX--XXXXXXTYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTE 156
NG P N+G+V Q+DV+ LTV E + F+A L+LP + T
Sbjct: 95 ARKDPHGLSGDVLINGAPRPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTN 154
Query: 157 KEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTS 216
EK + V+ ELGL + +S +G RGVSGGERKR SI E++ +PS+LFLDEPT+
Sbjct: 155 HEKNERINMVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIAMELITDPSILFLDEPTT 214
Query: 217 GLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAM 276
GLDS+ A +L +L +++ GRTI+ +IHQP ++ +F + LL+ G ++ G A A+
Sbjct: 215 GLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAREAL 274
Query: 277 NYFASIGYCPSVPTNPSDFLLDLASG-----MPSNGSWKEQALE-QKMLEKEIPSGMYRL 330
YFASIGY NP+DF LD+ +G + S E A E ++ EK+ P + +L
Sbjct: 275 GYFASIGYNCEPYNNPADFFLDVINGDSSAVVLSRADRDEGAQEPEEPPEKDTPL-IDKL 333
Query: 331 SAYFM-SRIISDLPIKL 346
+A++ S D ++L
Sbjct: 334 AAFYTNSSFFKDTKVEL 350
|
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| UNIPROTKB|Q8MIB3 ABCG2 "ATP-binding cassette sub-family G member 2" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 509 (184.2 bits), Expect = 4.2e-67, Sum P(2) = 4.2e-67
Identities = 121/317 (38%), Positives = 178/317 (56%)
Query: 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSXXXXXXXXXXXX 98
L F DI Y++K+K GF K +E K IL I G++KPG + A+LGP+
Sbjct: 37 LSFHDICYRVKVKSGFLFCRKTVE-KEILTNINGIMKPG-LNAILGPTGGGKSSLLDVLA 94
Query: 99 XXXX--XXXXXXTYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTE 156
NG P N+G+V Q+DV+ LTV E + F+A L+LP + T
Sbjct: 95 ARKDPHGLSGDVLINGAPRPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTN 154
Query: 157 KEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTS 216
EK + V+ ELGL + +S +G RGVSGGERKR SI E++ +PS+LFLDEPT+
Sbjct: 155 HEKNERINMVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIAMELITDPSILFLDEPTT 214
Query: 217 GLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAM 276
GLDS+ A +L +L +++ GRTI+ +IHQP ++ +F + LL+ G ++ G A A+
Sbjct: 215 GLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAREAL 274
Query: 277 NYFASIGYCPSVPTNPSDFLLDLASG-----MPSNGSWKEQALE-QKMLEKEIPSGMYRL 330
YFASIGY NP+DF LD+ +G + S E A E ++ EK+ P + +L
Sbjct: 275 GYFASIGYNCEPYNNPADFFLDVINGDSSAVVLSRADRDEGAQEPEEPPEKDTPL-IDKL 333
Query: 331 SAYFM-SRIISDLPIKL 346
+A++ S D ++L
Sbjct: 334 AAFYTNSSFFKDTKVEL 350
|
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| UNIPROTKB|Q9UNQ0 ABCG2 "ATP-binding cassette sub-family G member 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 493 (178.6 bits), Expect = 4.8e-66, Sum P(2) = 4.8e-66
Identities = 106/266 (39%), Positives = 153/266 (57%)
Query: 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSXXXXXXXXXXXX 98
L F +I Y++K+K GF K +E K IL I G++KPG + A+LGP+
Sbjct: 37 LSFHNICYRVKLKSGFLPCRKPVE-KEILSNINGIMKPG-LNAILGPTGGGKSSLLDVLA 94
Query: 99 XXX--XXXXXXXTYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTE 156
NG P N+G+V Q+DV+ LTV E + F+A L+L + T
Sbjct: 95 ARKDPSGLSGDVLINGAPRPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLATTMTN 154
Query: 157 KEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTS 216
EK + V+ ELGL + +S +G RGVSGGERKR SIG E++ +PS+LFLDEPT+
Sbjct: 155 HEKNERINRVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIGMELITDPSILFLDEPTT 214
Query: 217 GLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAM 276
GLDS+ A +L +L +++ GRTI+ +IHQP ++ +F + LL+ G ++ G A A+
Sbjct: 215 GLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEAL 274
Query: 277 NYFASIGYCPSVPTNPSDFLLDLASG 302
YF S GY NP+DF LD+ +G
Sbjct: 275 GYFESAGYHCEAYNNPADFFLDIING 300
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| UNIPROTKB|B2D1N9 ABCG2 "ATP-binding cassette sub-family G member 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 492 (178.3 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
Identities = 114/302 (37%), Positives = 168/302 (55%)
Query: 26 ASDVFTRAKHPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGP 85
+ D+ T + V L F +I Y++K+K GF K IE K IL I G++KPG + A+LGP
Sbjct: 27 SKDLQTLTEGAV-LSFHNICYRVKVKTGFLLCRKTIE-KEILANINGVMKPG-LNAILGP 83
Query: 86 SXXXXXXXXXXXXXXXX--XXXXXXTYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMV 143
+ NG P N+G+V Q+DV+ LTV E +
Sbjct: 84 TGGGKSSLLDILAARKDPHGLSGDVLINGAPRPANFKCNSGYVVQDDVVMGTLTVRENLQ 143
Query: 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEIL 203
F+A L+LP + T EK + V+ ELGL + +S +G RGVSGGERKR SI E++
Sbjct: 144 FSAALRLPTTMTSYEKNERINKVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIAMELI 203
Query: 204 INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263
+PS+LFLDEPT+GLDS+ A +L +L +++ GRTI+ +IHQP ++ +F + LL+
Sbjct: 204 TDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLAS 263
Query: 264 GYPLYSGEASGAMNYFASIGYCPSVPTNPSDFLLDLASGMPSNGSWKEQALEQKMLEKEI 323
G ++ G A A+ YF +IG+ NP+DF LD+ +G S + + + E E
Sbjct: 264 GRLMFHGPAQEALGYFGAIGFRCEPYNNPADFFLDIINGDSSAVVLNREDIGDEANETEE 323
Query: 324 PS 325
PS
Sbjct: 324 PS 325
|
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| UNIPROTKB|Q4GZT4 ABCG2 "ATP-binding cassette sub-family G member 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 492 (178.3 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
Identities = 114/302 (37%), Positives = 168/302 (55%)
Query: 26 ASDVFTRAKHPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGP 85
+ D+ T + V L F +I Y++K+K GF K IE K IL I G++KPG + A+LGP
Sbjct: 24 SKDLQTLTEGAV-LSFHNICYRVKVKTGFLLCRKTIE-KEILANINGVMKPG-LNAILGP 80
Query: 86 SXXXXXXXXXXXXXXXX--XXXXXXTYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMV 143
+ NG P N+G+V Q+DV+ LTV E +
Sbjct: 81 TGGGKSSLLDILAARKDPHGLSGDVLINGAPRPANFKCNSGYVVQDDVVMGTLTVRENLQ 140
Query: 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEIL 203
F+A L+LP + T EK + V+ ELGL + +S +G RGVSGGERKR SI E++
Sbjct: 141 FSAALRLPTTMTSYEKNERINKVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIAMELI 200
Query: 204 INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263
+PS+LFLDEPT+GLDS+ A +L +L +++ GRTI+ +IHQP ++ +F + LL+
Sbjct: 201 TDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLAS 260
Query: 264 GYPLYSGEASGAMNYFASIGYCPSVPTNPSDFLLDLASGMPSNGSWKEQALEQKMLEKEI 323
G ++ G A A+ YF +IG+ NP+DF LD+ +G S + + + E E
Sbjct: 261 GRLMFHGPAQEALGYFGAIGFRCEPYNNPADFFLDIINGDSSAVVLNREDIGDEANETEE 320
Query: 324 PS 325
PS
Sbjct: 321 PS 322
|
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| UNIPROTKB|F1PG82 ABCG2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 494 (179.0 bits), Expect = 1.4e-64, Sum P(2) = 1.4e-64
Identities = 112/304 (36%), Positives = 172/304 (56%)
Query: 24 LEASDVFTRAKHPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAML 83
+ ++D+ T + V L F +I Y++K+K GF K +E K IL I G+++PG + A+L
Sbjct: 26 MTSNDLKTSTEVAV-LSFHNIYYRVKVKSGFLLGRKTVE-KEILTNINGVMRPG-LNAIL 82
Query: 84 GPSXXXXXXXXXXXXXXXX--XXXXXXTYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTET 141
GP+ NG P N+G+V Q+DV+ LTV E
Sbjct: 83 GPTGGGKSSLLDVLAARKDPHGLSGDVLINGAPRPANFKCNSGYVVQDDVVMGTLTVREN 142
Query: 142 MVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQE 201
+ F+A L+LP + T EK + V+ +LGL + +S +G RGVSGGERKR SIG E
Sbjct: 143 LQFSAALRLPTTMTSHEKNERINKVIQQLGLDKVADSKVGTQFIRGVSGGERKRTSIGME 202
Query: 202 ILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261
++ +P++LFLDEPT+GLDS+ A +L +L +++ GRTI+ +IHQP ++ +F + LL
Sbjct: 203 LITDPAILFLDEPTTGLDSSTANAVLLLLKRMSEQGRTIIFSIHQPRYSIFKLFDSLTLL 262
Query: 262 SEGYPLYSGEASGAMNYFASIGYCPSVPTNPSDFLLDLASGMPSNGSWKEQALEQKMLEK 321
+ G ++ G A A+ +FAS+GY NP+DF LD+ +G S + E ++
Sbjct: 263 AAGKLMFHGPAQEALGFFASVGYHCEPYNNPADFFLDVINGDSSAVVLNREDQEGEVKVT 322
Query: 322 EIPS 325
E PS
Sbjct: 323 EEPS 326
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | AT4G27420 | ABC transporter family protein; ABC transporter family protein; FUNCTIONS IN- ATPase activity, coupled to transmembrane movement of substances; LOCATED IN- membrane; EXPRESSED IN- leaf whorl, petal, sepal, flower; EXPRESSED DURING- 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s- ATPase, AAA+ type, core (InterPro-IPR003593), ABC transporter-like (InterPro-IPR003439), ABC-2 type transporter (InterPro-IPR013525), ABC transporter, conserved site (InterPro-IPR017871); BEST Arabidopsis thaliana protein match is- ABC transporter family protein (TAIR-AT1G3177 [...] (639 aa) | |||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | AT1G48360 | hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid bindin [...] (891 aa) | • | 0.548 | |||||||
 | AT5G45560 | pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing prot [...] (719 aa) | • | 0.548 | |||||||
 | AT5G45230 | disease resistance protein (TIR-NBS-LRR class), putative; disease resistance protein (TIR-NBS-L [...] (1231 aa) | • | 0.548 | |||||||
 | PLL2 | PLL2; catalytic/ protein serine/threonine phosphatase; Encodes a protein with similarity to the [...] (674 aa) | • | 0.548 | |||||||
 | AT4G33170 | pentatricopeptide (PPR) repeat-containing protein; pentatricopeptide (PPR) repeat-containing pr [...] (990 aa) | • | 0.548 | |||||||
 | AT4G00752 | UBX domain-containing protein; UBX domain-containing protein; FUNCTIONS IN- molecular_function [...] (469 aa) | • | 0.548 | |||||||
 | AT3G46170 | short-chain dehydrogenase/reductase (SDR) family protein; short-chain dehydrogenase/reductase ( [...] (288 aa) | • | 0.548 | |||||||
 | DAR2 | DAR2 (DA1-RELATED PROTEIN 2); zinc ion binding; DA1-RELATED PROTEIN 2 (DAR2); FUNCTIONS IN- zin [...] (528 aa) | • | 0.548 | |||||||
 | AT2G39120 | ubiquitin thiolesterase; ubiquitin thiolesterase; FUNCTIONS IN- ubiquitin thiolesterase activit [...] (387 aa) | • | 0.548 | |||||||
 | AT2G22340 | unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (358 aa) | • | 0.548 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 508 | |||
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-103 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-81 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-71 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-71 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 8e-55 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-53 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-52 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-51 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-51 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-47 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 1e-46 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-37 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 4e-36 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 5e-35 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-33 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-31 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-31 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 6e-31 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-30 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 6e-30 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 9e-30 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-29 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-28 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-28 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-28 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 4e-28 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-28 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-27 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-27 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-27 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 8e-27 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-26 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-26 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-26 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 7e-26 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 8e-26 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-25 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-25 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 3e-25 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 7e-25 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 7e-25 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 8e-25 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-24 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-24 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-24 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-24 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 4e-24 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-24 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 6e-24 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 6e-24 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 9e-24 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-23 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-23 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-23 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-23 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-23 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-23 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 7e-23 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 9e-23 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-22 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-22 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-22 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-22 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-22 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 3e-22 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 3e-22 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-22 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 4e-22 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 5e-22 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-21 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-21 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-21 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-21 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-21 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-21 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-21 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-21 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-21 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 3e-21 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 4e-21 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 5e-21 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 6e-21 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 6e-21 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 6e-21 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 9e-21 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-20 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-20 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-20 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-20 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-20 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-20 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-20 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-20 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-20 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 5e-20 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 5e-20 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 6e-20 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 9e-20 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 9e-20 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 9e-20 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-19 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-19 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-19 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-19 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-19 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-19 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 3e-19 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 3e-19 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-19 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 4e-19 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 4e-19 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 8e-19 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 9e-19 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-18 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-18 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-18 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-18 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-18 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-18 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 3e-18 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 4e-18 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-18 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 6e-18 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 6e-18 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 7e-18 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 9e-18 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-17 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-17 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-17 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 3e-17 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 4e-17 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 4e-17 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-17 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 5e-17 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 7e-17 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 7e-17 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 7e-17 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 7e-17 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-16 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-16 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-16 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-16 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-16 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 4e-16 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 4e-16 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 5e-16 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 5e-16 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 5e-16 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 5e-16 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 6e-16 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 8e-16 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 9e-16 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 9e-16 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-15 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-15 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-15 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 2e-15 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-15 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-15 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-15 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 2e-15 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-15 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 4e-15 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-15 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-15 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 8e-15 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 8e-15 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 9e-15 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-14 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-14 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-14 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-14 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-14 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-14 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-14 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-14 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-14 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-14 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-14 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 3e-14 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 3e-14 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 3e-14 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 6e-14 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 6e-14 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 7e-14 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 8e-14 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 9e-14 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-13 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 1e-13 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-13 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-13 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-13 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-13 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 2e-13 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 2e-13 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-13 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-13 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-13 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 3e-13 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-13 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 3e-13 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 5e-13 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 5e-13 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 6e-13 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 6e-13 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 6e-13 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 9e-13 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 9e-13 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-12 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 1e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-12 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-12 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-12 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-12 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-12 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 2e-12 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-12 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 2e-12 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 2e-12 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-12 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-12 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 3e-12 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 3e-12 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-12 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 3e-12 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 6e-12 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-11 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-11 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-11 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-11 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 2e-11 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 2e-11 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 3e-11 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 3e-11 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 4e-11 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 4e-11 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 4e-11 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 4e-11 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 4e-11 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 5e-11 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 6e-11 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 8e-11 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 9e-11 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 1e-10 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-10 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-10 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-10 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-10 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-10 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-10 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-10 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-10 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 3e-10 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 3e-10 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-10 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 4e-10 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 4e-10 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 4e-10 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 4e-10 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 4e-10 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 5e-10 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 6e-10 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 7e-10 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 8e-10 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 9e-10 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-09 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-09 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-09 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 1e-09 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-09 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 1e-09 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-09 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 1e-09 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-09 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 2e-09 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-09 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-09 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-09 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-09 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 3e-09 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 3e-09 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 5e-09 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 6e-09 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 8e-09 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 8e-09 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 8e-09 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-08 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-08 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-08 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-08 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 2e-08 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-08 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 2e-08 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-08 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 3e-08 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 4e-08 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 4e-08 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 4e-08 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 7e-08 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 7e-08 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 8e-08 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-07 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 1e-07 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 1e-07 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-07 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 2e-07 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 2e-07 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-07 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 4e-07 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 4e-07 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 5e-07 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 9e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-06 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 1e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-06 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-06 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 2e-06 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-06 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-06 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-06 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 4e-06 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 4e-06 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 5e-06 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 6e-06 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 6e-06 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 6e-06 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 6e-06 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 8e-06 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-05 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 1e-05 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-05 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-05 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 2e-05 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 3e-05 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 3e-05 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 3e-05 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 3e-05 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 4e-05 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 5e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 5e-05 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 6e-05 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 9e-05 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 9e-05 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-04 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 2e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 2e-04 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 2e-04 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 4e-04 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 4e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 5e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 5e-04 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 5e-04 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 0.001 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 0.002 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.002 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 0.003 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 323 bits (829), Expect = e-103
Identities = 152/287 (52%), Positives = 203/287 (70%), Gaps = 18/287 (6%)
Query: 35 HPVTLKFEDIVYKIKM-KKGFYGSNKK---------------IEEKAILKGITGMVKPGE 78
+P+TLKF D+ Y++K GSN K I+E+ IL G+TGM PGE
Sbjct: 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGE 95
Query: 79 MLAMLGPSGCGKTTLLTALGGRL--GRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYL 136
+LA+LGPSG GK+TLL AL GR+ G I N + + Q+ + TGFVTQ+D+L P+L
Sbjct: 96 ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHL 155
Query: 137 TVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196
TV ET+VF +LL+LP S T++EKI AE+V++ELGL++C+N++IG RG+SGGERKRV
Sbjct: 156 TVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRV 215
Query: 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFH 256
SI E+LINPSLL LDEPTSGLD+T A +++ L LA G+TIV ++HQPS+ +Y MF
Sbjct: 216 SIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFD 275
Query: 257 KVLLLSEGYPLYSGEASGAMNYFASIGYCPSVPTNPSDFLLDLASGM 303
VL+LSEG L+ G+ S AM YF S+G+ PS P NP+DFLLDLA+G+
Sbjct: 276 SVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGV 322
|
Length = 659 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 264 bits (677), Expect = 2e-81
Identities = 112/286 (39%), Positives = 175/286 (61%), Gaps = 14/286 (4%)
Query: 27 SDVFTRAKHPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPS 86
SDVF R +D +K + + ++ K +LK ++G+ KPGE+LA++G S
Sbjct: 8 SDVFGRVA-------QDGSWKQLVSRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSS 60
Query: 87 GCGKTTLLTALGGRLGR---INGRITYNGKPF-SNQMTRNTGFVTQEDVLSPYLTVTETM 142
G GKTTL+ AL R + +G + NG P + +M + +V Q+D+ P LTV E +
Sbjct: 61 GAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHL 120
Query: 143 VFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGP-LTRGVSGGERKRVSIGQE 201
+F A L++P T+KEK + + V+ LGL +C N+ IG P +G+SGGERKR++ E
Sbjct: 121 MFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASE 180
Query: 202 ILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261
+L +P LLF DEPTSGLDS +A ++ +L LA G+TI+ TIHQPS+ L+ +F K++L+
Sbjct: 181 LLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILM 240
Query: 262 SEGYPLYSGEASGAMNYFASIGY-CPSVPTNPSDFLLDLASGMPSN 306
+EG Y G A+ +F+ +G+ CP NP+DF + + + +P +
Sbjct: 241 AEGRVAYLGSPDQAVPFFSDLGHPCPEN-YNPADFYVQVLAVIPGS 285
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 226 bits (579), Expect = 2e-71
Identities = 92/217 (42%), Positives = 139/217 (64%), Gaps = 8/217 (3%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL---GRINGRITYNGKP 114
+ IL ++ V+ G+++A+LG SG GKTTLL A+ GR+ G +G+I +NG+P
Sbjct: 14 KNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQP 73
Query: 115 FS-NQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS 173
+Q + +V Q+D+L P LTV ET+ +TA+L+LP ++ + K E V L
Sbjct: 74 RKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDV----LLR 129
Query: 174 ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL 233
+ + IGG L +G+SGGER+RVSI ++L +P +L LDEPTSGLDS A ++S L +L
Sbjct: 130 DLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQL 189
Query: 234 ANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270
A R +++TIHQP + L+ +F ++LLLS G +YSG
Sbjct: 190 ARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 225 bits (575), Expect = 2e-71
Identities = 100/238 (42%), Positives = 138/238 (57%), Gaps = 47/238 (19%)
Query: 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLT 95
VTL F ++ +K G K +LK ++G KPGE+ A++GPSG GK+TLL
Sbjct: 1 GVTLSFRNLTVTVKSSPSKSG-------KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLN 53
Query: 96 ALGGRL--GRINGRITYNGKPFSNQMTRN-TGFVTQEDVLSPYLTVTETMVFTALLQLPN 152
AL GR ++G + NG+P + R G+V Q+D+L P LTV ET++F A L
Sbjct: 54 ALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL---- 109
Query: 153 SFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLD 212
RG+SGGERKRVSI E++ NPSLLFLD
Sbjct: 110 ---------------------------------RGLSGGERKRVSIALELVSNPSLLFLD 136
Query: 213 EPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270
EPTSGLDS+ A Q++S+L +LA+ GRTI+ +IHQPS+ ++ +F K+LLLS+G +Y G
Sbjct: 137 EPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 198 bits (505), Expect = 8e-55
Identities = 150/461 (32%), Positives = 227/461 (49%), Gaps = 72/461 (15%)
Query: 8 ANDINEAQTDQKEDQLLEASDV----FTRAKHPVTLKF-EDIVYKIKMKKGFYGSNKKIE 62
NDI + D E+ DV + + ++ Y++K+KK E
Sbjct: 724 KNDIEAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKK---------E 774
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL--GRI-NGRITYNGKPFSNQM 119
++ IL + G VKPG + A++G SG GKTTLL L R+ G I G NG+P +
Sbjct: 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSF 834
Query: 120 TRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSL 179
R+ G+V Q+D+ P TV E++ F+A L+ P S ++ EK++ E V+ L + +++
Sbjct: 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAV 894
Query: 180 IGGPLTRGVSGGERKRVSIGQEILINP-SLLFLDEPTSGLDSTIAQQILSILLKLANGGR 238
+G P G++ +RKR++IG E++ P LLFLDEPTSGLDS A I ++ KLA+ G+
Sbjct: 895 VGVP-GEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQ 953
Query: 239 TIVMTIHQPSNMLYYMFHKVLLLSEG----YPLYSGEASGAM-NYFASIG--YCPSVPTN 291
I+ TIHQPS +L+ F ++LLL +G Y GE S + NYF G CP N
Sbjct: 954 AILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPE-DAN 1012
Query: 292 PSDFLLDL---ASGMPSNGSWKE--------QALEQKM--LEKEIP--SGMY---RLSAY 333
P++++L++ A G +N + E QA++ ++ LE E+ LS Y
Sbjct: 1013 PAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKY 1072
Query: 334 FMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLF-------SVLVSQGL 386
S KLV+ F YW S FF T+F LF QGL
Sbjct: 1073 AASLWYQ---FKLVLWRTF--QQYWRT-PDYLYSKFFLTIFAALFIGFTFFKVGTSLQGL 1126
Query: 387 GLAIGAMVMEQKSATILGSIIMQLFVLAGGYYVQNVPSFIA 427
+ A+ M AT+L + ++Q Q +P F+A
Sbjct: 1127 QNQMFAVFM----ATVLFNPLIQ----------QYLPPFVA 1153
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 178 bits (454), Expect = 1e-53
Identities = 90/231 (38%), Positives = 123/231 (53%), Gaps = 48/231 (20%)
Query: 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLT 95
L ++++ Y + +K G ++ +L I+G VKPG + A++G SG GKTTLL
Sbjct: 1 GSVLTWKNLNYTVPVKGG---------KRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 96 ALGGR--LGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNS 153
L GR G I G I NG+P R+TG+V Q+DV SP LTV E + F+ALL
Sbjct: 52 VLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALL----- 106
Query: 154 FTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDE 213
RG+S +RKR++IG E+ PS+LFLDE
Sbjct: 107 --------------------------------RGLSVEQRKRLTIGVELAAKPSILFLDE 134
Query: 214 PTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
PTSGLDS A I+ L KLA+ G+ I+ TIHQPS ++ F ++LLL G
Sbjct: 135 PTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRG 185
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 1e-52
Identities = 91/199 (45%), Positives = 125/199 (62%), Gaps = 11/199 (5%)
Query: 315 EQKMLEKEIPSGMYRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLF 374
E+ + KE SGMY LS+YFM+RI+ DLP++L++PT+F+T+TYWMAGLKP F TL
Sbjct: 464 ERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLL 523
Query: 375 VLLFSVLVSQGLGLAIGAMVMEQKSATILGSIIMQLFVLAGGYYVQNVPSFIAWIEYLSI 434
VLL VLVSQGLGLA+GA +M+ K A+ + ++ M FVL GG+YV +PS +AWI+Y+S
Sbjct: 524 VLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHKLPSCMAWIKYIST 583
Query: 435 GHHTYKLLLGSQYNYNE--------TYPCGDSGGLCLVGEHPTIKKVGLHRKYYSVIALA 486
++Y+LL+ QY + + P G C E ++ SV L
Sbjct: 584 TFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAGQISP---ATSVSVLI 640
Query: 487 IMLVGYRLIAYIALMRIGA 505
M VGYRL+AY+AL RI
Sbjct: 641 FMFVGYRLLAYLALRRIKH 659
|
Length = 659 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 2e-51
Identities = 98/277 (35%), Positives = 137/277 (49%), Gaps = 18/277 (6%)
Query: 41 FEDIVYKIKMKKGF--YGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG 98
F + + KI + +GF + + ILK + G++KPGE+ +LG G G +TLL +
Sbjct: 50 FPNALLKI-LTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIA 108
Query: 99 GRL----GRINGRITYNGKPFSNQMTRNTGFV---TQEDVLSPYLTVTETMVFTALLQLP 151
+ G ITY+G G V + DV P+LTV ET+ F A + P
Sbjct: 109 SNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTP 168
Query: 152 NS----FTEKEKIK-CAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINP 206
+ + +E K A+ M GLS +N+ +G RGVSGGERKRVSI + L
Sbjct: 169 QNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGA 228
Query: 207 SLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265
+ D T GLDS A + + L AN T ++ I+Q S Y +F KV++L EGY
Sbjct: 229 KIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGY 288
Query: 266 PLYSGEASGAMNYFASIGY-CPSVPTNPSDFLLDLAS 301
+Y G A A YF +G+ CP T DFL L S
Sbjct: 289 QIYFGPADKAKQYFEKMGFKCPDRQTTA-DFLTSLTS 324
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 2e-51
Identities = 81/244 (33%), Positives = 122/244 (50%), Gaps = 18/244 (7%)
Query: 45 VYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI 104
V +++ YG +K L G++ V+PGE+ +LGP+G GKTTLL L G L
Sbjct: 4 VIEVRNLTKKYGGDKTA-----LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT 58
Query: 105 NGRITYNGKPFSNQMT---RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIK 161
+G I G + R G+V QE L P LTV E + F A L + +E+I
Sbjct: 59 SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERI- 117
Query: 162 CAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDST 221
E ++ GL + N + R +SGG ++R+SI +L +P LL LDEPTSGLD
Sbjct: 118 --EELLELFGLEDKANKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPE 170
Query: 222 IAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNYFA 280
++I +L +LA GG TI+++ H + +V++L++G + G F
Sbjct: 171 SRREIWELLRELAKEGGVTILLSTHILEE-AEELCDRVIILNDGKIIAEGTPEELKEKFG 229
Query: 281 SIGY 284
G
Sbjct: 230 GKGV 233
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 1e-47
Identities = 77/219 (35%), Positives = 110/219 (50%), Gaps = 38/219 (17%)
Query: 59 KKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG---RINGRITYNG--- 112
K + ILK +G+VKPGEM+ +LG G G +TLL AL R + G I YNG
Sbjct: 15 KGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPY 74
Query: 113 KPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGL 172
K F+ + +V++EDV P LTV ET+ F +
Sbjct: 75 KEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK----------------------- 111
Query: 173 SECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLK 232
G RG+SGGERKRVSI + ++ S+L D T GLDS+ A +IL +
Sbjct: 112 --------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRT 163
Query: 233 LANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270
+A+ T ++++Q S+ +Y +F KVL+L EG +Y G
Sbjct: 164 MADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 1e-46
Identities = 109/325 (33%), Positives = 181/325 (55%), Gaps = 26/325 (8%)
Query: 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLT 95
P+ + F+D+ Y + M + +L+ +TG +PG + A++G SG GKTTL+
Sbjct: 865 PLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMD 924
Query: 96 ALGGRL--GRINGRITYNGKPFSNQMT--RNTGFVTQEDVLSPYLTVTETMVFTALLQLP 151
L GR G I G I +G P Q T R +G+ Q D+ SP +TV E+++++A L+LP
Sbjct: 925 VLAGRKTGGYIEGDIRISGFP-KKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLP 983
Query: 152 NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFL 211
+++EK+ + VM + L K++++G P G+S +RKR++I E++ NPS++F+
Sbjct: 984 KEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFM 1043
Query: 212 DEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE-GYPLYSG 270
DEPTSGLD+ A ++ + + GRT+V TIHQPS ++ F ++LL+ G +YSG
Sbjct: 1044 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSG 1103
Query: 271 ----EASGAMNYFASIGYCPSVPT--NPSDFLLDLAS-------GMPSNGSWKEQALEQ- 316
+ + YF +I P + NP+ ++L+++S G+ +K +L Q
Sbjct: 1104 PLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQR 1163
Query: 317 -KMLEKEI---PSGMYRLSAYFMSR 337
K L KE+ P G L YF ++
Sbjct: 1164 NKALVKELSTPPPGASDL--YFATQ 1186
|
Length = 1470 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 136 bits (346), Expect = 1e-37
Identities = 64/208 (30%), Positives = 110/208 (52%), Gaps = 16/208 (7%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS----NQ 118
+ L I+ +K GE + ++GP+G GK+TLL L G LG +G + +GK + +
Sbjct: 13 ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKE 72
Query: 119 MTRNTGFVTQ--EDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK 176
+ R G V Q +D TV E + F L L E+E + E + +GL +
Sbjct: 73 LRRKVGLVFQNPDDQFF-GPTVEEEVAF-GLENL--GLPEEEIEERVEEALELVGLEGLR 128
Query: 177 NSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG 236
+ +SGG+++RV+I + ++P +L LDEPT+GLD +++L +L KL
Sbjct: 129 DRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE 183
Query: 237 GRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
G+TI++ H ++L + +V++L +G
Sbjct: 184 GKTIIIVTHDL-DLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (361), Expect = 4e-36
Identities = 91/273 (33%), Positives = 145/273 (53%), Gaps = 38/273 (13%)
Query: 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG---RINGRITYNGKPFSNQMTRN 122
ILK +G++KP M +LGP GKTTLL AL G+L +++G ITYNG + + R
Sbjct: 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRK 239
Query: 123 T-GFVTQEDVLSPYLTVTETMVFTALLQ-------LPNSFTEKE---------------K 159
T +++Q DV +TV ET+ F+A Q L + +E K
Sbjct: 240 TSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMK 299
Query: 160 IKCAEAVMTE---------LGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLF 210
E V + LGL CK++++G + RG+SGG++KRV+ G+ I+ LF
Sbjct: 300 ATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLF 359
Query: 211 LDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269
+DE ++GLDS+ QI+ L ++ + T++M++ QP+ + +F ++LLSEG +Y
Sbjct: 360 MDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQ 419
Query: 270 GEASGAMNYFASIGY-CPSVPTNPSDFLLDLAS 301
G + +F S G+ CP +DFL ++ S
Sbjct: 420 GPRDHILEFFESCGFKCPE-RKGTADFLQEVTS 451
|
Length = 1470 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 5e-35
Identities = 68/219 (31%), Positives = 112/219 (51%), Gaps = 21/219 (9%)
Query: 55 YGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP 114
YG E+ LKG++ ++ GE +A++GPSG GK+TLL LGG +G + +G
Sbjct: 10 YGGGG--EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTD 67
Query: 115 FSN----QMT----RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAV 166
S ++ R+ GFV Q L P LT E + L L +KE+ + AE +
Sbjct: 68 ISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENV---ELPLLLAGVPKKERRERAEEL 124
Query: 167 MTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQI 226
+ +GL + N +SGG+++RV+I + + +P ++ DEPT LDS +++
Sbjct: 125 LERVGLGDRLNHYPS-----ELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEV 179
Query: 227 LSILLKLA-NGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
+ +L +L G TIV+ H P L +++ L +G
Sbjct: 180 MELLRELNKEAGTTIVVVTHDPE--LAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 1e-33
Identities = 59/186 (31%), Positives = 94/186 (50%), Gaps = 12/186 (6%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMT-- 120
K + ++ V GE+ +LG +G GKTT L L G L +G NG
Sbjct: 14 TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAA 73
Query: 121 -RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSL 179
++ G+ Q D L LTV E + F A L+ + E + E ++ LGL++ N
Sbjct: 74 RQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKR 130
Query: 180 IGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRT 239
R +SGG ++++S+ ++ PS+L LDEPTSGLD + I ++L++ GR+
Sbjct: 131 A-----RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR-KGRS 184
Query: 240 IVMTIH 245
I++T H
Sbjct: 185 IILTTH 190
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 1e-31
Identities = 60/209 (28%), Positives = 108/209 (51%), Gaps = 12/209 (5%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117
+ +L+ I+ V+ GE+ A++GP+G GK+TLL A+ G L +G I GKP
Sbjct: 11 TVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRK 70
Query: 118 QMTRNT-GFVTQ---EDVLSPYLTVTETMVFTALLQLPN-SFTEKEKIKCAEAVMTELGL 172
+ R G+V Q D P +TV + ++ + K+ + + + +G+
Sbjct: 71 RRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGM 129
Query: 173 SECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLK 232
+ ++ IG +SGG+++RV + + + NP LL LDEP +G+D ++I +L +
Sbjct: 130 EDLRDRQIGE-----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKE 184
Query: 233 LANGGRTIVMTIHQPSNMLYYMFHKVLLL 261
L G+T++M H ++ Y F +V+ L
Sbjct: 185 LRQEGKTVLMVTHDLGLVMAY-FDRVICL 212
|
Length = 254 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 3e-31
Identities = 66/200 (33%), Positives = 107/200 (53%), Gaps = 12/200 (6%)
Query: 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGF 125
+L+ ++ VKPGE LA++GP+G GK+TLL A+ G L +G I GKP + R G+
Sbjct: 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKR-IGY 72
Query: 126 VTQEDVLSPY--LTVTET--MVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIG 181
V Q + ++V + M L ++ +K + + +GLSE + IG
Sbjct: 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADK-AKVDEALERVGLSELADRQIG 131
Query: 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIV 241
+SGG+++RV + + ++ +P LL LDEP +G+D + I +L +L G TI+
Sbjct: 132 E-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTIL 186
Query: 242 MTIHQPSNMLYYMFHKVLLL 261
+ H +L Y F +VLLL
Sbjct: 187 VVTHDLGLVLEY-FDRVLLL 205
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 6e-31
Identities = 64/210 (30%), Positives = 99/210 (47%), Gaps = 16/210 (7%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----Q 118
K IL ++ + GE+ +LGP+G GK+TLL L G L +G + +GK ++ +
Sbjct: 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE 73
Query: 119 MTRNTGFVTQEDVLSPYLTVTETMVFTAL-LQLPNSFTEKEKIKCAEAVMTELGLSECKN 177
+ + +V Q LTV E ++ KE + E + LGL +
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLAD 133
Query: 178 SLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQ--ILSILLKLA- 234
+ +SGGER+RV I + + +L LDEPTS LD IA Q +L +L L
Sbjct: 134 RPVD-----ELSGGERQRVLIARALAQETPILLLDEPTSHLD--IAHQIEVLELLRDLNR 186
Query: 235 NGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
G T+VM +H + Y ++LL +G
Sbjct: 187 EKGLTVVMVLHDLNLAARYA-DHLILLKDG 215
|
Length = 258 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 2e-30
Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 12/209 (5%)
Query: 59 KKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ 118
K L ++ V+PGE LA+LGPSGCGKTTLL + G +G I +G+ +
Sbjct: 8 KTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGV 67
Query: 119 MT--RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK 176
RN G V Q+ L P+LTV E + F L+ + E ++ +GL
Sbjct: 68 PPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVP---KAEIRARVRELLELVGLEGLL 124
Query: 177 NSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL-AN 235
N +SGG+++RV++ + + PSLL LDEP S LD+ + +++ L +L
Sbjct: 125 NRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRE 179
Query: 236 GGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
G T + H L + ++ +++EG
Sbjct: 180 LGITTIYVTHDQEEAL-ALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 6e-30
Identities = 68/211 (32%), Positives = 109/211 (51%), Gaps = 27/211 (12%)
Query: 50 MKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI-NGRI 108
+ K + +K+E LK + ++ GE +A++GPSG GK+TLL LGG L + +G +
Sbjct: 7 VSKIYGLGGEKVE---ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG-LDKPTSGEV 62
Query: 109 TYNGKPFS----NQMT----RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFT---EK 157
NGK + ++ + GFV Q L P LTV E ++LP
Sbjct: 63 LINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLEN------VELPLLIAGKSAG 116
Query: 158 EKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSG 217
+ + AE ++ LGL + L SGG+++RV+I + ++ NP ++ DEPT
Sbjct: 117 RRKRAAEELLEVLGLEDRLLKKKPSEL----SGGQQQRVAIARALINNPKIILADEPTGN 172
Query: 218 LDSTIAQQILSILLKLA-NGGRTIVMTIHQP 247
LDS A+++L +L +L G+TI+M H P
Sbjct: 173 LDSKTAKEVLELLRELNKERGKTIIMVTHDP 203
|
Length = 226 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 9e-30
Identities = 55/201 (27%), Positives = 102/201 (50%), Gaps = 24/201 (11%)
Query: 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN------ 117
K LK ++ + PGE +A++GPSG GK+TLL L G + +G + +G +
Sbjct: 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKAL 73
Query: 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP------NSFTEKEKIKCAEAVMTEL 170
Q+ R G + Q+ L L+V E ++ L + F ++EK + A + +
Sbjct: 74 RQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAA-LERV 132
Query: 171 GLSECKNSLIGGPLTRG--VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILS 228
GL + R +SGG+++RV+I + ++ P L+ DEP + LD ++Q++
Sbjct: 133 GLLDKAY-------QRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMD 185
Query: 229 ILLKLANG-GRTIVMTIHQPS 248
+L ++ G T+++++HQ
Sbjct: 186 LLKRINREEGITVIVSLHQVD 206
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 2e-29
Identities = 54/190 (28%), Positives = 84/190 (44%), Gaps = 47/190 (24%)
Query: 59 KKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ 118
K+ +K L I+ V+ GE+ +LGP+G GKTTL+ + G L +G I GK +
Sbjct: 8 KRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKE 67
Query: 119 MT---RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC 175
R G++ +E L LTV E +
Sbjct: 68 PEEVKRRIGYLPEEPSLYENLTVRENLKL------------------------------- 96
Query: 176 KNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN 235
SGG ++R+++ Q +L +P LL LDEPTSGLD ++ +L +L
Sbjct: 97 -------------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKK 143
Query: 236 GGRTIVMTIH 245
G+TI+++ H
Sbjct: 144 EGKTILLSSH 153
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 2e-28
Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 50/214 (23%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP--- 114
+K+ +K +L ++ ++ GE++A+LGPSG GK+TLL + G +G I +G+
Sbjct: 7 SKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTD 66
Query: 115 ---FSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELG 171
+ R G V Q+ L P+LTV E +
Sbjct: 67 LEDELPPLRRRIGMVFQDFALFPHLTVLENIAL--------------------------- 99
Query: 172 LSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL 231
G+SGG+++RV++ + + ++P +L LDEPTS LD +++ ++L
Sbjct: 100 ---------------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLK 144
Query: 232 KL-ANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
L A G T+V+ H + +V++L +G
Sbjct: 145 SLQAQLGITVVLVTHDLDE-AARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 2e-28
Identities = 60/202 (29%), Positives = 102/202 (50%), Gaps = 17/202 (8%)
Query: 54 FYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGK 113
+YG K +L I + PGE++ + GPSG GKTTLLT +GG G + G+
Sbjct: 10 YYGHGSL--RKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQ 67
Query: 114 PFSN-------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAV 166
Q+ RN G++ Q L +LT + + L+L + + +E + A A+
Sbjct: 68 ELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARAM 125
Query: 167 MTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQI 226
+ +GL + + +SGG+++RV+I + ++ P L+ DEPT+ LDS + +
Sbjct: 126 LEAVGLGDHLDYY-----PHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDV 180
Query: 227 LSILLKLA-NGGRTIVMTIHQP 247
+ ++ KLA G TI++ H
Sbjct: 181 VELMQKLAREQGCTILIVTHDN 202
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 3e-28
Identities = 61/239 (25%), Positives = 104/239 (43%), Gaps = 33/239 (13%)
Query: 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTAL 97
L ++ K L ++ ++ GE L ++G SG GK+TL L
Sbjct: 3 LLSVRNLSIVYGGGKFA---------FHALNNVSLEIERGETLGIVGESGSGKSTLARLL 53
Query: 98 GGRLGRINGRITYNGKPF-----SNQMTRNTGFVTQ--EDVLSPYLTVTETMVFTALLQL 150
G +G I +GKP + R V Q L+P TV ++ L
Sbjct: 54 AGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTV-GRILSEPLRPH 112
Query: 151 PNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTR---GVSGGERKRVSIGQEILINPS 207
S +++ ++ ++GL L R +SGG+R+R++I + ++ P
Sbjct: 113 GLSKSQQR----IAELLDQVGLPP-------SFLDRRPHELSGGQRQRIAIARALIPEPK 161
Query: 208 LLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265
LL LDEPTS LD ++ QIL++LL+L G T + H ++ +M ++ ++ G
Sbjct: 162 LLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHD-LALVEHMCDRIAVMDNGQ 219
|
Length = 252 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 4e-28
Identities = 60/203 (29%), Positives = 107/203 (52%), Gaps = 17/203 (8%)
Query: 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGF 125
+L+ I V+ GE +A+LGPSGCGK+TLL + G +G + +G+P + G+
Sbjct: 18 VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRP-VTGPGPDIGY 76
Query: 126 VTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT 185
V QED L P+LTV + + L+ ++ E + A+ ++ +GL+ ++ P
Sbjct: 77 VFQEDALLPWLTVLDNVALGLELR---GKSKAEARERAKELLELVGLAGFEDKY---P-- 128
Query: 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDS----TIAQQILSILLKLANGGRTIV 241
+SGG R+RV+I + + P LL LDEP LD+ + ++L + + +T++
Sbjct: 129 HQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEET---RKTVL 185
Query: 242 MTIHQPSNMLYYMFHKVLLLSEG 264
+ H + Y+ +V++LS
Sbjct: 186 LVTHDVDEAV-YLADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 4e-28
Identities = 62/209 (29%), Positives = 97/209 (46%), Gaps = 52/209 (24%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----Q 118
+ +L ++ ++ GE++ +LGP+G GK+TLL L G L +G I +GK ++ +
Sbjct: 11 GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKE 70
Query: 119 MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNS 178
+ R +V Q + LGL+
Sbjct: 71 LARKIAYVPQ-------------------------------------ALELLGLAH---- 89
Query: 179 LIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQI--LSILLKLAN- 235
L P +SGGER+RV + + + P +L LDEPTS LD IA QI L +L +LA
Sbjct: 90 LADRPFNE-LSGGERQRVLLARALAQEPPILLLDEPTSHLD--IAHQIELLELLRRLARE 146
Query: 236 GGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
G+T+VM +H N+ +V+LL +G
Sbjct: 147 RGKTVVMVLHDL-NLAARYADRVILLKDG 174
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 1e-27
Identities = 64/198 (32%), Positives = 107/198 (54%), Gaps = 17/198 (8%)
Query: 321 KEIPSGMYRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLFSV 380
+E SG+YR+SAYF+++ I++LP+ +++P +F +ITYWM GL+ A++F LF++
Sbjct: 424 RETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVA 483
Query: 381 LVSQGLGLAIGAMVMEQKSATILGSIIMQLFVLAGGYYVQ--NVPSFIAWIEYLSIGHHT 438
V+ G I A +G + F+L GG+++ ++P + W+ YLS +
Sbjct: 484 NVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYG 543
Query: 439 YKLLLGSQY---------NYNETYPCGDSGGLCLVGEHPTIKKVGLHRKYYSVIALAIML 489
+ LL +Q+ + N T PC SG + L E + + L Y +I L I++
Sbjct: 544 NEGLLINQWSDVDNIECTSANTTGPCPSSGEVIL--ETLSFRNADL---YLDLIGLVILI 598
Query: 490 VGYRLIAYIALMRIGATR 507
+RL+AY AL RI R
Sbjct: 599 FFFRLLAYFAL-RIRIRR 615
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-27
Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 18/210 (8%)
Query: 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGK---PFSNQMTRN 122
L ++ +K GE L ++G SG GK+TL A+ G L +G I ++GK S ++ +
Sbjct: 20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKI 79
Query: 123 TG----FVTQE--DVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-C 175
V Q+ L+P +T+ E + + S E K + +GL E
Sbjct: 80 RRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLL-LVGVGLPEEV 138
Query: 176 KNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN 235
N P +SGG+R+RV+I + + +NP LL DEPTS LD ++ QIL +L KL
Sbjct: 139 LNRY---P--HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQE 193
Query: 236 G-GRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
G T++ H ++ + +V ++ G
Sbjct: 194 ELGLTLLFITHDLG-VVAKIADRVAVMYAG 222
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 4e-27
Identities = 62/192 (32%), Positives = 104/192 (54%), Gaps = 12/192 (6%)
Query: 55 YGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP 114
YG L+ I+ V+ GE +A++GPSGCGK+TLL + G +G + +G+P
Sbjct: 10 YGGGG--GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEP 67
Query: 115 FSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE 174
+ G+V Q+D L P+LTV + + LQ + E + AE ++ +GLS
Sbjct: 68 V-TGPGPDRGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSG 123
Query: 175 CKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLA 234
+N+ P +SGG R+RV++ + + ++P +L LDEP S LD+ +Q+ LL +
Sbjct: 124 FENAY---P--HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIW 178
Query: 235 NG-GRTIVMTIH 245
G+T+++ H
Sbjct: 179 RETGKTVLLVTH 190
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 8e-27
Identities = 61/200 (30%), Positives = 102/200 (51%), Gaps = 13/200 (6%)
Query: 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQM-TRNTG 124
IL ++ + GE++A+ G +G GKTTL L G + +G I NGKP + ++ G
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIG 74
Query: 125 FVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPL 184
+V Q+ Y T+++ LL L E+ E V+ +L L K PL
Sbjct: 75 YVMQD---VDYQLFTDSVREELLLGLKELDAGNEQA---ETVLKDLDLYALKERH---PL 125
Query: 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTI 244
+ +SGG+++R++I +L LL DEPTSGLD +++ ++ +LA G+ +++
Sbjct: 126 S--LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVIT 183
Query: 245 HQPSNMLYYMFHKVLLLSEG 264
H + +VLLL+ G
Sbjct: 184 HDYEFLAKVC-DRVLLLANG 202
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (271), Expect = 1e-26
Identities = 60/200 (30%), Positives = 110/200 (55%), Gaps = 24/200 (12%)
Query: 55 YGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN-GRITYNGK 113
+G + +LKGI+ V+ GE++ ++GPSG GK+TLL L G L + G IT +G+
Sbjct: 12 FGDKE------VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG-LEEPDSGSITVDGE 64
Query: 114 PFS-----NQMTRNTGFVTQEDVLSPYLTVTETMVF--TALLQLPNSFTEKEKIKCAEAV 166
++ R G V Q+ L P+LTV E + + +L + E + A +
Sbjct: 65 DVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLS----KAEAREKALEL 120
Query: 167 MTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQI 226
+ ++GL++ ++ P +SGG+++RV+I + + ++P ++ DEPTS LD + ++
Sbjct: 121 LEKVGLADKADAY---P--AQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEV 175
Query: 227 LSILLKLANGGRTIVMTIHQ 246
L ++ LA G T+++ H+
Sbjct: 176 LDVMKDLAEEGMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-26
Identities = 62/212 (29%), Positives = 106/212 (50%), Gaps = 18/212 (8%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP--- 114
+KK +K IL + ++ G+M A++G SG GK+TLL +G +G++ NG+
Sbjct: 5 SKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPP 64
Query: 115 ----FSNQMTRNT-GFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTE 169
+++ R G++ Q L TV E + L S EK + K + + +
Sbjct: 65 LNSKKASKFRREKLGYLFQNFALIENETVEENLDL-GLKYKKLSKKEKREKK--KEALEK 121
Query: 170 LGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSI 229
+GL+ I +SGGE++RV++ + IL P L+ DEPT LD ++L +
Sbjct: 122 VGLNLKLKQKI-----YELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDL 176
Query: 230 LLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261
LL+L + G+TI++ H P + +V+ L
Sbjct: 177 LLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 3e-26
Identities = 55/204 (26%), Positives = 88/204 (43%), Gaps = 20/204 (9%)
Query: 76 PGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF---SNQMT-----RNTGFVT 127
E+ + G SG GK+TLL + G G I NG ++ R G V
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 128 QEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRG 187
Q+ L P+L V E + F + E + ++ LGL N
Sbjct: 82 QQYALFPHLNVRENLAFGLKRKRNR-----EDRISVDELLDLLGLDHLLNRYPAQ----- 131
Query: 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL-ANGGRTIVMTIHQ 246
+SGGE++RV++ + + P LL LDEP S LD + Q+L L ++ N ++ H
Sbjct: 132 LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHD 191
Query: 247 PSNMLYYMFHKVLLLSEGYPLYSG 270
S Y+ +++++ +G Y G
Sbjct: 192 LSEA-EYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 7e-26
Identities = 60/230 (26%), Positives = 103/230 (44%), Gaps = 64/230 (27%)
Query: 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG 98
++F+++ + Y K +LK ++ +KPGE +A++GPSG GK+TLL L
Sbjct: 1 IEFKNVSFS-------YPGR----PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLL 49
Query: 99 GRLGRINGRITYNGKPFSN----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSF 154
+G I +G + + +N +V Q+ P+L F S
Sbjct: 50 RLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQD----PFL-------F--------SG 90
Query: 155 TEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEP 214
T +E I +SGG+R+R++I + +L +P +L LDE
Sbjct: 91 TIRENI---------------------------LSGGQRQRIAIARALLRDPPILILDEA 123
Query: 215 TSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
TS LD IL L LA G+T+++ H+ S + ++++L +G
Sbjct: 124 TSALDPETEALILEALRALA-KGKTVIVIAHRLSTIR--DADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 8e-26
Identities = 62/208 (29%), Positives = 106/208 (50%), Gaps = 18/208 (8%)
Query: 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN------- 117
A L ++ ++ GE L + GPSG GKTTLL L G L G++ G+ +
Sbjct: 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLP 75
Query: 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQ-LPNSFTEKEKIKCAEAVMTELGLSECK 176
+ R G V Q+ L P TV E + ++ ++ A + ++GL
Sbjct: 76 LLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRR----VGAALRQVGLEHKA 131
Query: 177 NSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG 236
++ P +SGGE++RV+I + I+ +P LL DEPT LD ++++IL +L +L
Sbjct: 132 DAF---PEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKR 186
Query: 237 GRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
G T+++ H S ++ + H+V++L +G
Sbjct: 187 GTTVIVATHDLS-LVDRVAHRVIILDDG 213
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-25
Identities = 65/221 (29%), Positives = 111/221 (50%), Gaps = 24/221 (10%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN---- 117
KA LK ++ ++ GE + ++GP+G GK+TLL L G L +G + +G S+
Sbjct: 15 GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSL 74
Query: 118 -QMTRNTGFVTQEDVLSPYL-----TVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELG 171
++ + G V Q +P TV + + F L L +E + + +G
Sbjct: 75 LELRQKVGLVFQ----NPDDQLFGPTVEDEVAF-GLENLG--LPREEIEERVAEALELVG 127
Query: 172 LSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL 231
L E + +SGG+++RV+I + + P +L LDEPT+GLD +++L +L
Sbjct: 128 LEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLK 182
Query: 232 KLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271
KL GG+TI++ H +L Y +V++L +G L G+
Sbjct: 183 KLKEEGGKTIIIVTHDLELVLEYA-DRVVVLDDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-25
Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 30/204 (14%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGG----RLGRINGRITYNGKPFS- 116
++ ++ V+PGE+L ++G SG GK+TL AL G +G + +G+
Sbjct: 20 GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLG 79
Query: 117 ---NQMT----RNTGFVTQE--DVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVM 167
+M + + Q+ L+P +T+ + L+L + E K A ++
Sbjct: 80 LSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGD--QIREALRLHGKGSRAEARKRAVELL 137
Query: 168 TELGLSECKNSLIGGPLTRG-----VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTI 222
++GL + P R +SGG R+RV I + + P LL DEPT+ LD T
Sbjct: 138 EQVGLPD--------PERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTT 189
Query: 223 AQQILSILLKL-ANGGRTIVMTIH 245
QIL +L L G ++ H
Sbjct: 190 QAQILDLLKDLQRELGMAVLFITH 213
|
Length = 539 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 102 bits (258), Expect = 3e-25
Identities = 59/196 (30%), Positives = 109/196 (55%), Gaps = 15/196 (7%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN-GRITYNGKPFS 116
+K + +LKGI VK GE++ ++GPSG GK+TLL + L + G I +G +
Sbjct: 7 HKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCIN-LLEEPDSGTIIIDGLKLT 65
Query: 117 ------NQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTEL 170
N++ + G V Q+ L P+LTV E + A +++ ++ E + A ++ ++
Sbjct: 66 DDKKNINELRQKVGMVFQQFNLFPHLTVLENITL-APIKVKGM-SKAEAEERALELLEKV 123
Query: 171 GLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSIL 230
GL++ ++ +SGG+++RV+I + + +NP ++ DEPTS LD + ++L ++
Sbjct: 124 GLADKADAYPAQ-----LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVM 178
Query: 231 LKLANGGRTIVMTIHQ 246
LA G T+V+ H+
Sbjct: 179 KDLAEEGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 7e-25
Identities = 69/288 (23%), Positives = 120/288 (41%), Gaps = 43/288 (14%)
Query: 8 ANDINEAQTDQKEDQLLEASDVFTRAKHPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAIL 67
A D + + P+ + E++ ++ Y + K L
Sbjct: 290 AADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFR-------YP-----DGKPAL 337
Query: 68 KGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----QMTRNT 123
+ +K G++ A++G SG GK+TLL L G L G I NG + +
Sbjct: 338 SDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQI 397
Query: 124 GFVTQEDVLSPYL---TVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLI 180
+V+Q +PYL T+ E ++ +++E I + GL E
Sbjct: 398 SWVSQ----NPYLFAGTIRENILLAR-----PDASDEEIIAALDQA----GLLEFVPKPD 444
Query: 181 G-----GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN 235
G G G+SGG+ +R+++ + +L SLL LDEPT+ LD+ Q IL L +LA
Sbjct: 445 GLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK 504
Query: 236 GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG---EASGAMNYFA 280
+T+++ H+ + ++++L G + G E S +A
Sbjct: 505 -QKTVLVITHRLEDAADA--DRIVVLDNGRLVEQGTHEELSEKQGLYA 549
|
Length = 559 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 7e-25
Identities = 61/219 (27%), Positives = 101/219 (46%), Gaps = 18/219 (8%)
Query: 59 KKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ 118
K +LK + ++ GE + +LGPSGCGK+TLL + G +G I +G+ ++
Sbjct: 11 KSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDL 70
Query: 119 MT--RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKI--KCAEAVMTELGLSE 174
R V Q L P++TV E + F L K +I + E LGL
Sbjct: 71 PPEKRGIAMVFQNYALYPHMTVYENIAFG----LKLRGVPKAEIDKRVKEVAKL-LGLEH 125
Query: 175 CKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL- 233
N +SGG+R+RV++ + ++ P + LDEP S LD+ + + S + KL
Sbjct: 126 LLNRKP-----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLH 180
Query: 234 ANGGRTIVMTIH-QPSNMLYYMFHKVLLLSEGYPLYSGE 271
G T + H Q M + +++++++G G
Sbjct: 181 ERLGTTTIYVTHDQVEAMT--LADRIVVMNDGRIQQVGT 217
|
Length = 338 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 8e-25
Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 16/209 (7%)
Query: 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN------ 117
+ L+ ++ + GE + + GPSG GK+TLL + G G+I NG S
Sbjct: 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREI 74
Query: 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK 176
+ R G V Q+ L P TV E + + +E + V+ +GL
Sbjct: 75 PFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKA 131
Query: 177 NSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG 236
+L P +SGGE++RV+I + I+ P++L DEPT LD ++ +I+ + ++
Sbjct: 132 RAL---PSQ--LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRL 186
Query: 237 GRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265
G T++M H ++ M H+VL L +G
Sbjct: 187 GTTVLMATHD-LELVNRMRHRVLALEDGR 214
|
Length = 223 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 1e-24
Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 19/194 (9%)
Query: 60 KIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG---RINGRITYNGKPF- 115
++ +L + + GE++ ++GPSGCGK+TLL+ + G L G + N +
Sbjct: 11 RLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLD 70
Query: 116 ---SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGL 172
+ Q R G + Q+ +L P+L+V + ++F LP + + A A + GL
Sbjct: 71 MLPAAQ--RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGL 124
Query: 173 SECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL- 231
+ P T +SGG+R RV++ + +L P L LDEP S LD + Q +
Sbjct: 125 DGAFHQD---PAT--LSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFS 179
Query: 232 KLANGGRTIVMTIH 245
++ G V H
Sbjct: 180 EVRAAGIPTVQVTH 193
|
Length = 213 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 14/193 (7%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS- 116
+K + + I+ +K GE + +LGPSGCGKTTLL + G +G I +G+ +
Sbjct: 12 SKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITD 71
Query: 117 ---NQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS 173
+ R G V Q L P++TV E + F L++ + E E + +GL
Sbjct: 72 VPPEK--RPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLE 127
Query: 174 ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL 233
+ +SGG+++RV++ + ++ P +L LDEP S LD+ + +Q+ L +L
Sbjct: 128 GFADRKP-----HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKEL 182
Query: 234 A-NGGRTIVMTIH 245
G T V H
Sbjct: 183 QRELGITFVYVTH 195
|
Length = 352 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 1e-24
Identities = 57/183 (31%), Positives = 95/183 (51%), Gaps = 10/183 (5%)
Query: 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNT 123
++ L+ ++ + GE++ +LGPSGCGKTTLL + G + G I NG+
Sbjct: 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAER- 76
Query: 124 GFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGP 183
G V Q + L P+L V + + F LQL + ++ + A ++ +GL ++ I
Sbjct: 77 GVVFQNEALLPWLNVIDNVAFG--LQL-RGIEKAQRREIAHQMLALVGLEGAEHKYIW-- 131
Query: 184 LTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVM 242
+SGG R+RV I + + + P LL LDEP LD+ +Q+ +LL L G+ +++
Sbjct: 132 ---QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLL 188
Query: 243 TIH 245
H
Sbjct: 189 ITH 191
|
Length = 259 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-24
Identities = 54/197 (27%), Positives = 103/197 (52%), Gaps = 24/197 (12%)
Query: 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN-------Q 118
LK + + GEM+A++GPSG GK+TLL +L G + +G I +NG + +
Sbjct: 19 ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRK 78
Query: 119 MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP------NSFTEKEKIKCAEAVMTELGL 172
+ R+ G + Q+ L P L+V E ++ L F++++K + +A + +G+
Sbjct: 79 LRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDA-LERVGI 137
Query: 173 SECKNSLIGGPLTRG--VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSIL 230
+ R +SGG+++RV+I + ++ P ++ DEP + LD A++++ IL
Sbjct: 138 LD-------KAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDIL 190
Query: 231 LKLA-NGGRTIVMTIHQ 246
+ G T+++ +HQ
Sbjct: 191 KDINQEDGITVIVNLHQ 207
|
Length = 258 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 4e-24
Identities = 65/222 (29%), Positives = 109/222 (49%), Gaps = 21/222 (9%)
Query: 61 IEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--- 117
+ + +L G++ ++PGE+LA+LGP+G GK+TLL AL G L +G +T NG P ++
Sbjct: 11 LAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPP 70
Query: 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTAL-LQLPNSFTEKEKIKCAEAVMTELGLSEC 175
++ R+ + Q L+ TV E + + + E E+I A + LS
Sbjct: 71 EELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERI--AAQALAATDLSGL 128
Query: 176 KNSLIGGPLTRGVSGGERKRVSIGQ------EILINPSLLFLDEPTSGLDSTIAQQILSI 229
R +SGGE++RV + + + + LFLDEPTS LD L +
Sbjct: 129 AGRDY-----RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRL 183
Query: 230 LLKLANGGRTIVMTIHQPSNMLYYMF-HKVLLLSEGYPLYSG 270
+LA G ++ +H + L + +++LL +G + SG
Sbjct: 184 ARQLAREGGAVLAVLHDLN--LAAQYADRIVLLHQGRVIASG 223
|
Length = 259 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 4e-24
Identities = 56/211 (26%), Positives = 100/211 (47%), Gaps = 35/211 (16%)
Query: 55 YGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP 114
Y + K+ LK I + PGE +A++GPSG GK+TLL + + +G I G
Sbjct: 11 YPNGKQA-----LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTD 65
Query: 115 FSN-------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP------NSFTEKEKIK 161
+ ++ R G + Q L LTV E ++ L P F+E++K +
Sbjct: 66 ITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKER 125
Query: 162 CAEAVMTELGLSE-----CKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTS 216
A + + +GL++ +SGG+++RV+I + + P L+ DEP +
Sbjct: 126 -ALSALERVGLADKAYQRADQ----------LSGGQQQRVAIARALAQQPDLILADEPIA 174
Query: 217 GLDSTIAQQILSILLKLA-NGGRTIVMTIHQ 246
LD ++Q++ L ++ G T+++ +HQ
Sbjct: 175 SLDPKTSKQVMDYLKRINKEDGITVIINLHQ 205
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 6e-24
Identities = 63/206 (30%), Positives = 101/206 (49%), Gaps = 18/206 (8%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN-------QM 119
L GI + GE + ++GPSG GK+TLL + +G I NG+ S+ +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 120 TRNTGFVTQEDVLSPYLTVTETMVFT-ALLQLPNSFTEKEKIKCAEAVMTELGLSECKNS 178
R G V Q+ L P V E + F + +P +E K A + +GLS +
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYENVAFALEVTGVP----PREIRKRVPAALELVGLSHKHRA 132
Query: 179 LIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGR 238
L +SGGE++RV+I + I+ +P++L DEPT LD +I+++L K+ G
Sbjct: 133 L-----PAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGT 187
Query: 239 TIVMTIHQPSNMLYYMFHKVLLLSEG 264
T+V+ H ++ H+V+ L G
Sbjct: 188 TVVVATHA-KELVDTTRHRVIALERG 212
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 6e-24
Identities = 62/194 (31%), Positives = 98/194 (50%), Gaps = 21/194 (10%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS----- 116
+LKG+ + GE+LA+LG +G GK+TLL L G L +G + +G+P
Sbjct: 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKG 62
Query: 117 -NQMTRNTGFVTQ---EDVLSPYLTVTETMVFTAL-LQLPNSFTEKEKIKCAEAVMTELG 171
+ + G V Q + + + V + + F L L L E E + +T +G
Sbjct: 63 LLERRQRVGLVFQDPDDQLFAA--DVDQDVAFGPLNLGLS----EAEVERRVREALTAVG 116
Query: 172 LSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL 231
S + T +SGGE+KRV+I + + P +L LDEPT+GLD +Q+L+IL
Sbjct: 117 ASGLRERP-----THCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILR 171
Query: 232 KLANGGRTIVMTIH 245
+L G T+V++ H
Sbjct: 172 RLRAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 9e-24
Identities = 44/135 (32%), Positives = 81/135 (60%), Gaps = 4/135 (2%)
Query: 315 EQKMLEKEIPSGMYRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLF 374
E+ +LE+E+ S +Y SAY +++I+ +LPI L+ +F+ I Y+M GL + FF L
Sbjct: 78 ERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLIVYFMVGLPVSR--FFLFLL 135
Query: 375 VLLFSVLVSQGLGLAIGAMVMEQKSATILGSIIMQLFVLAGGYY--VQNVPSFIAWIEYL 432
VLL + L + GLGL I A+ + A+ +G +++ +L G++ V ++P ++ WI YL
Sbjct: 136 VLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLLSGFFIPVDSMPGWLQWIYYL 195
Query: 433 SIGHHTYKLLLGSQY 447
+ + + L +++
Sbjct: 196 NPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 1e-23
Identities = 71/215 (33%), Positives = 103/215 (47%), Gaps = 28/215 (13%)
Query: 45 VYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI 104
I+++ G K ++ IL G+ V GE+LA+LG SG GK+TLL + G L
Sbjct: 6 EPLIEVR----GVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD 61
Query: 105 NGRITYNGKPFSN-------QMTRNTGFVTQEDVLSPYLTVTETMVFT--ALLQLPNSFT 155
G I +G+ ++ + G + Q+ L LTV E + F +LP S
Sbjct: 62 KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLI 121
Query: 156 EK---EKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLD 212
+ K+ E V GL L L SGG RKRV++ + I ++P LLFLD
Sbjct: 122 RELVLMKL---ELV----GLRGAAADLYPSEL----SGGMRKRVALARAIALDPELLFLD 170
Query: 213 EPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQ 246
EPTSGLD A I ++ +L + G T++M H
Sbjct: 171 EPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD 205
|
Length = 263 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 1e-23
Identities = 63/231 (27%), Positives = 108/231 (46%), Gaps = 9/231 (3%)
Query: 50 MKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRIT 109
M G K +K + I+ V PGE+ +LGP+G GKTT + G L G IT
Sbjct: 1 MALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEIT 60
Query: 110 YNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTE 169
+NG P S ++ G++ +E L P +TV + + + A L+ + E K +A +
Sbjct: 61 WNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLER 117
Query: 170 LGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSI 229
L + K I + +S G ++++ ++ P LL LDEP SGLD + +
Sbjct: 118 LEIVGKKTKKI-----KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDA 172
Query: 230 LLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNYFA 280
+ +L G TI+ + H+ + + + ++L+L +G + G F
Sbjct: 173 IFELKEEGATIIFSSHRMEH-VEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222
|
Length = 300 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 1e-23
Identities = 62/192 (32%), Positives = 92/192 (47%), Gaps = 17/192 (8%)
Query: 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ------- 118
ILKG+ +VK GE +A++GPSG GK+TLL L G +G + G+P
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 119 -MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKN 177
R+ GFV Q L P LT E + L+ +S + A+A++ +GL +
Sbjct: 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAG---AKALLEAVGLGKRLT 141
Query: 178 SLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG- 236
+SGGE++RV++ + P +LF DEPT LD +I +L L
Sbjct: 142 HYPAQ-----LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRER 196
Query: 237 GRTIVMTIHQPS 248
G T+V+ H P
Sbjct: 197 GTTLVLVTHDPQ 208
|
Length = 228 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 98.3 bits (246), Expect = 2e-23
Identities = 61/214 (28%), Positives = 106/214 (49%), Gaps = 16/214 (7%)
Query: 59 KKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117
K + +LKG+ V+ GE+LA++GPSG GK+TLL + G L +G + +G+ S
Sbjct: 8 KSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGL 67
Query: 118 ------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELG 171
++ R G + Q L LTV E + F L+ +E+E + + +G
Sbjct: 68 SEAELYRLRRRMGMLFQSGALFDSLTVFENVAF--PLREHTRLSEEEIREIVLEKLEAVG 125
Query: 172 LSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL 231
L ++ +SGG +KRV++ + + ++P LL DEPT+GLD + I ++
Sbjct: 126 LRGAEDL-----YPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIR 180
Query: 232 KL-ANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
L G T +M H + + + ++ +L +G
Sbjct: 181 SLKKELGLTSIMVTHD-LDTAFAIADRIAVLYDG 213
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 3e-23
Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 17/217 (7%)
Query: 56 GSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115
K+ L I+ +K GE++A+LGPSG GK+TLL + G GRI NG+
Sbjct: 7 NVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVL 66
Query: 116 SN-----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQL--PNSFTEKEKIKCAEAVMT 168
+ R GFV Q L P++TV + + F ++ P+ + +++
Sbjct: 67 FDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVE------- 119
Query: 169 ELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILS 228
EL L + + +SGG+R+RV++ + + + P +L LDEP LD+ + +++
Sbjct: 120 EL-LRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRR 178
Query: 229 ILLKL-ANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
L KL G T V H + +V++L++G
Sbjct: 179 WLRKLHDRLGVTTVFVTHDQ-EEALELADRVVVLNQG 214
|
Length = 345 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 97.3 bits (243), Expect = 3e-23
Identities = 64/218 (29%), Positives = 114/218 (52%), Gaps = 18/218 (8%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117
K+ +K L G++ + PG M +LGP+G GKTTL+ L +G I +G+
Sbjct: 7 TKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLK 65
Query: 118 QMT---RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE 174
Q R G++ QE + P TV E + + A L+ S K ++ + V+ + L +
Sbjct: 66 QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARV---DEVLELVNLGD 122
Query: 175 CKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQI--LSILLK 232
IG +SGG R+RV I Q ++ +PS+L +DEPT+GLD ++I ++L +
Sbjct: 123 RAKKKIGS-----LSGGMRRRVGIAQALVGDPSILIVDEPTAGLD--PEERIRFRNLLSE 175
Query: 233 LANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270
L R ++++ H ++ + ++V +L++G ++ G
Sbjct: 176 LGE-DRIVILSTHIVEDVE-SLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 7e-23
Identities = 59/203 (29%), Positives = 97/203 (47%), Gaps = 43/203 (21%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTR 121
+E+ +LK ++ +K GE +A+LG SG GK+TLL L G L G IT +G P S+
Sbjct: 13 QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL--- 69
Query: 122 NTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIG 181
E LS ++V L Q P F ++ +
Sbjct: 70 -------EKALSSLISV--------LNQRPYLF----------------------DTTLR 92
Query: 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIV 241
L R SGGER+R+++ + +L + ++ LDEPT GLD +Q+LS++ ++ +T++
Sbjct: 93 NNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK-DKTLI 151
Query: 242 MTIHQPSNMLYYMFHKVLLLSEG 264
H + + + K+L L G
Sbjct: 152 WITHHLTGIEH--MDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 9e-23
Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 23/200 (11%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITYNGKP-FS 116
+K LK I+ + GE+ A++GPSGCGK+TLL L G + +GK +
Sbjct: 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYD 71
Query: 117 NQMT-----RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELG 171
+ R G V Q+ P ++ + + + L E ++ E + +
Sbjct: 72 LDVDVLELRRRVGMVFQKPNPFP-GSIYDNVAYGLRLHGIKLKEELDER--VEEALRKAA 128
Query: 172 LS-ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSIL 230
L E K+ L G+SGG+++R+ + + + P +L LDEPTS LD +I ++
Sbjct: 129 LWDEVKDRLHA----LGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELI 184
Query: 231 LKLANGGRTIVMTIHQPSNM 250
+L TIV+ H NM
Sbjct: 185 AELKK-EYTIVIVTH---NM 200
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 1e-22
Identities = 65/204 (31%), Positives = 111/204 (54%), Gaps = 23/204 (11%)
Query: 59 KKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTAL-------GGRLGRINGRITYN 111
KK + +L GI VKPGE++A++GPSG GKTTLL + G + R+ G IT +
Sbjct: 11 KKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTI-RV-GDITID 68
Query: 112 G-KPFSNQ------MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAE 164
+ S Q + ++ GFV Q L P+ TV E ++ ++ ++E A
Sbjct: 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIV--KGEPKEEATARAR 126
Query: 165 AVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQ 224
++ ++GL+ + S R +SGG+++RV+I + + + P ++ DEPTS LD +
Sbjct: 127 ELLAKVGLAGKETSY-----PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVG 181
Query: 225 QILSILLKLANGGRTIVMTIHQPS 248
++L+ + +LA RT+V+ H+ S
Sbjct: 182 EVLNTIRQLAQEKRTMVIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 1e-22
Identities = 53/192 (27%), Positives = 93/192 (48%), Gaps = 11/192 (5%)
Query: 59 KKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ 118
K+ K + + ++ GE L ++GPSG GKTT L + + +G I +G+ S+
Sbjct: 9 KRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDL 68
Query: 119 ----MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE 174
+ R G+V Q+ L P+LTV E + L + ++ K A+ ++ +GL
Sbjct: 69 DPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDP 125
Query: 175 CKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL- 233
S +SGG+++RV + + + +P +L +DEP LD +Q+ + +L
Sbjct: 126 ---SEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQ 182
Query: 234 ANGGRTIVMTIH 245
G+TIV H
Sbjct: 183 KELGKTIVFVTH 194
|
Length = 309 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.0 bits (245), Expect = 1e-22
Identities = 59/221 (26%), Positives = 106/221 (47%), Gaps = 32/221 (14%)
Query: 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL----GRI-NGRITYNGKPFSN--- 117
+ G++ +K GE+L ++G SG GK+ L A+ G L RI G I ++GK +
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 118 -QMTRNTG----FVTQE--DVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTEL 170
++ + G + Q+ L+P +T+ + + L ++KE + A ++ +
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIA-EVLRLHGKGLSKKEAKERAIELLELV 138
Query: 171 GLSECKNSLIGGPLTRG------VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQ 224
G+ + P R +SGG R+RV I + +NP LL DEPT+ LD T+
Sbjct: 139 GIPD--------PERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQA 190
Query: 225 QILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
QIL +L +L G +++ H ++ + +V ++ G
Sbjct: 191 QILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMYAG 230
|
Length = 316 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 2e-22
Identities = 64/290 (22%), Positives = 116/290 (40%), Gaps = 71/290 (24%)
Query: 25 EASDVFTRAKHPVT-----------------------------LKFEDIVYKIKMKKGFY 55
++ + +HP T L ++ + +KG +
Sbjct: 238 PTEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLF 297
Query: 56 GSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115
+ E + ++ ++ GE L ++G SG GK+TL L G L +G I ++G+
Sbjct: 298 VRERG--EVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDL 355
Query: 116 SN------------QMTRNTGFVTQEDVLSPYLTVTETMVFTAL---LQLPNSFTEKEKI 160
QM F L+P +TV L L++ + E+
Sbjct: 356 DLTGGELRRLRRRIQM----VFQDPYSSLNPRMTV-----GDILAEPLRIHGGGSGAERR 406
Query: 161 KCAEAVMTELGLSECKNSLIGGPLTR---GVSGGERKRVSIGQEILINPSLLFLDEPTSG 217
++ +GL L R +SGG+R+RV+I + + + P LL LDEP S
Sbjct: 407 ARVAELLELVGLPP-------EFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSA 459
Query: 218 LDSTIAQQILSILLKL-ANGGRTIVMTIHQPSNM--LYYMFHKVLLLSEG 264
LD ++ Q+L++L L G T + H ++ + Y+ +V ++ +G
Sbjct: 460 LDVSVQAQVLNLLKDLQEELGLTYLFISH---DLAVVRYIADRVAVMYDG 506
|
Length = 539 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.0 bits (240), Expect = 2e-22
Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 30/185 (16%)
Query: 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----QM 119
+ +L ++ ++PGE++A+LGP+G GK+TLL AL G L +G + NG+P ++ ++
Sbjct: 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAEL 74
Query: 120 TRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSL 179
R + Q LS TV E + A+ + P+ + E A + ++ L+
Sbjct: 75 ARRRAVLPQHSSLSFPFTVEEVV---AMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRD 131
Query: 180 IGGPLTRGVSGGERKRV----------SIGQEILINPSLLFLDEPTSGLDSTIAQQILSI 229
+SGGE++RV P L LDEPTS LD +A Q
Sbjct: 132 Y-----PQLSGGEQQRVQLARVLAQLWEPDGP----PRWLLLDEPTSALD--LAHQH--H 178
Query: 230 LLKLA 234
+L+LA
Sbjct: 179 VLRLA 183
|
Length = 258 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 3e-22
Identities = 68/202 (33%), Positives = 110/202 (54%), Gaps = 11/202 (5%)
Query: 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNT 123
K L+ I ++ GE+L +LGPSGCGKTTLL + G + +G IT +GKP
Sbjct: 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAER- 72
Query: 124 GFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGP 183
G V Q + L P+ V + + F LQL + ++++ A ++ ++GL + I
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFG--LQLA-GVEKMQRLEIAHQMLKKVGLEGAEKRYIW-- 127
Query: 184 LTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL-ANGGRTIVM 242
+SGG+R+RV I + + NP LL LDEP LD+ +Q+ ++LLKL G+ +++
Sbjct: 128 ---QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLL 184
Query: 243 TIHQPSNMLYYMFHKVLLLSEG 264
H + +M +++LLS G
Sbjct: 185 ITHDIEEAV-FMATELVLLSPG 205
|
Length = 255 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 95.3 bits (237), Expect = 3e-22
Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 10/169 (5%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ--MTRNTG 124
L + V G ++A+LGPSG GK+TLL + G +GRI NG+ + R G
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG 75
Query: 125 FVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPL 184
FV Q L +LTV + + F ++ K ++ E ++ + L +G
Sbjct: 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARV---EELLELVQLEG-----LGDRY 127
Query: 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL 233
+SGG+R+RV++ + + + P +L LDEP LD+ + +++ S L KL
Sbjct: 128 PNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKL 176
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 3e-22
Identities = 58/193 (30%), Positives = 105/193 (54%), Gaps = 21/193 (10%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN-GRITYNGKPFS----N 117
+ +LK ++ + G+ +A++GPSG GK+T+L L R ++ G I +G+ +
Sbjct: 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLF-RFYDVSSGSILIDGQDIREVTLD 71
Query: 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTE---LGLSE 174
+ R G V Q+ VL +T+ + P++ T++E I+ A+A + +
Sbjct: 72 SLRRAIGVVPQDTVL-----FNDTIGYNIRYGRPDA-TDEEVIEAAKAAQIHDKIMRFPD 125
Query: 175 CKNSLIGGPLTRGV--SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLK 232
++++G RG+ SGGE++RV+I + IL NP +L LDE TS LD+ ++I + L
Sbjct: 126 GYDTIVG---ERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRD 182
Query: 233 LANGGRTIVMTIH 245
++ GRT ++ H
Sbjct: 183 VSK-GRTTIVIAH 194
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 4e-22
Identities = 53/188 (28%), Positives = 97/188 (51%), Gaps = 8/188 (4%)
Query: 59 KKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ 118
K+ L I+ V+ GE+ +LGP+G GKTT + + G + +G + ++GKP
Sbjct: 8 KRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIA 67
Query: 119 MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNS 178
G++ +E L P + V + +V+ A L+ ++E + + + L LSE N
Sbjct: 68 ARNRIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANK 124
Query: 179 LIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGR 238
+ +S G +++V ++ +P LL LDEP SGLD + + ++ +LA G+
Sbjct: 125 RV-----EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGK 179
Query: 239 TIVMTIHQ 246
T++++ HQ
Sbjct: 180 TVILSTHQ 187
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 94.0 bits (235), Expect = 5e-22
Identities = 59/184 (32%), Positives = 92/184 (50%), Gaps = 18/184 (9%)
Query: 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMT----- 120
IL G++ V GE++A+LG +G GKTTLL + G L +G I ++G+ +
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74
Query: 121 RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTEL--GLSECKNS 178
G+V + + P LTV E L L + K K + EL L E +
Sbjct: 75 AGIGYVPEGRRIFPELTVEEN------LLLGAYARRRAKRKARLERVYELFPRLKERRKQ 128
Query: 179 LIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGR 238
L G L SGGE++ ++I + ++ P LL LDEP+ GL I ++I + +L + G
Sbjct: 129 L-AGTL----SGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGV 183
Query: 239 TIVM 242
TI++
Sbjct: 184 TILL 187
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 96.3 bits (240), Expect = 1e-21
Identities = 61/195 (31%), Positives = 94/195 (48%), Gaps = 19/195 (9%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117
K+ LK I+ VK GE + +LGPSGCGKTTLL + G + G I G+ +
Sbjct: 11 RKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITR 70
Query: 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTEL-GLSE 174
R+ G V Q L P LTV + + + L N + ++ A + +L GL
Sbjct: 71 LPPQKRDYGIVFQSYALFPNLTVADNIAYG----LKNRGMGRAEVAERVAELLDLVGLPG 126
Query: 175 CKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTI----AQQILSIL 230
+ G +SGG+++RV++ + + +P LL LDEP S LD+ + +I +
Sbjct: 127 SERKYPG-----QLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQ 181
Query: 231 LKLANGGRTIVMTIH 245
+L G T +M H
Sbjct: 182 RRL---GVTTIMVTH 193
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 2e-21
Identities = 63/209 (30%), Positives = 102/209 (48%), Gaps = 27/209 (12%)
Query: 42 EDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL 101
E++V K YG + + +G++ V+ GE+ +LGP+G GKTT + L L
Sbjct: 4 ENLVKK-------YGDFEAV------RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL 50
Query: 102 GRINGRITYNGKPF---SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQ-LPNSFTEK 157
+GR T G ++ R G V Q+ + LT E + A L +P + +
Sbjct: 51 KPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA-ERR 109
Query: 158 EKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSG 217
E+I + ++ +GL E + L+ + SGG R+R+ I + ++ P +LFLDEPT G
Sbjct: 110 ERI---DELLDFVGLLEAADRLV-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIG 161
Query: 218 LDSTIAQQILSILLKL-ANGGRTIVMTIH 245
LD + + KL G TI++T H
Sbjct: 162 LDPQTRAHVWEYIEKLKEEFGMTILLTTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 2e-21
Identities = 60/187 (32%), Positives = 92/187 (49%), Gaps = 21/187 (11%)
Query: 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP---FSNQMTRNT-GFVTQE 129
V PGE +A++GPSG GK+TLL L G + G I NG P R+ +V Q
Sbjct: 345 VPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQ- 403
Query: 130 DVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT---- 185
P+L T+ L P++ ++ E + E GL E +L G T
Sbjct: 404 ---HPFL-FAGTIAENIRLARPDA-SDAEIREALERA----GLDEFVAALPQGLDTPIGE 454
Query: 186 --RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMT 243
G+SGG+ +R+++ + L + LL LDEPT+ LD+ ++L L LA GRT+++
Sbjct: 455 GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ-GRTVLLV 513
Query: 244 IHQPSNM 250
H+ +
Sbjct: 514 THRLALA 520
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 2e-21
Identities = 51/169 (30%), Positives = 89/169 (52%), Gaps = 10/169 (5%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--QMTRNTG 124
LK ++ V+ G+ +LGP+G GK+ LL + G + +G+I NGK +N R+
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDIS 74
Query: 125 FVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPL 184
+V Q L P++TV + + + + + + K+ + LG+ N P
Sbjct: 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEM---LGIDHLLNR---KPE 128
Query: 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL 233
T +SGGE++RV+I + +++NP +L LDEP S LD +++ L K+
Sbjct: 129 T--LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKI 175
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 2e-21
Identities = 57/176 (32%), Positives = 93/176 (52%), Gaps = 16/176 (9%)
Query: 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF----SNQMT- 120
+LKG++ + GE++A++G SG GK+TLL LGG +G + +NG+ SN+
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79
Query: 121 ---RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKN 177
+ GF+ Q L P T E + L+ + KE + A ++ ++GL N
Sbjct: 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLI---GKKSVKEAKERAYEMLEKVGLEHRIN 136
Query: 178 SLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL 233
+SGGER+RV+I + ++ PSL+ DEPT LD+ A+ I ++L+L
Sbjct: 137 HRPSE-----LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLEL 187
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 2e-21
Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 13/183 (7%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ---MTRNT 123
++ ++ + GE+ +LG +G GKTTLL + L +G++T +G + R
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKI 77
Query: 124 GFVTQEDVLSPYLTVTET-MVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGG 182
G + E L LT E F L L + + L L E + +G
Sbjct: 78 GVLFGERGLYARLTARENLKYFARLNGLSRKEIKAR----IAELSKRLQLLEYLDRRVGE 133
Query: 183 PLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVM 242
S G +++V+I + ++ +PS+L LDEPTSGLD ++ + +L N GR ++
Sbjct: 134 -----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIF 188
Query: 243 TIH 245
+ H
Sbjct: 189 SSH 191
|
Length = 245 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 2e-21
Identities = 63/220 (28%), Positives = 112/220 (50%), Gaps = 14/220 (6%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNG----- 112
+K+ ++ ++ G++ VK GE++ +LGP+G GKTT + G + +G+I +G
Sbjct: 7 SKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITK 66
Query: 113 KPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGL 172
P + G++ QE + LTV E ++ A+L++ ++KE+ + E ++ E +
Sbjct: 67 LPMHKRARLGIGYLPQEASIFRKLTVEENIL--AVLEIRG-LSKKEREEKLEELLEEFHI 123
Query: 173 SECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLK 232
+ + S L SGGER+RV I + + NP L LDEP +G+D Q I I+
Sbjct: 124 THLRKSK-ASSL----SGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKI 178
Query: 233 LANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272
L + G +++T H L + + ++ EG L G
Sbjct: 179 LKDRGIGVLITDHNVRETL-SITDRAYIIYEGKVLAEGTP 217
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 2e-21
Identities = 56/183 (30%), Positives = 84/183 (45%), Gaps = 13/183 (7%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ---MTRNT 123
+ G+ V+ GE+ LGP+G GKTT + L L +G G + + R+
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSI 68
Query: 124 GFVTQEDVLSPYLTVTETMV-FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGG 182
G V Q + LT E + L LP + E + AE ++ L E + +G
Sbjct: 69 GIVPQYASVDEDLTGRENLEMMGRLYGLP----KDEAEERAEELLELFELGEAADRPVGT 124
Query: 183 PLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVM 242
SGG R+R+ I ++ P +LFLDEPT+GLD + I + L G TI++
Sbjct: 125 -----YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILL 179
Query: 243 TIH 245
T H
Sbjct: 180 TTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 2e-21
Identities = 52/192 (27%), Positives = 100/192 (52%), Gaps = 12/192 (6%)
Query: 59 KKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGK----- 113
K + + +++ ++ V GE++ +LGP+G GKTT + G + R G I + +
Sbjct: 11 KAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLL 70
Query: 114 PFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS 173
P + R G++ QE + L+V + ++ A+LQ+ + + +++ A +M E +
Sbjct: 71 PLHARARRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIE 128
Query: 174 ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL 233
++S+ + +SGGER+RV I + + NP + LDEP +G+D I I+ L
Sbjct: 129 HLRDSM-----GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHL 183
Query: 234 ANGGRTIVMTIH 245
+ G +++T H
Sbjct: 184 RDSGLGVLITDH 195
|
Length = 241 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 3e-21
Identities = 66/221 (29%), Positives = 104/221 (47%), Gaps = 17/221 (7%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMT- 120
K IL ++ V PGE A++GP+G GKTTLL+ L G +G +T G+ F T
Sbjct: 42 NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETI 101
Query: 121 ----RNTGFVTQE--DVLSPYLTVTETMV--FTALLQLPNSFTEKEKIKCAEAVMTELGL 172
+ G V+ E + TV + ++ F A + + E + A+ ++ LG
Sbjct: 102 FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGA 161
Query: 173 SECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLK 232
+ G +S GE++RV I + ++ +P LL LDEP GLD +Q+L+ L +
Sbjct: 162 KHLADRPFGS-----LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEE 216
Query: 233 LA--NGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271
LA G ++ H + F LLL EG + G+
Sbjct: 217 LAASPGAPALLFVTHHAEEIP-PCFTHRLLLKEGEVVAQGK 256
|
Length = 257 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 4e-21
Identities = 64/209 (30%), Positives = 100/209 (47%), Gaps = 23/209 (11%)
Query: 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP---FSNQMTRN 122
LK + GE +A+LG SG GK+TLL L G G IT NG Q R
Sbjct: 353 ALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRE 412
Query: 123 T-GFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIG 181
T +TQ +L T+ L P++ +++E + V GL + S
Sbjct: 413 TISVLTQ----RVHLFSG-TLRDNLRLANPDA-SDEELWAALQQV----GLEKLLESAPD 462
Query: 182 GPLT------RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN 235
G T R +SGGER+R+++ + +L + L LDEPT GLD +Q+L++L + A
Sbjct: 463 GLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA- 521
Query: 236 GGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
G+T++M H+ + ++++L G
Sbjct: 522 EGKTLLMVTHRLRGLER--MDRIIVLDNG 548
|
Length = 573 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.8 bits (229), Expect = 5e-21
Identities = 64/217 (29%), Positives = 107/217 (49%), Gaps = 21/217 (9%)
Query: 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ-----MT 120
L+G++ V+ GE++A+LG +G GKTTLL + G + +GRI ++G+ +
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR 77
Query: 121 RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFT-EKEKIKCAEAVMTEL--GLSECKN 177
+V + + P LTV E L L +KE + + EL L E +N
Sbjct: 78 LGIAYVPEGRRIFPRLTVEEN------LLLGAYARRDKEAQERDLEEVYELFPRLKERRN 131
Query: 178 SLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL-ANG 236
G L SGGE++ ++I + ++ P LL LDEP+ GL I ++I + +L G
Sbjct: 132 QR-AGTL----SGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEG 186
Query: 237 GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273
G TI++ + Q + + + +L G + SG A+
Sbjct: 187 GMTILL-VEQNARFALEIADRGYVLENGRIVLSGTAA 222
|
Length = 237 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 6e-21
Identities = 59/214 (27%), Positives = 102/214 (47%), Gaps = 23/214 (10%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS----N 117
++ +L+ ++ + PGE +A++G SG GK+TLL L G GRI +G +
Sbjct: 484 DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLA 543
Query: 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKN 177
+ R G+V Q+ L ++ E + P + E+ A G E
Sbjct: 544 SLRRQVGYVLQDPFLF-SGSIRENIALGN----PEATDEEIIEAAQLA-----GAHEFIE 593
Query: 178 SLIGGPLTR------GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL 231
+L G T +SGG+R+R+++ + +L P +L LDE TS LD IL LL
Sbjct: 594 NLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL 653
Query: 232 KLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265
++ GRT+++ H+ S + ++++L +G
Sbjct: 654 QIL-QGRTVIIIAHRLSTIRS--ADRIIVLDQGK 684
|
Length = 709 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 6e-21
Identities = 67/196 (34%), Positives = 104/196 (53%), Gaps = 27/196 (13%)
Query: 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS----NQMT 120
+L G++ + PGE +A+LGPSG GK+TLL L G L + G +T +G P S +++
Sbjct: 349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVR 408
Query: 121 RNTGFVTQEDVLSPYL---TVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKN 177
R Q+ +L TV E + L P++ T++E E V GL++
Sbjct: 409 RRVSVCAQD----AHLFDTTVRENL----RLARPDA-TDEELWAALERV----GLADWLR 455
Query: 178 SLIGG---PLTRG---VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL 231
+L G L G +SGGER+R+++ + +L + +L LDEPT LD+ A ++L LL
Sbjct: 456 ALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLL 515
Query: 232 KLANGGRTIVMTIHQP 247
A GRT+V+ H
Sbjct: 516 A-ALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 6e-21
Identities = 63/191 (32%), Positives = 89/191 (46%), Gaps = 13/191 (6%)
Query: 59 KKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ 118
K L G++ +K GE +LGPSGCGKTTLL + G +G I +GK +N
Sbjct: 8 KFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNL 67
Query: 119 MT--RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTEL-GLSEC 175
R V Q L P+LTV E + F L+L K +IK A +L L
Sbjct: 68 PPHKRPVNTVFQNYALFPHLTVFENIAFG--LRLKK--LPKAEIKERVAEALDLVQLEGY 123
Query: 176 KNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL-A 234
N +SGG+++RV+I + ++ P +L LDEP LD + + + L +L
Sbjct: 124 ANRKP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQK 178
Query: 235 NGGRTIVMTIH 245
G T V H
Sbjct: 179 ELGITFVFVTH 189
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 9e-21
Identities = 63/193 (32%), Positives = 99/193 (51%), Gaps = 19/193 (9%)
Query: 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQM----- 119
+IL G+ +VK GE +A++G SG GK+TLL L G +G ++ G+P QM
Sbjct: 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLH-QMDEEAR 82
Query: 120 ----TRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC 175
++ GFV Q +L P L E + ALL+ +S + A+A++ +LGL +
Sbjct: 83 AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNG---AKALLEQLGLGKR 139
Query: 176 KNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL-A 234
+ L P +SGGE++RV++ + P +LF DEPT LD +I +L L
Sbjct: 140 LDHL---PAQ--LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNR 194
Query: 235 NGGRTIVMTIHQP 247
G T+++ H
Sbjct: 195 EHGTTLILVTHDL 207
|
Length = 228 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 1e-20
Identities = 70/233 (30%), Positives = 114/233 (48%), Gaps = 30/233 (12%)
Query: 54 FYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTAL-------GGRLGRING 106
FYG+++ L IT GE L +LGPSG GK++LL L G L
Sbjct: 11 FYGAHQ------ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGN 64
Query: 107 RITYNGKPFSNQMT---RNTGFVTQEDVLSPYLTVTETMVFTALLQLP---NSFTEKEKI 160
++ P + RN G V Q+ L P+LTV + L++ P ++ + +
Sbjct: 65 HFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQN-----LIEAPCRVLGLSKDQAL 119
Query: 161 KCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDS 220
AE ++ L L + PL +SGG+++RV+I + +++ P +L DEPT+ LD
Sbjct: 120 ARAEKLLERLRLKPYADRF---PLH--LSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174
Query: 221 TIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273
I QI+SI+ +LA G T V+ H+ + +V+ + G+ + G+AS
Sbjct: 175 EITAQIVSIIRELAETGITQVIVTHE-VEVARKTASRVVYMENGHIVEQGDAS 226
|
Length = 242 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 1e-20
Identities = 53/207 (25%), Positives = 89/207 (42%), Gaps = 52/207 (25%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS----N 117
E +L+ ++ ++PGE LA++GPSG GK+TL + G L +GR+ +G S N
Sbjct: 13 AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPN 72
Query: 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKN 177
++ + G++ Q+D L S E N
Sbjct: 73 ELGDHVGYLPQDDEL-----------------FSGSIAE--------------------N 95
Query: 178 SLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGG 237
L SGG+R+R+ + + + NP +L LDEP S LD + + + L G
Sbjct: 96 IL---------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAG 146
Query: 238 RTIVMTIHQPSNMLYYMFHKVLLLSEG 264
T ++ H+P ++L+L +G
Sbjct: 147 ATRIVIAHRPE--TLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 93.1 bits (231), Expect = 1e-20
Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 15/214 (7%)
Query: 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGG--RLGRINGRITYNGKPFSN--QM 119
+L ++ ++ GE+LA++G SGCGKTTLL A+ G + + GRI + ++
Sbjct: 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH 77
Query: 120 TRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSL 179
R + Q L P+L V + + F Q E++ A+A+ +GL +
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERV--ADALKL-VGLGDA---- 130
Query: 180 IGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN--GG 237
L +SGG ++R++I + I I P +L LDEP S LD+ I + + L
Sbjct: 131 -AAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPE 189
Query: 238 RTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271
TI+ H + L + K ++ +G GE
Sbjct: 190 LTILCVTHDQDDAL-TLADKAGIMKDGRLAAHGE 222
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.1 bits (226), Expect = 2e-20
Identities = 68/213 (31%), Positives = 110/213 (51%), Gaps = 19/213 (8%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN------QMT 120
LKGI +K GE+ A+LG +G GK+TL L G L +GRI ++GKP ++
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 121 RNTGFVTQE-DVLSPYLTVTETMVFTAL-LQLPNSFTEKEKIKCAEAVMTELGLSECKNS 178
+ G V Q+ D +V + + F A+ L+LP E E K + + G+ K+
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLP----EDEVRKRVDNALKRTGIEHLKDK 137
Query: 179 LIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-G 237
P T +S G++KRV+I +++ P +L LDEPT+GLD +I+ +L+++ G
Sbjct: 138 ----P-THCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELG 192
Query: 238 RTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270
TI++ H + Y V ++ EG + G
Sbjct: 193 LTIIIATHDIDIVPLYC-DNVFVMKEGRVILQG 224
|
Length = 283 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 2e-20
Identities = 66/225 (29%), Positives = 108/225 (48%), Gaps = 34/225 (15%)
Query: 70 ITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS----NQMTRNTGF 125
++ V+ GE+L ++GP+G GK+TLL + G L +G I + G+P ++ R+ +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 126 VTQEDVLSPYLTVTETMVFTAL-LQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPL 184
++Q+ +P + VF L L P +K + + + + E+ + + L
Sbjct: 74 LSQQQ--TPPFAMP---VFQYLTLHQP----DKTRTEAVASALNEV----AEALGLDDKL 120
Query: 185 TRGV---SGGERKRVSIGQEIL-----INPS--LLFLDEPTSGLDSTIAQQIL--SILLK 232
R V SGGE +RV + +L INP+ LL LDEP + LD +AQQ +L +
Sbjct: 121 GRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD--VAQQAALDRLLSE 178
Query: 233 LANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMN 277
L G +VM+ H N +V LL +G L SG +
Sbjct: 179 LCQQGIAVVMSSHD-LNHTLRHADRVWLLKQGKLLASGRRDEVLT 222
|
Length = 248 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 2e-20
Identities = 63/212 (29%), Positives = 104/212 (49%), Gaps = 27/212 (12%)
Query: 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLT 95
PV L+ ED+ +K GF + ++ + GI+ ++ G+ L ++G SG GK+TL
Sbjct: 274 PVLLEVEDLRVWFPIKGGFLR--RTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGL 331
Query: 96 ALGGRLGRINGRITYNGKPFS----NQMT---RNTGFVTQE--DVLSPYLTVTETMVFTA 146
AL RL G I ++G+ +M R V Q+ LSP +TV + ++
Sbjct: 332 ALL-RLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQ-IIEEG 389
Query: 147 LLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRG-----VSGGERKRVSIGQE 201
L + E+ + + E+GL P TR SGG+R+R++I +
Sbjct: 390 LRVHEPKLSAAERDQRVIEALEEVGLD---------PATRNRYPHEFSGGQRQRIAIARA 440
Query: 202 ILINPSLLFLDEPTSGLDSTIAQQILSILLKL 233
+++ P L+ LDEPTS LD ++ Q+L +L L
Sbjct: 441 LILKPELILLDEPTSALDRSVQAQVLDLLRDL 472
|
Length = 534 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 2e-20
Identities = 59/196 (30%), Positives = 97/196 (49%), Gaps = 16/196 (8%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117
K +K +L I+ VK GE+ LGP+G GKTT + + G + +G IT++GK +
Sbjct: 7 TKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK 66
Query: 118 QMT--RNTGFVTQEDVLSPYLTVTETMVFTA-LLQLPNSFTEKEKIKCAEAVMTELGLSE 174
+ R G + + P LT E + A LL + K + V+ +GL +
Sbjct: 67 NIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRK--------KRIDEVLDVVGLKD 118
Query: 175 CKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLA 234
+G S G ++R+ I +L NP LL LDEPT+GLD +++ ++L L
Sbjct: 119 -----SAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLR 173
Query: 235 NGGRTIVMTIHQPSNM 250
+ G T++++ H S +
Sbjct: 174 DQGITVLISSHLLSEI 189
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 3e-20
Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 15/184 (8%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNG-----KPFSNQMTR 121
+ G++ VKPGE+ +LGP+G GKTT L L G L G T +G +P + R
Sbjct: 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPA--EARR 78
Query: 122 NTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIG 181
GFV+ L LT E + + A L ++ E + LG+ E + +G
Sbjct: 79 RLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARL---EELADRLGMEELLDRRVG 135
Query: 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIV 241
G S G R++V+I + ++ +P +L LDEPT+GLD + + + +L G+ I+
Sbjct: 136 G-----FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCIL 190
Query: 242 MTIH 245
+ H
Sbjct: 191 FSTH 194
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 3e-20
Identities = 70/243 (28%), Positives = 120/243 (49%), Gaps = 27/243 (11%)
Query: 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLT 95
L E + ++KG + ++ ++K I+ ++PGE L ++G SG GK+T
Sbjct: 273 SPLLDVEQLQVAFPIRKGIL--KRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGL 330
Query: 96 ALGGRLGRINGRITYNGKPFSN----QM---TRNTGFVTQE--DVLSPYLTVTETMVFTA 146
AL RL G I ++G+P N Q+ V Q+ L+P L V ++
Sbjct: 331 ALL-RLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNV-LQIIEEG 388
Query: 147 LLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTR-----GVSGGERKRVSIGQE 201
L + + ++ + AVM E+GL P TR SGG+R+R++I +
Sbjct: 389 LRVHQPTLSAAQREQQVIAVMEEVGLD---------PETRHRYPAEFSGGQRQRIAIARA 439
Query: 202 ILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261
+++ PSL+ LDEPTS LD T+ QIL++L L + + I +++ + H+V++L
Sbjct: 440 LILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVL 499
Query: 262 SEG 264
+G
Sbjct: 500 RQG 502
|
Length = 529 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 5e-20
Identities = 74/232 (31%), Positives = 116/232 (50%), Gaps = 28/232 (12%)
Query: 54 FYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG----GRLGRINGRIT 109
FYG+++ L IT GE L +LGPSG GK++LL L R G +N I
Sbjct: 11 FYGAHQ------ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN--IA 62
Query: 110 YNGKPFSNQMT--------RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIK 161
N FS + RN G V Q+ L P+LTV E ++ L ++ + +
Sbjct: 63 GNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVL--GLSKDQALA 120
Query: 162 CAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDST 221
AE ++ L L + PL +SGG+++RV+I + +++ P +L DEPT+ LD
Sbjct: 121 RAEKLLKRLRLKPYADRY---PLH--LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPE 175
Query: 222 IAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273
I QI+SI+ +LA G T V+ H+ + +V+ + G+ + G+AS
Sbjct: 176 ITAQIVSIIKELAETGITQVIVTHE-VEVARKTASRVVYMENGHIVEQGDAS 226
|
Length = 242 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 5e-20
Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 21/196 (10%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN-GRITYNGKPFS 116
K+ L + + GE + +LGPSGCGKTT L + G L GRI G+
Sbjct: 7 TKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAG-LEEPTSGRIYIGGR--- 62
Query: 117 NQMT------RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTEL 170
+T R+ V Q L P++TV + + F L+L + E + V L
Sbjct: 63 -DVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFG--LKL-RKVPKDEIDERVREVAELL 118
Query: 171 GLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSIL 230
+ + + +SGG+R+RV++G+ I+ P + +DEP S LD+ + Q+ + L
Sbjct: 119 QIEHLLDRK-----PKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAEL 173
Query: 231 LKL-ANGGRTIVMTIH 245
+L G T + H
Sbjct: 174 KRLQQRLGTTTIYVTH 189
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 6e-20
Identities = 60/206 (29%), Positives = 99/206 (48%), Gaps = 20/206 (9%)
Query: 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMT------RNTGFVT 127
V GE++A+LGPSG GK+TLL + G +G I NG T R +
Sbjct: 22 VPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGV----DHTASPPAERPVSMLF 77
Query: 128 QEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRG 187
QE+ L +LTV + + L + ++EK+ EA ++GL+ L G
Sbjct: 78 QENNLFAHLTVAQNIGLGLSPGLKLNAEQREKV---EAAAAQVGLAGFLKRLPGE----- 129
Query: 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL-ANGGRTIVMTIHQ 246
+SGG+R+RV++ + ++ +L LDEP S LD + ++L+++ +L T++M H
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHH 189
Query: 247 PSNMLYYMFHKVLLLSEGYPLYSGEA 272
P + +V+ L G G
Sbjct: 190 PEDAARIA-DRVVFLDNGRIAAQGST 214
|
Length = 231 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 9e-20
Identities = 61/198 (30%), Positives = 94/198 (47%), Gaps = 23/198 (11%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTR 121
E+K +LK I +KPGE +A++GP+G GKTTL+ L G+I +G ++R
Sbjct: 14 EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGID-IRDISR 72
Query: 122 NT-----GFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK 176
+ G V Q+ L T+ E + L PN+ E+ EA +
Sbjct: 73 KSLRSMIGVVLQDTFLFSG-TIMENI----RLGRPNATDEEVIEAAKEAGAHDFI----- 122
Query: 177 NSLIGGPLT------RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSIL 230
L G T +S GER+ ++I + +L +P +L LDE TS +D+ + I L
Sbjct: 123 MKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEAL 182
Query: 231 LKLANGGRTIVMTIHQPS 248
KL GRT ++ H+ S
Sbjct: 183 EKLMK-GRTSIIIAHRLS 199
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 9e-20
Identities = 48/162 (29%), Positives = 85/162 (52%), Gaps = 6/162 (3%)
Query: 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ--MTRNTGFVTQEDV 131
+ GE++A+LGPSG GKTTLL + G +G I + G+ ++ RN GFV Q
Sbjct: 25 IPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYA 84
Query: 132 LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191
L ++TV + + F ++ + + +I+ V L L + + +SGG
Sbjct: 85 LFRHMTVFDNVAFGLRVKPRSERPPEAEIR--AKVHELLKLVQLDW--LADRYPAQLSGG 140
Query: 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL 233
+R+RV++ + + + P +L LDEP LD+ + +++ L +L
Sbjct: 141 QRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRL 182
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 9e-20
Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 21/181 (11%)
Query: 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQE---- 129
GE+L +LGP+G GKTTLL A+ G + G + G + R+ G+V Q
Sbjct: 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGAS-PGKGWRHIGYVPQRHEFA 61
Query: 130 -----DVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPL 184
V ++ + L+ P + +GL+E + +G
Sbjct: 62 WDFPISVAHTVMSGRTGHI--GWLRRPC----VADFAAVRDALRRVGLTELADRPVGE-- 113
Query: 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTI 244
+SGG+R+RV + + + PS+L LDEP +GLD + + + ++LA G I+MT
Sbjct: 114 ---LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTT 170
Query: 245 H 245
H
Sbjct: 171 H 171
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 87.5 bits (218), Expect = 1e-19
Identities = 49/205 (23%), Positives = 95/205 (46%), Gaps = 45/205 (21%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFV 126
L ++ V+PGE+ ++GP+G GKTTL + G L +G + ++G+ +
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGED-----------I 64
Query: 127 TQEDVLSPY-------------------LTVTETMVFTALLQLPNSF-------TEKEKI 160
T L P+ LTV E ++ A + + E+E
Sbjct: 65 TG---LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREAR 121
Query: 161 KCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDS 220
+ AE ++ +GL++ + G +S G+++R+ I + + +P LL LDEP +GL+
Sbjct: 122 ERAEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNP 176
Query: 221 TIAQQILSILLKLANGGRTIVMTIH 245
+++ ++ +L G T+++ H
Sbjct: 177 EETEELAELIRELRERGITVLLVEH 201
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 1e-19
Identities = 70/215 (32%), Positives = 107/215 (49%), Gaps = 22/215 (10%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN------QMT 120
LKGI + GEM+A+LGP+G GK+TL G L +G + G+P ++
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVR 77
Query: 121 RNTGFVTQ---EDVLSPYLTVTETMVFTAL-LQLPNSFTEKEKIKCAEAVMTELGLSECK 176
+ G V Q + + +P TV E + F L L L EK + +AV G+ +
Sbjct: 78 KTVGIVFQNPDDQLFAP--TVEEDVAFGPLNLGLSKEEVEKRVKEALKAV----GMEGFE 131
Query: 177 NSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG 236
N +SGG++KRV+I + + P ++ LDEPTSGLD A QI+ +L L
Sbjct: 132 NKP-----PHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE 186
Query: 237 GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271
G TI+++ H + Y KV ++S+G + G
Sbjct: 187 GITIIISTHDVDLVPVYA-DKVYVMSDGKIIKEGT 220
|
Length = 275 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 1e-19
Identities = 52/194 (26%), Positives = 103/194 (53%), Gaps = 12/194 (6%)
Query: 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF--SNQMTRNTGFVTQEDV 131
V GE++A++GPSG GK+TLL + G + +G I N + R + QE+
Sbjct: 21 VADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENN 80
Query: 132 LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191
L +LTV + + L + ++EK+ ++G+++ + L +SGG
Sbjct: 81 LFAHLTVRQNIGLGLHPGLKLNAEQQEKV---VDAAQQVGIADYLDRLPE-----QLSGG 132
Query: 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNM 250
+R+RV++ + ++ +L LDEP S LD + +++L+++ +L + RT++M H S+
Sbjct: 133 QRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSD- 191
Query: 251 LYYMFHKVLLLSEG 264
+ ++ ++S+G
Sbjct: 192 ARAIASQIAVVSQG 205
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 1e-19
Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 11/175 (6%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN---QM 119
+ L ++ V+PG +A+LGP+G GK+TL + L G+I+ G
Sbjct: 13 ARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 120 TRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSL 179
G V Q+ L L+V + + + A L + + +I ++ LGL+E +
Sbjct: 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARI---AELLARLGLAERADDK 129
Query: 180 IGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLA 234
+ R ++GG R+RV I + +L P+LL LDEPT GLD I + + LA
Sbjct: 130 V-----RELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALA 179
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 2e-19
Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 62/226 (27%)
Query: 54 FYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG------RINGR 107
+YG +K LK I + ++ A++GPSGCGK+TLL L R+ R+ G
Sbjct: 16 YYG------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCL-NRMNDLIPGARVEGE 68
Query: 108 ITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTET-----MVFTALLQLPNSFT------- 155
+ +GK ++ P + V E MVF Q PN F
Sbjct: 69 VLLDGK----------------NIYDPKVDVVELRRRVGMVF----QKPNPFPMSIYDNV 108
Query: 156 ----------EKEKIKCAEAVMTELGL-SECKNSLIGGPLTRGVSGGERKRVSIGQEILI 204
+KE + E+ + + L E K+ L L G+SGG+++R+ I + + +
Sbjct: 109 AYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSAL--GLSGGQQQRLCIARALAV 166
Query: 205 NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNM 250
P +L +DEPTS LD +I ++ +L TIV+ H NM
Sbjct: 167 KPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTH---NM 208
|
Length = 253 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 2e-19
Identities = 53/204 (25%), Positives = 95/204 (46%), Gaps = 40/204 (19%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--------- 117
+ ++ V+PGE++ ++GP+G GKTTL + G +G + + G+ +
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARL 79
Query: 118 ------QMTRNTGFVTQEDVLSPYLTVTETM--------VFTALLQLPNSFT-EKEKIKC 162
Q+TR L P LTV E + + LL P + E+E +
Sbjct: 80 GIARTFQITR----------LFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARER 129
Query: 163 AEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTI 222
A ++ +GL E + G +S G+++R+ I + + P LL LDEP +GL+
Sbjct: 130 ARELLEFVGLGELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEE 184
Query: 223 AQQILSILLKL-ANGGRTIVMTIH 245
+++ ++ +L GG TI++ H
Sbjct: 185 TEELAELIRELRDRGGVTILLIEH 208
|
Length = 250 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 3e-19
Identities = 68/236 (28%), Positives = 104/236 (44%), Gaps = 63/236 (26%)
Query: 45 VYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-- 102
+I+ FYG EK LK I + ++ A++GPSGCGK+TLL +L R+
Sbjct: 1 AIEIENLNLFYG------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLN-RMNDL 53
Query: 103 ----RINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTET-----MVFTALLQLPNS 153
RI G++ ++G+ D+ + V E MVF Q PN
Sbjct: 54 VPGVRIEGKVLFDGQ----------------DIYDKKIDVVELRRRVGMVF----QKPNP 93
Query: 154 F------------------TEKEKIKCAEAVMTELGL-SECKNSLIGGPLTRGVSGGERK 194
F +KE + E + + L E K+ L L G+SGG+++
Sbjct: 94 FPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSAL--GLSGGQQQ 151
Query: 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNM 250
R+ I + + + P +L LDEPTS LD +I ++ +L TIV+ H NM
Sbjct: 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELK-KKYTIVIVTH---NM 203
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 3e-19
Identities = 59/200 (29%), Positives = 99/200 (49%), Gaps = 15/200 (7%)
Query: 54 FYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLL-------TALGGRLGRING 106
F +K +L I + GE++ ++GPSG GK+TLL G L ++G
Sbjct: 4 FKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL-IVDG 62
Query: 107 RITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAV 166
+ K + + G V Q+ L P+LT E ++F L S E EK A +
Sbjct: 63 LKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQ--AREL 120
Query: 167 MTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQI 226
+ ++GL+E + +SGG+++RV+I + + + P L+ DEPTS LD + ++
Sbjct: 121 LAKVGLAERAHHYPSE-----LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEV 175
Query: 227 LSILLKLANGGRTIVMTIHQ 246
L ++ LA G T+V+ H+
Sbjct: 176 LKVMQDLAEEGMTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 3e-19
Identities = 32/76 (42%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 189 SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPS 248
SGG+R+RV++ + +L+NP LL LDEPTSGLD +++L +L +LA GRT+++ H P
Sbjct: 82 SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE 141
Query: 249 NMLYYMFHKVLLLSEG 264
+V++L +G
Sbjct: 142 LAELA-ADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 4e-19
Identities = 63/235 (26%), Positives = 105/235 (44%), Gaps = 38/235 (16%)
Query: 59 KKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS-- 116
+ E L ++G V+ GE+L ++GP+G GK+TLL + G + +G I + G+P
Sbjct: 7 NDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGSGSIQFAGQPLEAW 65
Query: 117 --NQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE 174
++ R+ +++Q+ T +P + + + L++
Sbjct: 66 SATELARHRAYLSQQQ--------------TPPFAMP-VWHYLTLHQPDKTRTEL--LND 108
Query: 175 CKNSL-IGGPLTRGV---SGGERKRVSIGQEIL-----INPS--LLFLDEPTSGLDSTIA 223
+L + L R SGGE +RV + +L NP+ LL LDEP + LD +A
Sbjct: 109 VAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLD--VA 166
Query: 224 QQIL--SILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAM 276
QQ +L L G IVM+ H ++ L + H+ LL G L SG +
Sbjct: 167 QQSALDRLLSALCQQGLAIVMSSHDLNHTLRHA-HRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 4e-19
Identities = 54/188 (28%), Positives = 82/188 (43%), Gaps = 36/188 (19%)
Query: 60 KIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR--INGRITYNGKPFSN 117
+ K ILKG+ +K GE+ A++GP+G GK+TL + G G I + G
Sbjct: 9 SVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG----- 63
Query: 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKN 177
ED+ L E A L + +F +I KN
Sbjct: 64 -----------EDITD--LPPEER----ARLGIFLAFQYPPEI------------PGVKN 94
Query: 178 SLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGG 237
+ + G SGGE+KR I Q +L+ P L LDEP SGLD + + ++ KL G
Sbjct: 95 ADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEG 154
Query: 238 RTIVMTIH 245
+++++ H
Sbjct: 155 KSVLIITH 162
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 8e-19
Identities = 58/196 (29%), Positives = 92/196 (46%), Gaps = 13/196 (6%)
Query: 54 FYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGK 113
F K+ +K ++ G++ V+ GE +LGP+G GKTT L L G G I+ G+
Sbjct: 10 FRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGE 69
Query: 114 PF---SNQMTRNTGFVTQEDVLSPYLTVTETM-VFTALLQLPNSFTEKEKIKCAEAVMTE 169
P + + G V Q D L P TV E + VF L + V
Sbjct: 70 PVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAA-------AARALVPPL 122
Query: 170 LGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSI 229
L ++ +N +SGG ++R+++ + ++ +P +L LDEPT+GLD +
Sbjct: 123 LEFAKLENK--ADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWER 180
Query: 230 LLKLANGGRTIVMTIH 245
L L G+TI++T H
Sbjct: 181 LRSLLARGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.7 bits (221), Expect = 9e-19
Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 11/185 (5%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNT--- 123
L G++ V+PGE+ A+LG +G GK+TL+ L G +G I +GKP + R+
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83
Query: 124 --GFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEK-IKCAEAVMTELGLSECKNSLI 180
V QE L P L+V E + +++ + A ++ LGL ++L+
Sbjct: 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLV 143
Query: 181 GGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTI 240
G +S +R+ V I + + + +L LDEPT+ L +++ ++ +L G I
Sbjct: 144 GD-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAI 198
Query: 241 VMTIH 245
+ H
Sbjct: 199 IYISH 203
|
Length = 500 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 1e-18
Identities = 65/219 (29%), Positives = 100/219 (45%), Gaps = 10/219 (4%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR--INGRITYNGKPFSN-- 117
+K ILKG+ VK GE+ A++GP+G GK+TL + G G I ++G+
Sbjct: 15 GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELS 74
Query: 118 --QMTRNTGFVT-QEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE 174
+ R F+ Q V P +T ++ + + E IK + LGL E
Sbjct: 75 PDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDE 134
Query: 175 CKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLA 234
+ + G SGGE+KR I Q +L+ P L LDEP SGLD + + + L
Sbjct: 135 ---EFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR 191
Query: 235 NGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273
GR +++ H + Y KV +L +G + SG+
Sbjct: 192 EEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDPE 230
|
Length = 251 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.4 bits (211), Expect = 1e-18
Identities = 64/210 (30%), Positives = 104/210 (49%), Gaps = 26/210 (12%)
Query: 54 FYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL------GRINGR 107
+YG +K +K + V+ G + A++GPSGCGKTT L A+ R+ R+ GR
Sbjct: 13 YYG------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAIN-RMHDLTPGARVTGR 65
Query: 108 ITYNGKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIK 161
I +G+ M R G V Q+ P ++V + +V A L+L ++
Sbjct: 66 ILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLME 123
Query: 162 CAEAVMTELGL-SECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDS 220
AE + L E K+ L P T G+SGG+++R+ I + + + P +L +DEPTS LD
Sbjct: 124 VAERSLRGAALWDEVKDRL-KTPAT-GLSGGQQQRLCIARALAVEPEILLMDEPTSALDP 181
Query: 221 TIAQQILSILLKLANGGRTIVMT--IHQPS 248
+I ++ L I++T +HQ +
Sbjct: 182 ASTARIEDLMTDLKKVTTIIIVTHNMHQAA 211
|
Length = 252 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 1e-18
Identities = 52/194 (26%), Positives = 98/194 (50%), Gaps = 13/194 (6%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNG----- 112
K +++ ++ ++ V GE++ +LGP+G GKTT + G + +G+I +
Sbjct: 11 AKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITK 70
Query: 113 KPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKC-AEAVMTELG 171
P + G++ QE + LTV + ++ A+L++ +K + K +A++ E
Sbjct: 71 LPMHKRARLGIGYLPQEASIFRKLTVEDNIM--AVLEIREKDLKKAERKEELDALLEEFH 128
Query: 172 LSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL 231
++ ++S L SGGER+RV I + + NP + LDEP +G+D I I+
Sbjct: 129 ITHLRDSK-AYSL----SGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIK 183
Query: 232 KLANGGRTIVMTIH 245
L + G +++T H
Sbjct: 184 HLKDRGIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 1e-18
Identities = 59/200 (29%), Positives = 98/200 (49%), Gaps = 12/200 (6%)
Query: 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGK--PFSNQMTRNTGFVTQEDV 131
GE+ A++GPSG GK+TLL + G +GR+ NG + R + QE+
Sbjct: 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENN 80
Query: 132 LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191
L +LTV + + L P E + E + +GL+ + L G +SGG
Sbjct: 81 LFAHLTVEQNV---GLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGE-----LSGG 132
Query: 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL-ANGGRTIVMTIHQPSNM 250
ER+RV++ + ++ + +L LDEP + LD + ++L ++L L A T++M HQP +
Sbjct: 133 ERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDA 192
Query: 251 LYYMFHKVLLLSEGYPLYSG 270
+ +V+ L G G
Sbjct: 193 K-RLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 1e-18
Identities = 64/238 (26%), Positives = 114/238 (47%), Gaps = 45/238 (18%)
Query: 59 KKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN-------GRITYN 111
K+ E +LKG++ G++++++G SG GK+T L IN G I N
Sbjct: 14 KRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRC-------INFLEKPSAGSIRVN 66
Query: 112 G-------------KPF-SNQMTR---NTGFVTQEDVLSPYLTVTETMVFTALLQLPNSF 154
G KP Q+ R G V Q L ++TV E ++ + L
Sbjct: 67 GEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GV 124
Query: 155 TEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEP 214
++ E I+ AE + ++G++E ++ +SGG+++RV+I + + + P ++ DEP
Sbjct: 125 SKAEAIERAEKYLAKVGIAEKADAYPAH-----LSGGQQQRVAIARALAMEPEVMLFDEP 179
Query: 215 TSGLDSTIAQQILSILLKLANGGRTIVMTIH------QPSNMLYYMFHKVLLLSEGYP 266
TS LD + ++L ++ LA GRT+V+ H S+ + ++ H+ + EG P
Sbjct: 180 TSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFL-HQGKIEEEGPP 236
|
Length = 256 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 2e-18
Identities = 51/204 (25%), Positives = 94/204 (46%), Gaps = 16/204 (7%)
Query: 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----QMTR 121
IL I+ V+ GE +A+ GPSGCGK+TLL + + +G + + G+ S +
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQ 77
Query: 122 NTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIG 181
+ Q L TV + ++F ++ + A ++ L + S++
Sbjct: 78 QVSYCAQTPALFGD-TVEDNLIFPWQIR-----NRRPDRAAALDLLARFALPD---SILT 128
Query: 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIV 241
+T +SGGE++R+++ + + P +L LDE TS LD + + I ++ + V
Sbjct: 129 KNIT-ELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAV 187
Query: 242 MTI-HQPSNMLYYMFHKVLLLSEG 264
+ I H + + KV+ L G
Sbjct: 188 LWITHDKDQAIRH-ADKVITLQPG 210
|
Length = 223 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 3e-18
Identities = 56/189 (29%), Positives = 91/189 (48%), Gaps = 20/189 (10%)
Query: 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMT----- 120
+L ++ + GEM+A++G SG GK+TLL LGG +G + +NG+P ++++
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPM-SKLSSAAKA 82
Query: 121 ----RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK 176
+ GF+ Q L P T E + L+ + A ++ +GL
Sbjct: 83 ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSR---ALEMLAAVGLEHRA 139
Query: 177 NSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSIL--LKLA 234
N +SGGER+RV+I + ++ NP L+ DEPT LD+ A I +L L
Sbjct: 140 NH-----RPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL 194
Query: 235 NGGRTIVMT 243
G +V+T
Sbjct: 195 QGTAFLVVT 203
|
Length = 233 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 4e-18
Identities = 62/194 (31%), Positives = 101/194 (52%), Gaps = 22/194 (11%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN---- 117
+ + +LKG++ +K GE +A+LG +GCGK+TLL L G I NG+P ++
Sbjct: 351 QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEA 410
Query: 118 QMTRNTGFVTQE-DVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK 176
+ + V+Q + S T+ + + LL PN+ E V+ ++GL +
Sbjct: 411 ALRQAISVVSQRVHLFSA--TLRDNL----LLAAPNASDEA-----LIEVLQQVGLEKLL 459
Query: 177 NSLIG-----GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL 231
G G R +SGGE++R+ I + +L + LL LDEPT GLD+ +QIL +L
Sbjct: 460 EDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLA 519
Query: 232 KLANGGRTIVMTIH 245
+ A +T++M H
Sbjct: 520 EHA-QNKTVLMITH 532
|
Length = 574 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 4e-18
Identities = 56/198 (28%), Positives = 97/198 (48%), Gaps = 23/198 (11%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMT- 120
+E L ++ ++PGE +A++G G GK+TLL L G G + +G Q+
Sbjct: 476 QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVD-IRQIDP 534
Query: 121 ----RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK 176
RN G+V Q+ L Y T+ + + A ++E ++ AE G++E
Sbjct: 535 ADLRRNIGYVPQDPRLF-YGTLRDNIALGAPY-----ADDEEILRAAELA----GVTEFV 584
Query: 177 NSLIGG---PLT---RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSIL 230
G + R +SGG+R+ V++ + +L +P +L LDEPTS +D+ ++
Sbjct: 585 RRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDR- 643
Query: 231 LKLANGGRTIVMTIHQPS 248
LK G+T+V+ H+ S
Sbjct: 644 LKRWLAGKTLVLVTHRTS 661
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 6e-18
Identities = 76/241 (31%), Positives = 119/241 (49%), Gaps = 28/241 (11%)
Query: 45 VYKIKMKK-GFYGSNKKI-----EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG 98
Y++ K+ G GS K + E LKGI+ ++ GE++ +GP+G GKTT L L
Sbjct: 9 SYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILS 68
Query: 99 GRLGRINGRITYNGK-PFS--NQMTRNTGFVT-QEDVLSPYLTVTETMVF-TALLQLPNS 153
G L +G + G P+ + R G V Q+ L L V ++ A+ LP +
Sbjct: 69 GLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPA 128
Query: 154 FTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDE 213
+K + +E + +L L+ P+ R +S G+R R I +L P +LFLDE
Sbjct: 129 RFKKRLDELSE--LLDLE------ELLDTPV-RQLSLGQRMRAEIAAALLHEPEILFLDE 179
Query: 214 PTSGLDSTIAQQILSILLKLANGGR--TIVMTIHQPSNM--LYYMFHKVLLLSEGYPLYS 269
PT GLD +AQ+ + LK N R T+++T H M + + +VL++ +G LY
Sbjct: 180 PTIGLD-VVAQENIRNFLKEYNRERGTTVLLTSH---YMKDIEALARRVLVIDKGRLLYD 235
Query: 270 G 270
G
Sbjct: 236 G 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 6e-18
Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 49/211 (23%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMT- 120
+E L ++ ++ GE +A++G G GK+TLL L G +G + +G Q+
Sbjct: 15 QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIR-QLDP 73
Query: 121 ----RNTGFVTQEDVL------------SPYLT---VTETMVFTALLQL----PNSFTEK 157
RN G+V Q+ L +P + + PN
Sbjct: 74 ADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGL--- 130
Query: 158 EKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSG 217
+L + E G RG+SGG+R+ V++ + +L +P +L LDEPTS
Sbjct: 131 -----------DLQIGE------RG---RGLSGGQRQAVALARALLNDPPILLLDEPTSA 170
Query: 218 LDSTIAQQILSILLKLANGGRTIVMTIHQPS 248
+D +++ L +L G +T+++ H+PS
Sbjct: 171 MDMNSEERLKERLRQLL-GDKTLIIITHRPS 200
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 7e-18
Identities = 58/184 (31%), Positives = 88/184 (47%), Gaps = 20/184 (10%)
Query: 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMT----- 120
IL+G++ V GE+ +LG +G GKTTLL L G L +G I +G+ +
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74
Query: 121 RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTEL--GLSECKNS 178
+V Q + P LTV E + L L KI + EL L E
Sbjct: 75 AGIAYVPQGREIFPRLTVEENL----LTGLAALPRRSRKIP---DEIYELFPVLKEMLGR 127
Query: 179 LIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GG 237
GG L SGG++++++I + ++ P LL LDEPT G+ +I + I ++ +L GG
Sbjct: 128 R-GGDL----SGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGG 182
Query: 238 RTIV 241
I+
Sbjct: 183 MAIL 186
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 9e-18
Identities = 63/209 (30%), Positives = 96/209 (45%), Gaps = 33/209 (15%)
Query: 55 YGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN-------GR 107
+G A L ++ + GE+ ++G SG GK+TLL RL IN G
Sbjct: 11 FGQTGTGTVTA-LDDVSLEIPKGEIFGIIGYSGAGKSTLL-----RL--INLLERPTSGS 62
Query: 108 ITYNGKPFSN-------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKI 160
+ +G+ + Q+ + G + Q L TV E + F L+L K +I
Sbjct: 63 VFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFP--LELAG--VPKAEI 118
Query: 161 KCAEAVMTEL-GLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLD 219
K A + EL GLS+ + P +SGG+++RV+I + + NP +L DE TS LD
Sbjct: 119 KQRVAELLELVGLSDKADRY---PAQ--LSGGQKQRVAIARALANNPKILLCDEATSALD 173
Query: 220 STIAQQILSILLKL-ANGGRTIVMTIHQP 247
Q IL +L + G TIV+ H+
Sbjct: 174 PETTQSILELLKDINRELGLTIVLITHEM 202
|
Length = 339 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 1e-17
Identities = 64/235 (27%), Positives = 103/235 (43%), Gaps = 27/235 (11%)
Query: 76 PG-EMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNG--------KPFSNQMTRNTGFV 126
PG + A+ G SG GKTTL+ + G G I NG F R G+V
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80
Query: 127 TQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTE-LGLSECKNSLIGGPLT 185
QE L P+L+V + + + + + + E LG+ L+G
Sbjct: 81 FQEARLFPHLSVRGNLRYGM------KRARPSERRISFERVIELLGIGH----LLGRL-P 129
Query: 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL-ANGGRTIVMTI 244
+SGGE++RV+IG+ +L +P LL +DEP + LD +IL L +L A G I+
Sbjct: 130 GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVS 189
Query: 245 HQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNYFASIGYCPSVPTNPSDFLLDL 299
H +L + +V++L +G A+G + + P + L++
Sbjct: 190 HSLQEVL-RLADRVVVLEDG----RVAAAGPIAEVWASPDLPWLAREDQGSLIEG 239
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 2e-17
Identities = 66/242 (27%), Positives = 108/242 (44%), Gaps = 27/242 (11%)
Query: 60 KIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-RI-NGRITYNGKPFS- 116
+E+K ILKG+ VK GE+ A++GP+G GK+TL + G + +G I + G+
Sbjct: 9 SVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLE 68
Query: 117 ---NQMTRNTGFVT-QEDVLSPYLTVTETMVFTALLQLPNSFTEKEK---------IKCA 163
++ R F+ Q P ++ E + +AL N+ +K
Sbjct: 69 LEPDERARAGLFLAFQYPEEIPGVSNLE-FLRSAL----NARRSARGEEPLDLLDFLKLL 123
Query: 164 EAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIA 223
+A + LG+ E + + G SGGE+KR I Q L+ P L LDE SGLD
Sbjct: 124 KAKLALLGMDE---EFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDAL 180
Query: 224 QQILSILLKLANGGRTIVMTIHQPSNMLYYMF-HKVLLLSEGYPLYSGEASGAMNYFASI 282
+ + + +L R+ ++ H +L Y+ V +L +G + SG+
Sbjct: 181 KIVAEGINRLREPDRSFLIITHYQ-RLLNYIKPDYVHVLLDGRIVKSGDVE-LAKELEEK 238
Query: 283 GY 284
GY
Sbjct: 239 GY 240
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 2e-17
Identities = 59/213 (27%), Positives = 104/213 (48%), Gaps = 23/213 (10%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP----FSN 117
+K +LK I+ ++PGE +A++GPSG GK+TL+ L +G I +G +
Sbjct: 340 GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLD 399
Query: 118 QMTRNTGFVTQEDVLSPYL---TVTETMVFTALLQLPNSFTEKEKIKCAEAVMTE---LG 171
+ + G V+Q+ P L T+ E + T++E + +
Sbjct: 400 SLRKRIGIVSQD----PLLFSGTIRENIALGR-----PDATDEEIEEALKLANAHEFIAN 450
Query: 172 LSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL 231
L + ++++G +SGG+R+R++I + +L NP +L LDE TS LD+ I L
Sbjct: 451 LPDGYDTIVG-ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALK 509
Query: 232 KLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
KL GRT ++ H+ S + ++++L G
Sbjct: 510 KLLK-GRTTLIIAHRLSTIK--NADRIIVLDNG 539
|
Length = 567 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 3e-17
Identities = 63/197 (31%), Positives = 101/197 (51%), Gaps = 25/197 (12%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN------GRITYNGK--- 113
+K L ++ P E+ A++GPSG GK+TLL ++ R+ +N G I YNG
Sbjct: 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSIN-RMNDLNPEVTITGSIVYNGHNIY 75
Query: 114 -PFSN--QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTEL 170
P ++ + + G V Q+ P +++ E +V+ L+ K+K EAV L
Sbjct: 76 SPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLK-----GIKDKQVLDEAVEKSL 129
Query: 171 -GLS---ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQI 226
G S E K+ L L G+SGG+++RV I + + +P ++ LDEPTS LD A +I
Sbjct: 130 KGASIWDEVKDRLHDSAL--GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKI 187
Query: 227 LSILLKLANGGRTIVMT 243
LL L + +++T
Sbjct: 188 EETLLGLKDDYTMLLVT 204
|
Length = 252 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 4e-17
Identities = 61/220 (27%), Positives = 107/220 (48%), Gaps = 15/220 (6%)
Query: 59 KKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ 118
K+ ++ + I+ V + +LGP+G GK+TLL + G L +G I ++G P++ +
Sbjct: 8 KRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK 67
Query: 119 MTRNTGFVTQEDVLSPYLTVTETM-VFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKN 177
G + + L LT E + V T LL LP+S +I + V+ + L+
Sbjct: 68 DLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDS-----RI---DEVLNIVDLTNTGK 119
Query: 178 SLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGG 237
S G ++R+ I +L +P LL LDEPT+GLD Q++ ++ G
Sbjct: 120 KKAK-----QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQG 174
Query: 238 RTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMN 277
T++++ H S + H + ++SEG Y G+ + + N
Sbjct: 175 ITVILSSHILSEVQQLADH-IGIISEGVLGYQGKINKSEN 213
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 4e-17
Identities = 58/189 (30%), Positives = 95/189 (50%), Gaps = 18/189 (9%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS----N 117
+ +L+ I+ + GE +A++GPSG GK+TL+ + +GRI +G
Sbjct: 13 DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLA 72
Query: 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAV-MTEL--GLSE 174
+ R G V+Q+ L TV E + + P + T +E + A A E L E
Sbjct: 73 SLRRQIGLVSQDVFLF-NDTVAENIAYGR----PGA-TREEVEEAARAANAHEFIMELPE 126
Query: 175 CKNSLIGGPLTRGV--SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLK 232
+++IG RGV SGG+R+R++I + +L +P +L LDE TS LD+ + + + L +
Sbjct: 127 GYDTVIG---ERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALER 183
Query: 233 LANGGRTIV 241
L T V
Sbjct: 184 LMKNRTTFV 192
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 4e-17
Identities = 56/206 (27%), Positives = 93/206 (45%), Gaps = 24/206 (11%)
Query: 81 AMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMT--------RNTGFVTQEDVL 132
A+ GPSG GKT+L+ + G GRI NG+ + R G+V Q+ L
Sbjct: 28 ALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARL 87
Query: 133 SPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192
P+ TV + + + + + + ++ LG+ + P T +SGGE
Sbjct: 88 FPHYTVRGNLRYGM------WKSMRAQF---DQLVALLGIEHLLDRY---PGT--LSGGE 133
Query: 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRT-IVMTIHQPSNML 251
++RV+IG+ +L P LL +DEP + LD ++IL L +L + I+ H +L
Sbjct: 134 KQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVL 193
Query: 252 YYMFHKVLLLSEGYPLYSGEASGAMN 277
+ +V++L G SG
Sbjct: 194 -RLADRVVVLENGKVKASGPLEEVWG 218
|
Length = 352 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.5 bits (198), Expect = 5e-17
Identities = 55/197 (27%), Positives = 105/197 (53%), Gaps = 14/197 (7%)
Query: 61 IEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG------RINGRITYNGKP 114
I +KAILK IT + + ++GPSG GK+TLL L + +++G++ Y GK
Sbjct: 20 INDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKD 79
Query: 115 F----SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTEL 170
+ ++ + G V Q+ P+L++ + + + L+ ++E K E + ++
Sbjct: 80 IFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVEECLRKV 137
Query: 171 GLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSIL 230
GL + + P ++ +SGG+++R++I + + + P +L +DEPTS +D +Q I ++
Sbjct: 138 GLWKEVYDRLNSPASQ-LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLI 196
Query: 231 LKLANGGRTIVMTIHQP 247
+L N IV+ H P
Sbjct: 197 TELKN-EIAIVIVSHNP 212
|
Length = 257 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 7e-17
Identities = 55/230 (23%), Positives = 100/230 (43%), Gaps = 52/230 (22%)
Query: 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG 98
L+ +++ + KGF K + G++ +K GE L ++G SGCGK+TL +
Sbjct: 5 LEVKNLKKYFPVGKGF----GKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLIL 60
Query: 99 GRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKE 158
G +G I + GK + +++E
Sbjct: 61 GLEEPTSGEILFEGKDITK------------------------------------LSKEE 84
Query: 159 KIKCAEAVMTELGLSECKNSLIGGPLTRG---VSGGERKRVSIGQEILINPSLLFLDEPT 215
+ + ++ ++GL E L R +SGG+R+R+ I + + +NP L+ DEP
Sbjct: 85 RRERVLELLEKVGLPE---EF----LYRYPHELSGGQRQRIGIARALALNPKLIVADEPV 137
Query: 216 SGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
S LD ++ QIL++L L G T + H S ++ Y+ ++ ++ G
Sbjct: 138 SALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMYLG 186
|
Length = 268 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.0 bits (197), Expect = 7e-17
Identities = 64/208 (30%), Positives = 102/208 (49%), Gaps = 32/208 (15%)
Query: 54 FYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG------RINGR 107
FYG + LKGI E+ A++GPSGCGK+T L L R+ I G
Sbjct: 14 FYGKFEA------LKGIDLDFNQNEITALIGPSGCGKSTYLRTLN-RMNDLIPGVTITGN 66
Query: 108 ITYNGKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIK 161
++ G+ Q+ + G V Q+ P+ ++ E +++ L K+K
Sbjct: 67 VSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPF-SIYENVIYGLRLA-----GVKDKAV 120
Query: 162 CAEAVMTELGLS----ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSG 217
EAV T L + E K+ L L+ +SGG+++RV I + + + P ++ LDEPTS
Sbjct: 121 LDEAVETSLKQAAIWDEVKDHLHESALS--LSGGQQQRVCIARVLAVKPDVILLDEPTSA 178
Query: 218 LDSTIAQQILSILLKLANGGRTIVMTIH 245
LD + QI ++LL+L + TI++ H
Sbjct: 179 LDPISSTQIENMLLELRD-QYTIILVTH 205
|
Length = 252 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.1 bits (197), Expect = 7e-17
Identities = 65/240 (27%), Positives = 112/240 (46%), Gaps = 42/240 (17%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGG------------------ 99
K + L + + GEM+A+LGPSG GK+TLL L G
Sbjct: 11 AKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70
Query: 100 --RLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP------ 151
R GR+ I + NTG++ Q+ L L+V E ++ AL P
Sbjct: 71 VQREGRLARDI--------RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCF 122
Query: 152 NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFL 211
+ FT ++K + +A +T +G+ + + +SGG+++RV+I + ++ ++
Sbjct: 123 SWFTREQKQRALQA-LTRVGMVHFAHQRVS-----TLSGGQQQRVAIARALMQQAKVILA 176
Query: 212 DEPTSGLDSTIAQQILSILLKL-ANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270
DEP + LD A+ ++ L + N G T+V+T+HQ L Y +++ L +G+ Y G
Sbjct: 177 DEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYC-ERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 7e-17
Identities = 64/213 (30%), Positives = 104/213 (48%), Gaps = 23/213 (10%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGK----PFSNQMTRN 122
LKG+ ++ GE ++++G SGCGK+TLL + G +G + GK P ++M
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMV-- 58
Query: 123 TGFVTQEDVLSPYLTVTETM---VFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSL 179
V Q L P+LTV E + V L L S E+ I E + +GL+E +
Sbjct: 59 ---VFQNYSLLPWLTVRENIALAVDRVLPDLSKS--ERRAI--VEEHIALVGLTEAADKR 111
Query: 180 IGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGR- 238
G +SGG ++RV+I + + I P +L LDEP LD+ + L+++ R
Sbjct: 112 PG-----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRV 166
Query: 239 TIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271
T++M H L + +V++L+ G G+
Sbjct: 167 TVLMVTHDVDEAL-LLSDRVVMLTNGPAANIGQ 198
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 1e-16
Identities = 63/227 (27%), Positives = 97/227 (42%), Gaps = 63/227 (27%)
Query: 54 FYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG------RINGR 107
FYG + LK I ++ ++ A++GPSGCGK+T L L R+ +I G
Sbjct: 12 FYGDFQA------LKKINLDIEENQVTALIGPSGCGKSTFLRTLN-RMNDLIPSVKIEGE 64
Query: 108 ITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTET-----MVFTALLQLPNSFTE------ 156
+ +G +D+ + V + MVF Q PN F
Sbjct: 65 VLLDG----------------QDIYKSDIDVNQLRKRVGMVF----QQPNPFPMSIYDNV 104
Query: 157 ---------KEKIKCAEAVMTELGLS----ECKNSLIGGPLTRGVSGGERKRVSIGQEIL 203
K+K K E V L + E K+ L L G+SGG+++R+ I + +
Sbjct: 105 AYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSAL--GLSGGQQQRLCIARALA 162
Query: 204 INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNM 250
+ P +L +DEPTS LD +I ++ +L TIV+ H NM
Sbjct: 163 VEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTH---NM 205
|
Length = 250 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 2e-16
Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 15/188 (7%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQM--- 119
E+ + +G++ + GE L + GP+G GKTTLL L G L +G + +NG + Q
Sbjct: 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEP 71
Query: 120 TRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSL 179
RN ++ L P L+ E L + + +A + +GL+ ++
Sbjct: 72 HRNILYLGHLPGLKPELSALEN------LHFWAAIHGGAQRTIEDA-LAAVGLTGFEDLP 124
Query: 180 IGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRT 239
+S G+++R+++ + L L LDEPT+ LD + +L G
Sbjct: 125 A-----AQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGI 179
Query: 240 IVMTIHQP 247
+++T HQ
Sbjct: 180 VLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 2e-16
Identities = 51/200 (25%), Positives = 95/200 (47%), Gaps = 22/200 (11%)
Query: 54 FYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGK 113
YG KK + + + GE L ++GPSG GKTT + + + +G I +G+
Sbjct: 9 RYGGGKKA-----VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGE 63
Query: 114 PFSNQ----MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTE 169
Q + R G+V Q+ L P++TV E + + +L + +++ + A+ ++
Sbjct: 64 DIREQDPVELRRKIGYVIQQIGLFPHMTVEENIA--LVPKL-LKWPKEKIRERADELLAL 120
Query: 170 LGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLD----STIAQQ 225
+GL + +SGG+++RV + + + +P LL +DEP LD + ++
Sbjct: 121 VGLDPAE---FADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEE 177
Query: 226 ILSILLKLANGGRTIVMTIH 245
+ +L G+TIV H
Sbjct: 178 FKRLQQEL---GKTIVFVTH 194
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 77.1 bits (191), Expect = 3e-16
Identities = 58/229 (25%), Positives = 109/229 (47%), Gaps = 47/229 (20%)
Query: 48 IKMKKG-FYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRING 106
I ++ F + + E LK I V GE++A++GP G GK++LL+AL G L +++G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 107 RITYNGKPFSNQMTRNTGFVTQEDVLSPYL---TVTETMVFTALLQLPNSFTE---KEKI 160
++ G +V+QE P++ T+ E ++F F E ++ I
Sbjct: 61 SVSVPGS---------IAYVSQE----PWIQNGTIRENILFGK------PFDEERYEKVI 101
Query: 161 K-CAEAVMTELGLSECKNSLIGGPLT----RGV--SGGERKRVSIGQEILINPSLLFLDE 213
K CA L L G LT +G+ SGG+++R+S+ + + + + LD+
Sbjct: 102 KACA--------LEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDD 153
Query: 214 PTSGLDSTIAQQIL-SILLKLANGGRTIVMTIHQ-----PSNMLYYMFH 256
P S +D+ + + I + +L L +T ++ HQ ++ + + +
Sbjct: 154 PLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDN 202
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 3e-16
Identities = 54/196 (27%), Positives = 102/196 (52%), Gaps = 17/196 (8%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF-- 115
+K K +L ++ + G + +++GP+G GK+TLL+ + L + +G IT +G
Sbjct: 8 SKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTS 67
Query: 116 --SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNS---FTEKEKIKCAEAVMTEL 170
S ++ + + QE+ ++ LTV + + F + P S T++++ EA + L
Sbjct: 68 TPSKELAKKLSILKQENHINSRLTVRDLVGFG---RFPYSQGRLTKEDRRIINEA-IEYL 123
Query: 171 GLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSIL 230
L + + + +SGG+R+R I + + + LDEP + LD + QI+ IL
Sbjct: 124 HLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKIL 178
Query: 231 LKLANG-GRTIVMTIH 245
+LA+ G+TIV+ +H
Sbjct: 179 RRLADELGKTIVVVLH 194
|
Length = 252 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.7 bits (191), Expect = 4e-16
Identities = 65/226 (28%), Positives = 106/226 (46%), Gaps = 50/226 (22%)
Query: 45 VYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-- 102
+ +I+ +YG EK +K +T + ++ A++GPSGCGKTTLL ++ R+
Sbjct: 3 IIEIENFSAYYG------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSIN-RMNDH 55
Query: 103 ----RINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTET-----MVFTALLQLPNS 153
R+ G+I + G+ D+ P L VTE MVF P S
Sbjct: 56 IPGFRVEGKIYFKGQ----------------DIYDPQLDVTEYRKKVGMVFQKPTPFPMS 99
Query: 154 FTE-------------KEKI-KCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIG 199
+ K K+ + E + + L + S + P TR +SGG+++R+ I
Sbjct: 100 IYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTR-LSGGQQQRLCIA 158
Query: 200 QEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIH 245
+ + + P ++ LDEPTS LD Q+I +L +L+ TIV+ H
Sbjct: 159 RALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 4e-16
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 17/131 (12%)
Query: 91 TTLLTALGGRLGRINGRITYNGKPFSN-----QMTRNTGFVTQEDVLSPYLTVTETMVFT 145
+TLL + G L +G I +G+ + + + G V Q+ L P LTV E + F
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 146 ALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILIN 205
+KE AE + +GL + + G +SGG+++RV+I + +L
Sbjct: 61 L--------RDKEADARAEEALERVGLPDFLDREPVG----TLSGGQKQRVAIARALLKK 108
Query: 206 PSLLFLDEPTS 216
P LL LDEPT+
Sbjct: 109 PKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.7 bits (191), Expect = 5e-16
Identities = 68/250 (27%), Positives = 121/250 (48%), Gaps = 34/250 (13%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS- 116
+K+ E +LKG++ G++++++G SG GK+T L + G I NG+ +
Sbjct: 12 HKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINL 71
Query: 117 -------------NQM----TRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEK 159
NQ+ TR T V Q L ++TV E V A +Q+ +++E
Sbjct: 72 VRDKDGQLKVADKNQLRLLRTRLT-MVFQHFNLWSHMTVLEN-VMEAPIQVL-GLSKQEA 128
Query: 160 IKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLD 219
+ A + ++G+ E G +SGG+++RVSI + + + P +L DEPTS LD
Sbjct: 129 RERAVKYLAKVGIDERAQ----GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALD 184
Query: 220 STIAQQILSILLKLANGGRTIVMTIHQ------PSNMLYYMFHKVLLLSEGYP--LYSGE 271
+ ++L I+ +LA G+T+V+ H+ S+ + ++ H+ + EG P L+
Sbjct: 185 PELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFL-HQGKIEEEGAPEQLFGNP 243
Query: 272 ASGAMNYFAS 281
S + F
Sbjct: 244 QSPRLQQFLK 253
|
Length = 257 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 5e-16
Identities = 57/209 (27%), Positives = 103/209 (49%), Gaps = 31/209 (14%)
Query: 59 KKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTAL-------GGRLGRINGRITY- 110
K+ +L G+ V GE +A++GPSG GK+T+L L G++ ++ G Y
Sbjct: 8 KRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQI-QVEGEQLYH 66
Query: 111 ----NGK--PFS----NQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQL--PNSFTEKE 158
NG P QM G V Q L P+ TV + + +L L + EK
Sbjct: 67 MPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKR 126
Query: 159 KIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGL 218
++ + V GL++ + + P +SGG+++RV+I + + + P ++ DE TS L
Sbjct: 127 AMELLDMV----GLADKADHM---PAQ--LSGGQQQRVAIARALAMRPKVMLFDEVTSAL 177
Query: 219 DSTIAQQILSILLKLANGGR-TIVMTIHQ 246
D + ++L+++ +LA+ T+++ H+
Sbjct: 178 DPELVGEVLNVIRRLASEHDLTMLLVTHE 206
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 5e-16
Identities = 55/182 (30%), Positives = 94/182 (51%), Gaps = 14/182 (7%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS- 116
K +L I+ + G+M+A+LGPSG GKTTLL + G + +G I ++G S
Sbjct: 9 KKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSR 68
Query: 117 -NQMTRNTGFVTQEDVLSPYLTVTETMVF--TAL--LQLPNSFTEKEKIKCAEAVMTELG 171
+ R GFV Q L ++TV + + F T L + PN+ K K+ T+L
Sbjct: 69 LHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKV-------TQL- 120
Query: 172 LSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL 231
L + + + +SGG+++RV++ + + + P +L LDEP LD+ + +++ L
Sbjct: 121 LEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLR 180
Query: 232 KL 233
+L
Sbjct: 181 QL 182
|
Length = 353 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 5e-16
Identities = 66/261 (25%), Positives = 103/261 (39%), Gaps = 70/261 (26%)
Query: 20 EDQLLEASDVFTRAKHPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEM 79
+ T + + L +D+ +YG + I KGI + ++
Sbjct: 2 TKYNWNERHIITFPEEEIALSTKDL-------HVYYGKKEAI------KGIDMQFEKNKI 48
Query: 80 LAMLGPSGCGKTTLLTALGGRL------GRINGRITYNGKPFSNQMTRNTGFVTQEDVLS 133
A++GPSG GK+T L +L R+ R+ G+I Y G D+
Sbjct: 49 TALIGPSGSGKSTYLRSLN-RMNDTIDIARVTGQILYRGI----------------DINR 91
Query: 134 PYLTVTET-----MVFTALLQLPNSFT---------------EKEKIKCAEAVMTELGLS 173
+ V E MVF Q PN F K+K E V T L +
Sbjct: 92 KEINVYEMRKHIGMVF----QRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQA 147
Query: 174 ----ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSI 229
+ K+ L LT +SGG+++R+ I + I + P +L +DEP S LD Q+
Sbjct: 148 ALWDQVKDDLHKSALT--LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEET 205
Query: 230 LLKLANGGRTIVMTIHQPSNM 250
+ +L TI++ H NM
Sbjct: 206 MFELKK-NYTIIIVTH---NM 222
|
Length = 267 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 6e-16
Identities = 66/218 (30%), Positives = 106/218 (48%), Gaps = 33/218 (15%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN-GRITYNGK----PFSN 117
+ IL GI+ + G+ +A++G SG GK+T+L L R +N G IT +G+
Sbjct: 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLF-RFYDVNSGSITIDGQDIRDVTQQ 333
Query: 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSF-----TEKEKIKCAEAVMTE--- 169
+ R G V Q+ VL F + + T +E AEA
Sbjct: 334 SLRRAIGIVPQDTVL-----------FNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFI 382
Query: 170 LGLSECKNSLIGGPLTRG--VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQIL 227
L E ++ +G RG +SGGE++RV+I + IL NP +L LDE TS LD+ Q I
Sbjct: 383 QSLPEGYDTGVG---ERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQ 439
Query: 228 SILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265
+ L +++ GRT ++ H+ S ++ ++++L G
Sbjct: 440 AALREVS-AGRTTLVIAHRLSTIIDA--DEIIVLDNGR 474
|
Length = 497 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 8e-16
Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 32/251 (12%)
Query: 2 EMIKVVANDINEAQTDQKEDQLLEASDVFTRAKHPVTLKFEDIVYKIKMKKGFYGSNKKI 61
+ + + + ++K + EA + V + + +K
Sbjct: 5 AVAEEAPRRLELSPIERKHQGISEAKASIPGSMSTVAIDLAGV-------------SKSY 51
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQM-- 119
+KA++ G++ V GE +LGP+G GK+T+ + G G+IT G P +
Sbjct: 52 GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARL 111
Query: 120 -TRNTGFVTQEDVLSPYLTVTETM-VFTALLQLPNSFTEKEKIKCAEAVMT---ELGLSE 174
G V Q D L TV E + VF + + EAV+ E E
Sbjct: 112 ARARIGVVPQFDNLDLEFTVRENLLVFGRYFGM--------STREIEAVIPSLLEFARLE 163
Query: 175 CKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLA 234
K L SGG ++R+++ + ++ +P LL LDEPT+GLD I L L
Sbjct: 164 SKADARVSDL----SGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL 219
Query: 235 NGGRTIVMTIH 245
G+TI++T H
Sbjct: 220 ARGKTILLTTH 230
|
Length = 340 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 9e-16
Identities = 66/215 (30%), Positives = 102/215 (47%), Gaps = 36/215 (16%)
Query: 47 KIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRING 106
+I+ K+ Y S K ILK I+ + G + ++GPSG GK+TL+ + + G
Sbjct: 3 EIEFKEVSYSSFGKE----ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEG 58
Query: 107 RITYNGKPFSN----QMTRNTGFVTQEDVLSPYL---TVTETMVFTALLQLPNSFTEKEK 159
I +G + R G V Q+ P+L TV + + + +L+ EK
Sbjct: 59 SILIDGVDIKTIDVIDLRRKIGMVFQQ----PHLFEGTVKDNIEYGPMLK-------GEK 107
Query: 160 IKCAEAVMTELGLSECKNSLIGGPLTRGV---SGGERKRVSIGQEILINPSLLFLDEPTS 216
E ++ +GL++ TR V SGGE +RVSI + + NP +L LDEPTS
Sbjct: 108 NVDVEYYLSIVGLNK-------EYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTS 160
Query: 217 GLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNM 250
LD T + I +++KL N T++ H NM
Sbjct: 161 ALDPTSTEIIEELIVKLKNKMNLTVIWITH---NM 192
|
Length = 241 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 9e-16
Identities = 58/208 (27%), Positives = 100/208 (48%), Gaps = 24/208 (11%)
Query: 54 FYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG----------- 102
+YGSN ++KG+ + + A++GPSGCGK+TLL L
Sbjct: 13 YYGSNH------VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEV 66
Query: 103 RINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKI-K 161
R+ GR Y+ ++ R G V Q P+LT+ + + ++L K+++ +
Sbjct: 67 RLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIG--VKLNGLVKSKKELDE 124
Query: 162 CAEAVMTELGL-SECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDS 220
E + + L E K+ L P +SGG+R+R+ I + + + P +L +DEPT+ +D
Sbjct: 125 RVEWALKKAALWDEVKDRLNDYP--SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDP 182
Query: 221 TIAQQILSILLKLANGGRTIVMTIHQPS 248
+I +L +L TIV+ H P+
Sbjct: 183 VGTAKIEELLFELKK-EYTIVLVTHSPA 209
|
Length = 253 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 1e-15
Identities = 54/217 (24%), Positives = 93/217 (42%), Gaps = 13/217 (5%)
Query: 56 GSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115
G + +L ++ ++ GE + +LG SGCGK+TL L G G +++ G+
Sbjct: 16 GLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDL 75
Query: 116 SNQMTRNTGFVTQEDVL----SPYLTVTETMVFTALLQLP----NSFTEKEKIKCAEAVM 167
Q+ R + DV V M ++ P S E E+ ++
Sbjct: 76 Y-QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELL 134
Query: 168 TELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQIL 227
+GL S L R +SGG+ +R++I + + + P L+ LDE S LD + IL
Sbjct: 135 DMVGL----RSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVIL 190
Query: 228 SILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
+L KL T + I ++ +V ++ +G
Sbjct: 191 ELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKG 227
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 1e-15
Identities = 70/261 (26%), Positives = 111/261 (42%), Gaps = 50/261 (19%)
Query: 47 KIKMKKGFYGSNKK--IEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI 104
+IK+K NKK E KA L ++ + GE +A++G +G GKTT + L L
Sbjct: 2 QIKVKNIVKIFNKKLPTELKA-LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD 60
Query: 105 NGRITYN----------------------GKP------FSNQMTRNTGFVTQEDVLSPYL 136
G I + K ++ R G V Q + Y
Sbjct: 61 TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQ---FAEYQ 117
Query: 137 ----TVTETMVFTALLQLPNSF-TEKEKIKCAEAVMTEL-GLSECKNSLIGGPLTRGVSG 190
T+ + ++F P S KE+ K A EL GL E + L P +SG
Sbjct: 118 LFEQTIEKDIIFG-----PVSMGVSKEEAKKRAAKYIELVGLDE--SYLQRSPF--ELSG 168
Query: 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNM 250
G+++RV++ + + P L DEPT+GLD ++IL I L G+TI++ H N+
Sbjct: 169 GQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNV 228
Query: 251 LYYMFHKVLLLSEGYPLYSGE 271
L + + + +G + G+
Sbjct: 229 LEWT-KRTIFFKDGKIIKDGD 248
|
Length = 305 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 1e-15
Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 22/172 (12%)
Query: 56 GSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115
G +K + K ++ + + GE L +LGPSGCGKTT+L + G +GRI +G+
Sbjct: 19 GISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDI 78
Query: 116 SN----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIK--CAEAV-MT 168
++ NT F Q L P++TV E + F +Q T +I EA+ M
Sbjct: 79 THVPAENRHVNTVF--QSYALFPHMTVFENVAFGLRMQK----TPAAEITPRVMEALRMV 132
Query: 169 EL-GLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLD 219
+L ++ K +SGG+++RV+I + ++ P +L LDE S LD
Sbjct: 133 QLEEFAQRK--------PHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
|
Length = 375 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 2e-15
Identities = 63/241 (26%), Positives = 99/241 (41%), Gaps = 27/241 (11%)
Query: 61 IEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR--INGRITYNGKPFSN- 117
+ E ILKG+ + GE+ A++GP+G GK+TL + G + G I + G+ +
Sbjct: 17 VNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDL 76
Query: 118 ------QMTRNTGF--------VTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCA 163
+ F V+ D L L F LP E + ++
Sbjct: 77 EPEERAHLGIFLAFQYPIEIPGVSNADFLR--LAYNSKRKF---QGLP----ELDPLEFL 127
Query: 164 EAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIA 223
E + +L L S + + G SGGE+KR I Q L++ L LDE SGLD
Sbjct: 128 EIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDAL 187
Query: 224 QQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNYFASIG 283
+ I + KL +I++ H + Y V ++ G + +G+A A G
Sbjct: 188 KIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELA-KELEKKG 246
Query: 284 Y 284
Y
Sbjct: 247 Y 247
|
Length = 252 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 2e-15
Identities = 55/194 (28%), Positives = 100/194 (51%), Gaps = 16/194 (8%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG------GRLGRINGR--ITYNGK 113
E+ +LKGI+ + GEM+A++G SG GK+TL+ LG R+ G+ T +
Sbjct: 19 EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDAD 78
Query: 114 PFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS 173
+ + GF+ Q L +LT + + A+ K+++ A+ ++ LGL
Sbjct: 79 ALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLE 135
Query: 174 ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL 233
+ + L SGG+++RVSI + ++ ++ DEPT LDS +++++IL +L
Sbjct: 136 D-RVEYQPSQL----SGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQL 190
Query: 234 ANGGRTIVMTIHQP 247
+ G T+++ H P
Sbjct: 191 RDRGHTVIIVTHDP 204
|
Length = 648 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 2e-15
Identities = 61/212 (28%), Positives = 102/212 (48%), Gaps = 21/212 (9%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----Q 118
+ +L G+ V+ G ++ ++GP+G GKTTLL A+ G L G + G
Sbjct: 15 DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARA 74
Query: 119 MTRNTGFVTQEDVLSPYLTVTET--MVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK 176
+R V Q+ LS V + M T +++TE ++ E M G+++
Sbjct: 75 ASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDR-AAVERAMERTGVAQ-- 131
Query: 177 NSLIGGPLTRGVSGGERKRV----SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLK 232
P+T +SGGER+RV ++ Q P LL LDEPT+ LD + L ++ +
Sbjct: 132 --FADRPVTS-LSGGERQRVLLARALAQA---TPVLL-LDEPTASLDINHQVRTLELVRR 184
Query: 233 LANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
L + G+T V IH ++ +++LL++G
Sbjct: 185 LVDDGKTAVAAIHD-LDLAARYCDELVLLADG 215
|
Length = 402 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 2e-15
Identities = 55/189 (29%), Positives = 98/189 (51%), Gaps = 19/189 (10%)
Query: 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----QMTR 121
ILKG++ + PG+ +A++G SGCGK+T+++ L +G I +G + +
Sbjct: 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRS 77
Query: 122 NTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIK-CAEAVMTEL--GLSECKNS 178
G V+QE VL T+ E + + T++E + +A + + L + ++
Sbjct: 78 QIGLVSQEPVLF-DGTIAENIRYGK-----PDATDEEVEEAAKKANIHDFIMSLPDGYDT 131
Query: 179 LIGGPLTRGV--SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG 236
L+G RG SGG+++R++I + +L NP +L LDE TS LD+ + + L +
Sbjct: 132 LVG---ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-K 187
Query: 237 GRTIVMTIH 245
GRT ++ H
Sbjct: 188 GRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 2e-15
Identities = 48/181 (26%), Positives = 87/181 (48%), Gaps = 17/181 (9%)
Query: 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN-------QMTRNT-GF 125
V+ GE+ ++G SG GK+TLL + + +G++ +G+ + ++ R
Sbjct: 47 VREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISM 106
Query: 126 VTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT 185
V Q L P+ TV E + F +Q E+ + A + +GL ++
Sbjct: 107 VFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPDE--- 160
Query: 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL-ANGGRTIVMTI 244
+SGG ++RV + + + ++P +L +DE S LD I +++ LL+L A +TIV
Sbjct: 161 --LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFIT 218
Query: 245 H 245
H
Sbjct: 219 H 219
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 3e-15
Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 17/188 (9%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ---M 119
+A+ G++ + GE L + GP+G GKTTLL L G + GR+ NG P Q +
Sbjct: 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSI 71
Query: 120 TRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSL 179
R ++ + L+V E + F + E+++ A A + G +
Sbjct: 72 ARGLLYLGHAPGIKTTLSVLENLRFWH------ADHSDEQVEEALARVGLNGFED----R 121
Query: 180 IGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRT 239
L S G+++RV++ + +L L LDEPT+ LD + + G
Sbjct: 122 PVAQL----SAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGM 177
Query: 240 IVMTIHQP 247
+V+T HQ
Sbjct: 178 VVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 4e-15
Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 7/147 (4%)
Query: 319 LEKEIPSGMYRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLF 378
+EK +Y SA ++ IIS++P K++ VF I Y+M + TA FF L +L
Sbjct: 482 VEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFI 541
Query: 379 SVLVSQGLGLAIGAMVMEQKSATILGSIIMQLFVLAGGYYVQN--VPSFIAWIEYLSIGH 436
L L +IGA+ A +I++ + G+ + + + WI Y++
Sbjct: 542 CTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLA 601
Query: 437 HTYKLLL-----GSQYNYNETYPCGDS 458
+ ++ L+ G ++ ++ P G
Sbjct: 602 YAFESLMVNEFHGRRFECSQYVPSGGG 628
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 4e-15
Identities = 56/211 (26%), Positives = 103/211 (48%), Gaps = 15/211 (7%)
Query: 60 KIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF---- 115
K + IL I+ +KPGE++ ++G SG GK+TL + NGR+ +G
Sbjct: 11 KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALAD 70
Query: 116 SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC 175
+ R G V QE+VL ++ + + E K+ A ++E L E
Sbjct: 71 PAWLRRQVGVVLQENVLFNR-SIRDNIALADPGMSMERVIEAAKLAGAHDFISE--LPEG 127
Query: 176 KNSLIGGPLTRGV--SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL 233
++++G +G SGG+R+R++I + ++ NP +L DE TS LD I+ + +
Sbjct: 128 YDTIVG---EQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDI 184
Query: 234 ANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
GRT+++ H+ S + +++++ +G
Sbjct: 185 C-AGRTVIIIAHRLSTVK--NADRIIVMEKG 212
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 78.5 bits (193), Expect = 4e-15
Identities = 54/172 (31%), Positives = 92/172 (53%), Gaps = 12/172 (6%)
Query: 78 EMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMT---RNTGFVTQEDVLSP 134
++ A LG +G GKTT L+ L G L +G + GK + ++ G Q ++L
Sbjct: 957 QITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFH 1016
Query: 135 YLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK 194
+LTV E ++F A QL E+ +++ EA++ + GL +N + +SGG ++
Sbjct: 1017 HLTVAEHILFYA--QLKGRSWEEAQLE-MEAMLEDTGLHHKRNEE-----AQDLSGGMQR 1068
Query: 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQ 246
++S+ + + ++ LDEPTSG+D + I +LLK GRTI+M+ H
Sbjct: 1069 KLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-RSGRTIIMSTHH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 8e-15
Identities = 56/212 (26%), Positives = 94/212 (44%), Gaps = 35/212 (16%)
Query: 51 KKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN----- 105
K F + K+ LK ++ V GE+ ++G SG GK+TL+ R IN
Sbjct: 8 SKVFGDTGGKVT---ALKDVSLSVPKGEIFGIIGRSGAGKSTLI-----RC--INGLERP 57
Query: 106 --GRITYNGKPFSN-------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTE 156
G + +G + + R G + Q L TV E + L++ +
Sbjct: 58 TSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALP--LEI--AGVP 113
Query: 157 KEKIKC-AEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPT 215
K +I+ ++ +GL + ++ +SGG+++RV I + + NP +L DE T
Sbjct: 114 KAEIEERVLELLELVGLEDKADAYPA-----QLSGGQKQRVGIARALANNPKVLLCDEAT 168
Query: 216 SGLDSTIAQQILSILLKL-ANGGRTIVMTIHQ 246
S LD Q IL++L + G TIV+ H+
Sbjct: 169 SALDPETTQSILALLRDINRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 8e-15
Identities = 59/207 (28%), Positives = 94/207 (45%), Gaps = 17/207 (8%)
Query: 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF----SNQMTR 121
I+ G+ PG + +LGP+G GK+TLL L G L G + G R
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75
Query: 122 NTGFVTQEDVLSPYLTVTETMVFTALLQLPN----SFTEKEKIKCAEAVMTELGLSECKN 177
V Q+ + LTV + + AL ++P+ + + + LS
Sbjct: 76 RVALVEQDSDTAVPLTVRDVV---ALGRIPHRSLWAGDSPHDAAVVDRALARTELS---- 128
Query: 178 SLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGG 237
L ++ +SGGER+RV + + + P LL LDEPT+ LD + L+++ +LA G
Sbjct: 129 HLADRDMST-LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATG 187
Query: 238 RTIVMTIHQPSNMLYYMFHKVLLLSEG 264
T+V +H + Y H V++L G
Sbjct: 188 VTVVAALHDLNLAASYCDH-VVVLDGG 213
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 9e-15
Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 30/178 (16%)
Query: 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNT 123
+ +L+ ++ + PGE + ++G +G GK+TLL L G L +G +T ++
Sbjct: 16 RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK---GLRV---- 68
Query: 124 GFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKI--KCAEAVMTELGLSECKNSLIG 181
G+++QE L P TV + V +L E E+ A+ L E +
Sbjct: 69 GYLSQEPPLDPEKTVLDY-VIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELD 127
Query: 182 G-----------------PLTRGV---SGGERKRVSIGQEILINPSLLFLDEPTSGLD 219
G R V SGG R+RV++ + +L P LL LDEPT+ LD
Sbjct: 128 GWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 1e-14
Identities = 55/188 (29%), Positives = 88/188 (46%), Gaps = 30/188 (15%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTR 121
+ +LK ++ + G+ +A++GP+G GK+TLL L G LG ++G + G+ T
Sbjct: 333 GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKV-GE------TV 385
Query: 122 NTGFVTQE-DVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLI 180
G+ Q D L P TV E L + E+E A + G +
Sbjct: 386 KIGYFDQHRDELDPDKTVLEE-----LSEGFPDGDEQE----VRAYLGRFGFT------- 429
Query: 181 GGPLTRGV---SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGG 237
G + V SGGE+ R+ + + +L P+LL LDEPT+ LD + + L L G
Sbjct: 430 GEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD-IESLEALEEALLDFEG- 487
Query: 238 RTIVMTIH 245
T+++ H
Sbjct: 488 -TVLLVSH 494
|
Length = 530 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 1e-14
Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 17/181 (9%)
Query: 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ--------MTRNTGF 125
+ GE+ ++G SG GK+T + L + G+I +G+ Q + G
Sbjct: 16 IAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGM 75
Query: 126 VTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT 185
V Q+ L P++T+ + L KEK A ++ +GL E ++
Sbjct: 76 VFQQFALFPHMTILQNTSLGPELLGWPEQERKEK---ALELLKLVGLEEYEHRY-----P 127
Query: 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL-ANGGRTIVMTI 244
+SGG ++RV + + + P +L +DE S LD I + L KL A +TIV
Sbjct: 128 DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFIT 187
Query: 245 H 245
H
Sbjct: 188 H 188
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 1e-14
Identities = 64/221 (28%), Positives = 103/221 (46%), Gaps = 33/221 (14%)
Query: 45 VYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-- 102
VY+I +YG + LK I + E+ A++GPSGCGK+T + L +
Sbjct: 12 VYQINGMNLWYGQHHA------LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMV 65
Query: 103 ---RINGRITYNGKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNS 153
++ G + YNG ++ +N G V Q+ +P+ +F + P
Sbjct: 66 PNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKG--NPF----PQSIFDNVAYGPRI 119
Query: 154 FTEKEKIKC---AEAVMTELGL-SECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLL 209
K K K E + ++ L E K+ L L +SGG+++R+ I + + NP +L
Sbjct: 120 HGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQAL--SLSGGQQQRLCIARALATNPDVL 177
Query: 210 FLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNM 250
+DEPTS LD ++I ++LKL TIV+ H NM
Sbjct: 178 LMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTH---NM 214
|
Length = 259 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 1e-14
Identities = 55/206 (26%), Positives = 100/206 (48%), Gaps = 16/206 (7%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS----NQ 118
K IL ++ + G++ A++GP+GCGK+TLL L +G + KP S Q
Sbjct: 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQ 73
Query: 119 MTRNTGFVTQEDVLSPYLTVTETMVF--TALLQLPNSFTEKEKIKCAEAVMTELGLSECK 176
+ R + Q + +TV E + + + L L + ++ + +A M + ++
Sbjct: 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQA-MEQTRINH-- 130
Query: 177 NSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQI--LSILLKLA 234
L LT +SGG+R+R + + + ++ LDEPT+ LD I Q+ + ++ +L
Sbjct: 131 --LADRRLTD-LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD--INHQVELMRLMRELN 185
Query: 235 NGGRTIVMTIHQPSNMLYYMFHKVLL 260
G+T+V +H + Y H V+L
Sbjct: 186 TQGKTVVTVLHDLNQASRYCDHLVVL 211
|
Length = 255 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 1e-14
Identities = 46/191 (24%), Positives = 83/191 (43%), Gaps = 16/191 (8%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQM--- 119
E+ + ++ + GE L + GP+G GKTTLL L G L G + + G+P N
Sbjct: 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESY 73
Query: 120 TRNTGFVTQEDVLSPYLTVTETMVF-TALLQLPNSFTEKEKIKCAEAVMTELGLSECKNS 178
+ ++ + + LT E + F N+ T + ++GL+
Sbjct: 74 HQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAAT-------IWEALAQVGLAG---- 122
Query: 179 LIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGR 238
+ +S G+++RV++ + L L LDEP + LD + +++ A G
Sbjct: 123 -LEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGG 181
Query: 239 TIVMTIHQPSN 249
+++T HQP
Sbjct: 182 IVLLTTHQPLP 192
|
Length = 209 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 2e-14
Identities = 50/160 (31%), Positives = 86/160 (53%), Gaps = 12/160 (7%)
Query: 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ--MTRNTGFVTQEDV 131
V+ GE +A+LGPSG GK+TLL + G L +G +T NG+ + R + QE+
Sbjct: 22 VERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENN 81
Query: 132 LSPYLTVTETMVFTALLQLPN-SFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190
L +LTV + + L P ++ K A+ ++G+ + L G +SG
Sbjct: 82 LFSHLTVAQNI---GLGLNPGLKLNAAQREK-LHAIARQMGIEDLLARLPG-----QLSG 132
Query: 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSIL 230
G+R+RV++ + ++ +L LDEP S LD + Q++L+++
Sbjct: 133 GQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLV 172
|
Length = 232 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 2e-14
Identities = 69/235 (29%), Positives = 106/235 (45%), Gaps = 36/235 (15%)
Query: 61 IEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGR--LGRINGRITYNGKPFSNQ 118
+E+KAIL+G+ V+PGE+ A++GP+G GK+TL L GR G + + GK
Sbjct: 11 VEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLE- 69
Query: 119 MTRNTGFVTQEDVLSPYLTVTET--MVFTALLQLP---NSFTEKEKIKCAEAVMTELGLS 173
LSP E M F +++P N F + + + + L
Sbjct: 70 -------------LSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLD 116
Query: 174 --------ECKNSLIGGP---LTR----GVSGGERKRVSIGQEILINPSLLFLDEPTSGL 218
E K +L+ P LTR G SGGE+KR I Q ++ P L LDE SGL
Sbjct: 117 RFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGL 176
Query: 219 DSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273
D + + + L +G R+ ++ H + Y V +L +G + SG+ +
Sbjct: 177 DIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 231
|
Length = 248 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 2e-14
Identities = 61/191 (31%), Positives = 95/191 (49%), Gaps = 23/191 (12%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS----NQMTRN 122
L G+ V+PGE +A++GPSG GK+TL L +GRI +G ++
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR 415
Query: 123 TGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTE--LGLSECKNSLI 180
V Q+ VL +V E + + P++ E+ + A E L E ++ +
Sbjct: 416 MALVPQDPVLFAA-SVMENIRYGR----PDATDEEVEAAARAAHAHEFISALPEGYDTYL 470
Query: 181 GGPLTRGV--SGGERKRVSIGQEILINPSLLFLDEPTSGLDS---TIAQQILSILLKLAN 235
G RGV SGG+R+R++I + IL + +L LDE TS LD+ + QQ L L+K
Sbjct: 471 G---ERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMK--- 524
Query: 236 GGRTIVMTIHQ 246
GRT ++ H+
Sbjct: 525 -GRTTLIIAHR 534
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.8 bits (178), Expect = 2e-14
Identities = 58/203 (28%), Positives = 100/203 (49%), Gaps = 25/203 (12%)
Query: 54 FYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLL---TALGGRLGRINGRITY 110
FYG +K L I ++ ++ A++G SGCGK+T L + ++ +I+G +
Sbjct: 11 FYG------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEI 64
Query: 111 NGKPFSNQ----MTRNTGFVTQED---VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCA 163
GK NQ + +N G V Q+ V S Y ++ +++ + E+
Sbjct: 65 EGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIK-----NKDEEEALV 119
Query: 164 EAVMTELGL-SECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTI 222
+ ++GL E K+ L L +SGG+++R+ I + + I P LL LDEPTS LD I
Sbjct: 120 VDCLQKVGLFEEVKDKLKQNAL--ALSGGQQQRLCIARALAIKPKLLLLDEPTSALDP-I 176
Query: 223 AQQILSILLKLANGGRTIVMTIH 245
+ ++ LLK + +++M H
Sbjct: 177 SSGVIEELLKELSHNLSMIMVTH 199
|
Length = 246 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 2e-14
Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 17/188 (9%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP--FSNQMT 120
+ + G++ + GE L + GP+G GKTTLL + G L G I +G +
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAE 73
Query: 121 RNTGFVTQEDVLSPYLTVTETMVFTA-LLQLPNSFTEKEKIKCAEAVMTELGLSECKNSL 179
++ + + P LTV E + F A L A + +GL+ + L
Sbjct: 74 ACH-YLGHRNAMKPALTVAENLEFWAAFLGGEELD--------IAAALEAVGLAPLAH-L 123
Query: 180 IGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRT 239
G L S G+++RV++ + ++ N + LDEPT+ LD+ ++ G
Sbjct: 124 PFGYL----SAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGI 179
Query: 240 IVMTIHQP 247
++ H P
Sbjct: 180 VIAATHIP 187
|
Length = 207 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 75.8 bits (186), Expect = 3e-14
Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 11/175 (6%)
Query: 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMT---RNTGFVTQED 130
V+PGE +LG +G GKTT L G +G T GK ++ +N G+ Q D
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFD 2021
Query: 131 VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190
+ LT E + A L+ +E K A + LGLS + L G SG
Sbjct: 2022 AIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAGT-----YSG 2073
Query: 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIH 245
G ++++S ++ P L+ LDEPT+G+D + + + ++ + GR +V+T H
Sbjct: 2074 GNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 3e-14
Identities = 55/201 (27%), Positives = 88/201 (43%), Gaps = 55/201 (27%)
Query: 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGG--RLGRINGRITYNGKPFSNQMTR 121
+ +LK ++ +KPG+ L + GPSG GK++L AL G G +GRI G P +
Sbjct: 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG--SGRI---GMPEGEDLL- 67
Query: 122 NTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIG 181
F+ Q PYL + T +E++
Sbjct: 68 ---FLPQR----PYLPLG---------------TLREQL--------------IY----- 86
Query: 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIV 241
P +SGGE++R++ + +L P +FLDE TS LD ++ +L +L G T++
Sbjct: 87 -PWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVI 142
Query: 242 MTIHQPSNMLYYMFHKVLLLS 262
H+PS + +VL L
Sbjct: 143 SVGHRPSLWKF--HDRVLDLD 161
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 3e-14
Identities = 59/194 (30%), Positives = 95/194 (48%), Gaps = 13/194 (6%)
Query: 56 GSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115
G +K +K ++ ++ + GE +LGP+G GK+T+ L G + G+IT G+P
Sbjct: 9 GVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPV 68
Query: 116 SNQ--MTR-NTGFVTQEDVLSPYLTVTETM-VFTALLQLPNSFTEKEKIKCAEAVMTELG 171
++ + R G V Q D L P TV E + VF + +I+ + E
Sbjct: 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGM-----STREIEAVIPSLLEFA 123
Query: 172 LSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL 231
E K + L SGG ++R+++ + ++ +P LL LDEPT+GLD I L
Sbjct: 124 RLESKADVRVALL----SGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLR 179
Query: 232 KLANGGRTIVMTIH 245
L G+TI++T H
Sbjct: 180 SLLARGKTILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 3e-14
Identities = 70/216 (32%), Positives = 104/216 (48%), Gaps = 24/216 (11%)
Query: 59 KKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ 118
K + I K I + GE + +GPSGCGK+TLL + G L I + G+ N
Sbjct: 11 KAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG-LEDITSGDLFIGEKRMND 69
Query: 119 ---MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKI-KCAEAVMTELGLSE 174
R G V Q L P+L+V E M F L+L +KE+I + V L L+
Sbjct: 70 VPPAERGVGMVFQSYALYPHLSVAENMSFG--LKLAG--AKKEEINQRVNQVAEVLQLAH 125
Query: 175 CKNSLIGGPLTR---GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL 231
L R +SGG+R+RV+IG+ ++ PS+ LDEP S LD+ + Q+ +
Sbjct: 126 L--------LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEIS 177
Query: 232 KLANG-GRTIVMTIH-QPSNMLYYMFHKVLLLSEGY 265
+L GRT++ H Q M + K+++L G
Sbjct: 178 RLHKRLGRTMIYVTHDQVEAMT--LADKIVVLDAGR 211
|
Length = 369 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 6e-14
Identities = 71/252 (28%), Positives = 100/252 (39%), Gaps = 67/252 (26%)
Query: 31 TRAKHPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGK 90
+ L E +++ FYG +K L I+ + + A +GPSGCGK
Sbjct: 11 LPLLDVLNLSDEQTALEVRNLNLFYG------DKQALFDISMRIPKNRVTAFIGPSGCGK 64
Query: 91 TTLLTALGGRLG------RINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTET--- 141
+TLL R+ RI G I +G +++ + V E
Sbjct: 65 STLLRCF-NRMNDLVDNCRIEGEIRLDG----------------QNIYDKKVDVAELRRR 107
Query: 142 --MVFTALLQLPNSFTE---------------KEKIKCAEAVMTEL---GL-SECKNSLI 180
MVF Q PN F + + EAV L L E K+ L
Sbjct: 108 VGMVF----QRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLH 163
Query: 181 GGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLD--STIAQQILSILLKLANGGR 238
G+SGG+++R+ I + I I P +L LDEPTS LD ST+ + L LK
Sbjct: 164 ENAF--GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELK---SKY 218
Query: 239 TIVMTIHQPSNM 250
TIV+ H NM
Sbjct: 219 TIVIVTH---NM 227
|
Length = 272 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 6e-14
Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 17/189 (8%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTR 121
+ + +L + V+PGE L + G SG GKT+LL AL G +GRI+ P +
Sbjct: 404 DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISM---PADS---- 456
Query: 122 NTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIG 181
F+ Q PYL F++ E AV+ ++GL + L
Sbjct: 457 ALLFLPQR----PYLPQGTLREALCYPNAAPDFSDAE----LVAVLHKVGLGDLAERLDE 508
Query: 182 -GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTI 240
R +SGGE++R++ + +L P +FLDE TS LD ++ LLK T+
Sbjct: 509 EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQ-LLKEELPDATV 567
Query: 241 VMTIHQPSN 249
+ H+P+
Sbjct: 568 ISVGHRPTL 576
|
Length = 604 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 7e-14
Identities = 65/228 (28%), Positives = 99/228 (43%), Gaps = 54/228 (23%)
Query: 47 KIKMKKG----FYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG 102
KIKM+ +YG EK L I + ++ A++GPSGCGK+T L L R+
Sbjct: 2 KIKMESKNLNLWYG------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLN-RMN 54
Query: 103 ------RINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFT- 155
+I G + +GK + +DV L MVF Q PN F
Sbjct: 55 DLISNVKIEGEVLLDGKN-----------IYDKDVDVVELRKRVGMVF----QKPNPFPM 99
Query: 156 -----------------EKEKIKCAEAVMTELGL-SECKNSLIGGPLTRGVSGGERKRVS 197
+KE K E + + L E K+ L L +SGG+++R+
Sbjct: 100 SIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSAL--KLSGGQQQRLC 157
Query: 198 IGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIH 245
I + I + P ++ +DEPTS LD +I ++++L TIV+ H
Sbjct: 158 IARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTH 204
|
Length = 251 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 8e-14
Identities = 67/218 (30%), Positives = 109/218 (50%), Gaps = 14/218 (6%)
Query: 61 IEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMT 120
+K L+GI+ ++ GE LA++GPSG GK+TL + G +G + +G Q
Sbjct: 328 GGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADL-KQWD 386
Query: 121 RNT-----GFVTQEDVLSPYLTVTETMV-FTALLQLPNSFTEKEKIKCAEAVMTELGLSE 174
R T G++ Q+ L P TV E + F P E K+ ++ L L +
Sbjct: 387 RETFGKHIGYLPQDVELFPG-TVAENIARFGENAD-PEKIIEAAKLAGVHELI--LRLPD 442
Query: 175 CKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLA 234
+++I GP +SGG+R+R+++ + + +P L+ LDEP S LD Q + + + L
Sbjct: 443 GYDTVI-GPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALK 501
Query: 235 NGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272
G T+V+ H+PS L K+L+L +G GE
Sbjct: 502 ARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGER 537
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 9e-14
Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 13/199 (6%)
Query: 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLG----RINGRITYNGKPFSNQMTRN--TGFVT 127
+K GE+LA++G SG GK+ A+ G L + +G I +G+P R +
Sbjct: 9 LKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIM 68
Query: 128 QE--DVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT 185
Q +P T+ + T L+ +++ + EA + +GL + + L P
Sbjct: 69 QNPRTAFNPLFTMGNHAIET--LRSLGKLSKQARALILEA-LEAVGLPDPEEVLKKYPFQ 125
Query: 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIH 245
+SGG +RV I +L+ P L DEPT+ LD ++L +L +L T ++ I
Sbjct: 126 --LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLIT 183
Query: 246 QPSNMLYYMFHKVLLLSEG 264
++ + +V ++ +G
Sbjct: 184 HDLGVVARIADEVAVMDDG 202
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 1e-13
Identities = 50/192 (26%), Positives = 96/192 (50%), Gaps = 16/192 (8%)
Query: 59 KKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF--- 115
K + L ++ + G ++ LGP+G GK+T + + G L +G + G+
Sbjct: 10 KLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQN 69
Query: 116 SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC 175
++ RN G++ + + L + V E + F A + K+++ E ++ +GL
Sbjct: 70 PKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRV---EEMIELVGLRPE 126
Query: 176 KNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSI--LLKL 233
++ IG +S G R+RV + Q ++ +P +L LDEPT+GLD Q++ I ++K
Sbjct: 127 QHKKIGQ-----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDP---NQLVEIRNVIKN 178
Query: 234 ANGGRTIVMTIH 245
+TI+++ H
Sbjct: 179 IGKDKTIILSTH 190
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 1e-13
Identities = 51/218 (23%), Positives = 103/218 (47%), Gaps = 14/218 (6%)
Query: 60 KIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ- 118
+ +++ +LKG+ + ++G +GCGK+TL L G L G + + GKP
Sbjct: 10 RYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSK 69
Query: 119 -----MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS 173
+ + V Q+ + T ++ + +L L E E + + +T +
Sbjct: 70 RGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL--GVPEAEITRRVDEALTLVDAQ 127
Query: 174 ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL 233
++ I + +S G++KRV+I +++ L LDEPT+GLD Q+++I+ ++
Sbjct: 128 HFRHQPI-----QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRI 182
Query: 234 ANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271
G ++++ H +++Y + V +L +G L G
Sbjct: 183 VAQGNHVIISSHD-IDLIYEISDAVYVLRQGQILTHGA 219
|
Length = 271 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 1e-13
Identities = 59/174 (33%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 77 GEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--QMTRNTGFVTQEDVLSP 134
GE+ A+LG SGCGK+TLL L G G+I +G S+ R + Q L P
Sbjct: 45 GEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFP 104
Query: 135 YLTVTETMVFTALLQ--LPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192
++TV + + F L Q LP K +I M LGL + P +SGG+
Sbjct: 105 HMTVEQNIAF-GLKQDKLP-----KAEIASRVNEM--LGLVHMQEFAKRKP--HQLSGGQ 154
Query: 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQI-LSILLKLANGGRTIVMTIH 245
R+RV++ + + P LL LDEP LD + ++ L ++ L G T VM H
Sbjct: 155 RQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTH 208
|
Length = 377 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 1e-13
Identities = 50/218 (22%), Positives = 96/218 (44%), Gaps = 31/218 (14%)
Query: 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNT 123
+ +L ++ +K GE +A+LG SGCGK+TL L G G +++ G+P + ++ R
Sbjct: 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLA-KLNRAQ 83
Query: 124 GFVTQEDVLSPYLTVTETMVFT-------------ALLQLP----NSFTEKEKIKCAEAV 166
+ D+ MVF +++ P S + E++ A +
Sbjct: 84 RKAFRRDI---------QMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEM 134
Query: 167 MTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQI 226
+ + L + + +SGG+ +RV + + + + P LL LDE S LD + +
Sbjct: 135 LRAVDLDDS----VLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGV 190
Query: 227 LSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
+ +L KL T + I ++ +V+++ G
Sbjct: 191 IRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNG 228
|
Length = 268 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 17/181 (9%)
Query: 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNG--------KPFSNQMTRNTGF 125
V+ GE+ ++G SG GK+TL+ L + G I +G +
Sbjct: 51 VEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISM 110
Query: 126 VTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT 185
V Q L P+ TV E + F +Q + E+ + A + +GL +
Sbjct: 111 VFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYP----- 162
Query: 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL-ANGGRTIVMTI 244
+SGG ++RV + + + +P +L +DE S LD I ++ LL+L A +TIV
Sbjct: 163 NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFIT 222
Query: 245 H 245
H
Sbjct: 223 H 223
|
Length = 386 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 2e-13
Identities = 56/189 (29%), Positives = 92/189 (48%), Gaps = 18/189 (9%)
Query: 82 MLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--QMTRNTGFVTQEDVLSPYLTVT 139
+LGPSGCGKTTLL L G +G I +G+ +N R+ V Q L P++TV
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 140 ETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIG 199
E + F ++ + +IK V+ L L + + P +SGG+++RV++
Sbjct: 61 ENVAFGLKMRK----VPRAEIK--PRVLEALRLVQLEEFADRKPHQ--LSGGQQQRVALA 112
Query: 200 QEILINPSLLFLDEPTSGLDSTIAQQ----ILSILLKLANGGRTIVMTIHQPSNMLYYMF 255
+ ++ P +L LDEP S LD + Q + +I +L G T V H + M
Sbjct: 113 RALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL---GITFVFVTHDQEEAM-TMS 168
Query: 256 HKVLLLSEG 264
++ ++ +G
Sbjct: 169 DRIAIMRKG 177
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (170), Expect = 2e-13
Identities = 52/193 (26%), Positives = 93/193 (48%), Gaps = 22/193 (11%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLL------------TALGGRLGRINGRITYNGKP 114
LKGI+ ++ ++A +GPSGCGK+T L T L G + RI+GR Y+
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEI-RIDGRNIYDKGV 77
Query: 115 FSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQ--LPNSFTEKEKIKCAEAVMTELGL 172
+++ +N G V Q P ++ E + + + N+F + + +
Sbjct: 78 QVDELRKNVGMVFQRPNPFPK-SIFENVAYGLRVNGVKDNAFIRQRVEETLKGAAL---W 133
Query: 173 SECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLK 232
E K+ L +SGG+++R+ I + + ++PS+L +DEP S LD ++ ++ +
Sbjct: 134 DEVKDKLKESAF--ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHE 191
Query: 233 LANGGRTIVMTIH 245
L TIV+ H
Sbjct: 192 LKK-DYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 2e-13
Identities = 56/201 (27%), Positives = 97/201 (48%), Gaps = 25/201 (12%)
Query: 55 YGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP 114
Y +K+ L I + +A++GP+G GK+TL G L +G + G+P
Sbjct: 13 YSGSKEA-----LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEP 67
Query: 115 FS----NQMTRNTGFVTQ---EDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKC-AEAV 166
+ ++ + G V Q + + SP TV + + F + N ++E + +
Sbjct: 68 ITKENIREVRKFVGLVFQNPDDQIFSP--TVEQDIAFGPI----NLGLDEETVAHRVSSA 121
Query: 167 MTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQI 226
+ LGL E ++ + +SGGE+KRV+I I + P +L LDEPT+GLD +++
Sbjct: 122 LHMLGLEELRDRV-----PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKEL 176
Query: 227 LSILLKLANG-GRTIVMTIHQ 246
+ L L G T++ + HQ
Sbjct: 177 IDFLNDLPETYGMTVIFSTHQ 197
|
Length = 277 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 2e-13
Identities = 70/234 (29%), Positives = 103/234 (44%), Gaps = 65/234 (27%)
Query: 47 KIKMK----KGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG 102
+IKM+ FYG EK L + + + A +GPSGCGK+T L L R+
Sbjct: 17 EIKMRARDVSVFYG------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLN-RMN 69
Query: 103 ------RINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTET-----MVFTALLQLP 151
R+ G+IT +G ED+ P L V E MVF Q P
Sbjct: 70 DTIDGCRVTGKITLDG----------------EDIYDPRLDVVELRARVGMVF----QKP 109
Query: 152 NSFTE----------------KEKIKCAEAVMTEL---GL-SECKNSLIGGPLTRGVSGG 191
N F + + K + E V T L GL E K+ L P T G+SGG
Sbjct: 110 NPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRL-HEPGT-GLSGG 167
Query: 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIH 245
+++R+ I + I ++P ++ +DEP S LD ++ ++ +L TIV+ H
Sbjct: 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL-RQNYTIVIVTH 220
|
Length = 267 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 2e-13
Identities = 62/229 (27%), Positives = 101/229 (44%), Gaps = 32/229 (13%)
Query: 68 KGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGK-PFSNQMTRNTGFV 126
+ I+ + GE++ LG +G GK+T L L G L +G++ NGK PF +
Sbjct: 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRR-------- 92
Query: 127 TQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSL------- 179
E+ L + +V LQL + ++ + + E+ E L
Sbjct: 93 --EEYLR-----SIGLVMGQKLQLWWDLPALDSLEVLKLIY-EIPDDEFAERLDFLTEIL 144
Query: 180 -IGGPLT---RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN 235
+ G L R +S G+R R + +L P +LFLDEPT GLD AQ + LK N
Sbjct: 145 DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLD-VNAQANIREFLKEYN 203
Query: 236 GGR--TIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNYFASI 282
R T+++T H + + + +VLL+ +G ++ G + F
Sbjct: 204 EERQATVLLTTHIFDD-IATLCDRVLLIDQGQLVFDGTLAQLQEQFGPY 251
|
Length = 325 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 2e-13
Identities = 53/184 (28%), Positives = 83/184 (45%), Gaps = 10/184 (5%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS----NQMTRN 122
++ VK GE+ A+LG +G GK+TL+ L G +G I +GK R
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79
Query: 123 -TGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIG 181
G V Q +L P LTV E ++ ++ + + GL ++ +
Sbjct: 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA 139
Query: 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIV 241
+S GE++RV I + + LL LDEPT+ L A ++ IL +LA G+TI+
Sbjct: 140 D-----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTII 194
Query: 242 MTIH 245
H
Sbjct: 195 FITH 198
|
Length = 501 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 3e-13
Identities = 59/216 (27%), Positives = 96/216 (44%), Gaps = 18/216 (8%)
Query: 42 EDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL 101
E I+ + K + ++ + KA+ ++ VK GE+ ++G SG GKTTL + G L
Sbjct: 277 EPIIKVRNVSKRYISVDRGVV-KAV-DNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVL 334
Query: 102 ----GRINGRI-------TYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQL 150
G +N R+ T G + R G + QE L P+ TV + + L+L
Sbjct: 335 EPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLEL 394
Query: 151 PNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLF 210
P+ + + + V G E K I +S GER RV++ Q ++ P ++
Sbjct: 395 PDELARMKAVITLKMV----GFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVI 450
Query: 211 LDEPTSGLDSTIAQQIL-SILLKLANGGRTIVMTIH 245
LDEPT +D + SIL +T ++ H
Sbjct: 451 LDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSH 486
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 3e-13
Identities = 56/203 (27%), Positives = 103/203 (50%), Gaps = 12/203 (5%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFV 126
L+G+T ++PGEM + G SG GK+TLL + G G+I ++G + R F+
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 127 TQEDVL---SPYLTVTETMVFTALLQLPNSFTEKEKIKC-AEAVMTELGL-SECKNSLIG 181
++ + +L + T+ + L + + I+ A + ++GL + KN I
Sbjct: 78 RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQ 137
Query: 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIV 241
+SGGE++RV I + ++ P++L DEPT LD +++ IL + + G T++
Sbjct: 138 ------LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVL 191
Query: 242 MTIHQPSNMLYYMFHKVLLLSEG 264
M H ++ +++L LS+G
Sbjct: 192 MATHD-IGLISRRSYRMLTLSDG 213
|
Length = 222 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 3e-13
Identities = 58/249 (23%), Positives = 108/249 (43%), Gaps = 47/249 (18%)
Query: 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG 98
+ D+ Y YG I L I+ +K ++G SG GK+TL L
Sbjct: 474 IVINDVSYS-------YGYGSNI-----LSDISLTIKMNSKTTIVGMSGSGKSTLAKLLV 521
Query: 99 GRLGRINGRITYNGKPFSN----QMTRNTGFVTQEDVLSPYL---TVTETMVFTALLQLP 151
G +G I NG + + + ++ QE PY+ ++ E ++ A
Sbjct: 522 GFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQE----PYIFSGSILENLLLGA----- 572
Query: 152 NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRG---------VSGGERKRVSIGQEI 202
+++I A ++E K+ + PL +SGG+++R+++ + +
Sbjct: 573 KENVSQDEIWAA------CEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARAL 626
Query: 203 LINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262
L + +L LDE TS LD+ ++I++ LL L + +TI+ H+ S + K+++L
Sbjct: 627 LTDSKVLILDESTSNLDTITEKKIVNNLLNLQD--KTIIFVAHRLS--VAKQSDKIIVLD 682
Query: 263 EGYPLYSGE 271
G + G
Sbjct: 683 HGKIIEQGS 691
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 3e-13
Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 48/187 (25%)
Query: 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNT 123
K ++ ++ V+ GE++ + G G G+T L AL G +G IT +GKP + + R+
Sbjct: 13 KGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDA 72
Query: 124 -----GFVT---QEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC 175
+V + + L L+V E + ++LL
Sbjct: 73 IRAGIAYVPEDRKREGLVLDLSVAENIALSSLL--------------------------- 105
Query: 176 KNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN 235
SGG +++V + + + +P +L LDEPT G+D +I ++ +LA+
Sbjct: 106 -------------SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELAD 152
Query: 236 GGRTIVM 242
G+ +++
Sbjct: 153 AGKAVLL 159
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 5e-13
Identities = 59/224 (26%), Positives = 105/224 (46%), Gaps = 32/224 (14%)
Query: 48 IKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGR 107
+++ G++ + A L I + G++ ++G GCGK++LL A+ G + + G+
Sbjct: 1 VQVTNGYFSWGSGL---ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGK 57
Query: 108 ITYNGKPFSNQMTRNTGFVTQEDVL----SPYL---TVTETMVFTALLQLPNSFTEKEKI 160
+ ++ K S T + V P+L TV E + F S K++
Sbjct: 58 VHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITF-------GSPFNKQRY 110
Query: 161 KCAEAVMTELGLSECKNSLIGGPLT----RGV--SGGERKRVSIGQEILINPSLLFLDEP 214
K AV L + L G T RG+ SGG+R+R+ + + + N +++FLD+P
Sbjct: 111 K---AVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDP 167
Query: 215 TSGLDSTIAQQILS--ILLKLANGGRTIVMTIHQPSNMLYYMFH 256
S LD ++ ++ IL L + RT+V+ H+ L Y+ H
Sbjct: 168 FSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHK----LQYLPH 207
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 5e-13
Identities = 48/221 (21%), Positives = 94/221 (42%), Gaps = 40/221 (18%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS----N 117
+LK I+ +KPGE + ++G +G GK++LL AL + +G I +G S +
Sbjct: 15 NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLH 74
Query: 118 QMTRNTGFVTQEDV---------LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMT 168
+ + Q+ V L P+ ++ ++ AL E++ E V +
Sbjct: 75 DLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQAL----------ERVGLKEFVES 124
Query: 169 ELG-----LSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIA 223
G + E +L S G+R+ + + + +L +L LDE T+ +D
Sbjct: 125 LPGGLDTVVEEGGENL---------SVGQRQLLCLARALLRKSKILVLDEATASVDPETD 175
Query: 224 QQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
I ++ A T++ H+ ++ ++L+L +G
Sbjct: 176 ALIQK-TIREAFKDCTVLTIAHRLDTIIDS--DRILVLDKG 213
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 6e-13
Identities = 61/219 (27%), Positives = 102/219 (46%), Gaps = 21/219 (9%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKT-TLLTALG----GRLGRINGRITYNGKPF- 115
+KGI+ ++ GE LA++G SG GK+ T L+ LG +G I ++G+
Sbjct: 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLL 80
Query: 116 ---SNQMTRNTG----FVTQEDV--LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAV 166
Q+ G + QE + L+P T+ + + +L+L + A +
Sbjct: 81 AASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLA--EVLRLHRGLSRAAARARALEL 138
Query: 167 MTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQI 226
+ +G+ E + L P +SGG+R+RV I + P LL DEPT+ LD T+ QI
Sbjct: 139 LELVGIPEPEKRLDAYP--HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQI 196
Query: 227 LSILLKL-ANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
L +L +L A G I+ H ++ +V ++ G
Sbjct: 197 LDLLKELQAELGMAILFITHD-LGIVRKFADRVYVMQHG 234
|
Length = 534 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 6e-13
Identities = 59/162 (36%), Positives = 88/162 (54%), Gaps = 22/162 (13%)
Query: 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI-NGRITYNGKPFSNQMT---R 121
++KGI V GE + ++GPSGCGK+TLL + G L RI +G I G+ N++ R
Sbjct: 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAG-LERITSGEIWIGGRVV-NELEPADR 76
Query: 122 NTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKI--KCAEAV-MTELG-LSECKN 177
+ V Q L P+++V E M + L K +I + AEA + EL L + K
Sbjct: 77 DIAMVFQNYALYPHMSVRENMAYG----LKIRGMPKAEIEERVAEAARILELEPLLDRK- 131
Query: 178 SLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLD 219
P R +SGG+R+RV++G+ I+ P++ DEP S LD
Sbjct: 132 -----P--RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
|
Length = 356 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 6e-13
Identities = 59/218 (27%), Positives = 91/218 (41%), Gaps = 54/218 (24%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG------RINGRITYN 111
N ++ ILK + + + A++GPSGCGK+T + L R+ R G I +
Sbjct: 10 NTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLN-RMNDLIPGFRHEGHIYLD 68
Query: 112 GKPFSNQMTRNTGFVTQEDVLSPYLTVTET-----MVFTALLQLPNSFT----------- 155
G D+ P + V E MVF Q PN F
Sbjct: 69 GV----------------DIYDPAVDVVELRKKVGMVF----QKPNPFPKSIFDNVAYGL 108
Query: 156 ----EKEKIKCAEAVMTELGLS----ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPS 207
E ++ E V L + E K+ L L G+SGG+++R+ I + I ++P
Sbjct: 109 RIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSAL--GLSGGQQQRLCIARTIAVSPE 166
Query: 208 LLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIH 245
++ +DEP S LD +I ++ KL TIV+ H
Sbjct: 167 VILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 9e-13
Identities = 63/214 (29%), Positives = 107/214 (50%), Gaps = 24/214 (11%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN---- 117
++K ILKGI+ ++ GE L ++GPSG GK+TL L G +G + +G
Sbjct: 347 QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDRE 406
Query: 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEK---EKI----KCAEAVMTEL 170
Q+ R+ G++ Q+ L T+ E + F E+ EK+ + A L
Sbjct: 407 QLGRHIGYLPQDVELFDG-TIAENIA---------RFGEEADPEKVIEAARLAGVHELIL 456
Query: 171 GLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSIL 230
L + ++ IG +SGG+R+R+++ + + +P L+ LDEP S LDS + + +
Sbjct: 457 RLPQGYDTRIG-EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAI 515
Query: 231 LKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
L G T+V+ H+PS + K+L+L +G
Sbjct: 516 LAAKARGGTVVVIAHRPSALA--SVDKILVLQDG 547
|
Length = 580 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 9e-13
Identities = 62/220 (28%), Positives = 101/220 (45%), Gaps = 29/220 (13%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGK-----PFSNQMTR 121
L ++ + GE++ ++G +G GKTTLL L G +GRI ++GK + M
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMRE 80
Query: 122 NTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTEL--GLSECKNSL 179
V + + +TV E + F E+++ + + EL L E +
Sbjct: 81 AVAIVPEGRRVFSRMTVEENLAMGGF------FAERDQFQERIKWVYELFPRLHERRIQR 134
Query: 180 IGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRT 239
G +SGGE++ ++IG+ ++ P LL LDEP+ GL I QQI + +L G T
Sbjct: 135 AGT-----MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMT 189
Query: 240 IVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG----EASGA 275
I + + Q +N + L GY L +G E +G
Sbjct: 190 IFL-VEQNAN------QALKLADRGYVLENGHVVLEDTGD 222
|
Length = 237 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-12
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117
+ + + L ++ +K GE++A++GP+G GK+TLL A+ G L +G I +GK +
Sbjct: 6 SFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAK 65
Query: 118 ----QMTRNTGFVTQ 128
++ R G+V Q
Sbjct: 66 LPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 1e-12
Identities = 52/195 (26%), Positives = 91/195 (46%), Gaps = 21/195 (10%)
Query: 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNT-- 123
+LK ++ V GE +A+ GPSG GK+TLL +L +GRI + + + +
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 124 ----------GFVTQ-EDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGL 172
G+V+Q V+ P ++ E +V LL+ + A ++ L +
Sbjct: 83 EVLEVRRKTIGYVSQFLRVI-PRVSALE-VVAEPLLE--RGVPREAARARARELLARLNI 138
Query: 173 SECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLK 232
E L P T SGGE++RV+I + + + +L LDEPT+ LD+ Q ++ ++ +
Sbjct: 139 PERLWHL--PPAT--FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAE 194
Query: 233 LANGGRTIVMTIHQP 247
G ++ H
Sbjct: 195 AKARGAALIGIFHDE 209
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 1e-12
Identities = 50/187 (26%), Positives = 96/187 (51%), Gaps = 17/187 (9%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRN-TGF 125
L+ + V G + A++G +G GK+TL AL G + +G+I+ G+P + +N +
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAY 82
Query: 126 VTQ-EDVLSPYLTVTETMVFTA------LLQLPNSFTEKEKIKCAEAVMTELGLSECKNS 178
V Q E+V + + E +V L+ +K + A + + + E ++
Sbjct: 83 VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRA----KKRDRQIVTAALARVDMVEFRHR 138
Query: 179 LIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGR 238
IG +SGG++KRV + + I ++ LDEP +G+D +I+S+L +L + G+
Sbjct: 139 QIGE-----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGK 193
Query: 239 TIVMTIH 245
T++++ H
Sbjct: 194 TMLVSTH 200
|
Length = 272 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 1e-12
Identities = 58/207 (28%), Positives = 99/207 (47%), Gaps = 21/207 (10%)
Query: 49 KMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRI 108
+ K F+ K I+ L ++ V G++ ++G SG GK+TL+ + +G +
Sbjct: 6 NITKVFHQGTKTIQA---LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSV 62
Query: 109 TYNGKPFSN----QMT---RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIK 161
+G+ + ++T R G + Q L TV + L+L N+ ++ K K
Sbjct: 63 IVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALP--LELDNTPKDEIKRK 120
Query: 162 CAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDST 221
E ++ +GL + +S +SGG+++RV+I + + NP +L DE TS LD
Sbjct: 121 VTE-LLALVGLGDKHDSY-----PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174
Query: 222 IAQQILSILLKLANG--GRTIVMTIHQ 246
Q IL LLK N G TI++ H+
Sbjct: 175 TTQSILE-LLKEINRRLGLTILLITHE 200
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 2e-12
Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 27/207 (13%)
Query: 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNT--------GF 125
V+ GE+L + G G G+T L AL G +G I +GKP R+ +
Sbjct: 282 VRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRI---RSPRDAIKAGIAY 338
Query: 126 VT---QEDVLSPYLTVTETMVFTALLQLPNSF---TEKEKIKCAEAVMTELGLSECKNSL 179
V + + L +++ E + +L + KE+ AE + L + K
Sbjct: 339 VPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKER-ALAERYIRRLRI---KTPS 394
Query: 180 IGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRT 239
P +SGG +++V + + + +P +L LDEPT G+D +I ++ +LA G+
Sbjct: 395 PEQP-IGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKA 453
Query: 240 IVMTIHQPSNM--LYYMFHKVLLLSEG 264
I+M S + L + ++L++ EG
Sbjct: 454 ILMI---SSELPELLGLSDRILVMREG 477
|
Length = 500 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 2e-12
Identities = 48/193 (24%), Positives = 90/193 (46%), Gaps = 27/193 (13%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNT--- 123
+K ++ V+ GE++ + G +G G++ L+ A+ G +GRI NGK + R +
Sbjct: 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKD---VLGRLSPRE 330
Query: 124 ------GFVTQE---DVLSPYLTVTETMVFTALLQLPNS---FTEKEKI-KCAEAVMTEL 170
+V ++ L L++ E +V + P S F ++ I K A ++ E
Sbjct: 331 RRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEF 390
Query: 171 GLSECKNSLIGGPLT--RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILS 228
+ P R +SGG ++++ + +E+ P LL +PT GLD + I
Sbjct: 391 DVRAP------SPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHE 444
Query: 229 ILLKLANGGRTIV 241
LL+L + G+ ++
Sbjct: 445 RLLELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (164), Expect = 2e-12
Identities = 53/193 (27%), Positives = 96/193 (49%), Gaps = 22/193 (11%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG------RINGRITYNGKP-FSNQM 119
L GI+ + E+ A++GPSGCGK+T L L R+ +I G I + G+ + ++M
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLN-RMNDDIENIKITGEIKFEGQNIYGSKM 78
Query: 120 T-----RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKI--KCAEAVMTELGL 172
+ G V Q+ P+ +V + + + + +KE I + E++
Sbjct: 79 DLVELRKEVGMVFQQPTPFPF-SVYDNVAYGLKIA---GVKDKELIDQRVEESLKQAAIW 134
Query: 173 SECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLK 232
E K++L + SGG+++R+ I + + + P ++ LDEPTS LD + +I L++
Sbjct: 135 KETKDNLDRN--AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLME 192
Query: 233 LANGGRTIVMTIH 245
L + T +M H
Sbjct: 193 LKH-QYTFIMVTH 204
|
Length = 251 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (164), Expect = 2e-12
Identities = 56/212 (26%), Positives = 99/212 (46%), Gaps = 26/212 (12%)
Query: 47 KIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRING 106
K+K +Y ++K IE GI+ + ++ A++GPSGCGK+T + L R+ + G
Sbjct: 9 KVKDLSFYYNTSKAIE------GISMDIYRNKVTAIIGPSGCGKSTFIKTLN-RISELEG 61
Query: 107 RIT------------YNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSF 154
+ Y+ + N++ R G V Q P +++ E + + +
Sbjct: 62 PVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQ 120
Query: 155 TEKEKIKCAEAVMTELGL-SECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDE 213
+ ++I E+ + L E K+ L L G+SGG+++R+ I + + I P +L +DE
Sbjct: 121 ADLDEI--VESALKGAALWQEVKDKLNKSAL--GLSGGQQQRLCIARALAIKPKVLLMDE 176
Query: 214 PTSGLDSTIAQQILSILLKLANGGRTIVMTIH 245
P S LD IA + L+ TI + H
Sbjct: 177 PCSALDP-IATMKVEELIHSLRSELTIAIVTH 207
|
Length = 259 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (164), Expect = 2e-12
Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 25/179 (13%)
Query: 81 AMLGPSGCGKTTLLTALGGRLG------RINGRITYNGKP-FSN-----QMTRNTGFVTQ 128
A++GPSGCGK+T L L R+ +I G + Y GK +SN ++ R G V Q
Sbjct: 37 ALIGPSGCGKSTFLRTLN-RMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQ 95
Query: 129 EDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS----ECKNSLIGGPL 184
+P+L ++ + P K+K K E V L S E K+ L L
Sbjct: 96 TP--NPFLM----SIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNAL 149
Query: 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMT 243
+ +SGG+++R+ I + + I P+++ +DEPTS LD +I +++ L I++T
Sbjct: 150 S--LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 2e-12
Identities = 60/220 (27%), Positives = 94/220 (42%), Gaps = 51/220 (23%)
Query: 54 FYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG------RINGR 107
FYG +E+A L ++ + ++ AM+GPSGCGK+T L + R+ R+ G
Sbjct: 48 FYG-----DEQA-LDDVSMDIPENQVTAMIGPSGCGKSTFLRCIN-RMNDLIDAARVEGE 100
Query: 108 ITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSF------------- 154
+T+ GK V DV L MVF Q PN F
Sbjct: 101 LTFRGKN-----------VYDADVDPVALRRRIGMVF----QKPNPFPKSIYDNVAYGLK 145
Query: 155 ----TEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLF 210
+ E++ E K+ L L +SGG+++R+ I + I +P ++
Sbjct: 146 IQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLD--LSGGQQQRLCIARAIAPDPEVIL 203
Query: 211 LDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNM 250
+DEP S LD +I ++ +LA T+V+ H NM
Sbjct: 204 MDEPASALDPVATSKIEDLIEELAE-EYTVVIVTH---NM 239
|
Length = 285 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 2e-12
Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 29/180 (16%)
Query: 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN-QMTRNTGFVTQEDVL 132
V GE L + G +G GKTTLL L G L +G+I +GK + +R ++ L
Sbjct: 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 133 SPYLTVTETMVFTALL------QLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTR 186
L+ E + F L Q+P S + +GL+ +++L+ R
Sbjct: 94 KADLSTLENLHFLCGLHGRRAKQMPGS------------ALAIVGLAGYEDTLV-----R 136
Query: 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDS---TIAQQILSILLKLANGGRTIVMT 243
+S G++KR+++ + L L LDEP + LD T+ +++S L+ GG +V T
Sbjct: 137 QLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLR--GGGAALVTT 194
|
Length = 214 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 2e-12
Identities = 57/197 (28%), Positives = 88/197 (44%), Gaps = 25/197 (12%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG------RINGRITYNGKPFS 116
EK L IT + + A++GPSGCGK+TLL R+ RI G I YNG+
Sbjct: 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFN-RMNDLIPGCRITGDILYNGENIM 76
Query: 117 N------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTEL 170
+ + R G V Q P ++ E + + P EK K V L
Sbjct: 77 DSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYG-----PRIHGEKNKKTLDTIVEKSL 130
Query: 171 GLS----ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQI 226
+ E K+ L L +SGG+++R+ I + + +NP ++ +DEP S LD +I
Sbjct: 131 KGAALWDEVKDRLHDSAL--SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKI 188
Query: 227 LSILLKLANGGRTIVMT 243
++ L I++T
Sbjct: 189 EDLIEDLKKEYTVIIVT 205
|
Length = 253 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 2e-12
Identities = 65/216 (30%), Positives = 106/216 (49%), Gaps = 40/216 (18%)
Query: 54 FYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL------GRINGR 107
+YGS +E+ + ++P + A +GPSGCGK+T+L L R+ R+ G
Sbjct: 13 YYGSFHAVED------VNLNIEPRSVTAFIGPSGCGKSTVLRTLN-RMHEVIPGARVEGE 65
Query: 108 ITYNGK--------PFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEK 159
+ +G+ P + + R G V Q P +++ + +V A L+L +K+
Sbjct: 66 VLLDGEDLYGPGVDPVA--VRRTIGMVFQRPNPFPTMSIRDNVV--AGLKLNGVRNKKDL 121
Query: 160 IKCAEAVMTELGL-SECKNSL--IGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTS 216
+ E + L +E K+ L GG G+SGG+++R+ I + I + P +L +DEP S
Sbjct: 122 DELVEKSLRGANLWNEVKDRLDKPGG----GLSGGQQQRLCIARAIAVEPDVLLMDEPCS 177
Query: 217 GLD--STIAQQILSILLKLANGGRTIVMTIHQPSNM 250
LD ST+A + L LK TIV+ H NM
Sbjct: 178 ALDPISTLAIEDLINELK---QDYTIVIVTH---NM 207
|
Length = 258 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 3e-12
Identities = 61/214 (28%), Positives = 105/214 (49%), Gaps = 21/214 (9%)
Query: 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI-NGRITYNGKPFS----NQMT 120
+L + +KPGE + ++GPSG GK+TL T L RL +G++ +G + +
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTL-TKLLQRLYTPQHGQVLVDGVDLAIADPAWLR 530
Query: 121 RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEK--EKIKCAEAVMTELGLSECKNS 178
R G V QE+VL + ++ L P + E K A A L + N+
Sbjct: 531 RQMGVVLQENVL-----FSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNT 585
Query: 179 LIGGPLTRGV--SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG 236
+G +G SGG+R+R++I + ++ NP +L DE TS LD I+ + ++
Sbjct: 586 EVG---EKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICR- 641
Query: 237 GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270
GRT+++ H+ S + ++++L +G SG
Sbjct: 642 GRTVIIIAHRLSTVRAC--DRIIVLEKGQIAESG 673
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 59/187 (31%), Positives = 88/187 (47%), Gaps = 26/187 (13%)
Query: 77 GEMLAMLGPSGCGKTTLLTALGGRL---GRINGRITYNGKPFSNQMTRNTGFVTQEDV-- 131
GE L ++G SG GK+ AL G L GRI G T+NG+ N + + E +
Sbjct: 42 GETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISM 101
Query: 132 --------LSPYLTVTETMVFTALLQLPNSFTEK----EKIKCAEAVMTELGLSECKNSL 179
L+PY+ V E + +L L ++ E ++ +AV + E + +
Sbjct: 102 IFQDPMTSLNPYMRVGEQL--MEVLMLHKGMSKAEAFEESVRMLDAVK----MPEARKRM 155
Query: 180 IGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRT 239
P SGG R+RV I +L P LL DEPT+ LD T+ QI+++L +L T
Sbjct: 156 KMYP--HEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNT 213
Query: 240 -IVMTIH 245
I+M H
Sbjct: 214 AIIMITH 220
|
Length = 330 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 3e-12
Identities = 61/236 (25%), Positives = 108/236 (45%), Gaps = 29/236 (12%)
Query: 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL--------GRINGRITYNGKPF 115
+AIL+ ++ ++PG + A+LG +G GK+TLL AL G L R+ G +T NG+P
Sbjct: 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPL 73
Query: 116 SN----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKE-KIKCAEAVMTEL 170
+ ++ R + Q + + E ++ L + P++ + E L
Sbjct: 74 AAIDAPRLARLRAVLPQAAQPAFAFSAREIVL---LGRYPHARRAGALTHRDGEIAWQAL 130
Query: 171 GLSECKNSLIGGPLTRGVSGGERKRVSIGQ---------EILINPSLLFLDEPTSGLDST 221
L+ +L+G +T +SGGE RV + + P L LDEPT+ LD
Sbjct: 131 ALAGA-TALVGRDVTT-LSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLA 188
Query: 222 IAQQILSILLKLANGGRTIVMTI-HQPSNMLYYMFHKVLLLSEGYPLYSGEASGAM 276
++L + +LA V+ I H P N+ ++ +L++G + G + +
Sbjct: 189 HQHRLLDTVRRLARDWNLGVLAIVHDP-NLAARHADRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 3e-12
Identities = 54/193 (27%), Positives = 91/193 (47%), Gaps = 16/193 (8%)
Query: 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL------GRINGRITYNGKPFSN-- 117
+L G+ + + A++GPSG GK+TLL RL R++G + +G+
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFN-RLIELYPEARVSGEVYLDGQDIFKMD 76
Query: 118 --QMTRNTGFVTQEDVLSPYLTVTETMVF-TALLQLPNSFTEKEKIKCAEAVMTELGLSE 174
++ R V Q P L++ E + L +L S E ++ + A+ E
Sbjct: 77 VIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQE-RVRWALEKAQLWDE 135
Query: 175 CKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLA 234
K+ L P + +SGG+++R+ I + + P +L DEPT+ LD +I S+ L+L
Sbjct: 136 VKDRL-DAPAGK-LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK 193
Query: 235 NGGRTIVMTIHQP 247
TIV+ H P
Sbjct: 194 K-DMTIVLVTHFP 205
|
Length = 250 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 6e-12
Identities = 58/212 (27%), Positives = 97/212 (45%), Gaps = 29/212 (13%)
Query: 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS----NQMTR 121
+L+ ++ + PGE+ A++GPSG GK+T++ L G++ +GKP S +
Sbjct: 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88
Query: 122 NTGFVTQEDVLS--------PY-LTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGL 172
V QE VL Y L Q ++ + ++ A TE+G
Sbjct: 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISEL--ASGYDTEVGE 146
Query: 173 SECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLK 232
G L SGG+++RV+I + ++ NP +L LDE TS LD+ QQ+ L
Sbjct: 147 K-------GSQL----SGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQV-QQALY 194
Query: 233 LANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
RT+++ H+ S + ++L+L G
Sbjct: 195 DWPERRTVLVIAHRLSTVERA--DQILVLDGG 224
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 1e-11
Identities = 65/223 (29%), Positives = 97/223 (43%), Gaps = 55/223 (24%)
Query: 54 FYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGK 113
FYG + L I+ + ++ A++GPSGCGK+T L L R+N I
Sbjct: 15 FYG------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLN----RMNDLIP---- 60
Query: 114 PFSNQMTRNTGFVT--QEDVLSPYLTVTET-----MVFTALLQLPNSFTE---------- 156
R G + E++ P++ V E MVF Q PN F +
Sbjct: 61 -----GARVEGEILLDGENIYDPHVDVVELRRRVGMVF----QKPNPFPKSIFENVAYGL 111
Query: 157 -----KEKIKCAEAVMTELGLS----ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPS 207
K+K AE V L + E K+ L L G+SGG+++R+ I + + + P
Sbjct: 112 RVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESAL--GLSGGQQQRLCIARALAVEPE 169
Query: 208 LLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNM 250
+L +DEP S LD IA Q + L+ TI++ H NM
Sbjct: 170 VLLMDEPASALDP-IATQKIEELIHELKARYTIIIVTH---NM 208
|
Length = 253 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 1e-11
Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----- 117
E L + ++ G A +G +G GK+T++ L G G + + ++
Sbjct: 19 EGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNK 78
Query: 118 ---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSF--TEKEKIKCAEAVMTELGL 172
Q+ + G V Q P + E V + P +F +++E A + +G+
Sbjct: 79 DIKQIRKKVGLVFQ----FPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGI 134
Query: 173 SECKNSLIG-GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL 231
SE SL P +SGG+ +RV+I + + P +L LDEPT+GLD ++++++
Sbjct: 135 SE---SLFEKNPFE--LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFK 189
Query: 232 KLANGGRTIVMTIH 245
KL G TIV+ H
Sbjct: 190 KLHQSGMTIVLVTH 203
|
Length = 280 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 2e-11
Identities = 49/189 (25%), Positives = 88/189 (46%), Gaps = 18/189 (9%)
Query: 68 KGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS-----NQMTRN 122
+ I+ V GE+L G G G+T L+ L G R G I NGK S + + +
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339
Query: 123 TGFVTQ---EDVLSPYLTVTETMVFTALLQLPNS------FTEKEKIKCAEAVMTELGLS 173
++T+ ++ P ++ + M + L+ F E ++ + AE L L
Sbjct: 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLAL- 398
Query: 174 ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL 233
K + +T +SGG +++V I + + P ++ DEPT G+D +I ++ +L
Sbjct: 399 --KCHSVNQNITE-LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQL 455
Query: 234 ANGGRTIVM 242
A+ G+ I+M
Sbjct: 456 ADDGKVILM 464
|
Length = 510 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 2e-11
Identities = 54/188 (28%), Positives = 82/188 (43%), Gaps = 12/188 (6%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL--GRINGRITYNGKPFSNQMTRNT- 123
L GI V+PGE + + G +G GK+TL+ L G G +G I ++G P R+T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 124 ----GFVTQEDVLSPYLTVTETMVFTALLQLPNSFTE-KEKIKCAEAVMTELGLSECKNS 178
+ QE L P L+V E + + LP A+ ++ EL L +
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 179 LIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGR 238
G GG+++ V I + + LL LDEP+S L + +L I+ L G
Sbjct: 137 RPVGDY----GGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGV 192
Query: 239 TIVMTIHQ 246
V H+
Sbjct: 193 ACVYISHK 200
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 2e-11
Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 26/220 (11%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF----SNQ 118
+ + + +T + G A++GP+GCGK+TLL L + +G + +G+ S +
Sbjct: 19 KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKE 78
Query: 119 MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNS--FT--EKEKIKCAEAVMTELGLSE 174
+ R G + Q +TV E A + P+ FT KE + M G++
Sbjct: 79 VARRIGLLAQNATTPGDITVQE---LVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITH 135
Query: 175 CKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQI--LSILLK 232
+ + +SGG+R+R I + +++ LDEPT+ LD I+ QI L +L +
Sbjct: 136 LADQSVD-----TLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD--ISHQIDLLELLSE 188
Query: 233 L-ANGGRTIVMTIHQPSNMLYYMFHKVLL-----LSEGYP 266
L G T+ +H + Y H + L +++G P
Sbjct: 189 LNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAP 228
|
Length = 265 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 2e-11
Identities = 54/216 (25%), Positives = 100/216 (46%), Gaps = 28/216 (12%)
Query: 43 DIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG 102
IV K+ K FYG+ + + + ++ E+ +GPSGCGK+T+L +L R+
Sbjct: 6 PIVMDCKLDKIFYGNFMAVRDSHV------PIRKNEITGFIGPSGCGKSTVLRSLN-RMN 58
Query: 103 ------RINGRITYNGKPFSNQ------MTRNTGFVTQEDVLSPY-LTVTETMVFTALLQ 149
R G + + G+ + + R G V Q+ +P+ +++ + + F L
Sbjct: 59 DLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQP--NPFSMSIFDNVAFGLRL- 115
Query: 150 LPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLL 209
N + + A+ E K+ L L+ +SGG+++R+ I + I P +L
Sbjct: 116 --NRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLS--LSGGQQQRLCIARAIATEPEVL 171
Query: 210 FLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIH 245
LDEP S LD +++ ++++L TI + H
Sbjct: 172 LLDEPCSALDPIATRRVEELMVELKK-DYTIALVTH 206
|
Length = 261 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (156), Expect = 2e-11
Identities = 63/245 (25%), Positives = 109/245 (44%), Gaps = 27/245 (11%)
Query: 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG 98
+KFE + Y Y N +A+ I VK G A++G +G GK+TLL L
Sbjct: 2 IKFEKVNYT-------YQPNSPFASRALFD-IDLEVKKGSYTALIGHTGSGKSTLLQHLN 53
Query: 99 GRLGRINGRI--------TYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQL 150
G L G++ + + + + + G V Q P + E V +
Sbjct: 54 GLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQ----FPESQLFEETVLKDVAFG 109
Query: 151 PNSF--TEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSL 208
P +F +++ K A + +GL+ P +SGG+ +RV+I + + P +
Sbjct: 110 PQNFGIPKEKAEKIAAEKLEMVGLA--DEFWEKSPFE--LSGGQMRRVAIAGILAMEPEV 165
Query: 209 LFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLY 268
L LDEPT+GLD +++ + + G+T+V+ H ++ Y + V LL +G+ +
Sbjct: 166 LVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADY-VYLLEKGHIIS 224
Query: 269 SGEAS 273
G S
Sbjct: 225 CGTPS 229
|
Length = 288 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 2e-11
Identities = 63/239 (26%), Positives = 114/239 (47%), Gaps = 24/239 (10%)
Query: 35 HPVTLKFEDIVYKIKMKK-GFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTL 93
TL ++ I+ + F N+ + +LKG+T + PGE++A++GPSG GK+T+
Sbjct: 466 LTGTLAPLNLEGLIEFQDVSFSYPNRP--DVPVLKGLTFTLHPGEVVALVGPSGSGKSTV 523
Query: 94 LTALGGRLGRINGRITYNGKPFSN----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQ 149
L G++ +G P + R V QE VL +V E + +
Sbjct: 524 AALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGL--- 579
Query: 150 LPNSFTEKEKI----KCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILIN 205
+ T E+I K A A + ++ +G ++ +SGG+++R++I + ++
Sbjct: 580 ---TDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQ-LSGGQKQRIAIARALVRK 635
Query: 206 PSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
P +L LDE TS LD+ +Q+L A RT+++ H+ S ++L+L +G
Sbjct: 636 PRVLILDEATSALDAEC-EQLLQESRSRA--SRTVLLIAHRLS--TVERADQILVLKKG 689
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (155), Expect = 3e-11
Identities = 55/208 (26%), Positives = 100/208 (48%), Gaps = 25/208 (12%)
Query: 48 IKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG----- 102
+ + GF G K +L ++ + +++GP+G GKTT L L R+
Sbjct: 25 VNLTLGFAG-------KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLN-RMNDKVSG 76
Query: 103 -RINGRITYNGKPFSN-----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTE 156
R +G + G+ N + R G + Q P +++ + ++ A ++
Sbjct: 77 YRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVL--AGVRAHKLVPR 133
Query: 157 KEKIKCAEAVMTELGLSEC-KNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPT 215
KE A+A +TE+GL + K+ L P +SGG+++ + + + + +NP +L LDEPT
Sbjct: 134 KEFRGVAQARLTEVGLWDAVKDRLSDSPFR--LSGGQQQLLCLARTLAVNPEVLLLDEPT 191
Query: 216 SGLDSTIAQQILSILLKLANGGRTIVMT 243
S LD T ++I + LA+ I++T
Sbjct: 192 SALDPTTTEKIEEFIRSLADRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 3e-11
Identities = 64/213 (30%), Positives = 94/213 (44%), Gaps = 43/213 (20%)
Query: 54 FYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG------RINGR 107
FYG N+ LK I + ++ A++GPSGCGK+TLL L R+ +I G+
Sbjct: 12 FYGENQA------LKSINLPIPARQVTALIGPSGCGKSTLLRCLN-RMNDLIEGVKITGK 64
Query: 108 ITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTE----------- 156
+T +G + N DV L + MVF P S E
Sbjct: 65 LTMDG----EDIYGNI------DVAD--LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGI 112
Query: 157 KEKIKCAEAVMTELG----LSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLD 212
K+K E V L E K+ L G+SGG+++R+ I + I + P ++ +D
Sbjct: 113 KDKKVLDEVVERSLRGAALWDEVKDRL--KSHAFGLSGGQQQRLCIARTIAMEPDVILMD 170
Query: 213 EPTSGLDSTIAQQILSILLKLANGGRTIVMTIH 245
EPTS LD IA + L++ TIV+ H
Sbjct: 171 EPTSALDP-IATHKIEELMEELKKNYTIVIVTH 202
|
Length = 249 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 4e-11
Identities = 49/186 (26%), Positives = 93/186 (50%), Gaps = 11/186 (5%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----Q 118
++ L I+ +++PGE +A++G SG GK+TL+ + +G+I +G ++
Sbjct: 344 DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLAS 403
Query: 119 MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTEL--GLSECK 176
+ R V+Q DV+ T+ + + Q + E+ A A + L
Sbjct: 404 LRRQVALVSQ-DVVLFNDTIANNIAYGRTEQADRAEIER---ALAAAYAQDFVDKLPLGL 459
Query: 177 NSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG 236
++ IG +SGG+R+R++I + +L + +L LDE TS LD+ + + + L +L G
Sbjct: 460 DTPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQG 518
Query: 237 GRTIVM 242
T+V+
Sbjct: 519 RTTLVI 524
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 4e-11
Identities = 53/190 (27%), Positives = 82/190 (43%), Gaps = 30/190 (15%)
Query: 76 PGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ-------------MTRN 122
PGE+L ++G SG GK+TLL L GRL +G TY + + M
Sbjct: 28 PGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTE 87
Query: 123 TGFVTQE--DVL----SPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK 176
GFV Q D L S + E ++ N E V + +
Sbjct: 88 WGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGN--IRATAQDWLEEVEIDPTRID-- 143
Query: 177 NSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLA-N 235
L R SGG ++R+ I + ++ P L+F+DEPT GLD ++ ++L +L L +
Sbjct: 144 ------DLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRD 197
Query: 236 GGRTIVMTIH 245
G +++ H
Sbjct: 198 LGLAVIIVTH 207
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 4e-11
Identities = 57/246 (23%), Positives = 110/246 (44%), Gaps = 24/246 (9%)
Query: 43 DIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGG--- 99
DI+ ++K + ++ E A+ I+ + ++ ++G SG GK+TL+T G
Sbjct: 19 DIILRVKNLYCVFDEKQENELVAL-NNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK 77
Query: 100 -RLGRINGRITYNGKPFSNQMTRNTG-------FVTQEDVLSPYLTVTETMVFTALLQLP 151
+ G I Y G +N F +S E +F ++
Sbjct: 78 SKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKD 137
Query: 152 NSF-------TEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILI 204
F + E K A+ + ++GL + + L P G+SGG+++RV+I + I
Sbjct: 138 IMFGPVALGVKKSEAKKLAKFYLNKMGLDD--SYLERSPF--GLSGGQKRRVAIAGILAI 193
Query: 205 NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
P +L DEPT+GLD +++ ++L +T+ + H ++L + +V+++ +G
Sbjct: 194 QPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVL-EVADEVIVMDKG 252
Query: 265 YPLYSG 270
L +G
Sbjct: 253 KILKTG 258
|
Length = 320 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 4e-11
Identities = 52/187 (27%), Positives = 84/187 (44%), Gaps = 16/187 (8%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTR---NT 123
L I+ + G++ A++G +G GK+TLL L G G I +G+ T
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79
Query: 124 GFVT--QEDVLSPYLTVTETMVFTALLQLPNSF---TEKEKIKCAEAVMTELGLSECKNS 178
G QE L P +TV E + L QLP+ + A + LG+ ++
Sbjct: 80 GVAIIYQELHLVPEMTVAENLY---LGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDT 136
Query: 179 LIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGR 238
PL +S G+R+ V I + + N ++ DEPTS L + +Q+ ++ +L GR
Sbjct: 137 ----PLKY-LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGR 191
Query: 239 TIVMTIH 245
I+ H
Sbjct: 192 VILYVSH 198
|
Length = 501 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 4e-11
Identities = 54/194 (27%), Positives = 101/194 (52%), Gaps = 17/194 (8%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS----NQ 118
+ L+ + +KPG+ML + GP+G GK+TLL+ + G I ++ P + +
Sbjct: 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDS 386
Query: 119 MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEK-EKIKCAEAVMTE-LGLSECK 176
V+Q +P+L ++T+ L P++ ++ E + +V + L L +
Sbjct: 387 WRSRLAVVSQ----TPFL-FSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGY 441
Query: 177 NSLIGGPLTRGV--SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLA 234
++ +G RGV SGG+++R+SI + +L+N +L LD+ S +D QIL L +
Sbjct: 442 DTEVG---ERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG 498
Query: 235 NGGRTIVMTIHQPS 248
GRT++++ H+ S
Sbjct: 499 E-GRTVIISAHRLS 511
|
Length = 569 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 5e-11
Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 24/164 (14%)
Query: 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP---FSNQMTRNTGFV-TQE 129
V+ E+++++GP+G GKTT+ L G G I G+ G V T +
Sbjct: 28 VREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQ 87
Query: 130 DV-LSPYLTVTE-----------TMVFTALLQLPNSF--TEKEKIKCAEAVMTELGLSEC 175
V L +TV E T +F+ LL+ P +F E E + A + +GL E
Sbjct: 88 HVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTP-AFRRAESEALDRAATWLERVGLLEH 146
Query: 176 KNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLD 219
N G ++ G+++R+ I + ++ P +L LDEP +GL+
Sbjct: 147 ANRQAG-----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLN 185
|
Length = 255 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 6e-11
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 20/167 (11%)
Query: 60 KIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS--- 116
+ IL I+ ++ GE + GPSGCGK+TLL + + +G + + G+ S
Sbjct: 16 LAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLK 75
Query: 117 -NQMTRNTGFVTQEDVLSPYL---TVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGL 172
+ + Q +P L TV + ++F Q+ N + + L
Sbjct: 76 PEIYRQQVSYCAQ----TPTLFGDTVYDNLIFP--WQIRNQQPDPAIFL---DDLERFAL 126
Query: 173 SECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLD 219
+ +++ + +SGGE++R+S+ + + P +L LDE TS LD
Sbjct: 127 PD---TILTKNIAE-LSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 8e-11
Identities = 58/247 (23%), Positives = 112/247 (45%), Gaps = 29/247 (11%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGK-PFSNQ-- 118
+ + IL+G++ + ++ A++GPSGCGK+T L L R+ + + G+ F NQ
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLN-RMNELESEVRVEGRVEFFNQNI 76
Query: 119 ---------MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTE 169
+ R V + L P ++V + + + + E + I E+ + +
Sbjct: 77 YERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDI--VESALKD 133
Query: 170 LGL-SECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILS 228
L E K+ + L +SGG+++R+ I + + + P +L +DEP GLD + ++ S
Sbjct: 134 ADLWDEIKHKIHKSALD--LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVES 191
Query: 229 ILLKLA-NGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNYFASIGYCPS 287
++ L T+V+ H N+ H+V LS+ + G + + G
Sbjct: 192 LIQSLRLRSELTMVIVSH---NL-----HQVSRLSDFTAFFKGNEN-RIGQLVEFGLTKK 242
Query: 288 VPTNPSD 294
+ +P D
Sbjct: 243 IFNSPHD 249
|
Length = 261 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 9e-11
Identities = 61/217 (28%), Positives = 92/217 (42%), Gaps = 43/217 (19%)
Query: 54 FYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGK 113
+YG LK I + ++ A +GPSGCGK+TLL R R+ Y
Sbjct: 22 YYGKFHA------LKNINLDIAKNQVTAFIGPSGCGKSTLL--------RTFNRM-YELY 66
Query: 114 PFSNQMTRNTGFVTQEDVLSPYLTVTET-----MVFTALLQLPNSFTEK--------EKI 160
P Q + E++L+P + MVF P S + EK+
Sbjct: 67 P--EQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKL 124
Query: 161 KCAEA------VMTELGL-SECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDE 213
AE +T+ L +E K+ L +SGG+++R+ I + I I P +L LDE
Sbjct: 125 SRAEMDERVEWALTKAALWNEVKDKLHQSGY--SLSGGQQQRLCIARGIAIRPEVLLLDE 182
Query: 214 PTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNM 250
P S LD +I ++ +L T+V+ H NM
Sbjct: 183 PCSALDPISTGRIEELITELKQ-DYTVVIVTH---NM 215
|
Length = 260 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 1e-10
Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 24/159 (15%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRN 122
++ +L ++ +KPG++L +LGP+G GK+TL+ + G + G I NGK
Sbjct: 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK-------LR 68
Query: 123 TGFVTQEDVLSPY--LTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLI 180
G+V Q+ L LTV + + + ++++ LI
Sbjct: 69 IGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGH--------------LI 114
Query: 181 GGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLD 219
P+ + +SGGE +RV + + +L P LL LDEPT G+D
Sbjct: 115 DAPMQK-LSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 1e-10
Identities = 61/226 (26%), Positives = 109/226 (48%), Gaps = 34/226 (15%)
Query: 48 IKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL-GRING 106
I +K G++ + K E + L I V G ++A++G +G GKT+L++A+ G L R +
Sbjct: 615 ISIKNGYFSWDSKAE-RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDA 673
Query: 107 RITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAV 166
+ G +V Q + TV + ++F + P E+ A+
Sbjct: 674 SVVIRGT---------VAYVPQVSWIFN-ATVRDNILFGS----PFDPERYERAIDVTAL 719
Query: 167 MTELGLSECKNSLIGGPLT----RGV--SGGERKRVSIGQEILINPSLLFLDEPTSGLDS 220
+L L L GG LT RGV SGG+++RVS+ + + N + D+P S LD+
Sbjct: 720 QHDLDL------LPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDA 773
Query: 221 TIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFH--KVLLLSEG 264
+ +Q+ +K G+T V+ +N L+++ +++L+ EG
Sbjct: 774 HVGRQVFDKCIKDELRGKTRVLV----TNQLHFLSQVDRIILVHEG 815
|
Length = 1622 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 1e-10
Identities = 51/186 (27%), Positives = 92/186 (49%), Gaps = 17/186 (9%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGK---PFSNQMTRN- 122
LKG++ + G A+LGP+G GK+TLL L G GR+ G+ + + R+
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSK 80
Query: 123 TGFVTQE---DVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSL 179
G V Q+ V S TV + + F + + E + E + + + + ++
Sbjct: 81 VGLVFQDPDDQVFS--STVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDK- 134
Query: 180 IGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRT 239
P +S G++KRV+I + ++P ++ LDEP + LD + ++ IL +L N G+T
Sbjct: 135 --PP--YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKT 190
Query: 240 IVMTIH 245
+++ H
Sbjct: 191 VIVATH 196
|
Length = 274 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 1e-10
Identities = 52/209 (24%), Positives = 96/209 (45%), Gaps = 27/209 (12%)
Query: 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG 98
L+ ++V + ++ G N+ E ++ ++ + PGE L+++G SG GK+T AL
Sbjct: 314 LQVRNLVTRFPLRSGLL--NRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALL 371
Query: 99 GRLGRINGRITYNGKPFSN-------QMTRNTGFVTQEDV--LSPYLTVTETMVFTALLQ 149
+ G I +NG+ + R+ F+ Q+ L P TV ++++ L+
Sbjct: 372 RLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIM--EPLR 429
Query: 150 LPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGP-----LTRGVSGGERKRVSIGQEILI 204
+ K ++ +GL P SGG+R+R+ I + + +
Sbjct: 430 VHGLLPGKAAAARVAWLLERVGLL---------PEHAWRYPHEFSGGQRQRICIARALAL 480
Query: 205 NPSLLFLDEPTSGLDSTIAQQILSILLKL 233
NP ++ DE S LD +I QI+++LL L
Sbjct: 481 NPKVIIADEAVSALDVSIRGQIINLLLDL 509
|
Length = 623 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 59/233 (25%), Positives = 108/233 (46%), Gaps = 53/233 (22%)
Query: 20 EDQLLEASDVFTRAKHPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEM 79
+ LL+A D+ KH Y +K +G + + + KA L G++ ++ G+
Sbjct: 2 QQPLLQAIDL---KKH----------YPVK--RGLFKPERLV--KA-LDGVSFTLERGKT 43
Query: 80 LAMLGPSGCGKTTLLTALGGRLGRI-----NGRITYNGKPFSN-------QMTRNTGFVT 127
LA++G SGCGK+TL RL + G + Y G+ + + V
Sbjct: 44 LAVVGESGCGKSTL-----ARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVF 98
Query: 128 QEDV--LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT 185
Q L+P V + + L + S + E+ + A A+M ++GL P
Sbjct: 99 QNPYGSLNPRKKVGQIL--EEPLLINTSLSAAERREKALAMMAKVGLR---------PEH 147
Query: 186 RG-----VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL 233
SGG+R+R++I + ++++P ++ DEP S LD ++ Q+L++++ L
Sbjct: 148 YDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDL 200
|
Length = 327 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 30/217 (13%)
Query: 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTG- 124
+LKGI + GE+ A+LG +G GK+TL+ + G + +G + G P + +T
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCAR-LTPAKAH 84
Query: 125 -----FVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSL 179
V QE +L P L+V E ++F LP +K+ + ++ LG
Sbjct: 85 QLGIYLVPQEPLLFPNLSVKENILF----GLPKRQASMQKM---KQLLAALGCQ------ 131
Query: 180 IGGPLTRGVSGG-----ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLA 234
L S G +R+ V I + ++ + +L LDEPT+ L +++ S + +L
Sbjct: 132 ----LDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELL 187
Query: 235 NGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271
G IV H+ + + ++ ++ +G SG+
Sbjct: 188 AQGVGIVFISHKLPE-IRQLADRISVMRDGTIALSGK 223
|
Length = 510 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 2e-10
Identities = 45/190 (23%), Positives = 92/190 (48%), Gaps = 18/190 (9%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL------GRINGRITYNGKPFSNQ-- 118
+K ++ + A++GPSGCGK+T+L ++ R+ R+ G+I + ++
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSIN-RMHDLVPSARVTGKILLDDTDIYDRGV 78
Query: 119 ----MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGL-S 173
+ R G V Q+ P +++ + ++ A +L E + E+ + + L
Sbjct: 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIVESSLKRVALWD 136
Query: 174 ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL 233
E K+ L + +SGG+++R+ I + I + P ++ +DEP S LD +I ++ +L
Sbjct: 137 EVKDRLKSNAME--LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEEL 194
Query: 234 ANGGRTIVMT 243
I++T
Sbjct: 195 KEKYTIIIVT 204
|
Length = 252 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 2e-10
Identities = 54/195 (27%), Positives = 94/195 (48%), Gaps = 26/195 (13%)
Query: 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN--GRITYNGKPFSN---- 117
K + + + G+ +A++GPSG GKT+LL AL LG + G + NG
Sbjct: 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNAL---LGFLPYQGSLKINGIELRELDPE 419
Query: 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEK-----EKIKCAEAV-MTELG 171
++ +V Q L P+ T+ + + LL P++ E+ E +E + + G
Sbjct: 420 SWRKHLSWVGQNPQL-PHGTLRDNV----LLGNPDASDEQLQQALENAWVSEFLPLLPQG 474
Query: 172 LSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL 231
L ++ IG G+S G+ +R+++ + +L LL LDEPT+ LD+ Q ++ L
Sbjct: 475 L----DTPIGDQ-AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALN 529
Query: 232 KLANGGRTIVMTIHQ 246
+ +T +M HQ
Sbjct: 530 AASR-RQTTLMVTHQ 543
|
Length = 588 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 2e-10
Identities = 54/237 (22%), Positives = 95/237 (40%), Gaps = 24/237 (10%)
Query: 46 YKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN 105
K ++K G +K+ E LK I+ + GE + ++G +G GK+TLL + G +
Sbjct: 23 LKKRLK-GLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTS 81
Query: 106 GRITYNGKPFSNQMTRNTGFVTQEDV-LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAE 164
G++ GK + + P LT E + L+ T KE + +
Sbjct: 82 GKVKVTGKVAP---------LIELGAGFDPELTGRENIYLRGLI---LGLTRKEIDEKVD 129
Query: 165 AVM--TELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTI 222
++ ELG I P+ + S G R++ + P +L LDE + D+
Sbjct: 130 EIIEFAELG------DFIDQPV-KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAF 182
Query: 223 AQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNYF 279
++ L L +L +TIV+ H + Y + + L G G + +
Sbjct: 183 QEKCLERLNELVEKNKTIVLVSHDLGAIKQYC-DRAIWLEHGQIRMEGSPEEVIPAY 238
|
Length = 249 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 3e-10
Identities = 54/199 (27%), Positives = 86/199 (43%), Gaps = 32/199 (16%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFV 126
LK I MV ++ A++GPSGCGK+T L R+ + Y G+ +
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFN-RMHDLYPGNHYEGEIILHP-------- 82
Query: 127 TQEDVLSPYLTVTET-MVFTALLQLPNSFTEK--EKI-----------------KCAEAV 166
++LSP + E M + + Q PN F + E + + A+
Sbjct: 83 DNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENAL 142
Query: 167 MTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQI 226
E K+ L G L +SGG+++R+ I + + +P +L DEPTS LD I
Sbjct: 143 RNAALWDEVKDRL--GDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASI 200
Query: 227 LSILLKLANGGRTIVMTIH 245
++ L N TI++ H
Sbjct: 201 EELISDLKN-KVTILIVTH 218
|
Length = 265 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 3e-10
Identities = 45/185 (24%), Positives = 84/185 (45%), Gaps = 30/185 (16%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFV 126
L GIT + G ++A++G GCGK++LL+AL + ++ G + G + +V
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG---------SVAYV 704
Query: 127 TQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT- 185
Q+ + ++ E ++F L + + V+ L L G T
Sbjct: 705 PQQAWIQN-DSLRENILFGKALN-EKYY---------QQVLEACALLPDLEILPSGDRTE 753
Query: 186 ---RGV--SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLK----LANG 236
+GV SGG+++RVS+ + + N + D+P S +D+ + + I ++ L N
Sbjct: 754 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNK 813
Query: 237 GRTIV 241
R +V
Sbjct: 814 TRILV 818
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 3e-10
Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 22/200 (11%)
Query: 46 YKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN 105
+ IK K ++ K KA+ G+T + GE L ++G SGCGK+T A+ G + +
Sbjct: 18 FDIKDGKQWFWQPPK-TLKAV-DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATD 75
Query: 106 GRITYNGKPFSNQMTRNTGFVTQEDV----------LSPYLTVTETMVFTALLQLPNSFT 155
G + + GK M + + D+ L+P +T+ E + P
Sbjct: 76 GEVAWLGKDLL-GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSR 134
Query: 156 E--KEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDE 213
+ K+++K A+M ++GL +LI SGG+ +R+ I + +++ P L+ DE
Sbjct: 135 QEVKDRVK---AMMLKVGLLP---NLIN-RYPHEFSGGQCQRIGIARALILEPKLIICDE 187
Query: 214 PTSGLDSTIAQQILSILLKL 233
P S LD +I Q++++L +L
Sbjct: 188 PVSALDVSIQAQVVNLLQQL 207
|
Length = 331 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 3e-10
Identities = 60/225 (26%), Positives = 103/225 (45%), Gaps = 39/225 (17%)
Query: 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG 98
+ F+ + ++ + K F E+ L + + G +A++G +G GK+TLL L
Sbjct: 3 ITFQKVEHRYQYKTPF--------ERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLN 54
Query: 99 GRLGRINGRITYNGKPFSNQMTRNT---------GFVTQ--EDVLSPYLTVTETMVFTAL 147
G L +G +T + + +N G V Q E L TV + + F
Sbjct: 55 GLLQPTSGTVTIGERVITAG-KKNKKLKPLRKKVGIVFQFPEHQLFEE-TVEKDICFG-- 110
Query: 148 LQLPNSF--TEKEKIKCAEAVMTELGLSECKNSLIGGPLTRG---VSGGERKRVSIGQEI 202
P +F +E++ + A ++ +GL E L L R +SGG+ +RV+I +
Sbjct: 111 ---PMNFGVSEEDAKQKAREMIELVGLPE---EL----LARSPFELSGGQMRRVAIAGVL 160
Query: 203 LINPSLLFLDEPTSGLDSTIAQQILSILLKL-ANGGRTIVMTIHQ 246
+ P +L LDEPT+GLD ++++ + KL G T V+ H
Sbjct: 161 AMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHS 205
|
Length = 290 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 3e-10
Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 11/203 (5%)
Query: 51 KKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITY 110
K F+ EK L G++ + G+ + ++G +G GK+TLL A+ G L +G+I
Sbjct: 8 TKTFF--KGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILI 65
Query: 111 NGKPFSNQMTRNTGF----VTQ--EDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAE 164
+G + + V Q +P LT+ E + + +
Sbjct: 66 DGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRS 125
Query: 165 AVMTEL-GLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIA 223
+ L L + + + +SGG+R+ +S+ L P +L LDE T+ LD A
Sbjct: 126 SFRERLARLGLGLENRLSDRIGL-LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTA 184
Query: 224 QQILSILLKL-ANGGRTIVMTIH 245
+ ++ + K+ T +M H
Sbjct: 185 EFVMELTAKIVEEHKLTTLMVTH 207
|
Length = 263 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 4e-10
Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 17/181 (9%)
Query: 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNG---KPFSNQMTRNT-----GF 125
++ GE+ ++G SG GK+T++ L + G++ +G S+ R
Sbjct: 51 IEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAM 110
Query: 126 VTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT 185
V Q L P++TV + F ++L E+ + K +A + ++GL +N P
Sbjct: 111 VFQSFALMPHMTVLDNTAFG--MELAGINAEERREKALDA-LRQVGL---ENYAHSYP-- 162
Query: 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL-ANGGRTIVMTI 244
+SGG R+RV + + + INP +L +DE S LD I ++ L+KL A RTIV
Sbjct: 163 DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFIS 222
Query: 245 H 245
H
Sbjct: 223 H 223
|
Length = 400 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 4e-10
Identities = 43/152 (28%), Positives = 79/152 (51%), Gaps = 16/152 (10%)
Query: 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMT--RNTGFVTQEDV 131
+K G M+ +LGPSGCGKTT+L + G G+I +G+ +++ R+ V Q
Sbjct: 29 IKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYA 88
Query: 132 LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGV--- 188
L P++++ E + + + K+++K A ++ G + R V
Sbjct: 89 LFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFED-----------RYVDQI 137
Query: 189 SGGERKRVSIGQEILINPSLLFLDEPTSGLDS 220
SGG+++RV++ + +++ P +L DEP S LD+
Sbjct: 138 SGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
|
Length = 351 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 4e-10
Identities = 53/185 (28%), Positives = 82/185 (44%), Gaps = 51/185 (27%)
Query: 68 KGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMT------- 120
+GIT A+ G SG GKT+L+ A+ G GRI NG+ +
Sbjct: 24 QGIT---------AIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPE 74
Query: 121 -RNTGFVTQEDVLSPYLTV--------TETMV--FTALLQLPNSFTEKEKIKCAEAVMTE 169
R G+V Q+ L P+ V ++MV F ++ L
Sbjct: 75 KRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVAL------------------- 115
Query: 170 LGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSI 229
LG+ + P + +SGGE++RV+IG+ +L P LL +DEP + LD +++L
Sbjct: 116 LGIEPLLDRY---PGS--LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPY 170
Query: 230 LLKLA 234
L +LA
Sbjct: 171 LERLA 175
|
Length = 352 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 4e-10
Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 32/170 (18%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS----NQMTRN 122
++ ++ KPG+ +A++GP+G GK+TL+ L +GRI +G + RN
Sbjct: 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRN 410
Query: 123 TGFVTQEDVL------------SPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTEL 170
V Q+ L P T E Q + F E+ K + V+ E
Sbjct: 411 IAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQ-AHDFIER-KPDGYDTVVGER 468
Query: 171 GLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDS 220
G R +SGGER+R++I + +L +P +L LDE TS LD
Sbjct: 469 G--------------RQLSGGERQRLAIARALLKDPPILILDEATSALDV 504
|
Length = 588 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 4e-10
Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 22/173 (12%)
Query: 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----QMTR 121
IL ++ ++PGE +A++GPSG GK+TLL L G +G + Y+G+ + + R
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRR 527
Query: 122 NTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAV--MTELGL----SEC 175
G V Q L ++ E + A L L ++ AE + M +G+ SE
Sbjct: 528 QLGVVLQNGRLMSG-SIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMP-MGMHTVISE- 584
Query: 176 KNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILS 228
GG +SGG+R+R+ I + ++ P +L DE TS LD+ Q I+S
Sbjct: 585 -----GG---GTLSGGQRQRLLIARALVRKPRILLFDEATSALDN-RTQAIVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 5e-10
Identities = 48/195 (24%), Positives = 93/195 (47%), Gaps = 19/195 (9%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG------RINGRITYNGKPFS 116
EK LK ++ + + A++GPSGCGK+T + L R+ RI G+++ G+
Sbjct: 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLN-RMNDLIKNCRIEGKVSIEGEDIY 82
Query: 117 N------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTEL 170
++ +N G V Q+ P +++ + + + + N +K+ E +
Sbjct: 83 EPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGAN---KKDLDGVVENALRSA 138
Query: 171 GLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSIL 230
L + + + P +SGG+++R+ I + + + P ++ DEPTS LD +I ++
Sbjct: 139 ALWDETSDRLKSP-ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLI 197
Query: 231 LKLANGGRTIVMTIH 245
+ L TIV+ H
Sbjct: 198 MNLKK-DYTIVIVTH 211
|
Length = 258 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 6e-10
Identities = 54/200 (27%), Positives = 92/200 (46%), Gaps = 31/200 (15%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL------GRINGRITYNGKPFS 116
EK + I+ ++ + A++GPSGCGK+T L ++ R+ R G I Y G
Sbjct: 33 EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSIN-RMNDLIPSARSEGEILYEGLNIL 91
Query: 117 NQ------MTRNTGFVTQEDVLSP---YLTVTETMVFTALLQLPNSFTEKEKIKCAEAV- 166
+ + R G V Q+ P Y +T + + E+ K E V
Sbjct: 92 DSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAG---------ERRKSVLDEIVE 142
Query: 167 --MTELGL-SECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIA 223
+T+ L E K+ L L+ +SGG+++R+ I + + + P++L LDEP S LD
Sbjct: 143 ESLTKAALWDEVKDRLHSSALS--LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISN 200
Query: 224 QQILSILLKLANGGRTIVMT 243
+I ++ +L I++T
Sbjct: 201 AKIEELITELKEEYSIIIVT 220
|
Length = 268 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 7e-10
Identities = 58/246 (23%), Positives = 117/246 (47%), Gaps = 42/246 (17%)
Query: 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTA 96
+T++F+++ Y Y E +AI + + G+ A++G +G GK+TL+
Sbjct: 1 MTIRFDNVSY-------TYQKGTPYEHQAI-HDVNTEFEQGKYYAIVGQTGSGKSTLIQN 52
Query: 97 LGGRLGRINGRITYNGKPFSN--------QMTRNTGFVTQ-------EDVLSPYLTVTET 141
+ L G +T + ++ + + G V Q ED TV
Sbjct: 53 INALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFED------TVERE 106
Query: 142 MVFTALLQLPNSF-TEKEKIKC-AEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIG 199
++F P +F +++K A ++ +LG S ++ + P +SGG+ ++++I
Sbjct: 107 IIFG-----PKNFKMNLDEVKNYAHRLLMDLGFS--RDVMSQSPFQ--MSGGQMRKIAIV 157
Query: 200 QEILINPSLLFLDEPTSGLDSTIAQQILSILLKLA-NGGRTIVMTIHQPSNMLYYMFHKV 258
+ +NP ++ LDEPT+GLD +Q++ +L L + +TI++ H + + Y +V
Sbjct: 158 SILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYA-DEV 216
Query: 259 LLLSEG 264
+++ EG
Sbjct: 217 IVMKEG 222
|
Length = 286 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 8e-10
Identities = 52/186 (27%), Positives = 93/186 (50%), Gaps = 24/186 (12%)
Query: 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----QMTR-NTGFVTQ 128
V PGE+ ++GP+G GKTT++ + G+ G + + G + Q+ R G Q
Sbjct: 25 VDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQ 84
Query: 129 EDVLSPYLTVTETM---------VFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSL 179
+ + LTV E + VF +L ++ EK++I E V+ +GL++ + L
Sbjct: 85 KPTVFENLTVFENLELALPRDKSVFASLFFRLSA-EEKDRI---EEVLETIGLADEADRL 140
Query: 180 IGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRT 239
G +S G+++ + IG ++ +P LL LDEP +G+ ++ +L LA G +
Sbjct: 141 AGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLA-GKHS 194
Query: 240 IVMTIH 245
+V+ H
Sbjct: 195 VVVVEH 200
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 9e-10
Identities = 59/218 (27%), Positives = 94/218 (43%), Gaps = 51/218 (23%)
Query: 54 FYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG------RINGR 107
+YGS + IL I + E+ A +GPSGCGK+T L R+ ++ G
Sbjct: 14 WYGSKQ------ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFN-RMNDFVPNCKVKGE 66
Query: 108 ITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTE----------- 156
+ +G + + +T V L MVF Q PN F +
Sbjct: 67 LDIDG---IDVYSVDTNVV--------LLRAKVGMVF----QKPNPFPKSIYDNVAYGPK 111
Query: 157 -----KEKIKCAEAV---MTELGL-SECKNSLIGGPLTRGVSGGERKRVSIGQEILINPS 207
K K K E V +T +GL E + L +SGG+++R+ I + I + P+
Sbjct: 112 LHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFE--LSGGQQQRLCIARAIAVKPT 169
Query: 208 LLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIH 245
+L +DEP S LD +A ++ L++ TI++ H
Sbjct: 170 MLLMDEPCSALDP-VATNVIENLIQELKKNFTIIVVTH 206
|
Length = 251 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 27/191 (14%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKT-TLLTALGGRL------GRINGRITYNGKP 114
+ ++ ++ ++ GE LA++G SG GK+ T L+ L RL +G I ++G+
Sbjct: 20 TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSIL--RLLPSPPVVYPSGDIRFHGES 77
Query: 115 F---SNQMTR-----NTGFVTQEDVLS--PYLTVTETMVFTALLQ--LPNSFTEKEKIKC 162
S Q R + QE ++S P T+ + + L + E + C
Sbjct: 78 LLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNC 137
Query: 163 AEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTI 222
+ V G+ + L P +SGGER+RV I +L P LL DEPT+ LD ++
Sbjct: 138 LDRV----GIRQAAKRLTDYP--HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSV 191
Query: 223 AQQILSILLKL 233
QIL +L +L
Sbjct: 192 QAQILQLLREL 202
|
Length = 529 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 57/206 (27%), Positives = 98/206 (47%), Gaps = 24/206 (11%)
Query: 74 VKPGEMLAMLGPSGCGKTTLLTAL-GGRLGRINGRITYNGKPFS----NQMTRNTGFVTQ 128
++ GE+L + G G G+T L+ AL G G+ G + NGKP Q R +
Sbjct: 283 LRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVP 342
Query: 129 EDV----LSPYLTVTETMVFTALLQLPNSFTEKEKI------KCAEAVMTELGLSECKNS 178
ED + P L V + + + L SF K +I + + + L +
Sbjct: 343 EDRKRHGIVPILGVGKNITLSVL----KSFCFKMRIDAAAELQIIGSAIQRLKVKTASPF 398
Query: 179 LIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGR 238
L P+ R +SGG +++ + + +L NP +L LDEPT G+D +I ++ +LA G
Sbjct: 399 L---PIGR-LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGV 454
Query: 239 TIVMTIHQPSNMLYYMFHKVLLLSEG 264
I++ + + +L + +VL++ EG
Sbjct: 455 AIIVVSSELAEVL-GLSDRVLVIGEG 479
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 58/217 (26%), Positives = 103/217 (47%), Gaps = 24/217 (11%)
Query: 74 VKPGEMLAMLGPSGCGKTT-------LLTALGGR-------LGRINGRITYNGKPFSNQM 119
++ GE LA++G SG GK+ LL GG L R + ++ + + QM
Sbjct: 39 LQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQM 98
Query: 120 TRNTG----FVTQEDV--LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS 173
G + QE + L+P TV E + + ++L + +E + A+ ++ ++ +
Sbjct: 99 RHVRGADMAMIFQEPMTSLNPVFTVGEQIAES--IRLHQGASREEAMVEAKRMLDQVRIP 156
Query: 174 ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL 233
E + L P +SGG R+RV I + P++L DEPT+ LD TI QIL ++ L
Sbjct: 157 EAQTILSRYP--HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVL 214
Query: 234 ANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270
V+ I ++ + +VL++ +G + +G
Sbjct: 215 QKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETG 251
|
Length = 623 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 1e-09
Identities = 64/225 (28%), Positives = 104/225 (46%), Gaps = 32/225 (14%)
Query: 57 SNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116
SN + +LK I ++ GEMLA+ G +G GKT+LL + G L G+I ++G+
Sbjct: 43 SNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR--- 99
Query: 117 NQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK 176
F +Q + P T+ E ++F + + K +K + E
Sbjct: 100 ------ISFSSQFSWIMPG-TIKENIIFGVSY---DEYRYKSVVKACQLEEDITKFPEKD 149
Query: 177 NSLIG-GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQIL-SILLKL- 233
N+++G G +T +SGG+R R+S+ + + + L LD P LD ++I S + KL
Sbjct: 150 NTVLGEGGIT--LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM 207
Query: 234 ANGGRTIVMTIHQPSNMLYYMFH-----KVLLLSEGYPLYSGEAS 273
AN R +V + M H K+L+L EG + G S
Sbjct: 208 ANKTRILVTS---------KMEHLKKADKILILHEGSSYFYGTFS 243
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 1e-09
Identities = 63/229 (27%), Positives = 105/229 (45%), Gaps = 32/229 (13%)
Query: 53 GFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNG 112
G + SN + +LK I+ ++ G++LA+ G +G GK++LL + G L G+I ++G
Sbjct: 428 GLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG 487
Query: 113 K-PFSNQMTRNTGFVTQEDVL--SPYLTVTETMVFTALLQLPNS---FTEKEKIKCAEAV 166
+ FS Q + +++++ Y T V A QL F EK+K E
Sbjct: 488 RISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKA-CQLEEDIALFPEKDKTVLGEGG 546
Query: 167 MTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQI 226
+T +SGG+R R+S+ + + + L LD P + LD ++I
Sbjct: 547 IT-------------------LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEI 587
Query: 227 L-SILLKLANGGRTIVMTIHQPSNMLYYM-FHKVLLLSEGYPLYSGEAS 273
S L KL + I++T S + + K+LLL EG + G S
Sbjct: 588 FESCLCKLMSNKTRILVT----SKLEHLKKADKILLLHEGVCYFYGTFS 632
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 1e-09
Identities = 65/239 (27%), Positives = 112/239 (46%), Gaps = 29/239 (12%)
Query: 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTA 96
+++KFE++ Y Y +E+K L I+ ++ G +A++G +G GK+TL+
Sbjct: 1 MSIKFENVDY-------IYSPGTPMEKKG-LDNISFELEEGSFVALVGHTGSGKSTLMQH 52
Query: 97 LGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDV---LSPYLTVTETMVF--TALLQL- 150
L +G IT G +T TG + + +S E +F T L +
Sbjct: 53 FNALLKPSSGTITIAGY----HITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVE 108
Query: 151 --PNSF--TEKEKIKCAEAVMTELGLSECKNSLIG-GPLTRGVSGGERKRVSIGQEILIN 205
P +F +E E + A + ++GLSE LI P +SGG+ +RV+I +
Sbjct: 109 FGPKNFGFSEDEAKEKALKWLKKVGLSE---DLISKSPFE--LSGGQMRRVAIAGVMAYE 163
Query: 206 PSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
P +L LDEP +GLD ++++ + G T+++ H ++ Y VL+L G
Sbjct: 164 PEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYA-DDVLVLEHG 221
|
Length = 287 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (143), Expect = 1e-09
Identities = 66/238 (27%), Positives = 105/238 (44%), Gaps = 31/238 (13%)
Query: 25 EASDVFTRAKHPVTLKFEDI----VYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEML 80
E + K V L ED V++I+ F+ N+ K +L + +K ++
Sbjct: 56 ELKQFLNKKKTQVDLLKEDFNHANVFEIR-NFNFWYMNRT---KHVLHDLNLDIKRNKVT 111
Query: 81 AMLGPSGCGKTTLLTALG---------GRLGRIN--GRITYNGKPFSNQMTRNTGFVTQE 129
A +GPSGCGK+T L L G I G T + K S ++ G V Q+
Sbjct: 112 AFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQK 171
Query: 130 DVLSPYLTVTETMVFTALLQLP-NSFTEKEKI--KCAEAVMTELGL-SECKNSLIGGPLT 185
+P+ E +F + P N+ KI K E + L E K+ L
Sbjct: 172 P--TPF----EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDL--DKAG 223
Query: 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMT 243
+SGG+++R+ I + I + P +L +DEPTS LD +I ++L+L I++T
Sbjct: 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVT 281
|
Length = 329 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 1e-09
Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 23/182 (12%)
Query: 76 PGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF----SNQMTRNTGFVTQEDV 131
G++ ++G +G GK+TLL LG G I + +P S R ++ Q+
Sbjct: 36 AGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLP 95
Query: 132 LSPYLTVTETMVFTALLQLP-----NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTR 186
+ +TV E A+ + P F ++ K EA+ + +GL + L+
Sbjct: 96 AAEGMTVRE---LVAIGRYPWHGALGRFGAADREKVEEAI-SLVGLKPLAHRLVDS---- 147
Query: 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQI--LSILLKLANG-GRTIVMT 243
+SGGER+R I + + L LDEPTS LD IA Q+ L+++ +L+ G T++
Sbjct: 148 -LSGGERQRAWIAMLVAQDSRCLLLDEPTSALD--IAHQVDVLALVHRLSQERGLTVIAV 204
Query: 244 IH 245
+H
Sbjct: 205 LH 206
|
Length = 265 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 1e-09
Identities = 51/181 (28%), Positives = 85/181 (46%), Gaps = 22/181 (12%)
Query: 78 EMLAMLGPSGCGKTTLLTAL--------GGRL-GRIN--GRITYNGKPFSNQMTRNTGFV 126
+++A +GPSGCGK+TLL G ++ GR+ R Y+ + S ++ R G V
Sbjct: 47 KIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMV 106
Query: 127 TQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTR 186
Q P ++ E + F P + K + E V L + + +
Sbjct: 107 FQRPNPFPK-SIYENIAFA-----PRANGYKGNLD--ELVEDSLRRAAIWEEVKDKLKEK 158
Query: 187 G--VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTI 244
G +SGG+++R+ I + I + P +L +DEP S LD +Q+ + L+L TI+M
Sbjct: 159 GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVT 217
Query: 245 H 245
H
Sbjct: 218 H 218
|
Length = 274 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 1e-09
Identities = 64/235 (27%), Positives = 102/235 (43%), Gaps = 67/235 (28%)
Query: 54 FYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGK 113
+YG ++ A LKG++ + + A++GPSGCGK+T L L R+N RI
Sbjct: 54 YYG-----DDHA-LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLN----RMNDRI----- 98
Query: 114 PFSNQMTRNTGFVT--QEDVLSPYLTVTET-----MVFTALLQLPNSFTE--KEKI---- 160
+ R G V +D+ + + E MVF Q PN F + +E I
Sbjct: 99 ----KAARIDGSVELDGQDIYQDGVNLVELRKRVGMVF----QSPNPFPKSIRENISYGP 150
Query: 161 -------------------KCAEAVMTELGL------SECKNSLIGGPLTRGVSGGERKR 195
K AE + E L E + L L G+SGG+++R
Sbjct: 151 RKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNAL--GLSGGQQQR 208
Query: 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNM 250
+ I + + ++P ++ +DEP S LD +I ++ +LA T+V+ H NM
Sbjct: 209 LCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTH---NM 259
|
Length = 305 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (140), Expect = 2e-09
Identities = 61/223 (27%), Positives = 98/223 (43%), Gaps = 46/223 (20%)
Query: 47 KIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRING 106
KIK++ G N + +LK I ++ A++GPSGCGK+TLL AL R+N
Sbjct: 4 KIKIR----GVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALN----RMND 55
Query: 107 RITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTET-----MVFTALLQLPNSF------- 154
+ S + E++ SP L V MVF Q PN F
Sbjct: 56 IV-------SGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVF----QQPNPFPKSIFDN 104
Query: 155 ----------TEKEKI-KCAEAVMTELGL-SECKNSLIGGPLTRGVSGGERKRVSIGQEI 202
T + ++ + E + + L E K++L L +SGG+++R+ I + +
Sbjct: 105 VAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGL--ALSGGQQQRLCIARVL 162
Query: 203 LINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIH 245
I P ++ +DEP S LD +I ++ +L TI + H
Sbjct: 163 AIEPEVILMDEPCSALDPVSTMRIEELMQELKQ-NYTIAIVTH 204
|
Length = 251 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 2e-09
Identities = 61/226 (26%), Positives = 101/226 (44%), Gaps = 37/226 (16%)
Query: 42 EDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL 101
+ +V+ + +YG + LK I + E+ A++GPSGCGK+T + L +
Sbjct: 21 KKVVFDTQNLNLWYGEDHA------LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMV 74
Query: 102 G-----RINGRITYNG-----KPFSNQMTR-NTGFVTQEDVLSPYLTVTETMVFTALLQL 150
+ G+I Y K +S + R N G V Q+ +P+ ++ +
Sbjct: 75 ELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKP--NPF----PKSIYDNVTYG 128
Query: 151 PNSFTEKEKIKCAEAVMTELG----LSECKNSLIGGPLTRGVSGGERKRVSIGQEILINP 206
P K+K E V L E K+ L G+SGG+++R+ I + + I P
Sbjct: 129 PKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDN--AYGLSGGQQQRLCIARCLAIEP 186
Query: 207 SLLFLDEPTSGLD--STIAQQILSILLKLANGGRTIVMTIHQPSNM 250
++ +DEPTS LD ST+ + L LK +I++ H NM
Sbjct: 187 DVILMDEPTSALDPISTLKVEELVQELK---KDYSIIIVTH---NM 226
|
Length = 271 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-09
Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 27/191 (14%)
Query: 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLG------RINGRITYNGKPFSN------QMTR 121
+ G++ A++GPSGCGK+T+L +L R+ + GR+ ++G + ++ R
Sbjct: 36 IPRGKVTALIGPSGCGKSTVLRSLN-RMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRR 94
Query: 122 NTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSL-- 179
G V Q+ P ++ E + F A + N +T ++ ECK+ L
Sbjct: 95 RIGMVFQQPNPFPK-SIYENIAFGARI---NGYTGDMDELVERSLRKAAVWDECKDKLNE 150
Query: 180 IGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRT 239
G L SGG+++R+ I + I I P ++ +DEP S LD +I + +L T
Sbjct: 151 SGYSL----SGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFT 205
Query: 240 IVMTIHQPSNM 250
IV+ H NM
Sbjct: 206 IVIVTH---NM 213
|
Length = 269 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 2e-09
Identities = 62/228 (27%), Positives = 100/228 (43%), Gaps = 65/228 (28%)
Query: 54 FYG---SNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN----- 105
+YG + KK+ + K +T A++GPSGCGK+T L A+ R+N
Sbjct: 48 YYGEFEAVKKVNADILSKYVT---------AIIGPSGCGKSTFLRAIN----RMNDLIPS 94
Query: 106 ----GRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTE----- 156
G + ++G+ + T ++VL L MVF Q PN F +
Sbjct: 95 CHTTGALMFDGEDIYGKFT--------DEVL---LRKKIGMVF----QKPNPFPKSIFDN 139
Query: 157 ----------KEKIKCAEAVMTELGLS----ECKNSLIGGPLTRGVSGGERKRVSIGQEI 202
+K + E V L + E + L L G+SGG+++R+ + + +
Sbjct: 140 IAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNAL--GLSGGQQQRLCVARTL 197
Query: 203 LINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNM 250
+ P +L LDEPTS LD +I ++ +L G TI++ H NM
Sbjct: 198 AVEPEILLLDEPTSALDPKATAKIEDLIQEL-RGSYTIMIVTH---NM 241
|
Length = 286 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 3e-09
Identities = 53/221 (23%), Positives = 95/221 (42%), Gaps = 17/221 (7%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRN---- 122
LK + V PGE+ A+LG +G GK+TL+ L G G IT N + N++
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINY-NKLDHKLAAQ 79
Query: 123 --TGFVTQEDVLSPYLTVTETMVFTALLQLP----NSFTEKEKIKCAEAVMTELGLSECK 176
G + QE + LTV E + L N +E A ++ +GL
Sbjct: 80 LGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL 139
Query: 177 NSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG 236
+ + +S ++ + I + ++++ ++ +DEPTS L + + I+ +L
Sbjct: 140 DEKVA-----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE 194
Query: 237 GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMN 277
G IV H+ + + + ++ +G + SG S N
Sbjct: 195 GTAIVYISHK-LAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234
|
Length = 510 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 3e-09
Identities = 53/203 (26%), Positives = 93/203 (45%), Gaps = 37/203 (18%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP---FSNQM 119
E +++ + ++PG+ +A++G SG GK+T+ + G +G I ++G P ++
Sbjct: 491 EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREV 550
Query: 120 TRNT-GFVTQEDVLSPYLTVTE-------TMVFTALLQLPNSFTEKEKIKCAEAVMTELG 171
N+ V Q+ L TV + T+ L++ C +A + ++
Sbjct: 551 LANSVAMVDQDIFLFEG-TVRDNLTLWDPTIPDADLVR-----------ACKDAAIHDVI 598
Query: 172 LSECKNSLIGG---PLTRG---VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQ 225
S GG L G +SGG+R+R+ I + ++ NPS+L LDE TS LD +
Sbjct: 599 TS-----RPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKI 653
Query: 226 ILSILLKLANGGRTIVMTIHQPS 248
I L G T ++ H+ S
Sbjct: 654 IDD---NLRRRGCTCIIVAHRLS 673
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 3e-09
Identities = 50/194 (25%), Positives = 89/194 (45%), Gaps = 25/194 (12%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNG------KPFSNQMT 120
L ++ V PGE+ ++GP+G GKTTL+ + G+ G + ++G P
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 121 RNTGFVTQEDVLSPYLTVTETM---------VFTALLQLPNSFTEKEKIKCAEAVMTELG 171
G Q+ + LTV E + VF A L E+ +I + ++ +G
Sbjct: 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVF-ASLFARLRAEERRRI---DELLATIG 136
Query: 172 LSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL 231
L + ++ L +S G+++ + IG + +P LL LDEP +G+ ++ +L
Sbjct: 137 LGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLK 191
Query: 232 KLANGGRTIVMTIH 245
LA G +I++ H
Sbjct: 192 SLA-GKHSILVVEH 204
|
Length = 249 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 5e-09
Identities = 55/186 (29%), Positives = 83/186 (44%), Gaps = 40/186 (21%)
Query: 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRI--TYNGKPFSNQMTR 121
K ILK I+ PG + +LG +G GK+TLL RI + +NG+
Sbjct: 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLL--------RIMAGVDKEFNGEARP-APGI 68
Query: 122 NTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKI--KCAE------AVMTELG-L 172
G++ QE L P TV E V + ++ ++ +I K AE A++ E L
Sbjct: 69 KVGYLPQEPQLDPTKTVREN-VEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAEL 127
Query: 173 SECKNSLIGGPLTRGV-------------------SGGERKRVSIGQEILINPSLLFLDE 213
E ++ L R + SGGER+RV++ + +L P +L LDE
Sbjct: 128 QEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDE 187
Query: 214 PTSGLD 219
PT+ LD
Sbjct: 188 PTNHLD 193
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 6e-09
Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 19/192 (9%)
Query: 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITY----------NGKPF 115
+L+ ++ V GE + + GPSG GK+TLL +L G+I +P
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 116 SNQMTRNT--GFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS 173
R T G+V+Q + P ++ + + L + + K A ++T L L
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAK---AADLLTRLNLP 142
Query: 174 ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL 233
E SL P T SGGE++RV+I + +++ +L LDEPT+ LD+T ++ ++ +
Sbjct: 143 ERLWSL--APAT--FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA 198
Query: 234 ANGGRTIVMTIH 245
G +V H
Sbjct: 199 KARGAALVGIFH 210
|
Length = 235 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 8e-09
Identities = 53/193 (27%), Positives = 87/193 (45%), Gaps = 25/193 (12%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ---- 118
LK ++ V GE +A++G +G GK+TL L G L G IT G S +
Sbjct: 19 ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWD 78
Query: 119 MTRNTGFVTQE-DVLSPYLTVTETMVFTALLQLPNSFTEKEKI--KCAEAV----MTELG 171
+ R G V Q D TV + + F L N +E++ + +A+ M +
Sbjct: 79 VRRQVGMVFQNPDNQFVGATVQDDVAFG----LENIGVPREEMVERVDQALRQVGMEDFL 134
Query: 172 LSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL 231
E + L SGG+++RV+I + + P ++ LDE TS LD +++L +
Sbjct: 135 NRE-PHRL---------SGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVR 184
Query: 232 KLANGGRTIVMTI 244
+L V++I
Sbjct: 185 QLKEQKGITVLSI 197
|
Length = 279 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 8e-09
Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 22/181 (12%)
Query: 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMT---RNTGFVTQED 130
+ GE++ + GP+G GKT+LL L G G + + G+P Q ++ ++ +
Sbjct: 24 LNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQP 83
Query: 131 VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTEL---GLSECKNSLIGGPLTRG 187
+ LT E + F L P EA+ L GL+ ++ + R
Sbjct: 84 GIKTELTALENLRFYQRLHGPGD---------DEALWEALAQVGLAGFEDVPV-----RQ 129
Query: 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLK-LANGGRTIVMTIHQ 246
+S G+++RV++ + L L LDEP + +D ++ ++L + GG +++T HQ
Sbjct: 130 LSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGG-MVILTTHQ 188
Query: 247 P 247
Sbjct: 189 D 189
|
Length = 204 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 8e-09
Identities = 66/220 (30%), Positives = 100/220 (45%), Gaps = 53/220 (24%)
Query: 52 KGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN------ 105
K F + I L ++ + GE+ ++G SG GK+TL+ R IN
Sbjct: 9 KVFPQGGRTIHA---LNNVSLHIPAGEIFGVIGASGAGKSTLI-----RC--INLLERPT 58
Query: 106 -GRITYNGKPFSN-------QMTRNTGFVTQE-DVLSPYLTVTETMVFTALLQLPNSFTE 156
GR+ +G+ + + R G + Q ++LS TV + + L+L T
Sbjct: 59 SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSR-TVFDNVALP--LELAG--TP 113
Query: 157 KEKIKCAEAVMTEL----GLSECKNS----LIGGPLTRGVSGGERKRVSIGQEILINPSL 208
K +IK A +TEL GLS+ + L SGG+++RV+I + + NP +
Sbjct: 114 KAEIK---ARVTELLELVGLSDKADRYPAQL---------SGGQKQRVAIARALASNPKV 161
Query: 209 LFLDEPTSGLDSTIAQQILSILLKLANG--GRTIVMTIHQ 246
L DE TS LD + IL LLK N G TIV+ H+
Sbjct: 162 LLCDEATSALDPATTRSILE-LLKDINRELGLTIVLITHE 200
|
Length = 343 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 1e-08
Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 14/187 (7%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL--GRINGRITYNGKPFSNQMTRNT- 123
L ++ V+ GE++++ G +G GK+TL+ L G G G I + G+ R+T
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80
Query: 124 --GFVT--QEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKC-AEAVMTELGLSECKNS 178
G QE L L+V E + F P + + + A+ ++ +L L +
Sbjct: 81 RAGIAIIHQELALVKELSVLENI-FLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPAT 139
Query: 179 LIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGR 238
+G + G+++ V I + + LL LDEPT+ L + +L I+ L G
Sbjct: 140 PVG-----NLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGI 194
Query: 239 TIVMTIH 245
+ H
Sbjct: 195 ACIYISH 201
|
Length = 506 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-08
Identities = 54/193 (27%), Positives = 92/193 (47%), Gaps = 18/193 (9%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNG------KPFS 116
EK L + ++ GE + ++G +G GK+TL+ L G L +G+I +G K
Sbjct: 19 EKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKL 78
Query: 117 NQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKC-AEAVMTELGLS-- 173
+ + + G V Q Y ET+ N +E+I+ + M +GL
Sbjct: 79 SDIRKKVGLVFQ---YPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYE 135
Query: 174 ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL 233
+ K+ P +SGG+++RV+I + + P +L LDEPT+GLD +IL+ + +L
Sbjct: 136 DYKDK---SPFE--LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKEL 190
Query: 234 -ANGGRTIVMTIH 245
TI++ H
Sbjct: 191 HKEYNMTIILVSH 203
|
Length = 287 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 2e-08
Identities = 58/231 (25%), Positives = 106/231 (45%), Gaps = 44/231 (19%)
Query: 48 IKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR---- 103
I +K G++ + K K L I + G ++A++G +G GKT+L++A+ G L
Sbjct: 615 ISIKNGYFSWDSKTS-KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETS 673
Query: 104 ---INGRITYNGKP---FSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEK 157
I G + Y + F+ + N F + + Y + TAL + +
Sbjct: 674 SVVIRGSVAYVPQVSWIFNATVRENILFGSDFES-ERYWRAIDV---TALQHDLDLLPGR 729
Query: 158 EKIKCAEAVMTELGLSECKNSLIGGPLTRGV--SGGERKRVSIGQEILINPSLLFLDEPT 215
+ +TE+G RGV SGG+++RVS+ + + N + D+P
Sbjct: 730 D--------LTEIG-------------ERGVNISGGQKQRVSMARAVYSNSDIYIFDDPL 768
Query: 216 SGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYM--FHKVLLLSEG 264
S LD+ +A Q+ +K G+T V+ +N L+++ +++L+SEG
Sbjct: 769 SALDAHVAHQVFDSCMKDELKGKTRVLV----TNQLHFLPLMDRIILVSEG 815
|
Length = 1495 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 2e-08
Identities = 48/240 (20%), Positives = 110/240 (45%), Gaps = 18/240 (7%)
Query: 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG 98
L+ ++ + + G + +K ++ ++ G+ LA++G +G GK+TL L
Sbjct: 5 LEVRNLSKTFRYRTGLFRRQ----TVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLA 60
Query: 99 GRLGRINGRITYNGKP--FSNQMTRNTG----FVTQEDVLSPYLTVTETMVFTALLQLPN 152
G + +G I N P F + R+ F L+P L + + + L+L
Sbjct: 61 GMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQ--ILDFPLRLNT 118
Query: 153 SFTEKEKIKCAEAVMTELGL-SECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFL 211
+++ K + +GL + N ++ G+++RV++ + +++ P ++
Sbjct: 119 DLEPEQRRKQIFETLRMVGLLPDHANYYP-----HMLAPGQKQRVALARALILRPKIIIA 173
Query: 212 DEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271
DE + LD ++ Q+++++L+L + + Q M+ ++ +VL++ EG + G
Sbjct: 174 DEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGS 233
|
Length = 267 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 2e-08
Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 21/185 (11%)
Query: 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRIT----------YNGKPFSNQMTRNT 123
++ GE+ ++G SG GK+TLL A+ G G + N + + R
Sbjct: 47 IEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRLRTH 106
Query: 124 --GFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIG 181
V Q+ L P+ TV E + F +Q + E+ K + + +GL++ + G
Sbjct: 107 RVSMVFQQFALLPWRTVEENVAFGLEMQ---GMPKAERRKRVDEQLELVGLAQWADRKPG 163
Query: 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL-ANGGRTI 240
+SGG ++RV + + +L +DEP S LD I Q+ LL+L + +TI
Sbjct: 164 E-----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKTI 218
Query: 241 VMTIH 245
V H
Sbjct: 219 VFVSH 223
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 2e-08
Identities = 58/211 (27%), Positives = 101/211 (47%), Gaps = 19/211 (9%)
Query: 56 GSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115
+K+ E+ +L + + G+ +A++G SGCGK+TLL L G G + P
Sbjct: 17 AVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPL 76
Query: 116 SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC 175
+ + +T + Q+ L P+ V + + L L + + A + +GL++
Sbjct: 77 A-EAREDTRLMFQDARLLPWKKVIDNVG----LGLKGQWRDA-----ALQALAAVGLADR 126
Query: 176 KNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLD--STIAQQILSILLKL 233
N P +SGG+++RV++ + ++ P LL LDEP LD + I Q L L
Sbjct: 127 ANEW---PAA--LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQ 181
Query: 234 ANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
+ G T+++ H S + M +VLL+ EG
Sbjct: 182 QH-GFTVLLVTHDVSEAV-AMADRVLLIEEG 210
|
Length = 257 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 2e-08
Identities = 46/207 (22%), Positives = 90/207 (43%), Gaps = 38/207 (18%)
Query: 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----QMTR 121
+LK ++ VK GE + ++G +G GK+TL+ AL L G+I +G S +
Sbjct: 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82
Query: 122 NTGFVTQEDVLSPYLTVTETMVFTALLQLP----NSFTEKEKIKCAEAVMTELGLSECKN 177
+ + Q+ L F+ ++ + ++++E + L +SE
Sbjct: 83 SLTIIPQDPTL-----------FSGTIRSNLDPFDEYSDEE-------IYGALRVSEGGL 124
Query: 178 SLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGG 237
+L S G+R+ + + + +L P +L LDE T+ +D I + +
Sbjct: 125 NL---------SQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNS 175
Query: 238 RTIVMTIHQPSNMLYYMFHKVLLLSEG 264
TI+ H+ ++ Y K+L++ G
Sbjct: 176 -TILTIAHRLRTIIDY--DKILVMDAG 199
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 2e-08
Identities = 61/241 (25%), Positives = 103/241 (42%), Gaps = 61/241 (25%)
Query: 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTAL 97
TL + V + + +YGS + K + + ++ A +GPSGCGK+T+L
Sbjct: 3 TLNGTETVLRTENLNVYYGSFLAV------KNVWLDIPKNQITAFIGPSGCGKSTILRCF 56
Query: 98 GGRLG------RINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTET-----MVFTA 146
RL R+ G++T++GK ++ +P + E MVF
Sbjct: 57 -NRLNDLIPGFRVEGKVTFHGK----------------NLYAPDVDPVEVRRRIGMVF-- 97
Query: 147 LLQLPNSFTEK--------EKIKCAEAVMTELG---------LSECKNSLIGGPLTRGVS 189
Q PN F + +I + M EL E K+ L L+ +S
Sbjct: 98 --QKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLS--LS 153
Query: 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSN 249
GG+++R+ I + I + P ++ +DEP S LD +I ++ +L TI++ H N
Sbjct: 154 GGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTH---N 209
Query: 250 M 250
M
Sbjct: 210 M 210
|
Length = 264 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 2e-08
Identities = 55/230 (23%), Positives = 100/230 (43%), Gaps = 19/230 (8%)
Query: 37 VTLKFEDIVYK--IKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLL 94
V+ + K G G ++ E LK ++ V GE + ++G +G GK+TLL
Sbjct: 6 VSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLL 65
Query: 95 TALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSF 154
L G +G +T G+ S+ + GF +P LT E + L L S
Sbjct: 66 RLLAGIYPPDSGTVTVRGRV-SSLLGLGGGF-------NPELTGRENIYLNGRL-LGLSR 116
Query: 155 TEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEP 214
E ++ +ELG + + P+ + S G + R++ + P +L +DE
Sbjct: 117 KEIDEKIDEIIEFSELG--DFIDL----PV-KTYSSGMKARLAFAIATALEPDILLIDEV 169
Query: 215 TSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
+ D+ ++ L +L G+T+++ H PS++ + L+L +G
Sbjct: 170 LAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLC-DRALVLEKG 218
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 3e-08
Identities = 45/180 (25%), Positives = 86/180 (47%), Gaps = 15/180 (8%)
Query: 74 VKPGEMLAMLGPSGCGKTTLLTAL-GGRLGRINGRITYNGKPFSNQ-----MTRNTGFVT 127
++ GE+L + G G G+T L+ L G GR G I +GKP + + + V
Sbjct: 285 LRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVP 344
Query: 128 QE---DVLSPYLTVTETMVFTALLQL--PNSFTEKEKIKCAEAVMTELGLSECKNSLIGG 182
++ D + P + V + + AL + + + ++K + L + K +
Sbjct: 345 EDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKV---KTASPEL 401
Query: 183 PLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVM 242
+ R +SGG +++ + + +L+NP +L LDEPT G+D +I ++ +L G I++
Sbjct: 402 AIAR-LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIV 460
|
Length = 506 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 4e-08
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 2/142 (1%)
Query: 313 ALEQKMLEKEIPSGMYRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFET 372
A+E+ + +E +GMY Y +++++ ++P L+ T + I Y M + TA+ FF
Sbjct: 1271 AVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWF 1330
Query: 373 LFVLLFSVLVSQGLGLAIGAMVMEQKSATILGSIIMQLFVLAGGYYV--QNVPSFIAWIE 430
F+ FS L G+ ++ Q+ A I + LF L G+++ +P + W
Sbjct: 1331 YFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYY 1390
Query: 431 YLSIGHHTYKLLLGSQYNYNET 452
++ T L+ SQY E
Sbjct: 1391 WICPVAWTVYGLIVSQYGDVED 1412
|
Length = 1470 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 4e-08
Identities = 41/182 (22%), Positives = 68/182 (37%), Gaps = 60/182 (32%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN---QMTRNT 123
L G++ V+ GE+ A+LG +G GK+TL+ L G +G I +GK S + R
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRA 75
Query: 124 GFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGP 183
G MV+ QL S E++ ++ A A+
Sbjct: 76 GI---------------AMVY----QL--SVGERQMVEIARALAR--------------- 99
Query: 184 LTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMT 243
+LI LDEPT+ L +++ ++ +L G ++
Sbjct: 100 ---------------NARLLI------LDEPTAALTPAEVERLFKVIRRLRAQGVAVIFI 138
Query: 244 IH 245
H
Sbjct: 139 SH 140
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 4e-08
Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 30/191 (15%)
Query: 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTAL 97
++F I + F S++ + + ++ K G+ +A++GP+G GKTTL+ L
Sbjct: 334 AVEFRHITF------EFANSSQGVFD------VSFEAKAGQTVAIVGPTGAGKTTLINLL 381
Query: 98 GGRLGRINGRITYNGKPFS----NQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNS 153
G+I +G + + ++ V Q+ L ++ E +
Sbjct: 382 QRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNR-SIRENIRLGR-----EG 435
Query: 154 FTEKEKIKCAE-AVMTELGLSECKN--SLIGGPLTRG--VSGGERKRVSIGQEILINPSL 208
T++E + A+ A + L +L+G RG +SGGER+R++I + IL N +
Sbjct: 436 ATDEEVYEAAKAAAAHDFILKRSNGYDTLVG---ERGNRLSGGERQRLAIARAILKNAPI 492
Query: 209 LFLDEPTSGLD 219
L LDE TS LD
Sbjct: 493 LVLDEATSALD 503
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 7e-08
Identities = 47/179 (26%), Positives = 75/179 (41%), Gaps = 15/179 (8%)
Query: 64 KAILKGITGMVKPGEMLAMLGPSGCGKT-TLLTALG---GRLGRINGRITYNGKPFSNQM 119
+ ++ G++ ++ G +LA++G SG GK+ T ALG + + GR+ +GKP +
Sbjct: 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCA 75
Query: 120 TRNTGFVT----QEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC 175
R T +P T+ T L L + EAV GL
Sbjct: 76 LRGRKIATIMQNPRSAFNPLHTMHTHARET-CLALGKPADDATLTAALEAV----GLENA 130
Query: 176 KNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLA 234
L P +SGG +R+ I +L + DEPT+ LD +IL +L +
Sbjct: 131 ARVLKLYPFE--MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIV 187
|
Length = 254 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 7e-08
Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 52/185 (28%)
Query: 49 KMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL----GRI 104
+ KGF + + K + +++ GE LA++G +G GKTTLL L G L G +
Sbjct: 324 NLTKGF-------DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
Query: 105 ----NGRITY----NGKPFSNQMTRNTGFVTQEDVLSPYLTVT--ETMVFTALLQLPNSF 154
N I Y + F N +T + D +S + E V L +L F
Sbjct: 377 KWSENANIGYYAQDHAYDFENDLT-----LF--DWMSQWRQEGDDEQAVRGTLGRL--LF 427
Query: 155 TEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEP 214
++ + K + +SGGE+ R+ G+ ++ P++L +DEP
Sbjct: 428 SQDDIKKSV----------------------KVLSGGEKGRMLFGKLMMQKPNVLVMDEP 465
Query: 215 TSGLD 219
T+ +D
Sbjct: 466 TNHMD 470
|
Length = 530 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 8e-08
Identities = 58/217 (26%), Positives = 100/217 (46%), Gaps = 19/217 (8%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL---GRINGRITYNGKPFSNQM 119
+K L I+ + G A++G +G GK+T+ + G L N +IT +G + +
Sbjct: 19 KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKT 78
Query: 120 TRN----TGFVTQE-DVLSPYLTVTETMVFTALLQLPNSFTEKEK-IKCAEAVMTELGLS 173
+ G V Q D TV + + F L N + + IK V+ ++G+
Sbjct: 79 VWDIREKVGIVFQNPDNQFVGATVGDDVAFG----LENRAVPRPEMIKIVRDVLADVGML 134
Query: 174 ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL 233
+ +S +SGG+++RV+I + + P ++ LDE TS LD +QIL ++ KL
Sbjct: 135 DYIDS-----EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKL 189
Query: 234 ANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270
V++I + M +VL+L +G L G
Sbjct: 190 KKKNNLTVISITHDIDEA-NMADQVLVLDDGKLLAQG 225
|
Length = 282 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-07
Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 24/194 (12%)
Query: 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNT 123
KA L G V PG ++A++G +G GK+T++ L G R G I Y GK + +++
Sbjct: 18 KA-LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSS 76
Query: 124 -----GFVTQEDVLSPYLTVTETMVFTALLQLPNSFTE-------KEKIKCAEAVMTELG 171
G + QE L P LT+ E +F L F K+ A+ ++ L
Sbjct: 77 QEAGIGIIHQELNLIPQLTIAEN-IF-----LGREFVNRFGRIDWKKMYAEADKLLARLN 130
Query: 172 LSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL 231
L + L+G +S GE++ V I + + ++ +DEPT L T + + ++
Sbjct: 131 LRFSSDKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIR 185
Query: 232 KLANGGRTIVMTIH 245
+L + GR IV H
Sbjct: 186 ELKSQGRGIVYISH 199
|
Length = 501 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 48/185 (25%), Positives = 72/185 (38%), Gaps = 46/185 (24%)
Query: 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNT 123
+ +L T + PG+ + ++G +GCGK+TLL L + G T+ G
Sbjct: 14 RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG-------NWQL 66
Query: 124 GFVTQEDVLSPYLTVT----------ETMVFTALLQLPNSFTEKEKIKC----------- 162
+V QE +P L E A L N + I
Sbjct: 67 AWVNQE---TPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAW 123
Query: 163 -----AEAVMTELGLSECKNSLIGGPLTRGV---SGGERKRVSIGQEILINPSLLFLDEP 214
A +++ LG S + L R V SGG R R+++ Q ++ LL LDEP
Sbjct: 124 TIRSRAASLLHGLGFSNEQ-------LERPVSDFSGGWRMRLNLAQALICRSDLLLLDEP 176
Query: 215 TSGLD 219
T+ LD
Sbjct: 177 TNHLD 181
|
Length = 638 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 53/201 (26%), Positives = 88/201 (43%), Gaps = 45/201 (22%)
Query: 62 EEKAILKG---ITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ 118
+E A + I+ VK GE++ ++G SG GK+ A I G I Y G+ + +
Sbjct: 15 DESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLA-------IMGLIDYPGRVMAEK 67
Query: 119 MTRNTGFVTQEDVLSPYLTVTE---------TMVFT-ALLQLPNSFT------------- 155
+ N +D+ ++ E M+F + L +T
Sbjct: 68 LEFN-----GQDLQR--ISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ 120
Query: 156 ---EKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLD 212
+K + + A ++ ++G+ + + L P +SGG +RV I I P LL D
Sbjct: 121 GGNKKTRRQRAIDLLNQVGIPDPASRLDVYP--HQLSGGMSQRVMIAMAIACRPKLLIAD 178
Query: 213 EPTSGLDSTIAQQILSILLKL 233
EPT+ LD TI QI+ +LL+L
Sbjct: 179 EPTTALDVTIQAQIIELLLEL 199
|
Length = 326 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 60/211 (28%), Positives = 96/211 (45%), Gaps = 28/211 (13%)
Query: 77 GEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN---QMTRNTGFV-TQED-- 130
GE+L + G G G+T L+ L G L R +G +T +G Q G V ED
Sbjct: 278 GEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRK 337
Query: 131 ----VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK----NSLIGG 182
VL ++V E M TAL + + +AV + L K IG
Sbjct: 338 RDGLVLG--MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGL 395
Query: 183 PLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVM 242
+SGG +++V+I + ++ P +L LDEPT G+D ++I ++ + G +I++
Sbjct: 396 -----LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIIL 450
Query: 243 TIHQPSNM--LYYMFHKVLLLSEGYPLYSGE 271
S M + M ++L++ EG SGE
Sbjct: 451 V---SSEMPEVLGMSDRILVMHEGR--ISGE 476
|
Length = 501 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 24/181 (13%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRN 122
+ I I+ V G++ A++GPSG GKTTLL +GG++ +G I ++G+ M+R+
Sbjct: 19 NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIP-AMSRS 77
Query: 123 --------TGFVTQEDVLSPYLTVTETMVFTAL--LQLPNSFTEKEKIKCAEAVMTELGL 172
+ Q L + V + + + QLP + EAV GL
Sbjct: 78 RLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAV----GL 133
Query: 173 SECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLK 232
L+ L SGG +R ++ + I + P L+ DEP G D + +L+K
Sbjct: 134 RGAAK-LMPSEL----SGGMARRAALARAIALEPDLIMFDEPFVGQDPI----TMGVLVK 184
Query: 233 L 233
L
Sbjct: 185 L 185
|
Length = 269 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 2e-07
Identities = 50/200 (25%), Positives = 96/200 (48%), Gaps = 29/200 (14%)
Query: 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----QMT 120
A+L+ I+ + PG+ + +LG +G GK+TLL+A RL G I +G +++ +
Sbjct: 18 AVLENISFSISPGQRVGLLGRTGSGKSTLLSAF-LRLLNTEGDIQIDGVSWNSVPLQKWR 76
Query: 121 RNTGFVTQEDVLSPYLTVTETMVFTALLQL---PNS-FTEKEKIKCAEAVMTELGLSECK 176
+ G + Q + +F+ + P ++++E K AE V + + +
Sbjct: 77 KAFGVIPQ-----------KVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFP 125
Query: 177 NSL-----IGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL 231
L GG + +S G ++ + + + +L +L LDEP++ LD I Q++ L
Sbjct: 126 GQLDFVLVDGGCV---LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDP-ITYQVIRKTL 181
Query: 232 KLANGGRTIVMTIHQPSNML 251
K A T++++ H+ ML
Sbjct: 182 KQAFADCTVILSEHRIEAML 201
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 53/198 (26%), Positives = 99/198 (50%), Gaps = 36/198 (18%)
Query: 60 KIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQM 119
++E K +L+ ++ V G++ +LG +G GK+TLL +L + GR+
Sbjct: 669 ELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV---------WA 719
Query: 120 TRNTGFVTQEDVLSPYL---TVTETMVFTALLQLPNSFTEKEKIKCAEAV-MTELGLSEC 175
R+ +V Q+ ++ TV ++F F E++ + A+AV +++L E
Sbjct: 720 ERSIAYVPQQ----AWIMNATVRGNILF---------FDEEDAARLADAVRVSQL---EA 763
Query: 176 KNSLIGGPLT-----RGV--SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILS 228
+ +GG L +GV SGG++ RVS+ + + N + LD+P S LD+ + ++++
Sbjct: 764 DLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVE 823
Query: 229 ILLKLANGGRTIVMTIHQ 246
A G+T V+ HQ
Sbjct: 824 ECFLGALAGKTRVLATHQ 841
|
Length = 1560 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 4e-07
Identities = 51/214 (23%), Positives = 100/214 (46%), Gaps = 29/214 (13%)
Query: 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG 98
L+ E++V+K Y + + L G++ + GE ++++G +G GK+T +
Sbjct: 5 LEVENLVFK-------YEKESDVNQ---LNGVSFSITKGEWVSIIGQNGSGKSTTARLID 54
Query: 99 GRLGRINGRITYNGKPFSNQ----MTRNTGFVTQE-DVLSPYLTVTETMVFTALLQLPNS 153
G G++ +G+ + + + R G V Q D TV + + F Q
Sbjct: 55 GLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---G 111
Query: 154 FTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRG---VSGGERKRVSIGQEILINPSLLF 210
+E IK + + + + + K TR +SGG+++RV++ I + P ++
Sbjct: 112 IPREEMIKRVDEALLAVNMLDFK--------TREPARLSGGQKQRVAVAGIIALRPEIII 163
Query: 211 LDEPTSGLDSTIAQQILSILLKLANGGRTIVMTI 244
LDE TS LD T Q+I+ ++ ++ + V++I
Sbjct: 164 LDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSI 197
|
Length = 277 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 4e-07
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRIT 109
+K K +LK I+ + PG+ + ++G +G GK+TLL + G L G +T
Sbjct: 7 SKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 5e-07
Identities = 65/267 (24%), Positives = 118/267 (44%), Gaps = 30/267 (11%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNG----KPFSNQMTRN 122
L+ I ++K GE + ++G +G GK+TL L G L G++ +G Q R
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 123 TGFVTQEDVLSPYL--TVTETMVFTAL-LQLPNSFTEKEKIKCAEAVMTELGLSECKNSL 179
+ ++ + ++ TV E + F L LP E K + + E+GL + ++
Sbjct: 78 LVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPI----EIRKRVDRALAEIGLEKYRHR- 132
Query: 180 IGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRT 239
P T +SGG+ + V++ + + P L DE TS LD +L + KL G+T
Sbjct: 133 --SPKT--LSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKT 188
Query: 240 IVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMN--YFASIGYCPSVPTNPSDFLL 297
IV H + + +++++ G + GE ++ ++G P PS L+
Sbjct: 189 IVYITHNLEEL--HDADRIIVMDRGKIVLEGEPENVLSDVSLQTLGLTP-----PS--LI 239
Query: 298 DLASGMPSNG---SWKEQALEQKMLEK 321
+LA + +G W+ + E+
Sbjct: 240 ELAENLKMHGVVIPWENTSSPSSFAEE 266
|
Length = 274 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 9e-07
Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 21/171 (12%)
Query: 77 GEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYL 136
G+++ ++G +G GK+TL +GG L G++ NG+ + + + G LS L
Sbjct: 50 GDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE--VSVIAISAG-------LSGQL 100
Query: 137 TVTETMVFTALLQLPNSFTEKEKIKCAEAVM--TELGLSECKNSLIGGPLTRGVSGGERK 194
T E + F L F KE ++ +ELG I P+ + S G R
Sbjct: 101 TGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELG------EFIYQPVKK-YSSGMRA 150
Query: 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIH 245
++ I +NP +L +DE S D T AQ+ L + + +TI H
Sbjct: 151 KLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSH 201
|
Length = 264 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 184 LTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLA-NGGRTIVM 242
+ R +SGGE++RV + +++ P L DEPT LD A+ + + L + G ++V+
Sbjct: 165 IARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVL 224
Query: 243 TIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNYF 279
T H P ++ + K + L G G + F
Sbjct: 225 TSHWPE-VIEDLSDKAIWLENGEIKEEGTPDEVVAVF 260
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 48/196 (24%), Positives = 92/196 (46%), Gaps = 17/196 (8%)
Query: 55 YGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP 114
+G +++ E+ +L+ + +KPG+++A++G SG GKTTLL + LG GR +P
Sbjct: 387 FGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMI---LGAQKGRGEEKYRP 443
Query: 115 FSN--QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGL 172
S ++ +NT P E + L + A ++ GL
Sbjct: 444 DSGKVEVPKNTVSALIPGEYEP--EFGEVTILEHLRSKTGD------LNAAVEILNRAGL 495
Query: 173 SECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLK 232
S+ L + +S G+++R + + + P++L +DE + LD A ++ + +
Sbjct: 496 SDA--VLYRRKFSE-LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISE 552
Query: 233 LANG-GRTIVMTIHQP 247
LA G T+++ H+P
Sbjct: 553 LAREAGITLIVVTHRP 568
|
Length = 593 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 23/181 (12%)
Query: 77 GEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTR---NTGF--VTQEDV 131
GE+L + G G +T ++ L G + G IT +GK +N N GF VT+E
Sbjct: 274 GEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERR 333
Query: 132 ---LSPYLTVTETMVFTALLQLPNSFTEK------EKIKC-AEAVMTELGLSECKNSLIG 181
+ YL + F +L+ ++ K ++K + V+ + + +
Sbjct: 334 STGIYAYLDIG----FNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQI 389
Query: 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIV 241
G L SGG +++V IG+ +L P +L LDEPT G+D +I ++ +LA + I+
Sbjct: 390 GSL----SGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGII 445
Query: 242 M 242
+
Sbjct: 446 I 446
|
Length = 491 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 62/275 (22%), Positives = 111/275 (40%), Gaps = 67/275 (24%)
Query: 40 KFEDIVYKIKMK--KGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTAL 97
K +DI KI+ K + Y + K +E I K + + G+ A +G SGCGK+T+L +
Sbjct: 376 KLKDI-KKIQFKNVRFHYDTRKDVE---IYKDLNFTLTEGKTYAFVGESGCGKSTILKLI 431
Query: 98 ---------------GGRLGRIN--------GRITYNGKPFSNQMTRN------------ 122
L IN G ++ + FSN + N
Sbjct: 432 ERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLE 491
Query: 123 --------TGFVTQED----------VLSPYLTVTETMVFTALLQLP---NSFTEKEKIK 161
G +QE+ ++ T L+++ + + E +
Sbjct: 492 ALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVD 551
Query: 162 CAEAVMTE---LGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGL 218
++ V+ L + +L+G ++ +SGG+++R+SI + I+ NP +L LDE TS L
Sbjct: 552 VSKKVLIHDFVSALPDKYETLVGSNASK-LSGGQKQRISIARAIIRNPKILILDEATSSL 610
Query: 219 DSTIAQQILSILLKL-ANGGRTIVMTIHQPSNMLY 252
D+ + + L N R ++ H+ S + Y
Sbjct: 611 DNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRY 645
|
Length = 1466 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 31/141 (21%)
Query: 108 ITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVM 167
+ Y GK + DVL +TV E + F F KI +
Sbjct: 771 VKYKGKNIA-------------DVLD--MTVEEALEF---------FEAIPKIARKLQTL 806
Query: 168 TELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEIL---INPSLLFLDEPTSGLDSTIAQ 224
++GL K +G P T +SGGE +RV + +E+ +L LDEPT+GL +
Sbjct: 807 VDVGLGYIK---LGQPATT-LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIK 862
Query: 225 QILSILLKLANGGRTIVMTIH 245
++L +L +L + G T+++ H
Sbjct: 863 KLLEVLHRLVDKGNTVIVIEH 883
|
Length = 935 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 48/236 (20%), Positives = 88/236 (37%), Gaps = 43/236 (18%)
Query: 49 KMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRI 108
MKK ++E G + E++ +LGP+G GKTT + L G L G I
Sbjct: 5 TMKKTLGEFTLEVEG--------GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDI 56
Query: 109 TYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEA--- 165
S + Q Y+ LL + K
Sbjct: 57 EIELDTVS--------YKPQ------YIKADYEGTVRDLL------SSITKDFYTHPYFK 96
Query: 166 --VMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIA 223
+ L + + + + +SGGE +RV+I + + + LDEP++ LD
Sbjct: 97 TEIAKPLQIEQILDREV-----PELSGGELQRVAIAACLSKDADIYLLDEPSAYLDV--E 149
Query: 224 QQIL--SILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMN 277
Q+++ ++ + A + M+ Y+ ++++ EG P +G A+ +
Sbjct: 150 QRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVF-EGEPSVNGVANPPQS 204
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 37/246 (15%)
Query: 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTA 96
V +K E++ + Y + E LK ++ + GE +A+LG +G GK+T+
Sbjct: 6 VMIKVENVSFS-------YPN----SENNALKNVSFEINEGEYVAILGHNGSGKSTISKI 54
Query: 97 LGGRLGRINGRITYNGKPFS----NQMTRNTGFVTQE-DVLSPYLTVTETMVFTALLQLP 151
L G L +G I +G S ++ + G + Q D TV + + F L
Sbjct: 55 LTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFG----LE 110
Query: 152 NSFTEKEKIK-----CAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINP 206
N +K+K A+ V E L + +L SGG+++RV+I + +NP
Sbjct: 111 NKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNL---------SGGQKQRVAIASVLALNP 161
Query: 207 SLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265
++ DE TS LD ++I I++ L +T++ H + + KV++ SEG
Sbjct: 162 EIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI--LADKVIVFSEGK 219
Query: 266 PLYSGE 271
+ G+
Sbjct: 220 LIAQGK 225
|
Length = 271 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 55/215 (25%), Positives = 104/215 (48%), Gaps = 24/215 (11%)
Query: 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG 98
+K +++ YK Y SN++ EK L + VK GE L +LG +G GK+T+ +
Sbjct: 5 IKCKNVSYK-------YESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMN 57
Query: 99 GRLGRINGRITYNGKPFSNQ-----MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP-N 152
L G++ +G S++ + G V Q +P + T+V + P N
Sbjct: 58 ALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQ----NPDNQIVATIVEEDVAFGPEN 113
Query: 153 SFTEKEKIKC-AEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFL 211
E+I+ + + ++G+ E + P +SGG+++RV+I + + P +
Sbjct: 114 LGIPPEEIRERVDESLKKVGMYEYRRH---AP--HLLSGGQKQRVAIAGILAMRPECIIF 168
Query: 212 DEPTSGLDSTIAQQILSILLKL-ANGGRTIVMTIH 245
DEPT+ LD + +++++ + +L G TI++ H
Sbjct: 169 DEPTAMLDPSGRREVVNTIKELNKKYGITIILITH 203
|
Length = 280 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 3e-06
Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 17/195 (8%)
Query: 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN---QMT 120
+A+L+ ++ V+ G+ + +LG +G GK+TLL+AL RL G I +G +++ Q
Sbjct: 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL-LRLLSTEGEIQIDGVSWNSVTLQTW 1290
Query: 121 RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAV----MTELGLSECK 176
R V + V + F L ++++E K AE V + E +
Sbjct: 1291 RKAFGVIPQKVF------IFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLD 1344
Query: 177 NSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG 236
L+ G +S G ++ + + + IL +L LDEP++ LD + QI+ LK +
Sbjct: 1345 FVLVDGGYV--LSNGHKQLMCLARSILSKAKILLLDEPSAHLDP-VTLQIIRKTLKQSFS 1401
Query: 237 GRTIVMTIHQPSNML 251
T++++ H+ +L
Sbjct: 1402 NCTVILSEHRVEALL 1416
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 58/261 (22%), Positives = 103/261 (39%), Gaps = 50/261 (19%)
Query: 32 RAKHPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKT 91
K P K D + + Y KK L+ G + GE++ +LGP+G GKT
Sbjct: 329 EEKPPRDDKARDTLVE-------YPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKT 381
Query: 92 TLLTALGGRL-----GRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTA 146
T + L G + + +++Y KP +SP T + +
Sbjct: 382 TFVKLLAGVIKPDEGSEEDLKVSY--KP---------------QYISPDYDGTVEDLLRS 424
Query: 147 LLQ--LPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILI 204
++ +S+ + E ++ L L + L+ P+ +SGGE +RV+I +
Sbjct: 425 AIRSAFGSSYFKTE-------IVKPLNLED----LLERPV-DELSGGELQRVAIAAALSR 472
Query: 205 NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
L LDEP++ LD + ++ + + + M+ Y+ ++++ EG
Sbjct: 473 EADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVF-EG 531
Query: 265 YPLYSGEASG------AMNYF 279
P G AS MN F
Sbjct: 532 EPGKHGHASPPMSMREGMNRF 552
|
Length = 591 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 4e-06
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 189 SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIH 245
SGGE+ R+++ + +L NP+LL LDEPT+ LD + + L LK G T+++ H
Sbjct: 72 SGGEKMRLALAKLLLENPNLLLLDEPTNHLD-LESIEALEEALKEYPG--TVILVSH 125
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 4e-06
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 189 SGGERKRVSIGQEILINP--SLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQ 246
SGGE +RV + E+ P +L LDEP++GL Q+L ++ L + G T+++ H
Sbjct: 89 SGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHN 148
Query: 247 PSNM 250
+
Sbjct: 149 LDVL 152
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-06
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 13/138 (9%)
Query: 321 KEIPSGMYRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTAS-------NFFETL 373
+E PS + A+ ++I ++P LV T+F I Y+ G AS
Sbjct: 1161 RERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFW 1220
Query: 374 FVLLFSVLVSQGLGLAIGAMVMEQKSATILGSIIMQLFVLAGGYYV--QNVPSFIAWIEY 431
+ L LG + + +A +L S++ + + G +P F WI
Sbjct: 1221 LLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGF--WIFM 1278
Query: 432 LSIGHHTYKL--LLGSQY 447
TY + LL +
Sbjct: 1279 YRCSPFTYLVQALLSTGL 1296
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 6e-06
Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 16/188 (8%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMT- 120
++ +L+ I+ + G +L + G +G GKTTLL + G L G I + + +
Sbjct: 12 HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCT 71
Query: 121 --RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNS 178
+ FV ++PYLT+ E ++ + S +TEL
Sbjct: 72 YQKQLCFVGHRSGINPYLTLRENCLY----DIHFSPGAVG--------ITELCRLFSLEH 119
Query: 179 LIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGR 238
LI P +S G++++V++ + + L LDEP LD I++ + + G
Sbjct: 120 LIDYPCGL-LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGG 178
Query: 239 TIVMTIHQ 246
+++T HQ
Sbjct: 179 AVLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 6e-06
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 76 PGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGK 113
PGE+L ++G SG GKTTLL AL RL G + Y +
Sbjct: 31 PGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMR 68
|
Length = 258 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 6e-06
Identities = 52/180 (28%), Positives = 87/180 (48%), Gaps = 20/180 (11%)
Query: 48 IKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGR 107
I++K + + +EK L ++ VK GE L+++G +G GK+T + + G L +G+
Sbjct: 5 IEVKNLTFKYKED-QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQ 63
Query: 108 ITYNGKPFSNQ----MTRNTGFVTQE-DVLSPYLTVTETMVFTALLQLPNSFTEKEKIKC 162
I +G + + + G V Q D TV + + F L N E++K
Sbjct: 64 IIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFG----LENKGIPHEEMK- 118
Query: 163 AEAVMTEL---GLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLD 219
E V L G+ + K P R +SGG+++RV+I + + P ++ LDE TS LD
Sbjct: 119 -ERVNEALELVGMQDFKER---EP-AR-LSGGQKQRVAIAGAVAMRPKIIILDEATSMLD 172
|
Length = 279 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 6e-06
Identities = 52/194 (26%), Positives = 79/194 (40%), Gaps = 41/194 (21%)
Query: 54 FYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGK 113
K+I LK I+ PG + +LG +G GK+TLL + G G
Sbjct: 15 VVPPKKQI-----LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEAR---- 65
Query: 114 PFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKI--KCAE------A 165
+ + G++ QE L P TV E V + ++ + +I AE A
Sbjct: 66 -PAPGIKV--GYLPQEPQLDPEKTVREN-VEEGVAEVKAALDRFNEIYAAYAEPDADFDA 121
Query: 166 VMTELG-LSECKNSLIGGPLTRGV-------------------SGGERKRVSIGQEILIN 205
+ E G L E ++ L + SGGER+RV++ + +L
Sbjct: 122 LAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEK 181
Query: 206 PSLLFLDEPTSGLD 219
P +L LDEPT+ LD
Sbjct: 182 PDMLLLDEPTNHLD 195
|
Length = 556 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 8e-06
Identities = 22/51 (43%), Positives = 36/51 (70%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRI 108
N +I+ K ++K + V+ G+ +A++GP+GCGKTTLL + G+L +GRI
Sbjct: 326 NYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI 376
|
Length = 635 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 1e-05
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTI 240
GP + +SGG+++R++I + +L P +L LDE TS LDS + I ++ + + +TI
Sbjct: 1353 GPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTI 1412
Query: 241 VMTIHQ 246
+ H+
Sbjct: 1413 ITIAHR 1418
|
Length = 1466 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 46.7 bits (110), Expect = 1e-05
Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 184 LTRGVSGGERKRVSIGQEIL---INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTI 240
L +G+S G ++ +++ +L SLL +DEP +GL + ++++ +L +L+ G +
Sbjct: 186 LIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQL 245
Query: 241 VMTIHQPS 248
+ T H P
Sbjct: 246 IFTTHSPL 253
|
Length = 256 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-05
Identities = 42/187 (22%), Positives = 87/187 (46%), Gaps = 18/187 (9%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ----MTRN 122
LK ++ + G+ +++G +G GK+T+ + G +G I YN + ++ + ++
Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84
Query: 123 TGFVTQ--EDVLSPYLTVTETMVFTALLQLPNSFTEKEKIK-CAEAVMTELGLSECKNSL 179
G V Q ++ V + + L N +++ + ++ + E +
Sbjct: 85 IGIVFQNPDNQF-----VGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYE 139
Query: 180 IGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL-ANGGR 238
+SGG+++RV+I + +NPS++ LDE TS LD Q +L ++ K+ +
Sbjct: 140 -----PNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNI 194
Query: 239 TIVMTIH 245
TI+ H
Sbjct: 195 TIISITH 201
|
Length = 269 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 76 PGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITY 110
PGE+L ++G SG GKTTLL + GRL G +TY
Sbjct: 31 PGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTY 65
|
Length = 258 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 184 LTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN 235
L R SGG ++R+ I + ++ P L+F+DEPT GLD ++ ++L +L L
Sbjct: 148 LPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVR 199
|
Length = 258 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 2e-05
Identities = 55/215 (25%), Positives = 99/215 (46%), Gaps = 32/215 (14%)
Query: 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS----NQM 119
K +LK + +KPG+ + + G +G GK++L A + +G+I +G S + +
Sbjct: 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93
Query: 120 TRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTE-LGLSECKN- 177
+ Q+ +L F+ ++ F + KC + + E L +++ KN
Sbjct: 94 RSRLSIILQDPIL-----------FSGSIR----FNLDPECKCTDDRLWEALEIAQLKNM 138
Query: 178 --SLIGG---PLTRG---VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSI 229
SL GG +T G S G+R+ + + + S+L +DE T+ +D + IL
Sbjct: 139 VKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMA-TENILQK 197
Query: 230 LLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
++ A RT+V H+ S +L VL+LS G
Sbjct: 198 VVMTAFADRTVVTIAHRVSTILDA--DLVLVLSRG 230
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 342 LPIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLFSVLVSQGLGLAIGAMVMEQKSAT 401
+PI ++ V+V ITY+ G P AS FF+ L ++ ++ G+ I ++ A
Sbjct: 622 IPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIAN 681
Query: 402 ILGSIIMQLFVLAGGYYV--QNVPSFIAWIEYLS 433
G++++ L L GG+ + +P++ W ++S
Sbjct: 682 TGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVS 715
|
Length = 1470 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 3e-05
Identities = 40/192 (20%), Positives = 83/192 (43%), Gaps = 17/192 (8%)
Query: 77 GEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYL 136
G+++ ++G +GCGK+TL G G I +G S +++D +
Sbjct: 368 GDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSAD--------SRDDYRDLFS 419
Query: 137 TV-TETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGG--PLTRGVSGGER 193
+ + +F L+ E + A+ + L +++ K + G T +S G++
Sbjct: 420 AIFADFHLFDDLIGPDEG--EHASLDNAQQYLQRLEIAD-KVKIEDGGFSTTTALSTGQQ 476
Query: 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL-KLANGGRTIVMTIHQPSNMLY 252
KR+++ L + +L DE + D + LL L G+TI++ H + +
Sbjct: 477 KRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISH--DDQYF 534
Query: 253 YMFHKVLLLSEG 264
+ +++ L+ G
Sbjct: 535 ELADQIIKLAAG 546
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query: 180 IGGPLTRGVSGGERKRVSIGQEILI---NPSLLFLDEPTSGLDSTIAQQILSILLKLANG 236
+G PL+ +SGGE +R+ + E+L P+L LDEPT+GL + + ++ +L L +
Sbjct: 803 LGRPLS-SLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ 861
Query: 237 GRTIVMTIHQPSNM 250
G T+V+ H NM
Sbjct: 862 GHTVVIIEH---NM 872
|
Length = 1809 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 16/175 (9%)
Query: 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLS 133
+K GE++ ++G +G GK+TL L G +G I +GKP S + ED
Sbjct: 346 IKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAE--------QLEDYRK 397
Query: 134 PYLTV-TETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTR-GVSGG 191
+ V ++ +F LL P + I E + L L+ K SL G + +S G
Sbjct: 398 LFSAVFSDYHLFDQLLG-PEGKASPQLI---EKWLQRLELAH-KTSLNDGRFSNLKLSTG 452
Query: 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL-KLANGGRTIVMTIH 245
++KR+++ +L +L LDE + D ++ +LL L G+TI H
Sbjct: 453 QKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISH 507
|
Length = 546 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 3e-05
Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL-ANGGRTIVMTIHQ 246
+SGG+++RV++ I ++ + L LDEPT GLD + +++ +L + I+M H
Sbjct: 151 LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHN 210
Query: 247 PSNMLYYMFHKVLLLSEG 264
+L + +V+++ EG
Sbjct: 211 MDQVL-RIADEVIVMHEG 227
|
Length = 289 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 4e-05
Identities = 48/199 (24%), Positives = 80/199 (40%), Gaps = 51/199 (25%)
Query: 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQE---- 129
+ G++L ++GP+G GK+T L L G+L KP N G
Sbjct: 23 PREGQVLGLVGPNGIGKSTALKILAGKL-----------KP-------NLGKFDDPPDWD 64
Query: 130 DVLSPYLTVTETMVFTALL--------------QLPNSFTEK--EKIKCAEAVMTELGLS 173
++L + FT LL +P + K E +K + E G
Sbjct: 65 EILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKD----ERGKL 120
Query: 174 E--CKNSLIGGPLTRGV---SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILS 228
+ + L R + SGGE +RV+I + + F DEP+S LD I Q++ +
Sbjct: 121 DELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLD--IKQRLNA 178
Query: 229 --ILLKLANGGRTIVMTIH 245
++ +LA +++ H
Sbjct: 179 ARLIRELAEDDNYVLVVEH 197
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 5e-05
Identities = 50/187 (26%), Positives = 78/187 (41%), Gaps = 38/187 (20%)
Query: 73 MVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNT--------G 124
+ G+ A +G +G GK+ L AL G L ++G +Q + T
Sbjct: 25 TLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQ-------SQFSHITRLSFEQLQK 77
Query: 125 FVTQE------DVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNS 178
V+ E D+LSP +T TA + K+ +C + + + G
Sbjct: 78 LVSDEWQRNNTDMLSP--GEDDTGRTTAEIIQDEV---KDPARCEQ-LAQQFG------- 124
Query: 179 LIGGPLTRG---VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN 235
I L R +S GE ++ + Q ++ P LL LDEP GLD QQ+ +L L
Sbjct: 125 -ITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ 183
Query: 236 GGRTIVM 242
G T+V+
Sbjct: 184 SGITLVL 190
|
Length = 490 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 5e-05
Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 30/152 (19%)
Query: 72 GMVKPGEMLAMLGPSGCGKTTLLTALGGRL----GRINGRITYNGKPFSNQMTRNTGFVT 127
G + GE++ ++GP+G GKTT L G L G ++ + + KP Q + T
Sbjct: 360 GEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKP---QYIKPDYDGT 416
Query: 128 QEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRG 187
ED+L ++T+ L +S+ + E IK L L L+ +
Sbjct: 417 VEDLLR---SITD--------DLGSSYYKSEIIK-------PLQL----ERLLDKNVK-D 453
Query: 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLD 219
+SGGE +RV+I + + L LDEP++ LD
Sbjct: 454 LSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485
|
Length = 590 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 6e-05
Identities = 47/193 (24%), Positives = 86/193 (44%), Gaps = 32/193 (16%)
Query: 77 GEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----QMT---------RNT 123
GE+ ++G SG GK+ + A+ G + + N R+T + F + +++ N
Sbjct: 33 GEIRGLVGESGSGKSLIAKAICG-VNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNV 91
Query: 124 GFVTQE--DVLSPYLTVTETMVFTALLQLPNSFTEKE--------KIKCAEAVMTELGLS 173
+ QE L P V L+Q ++T K + + A ++ +G+
Sbjct: 92 SMIFQEPQSCLDPSERVGRQ-----LIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIK 146
Query: 174 ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL 233
+ K+ + P ++ GE ++V I + P LL DEPT+ ++ T QI +L +L
Sbjct: 147 DHKDIMRSYPYE--LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRL 204
Query: 234 -ANGGRTIVMTIH 245
N TI++ H
Sbjct: 205 NQNSNTTILLISH 217
|
Length = 330 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 9e-05
Identities = 52/180 (28%), Positives = 68/180 (37%), Gaps = 40/180 (22%)
Query: 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRN---TGFV-TQE 129
V+ GE+L + G G G+T L L G GRI NGK + T G V E
Sbjct: 286 VRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPE 345
Query: 130 DVLSP--YLTVTETMVFTALLQLPNSF---TEKEK-----------IKCAEAVMTELGLS 173
D S YL AL F +E IK A
Sbjct: 346 DRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQA----- 400
Query: 174 ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLD----STIAQQILSI 229
R +SGG +++V I + + +P LL +DEPT G+D + I Q I SI
Sbjct: 401 -----------ARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSI 449
|
Length = 510 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 9e-05
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 184 LTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL 233
L SGG ++R+ I + ++ +P L+F+DEPT GLD ++ ++L +L L
Sbjct: 148 LPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGL 197
|
Length = 258 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 42/205 (20%), Positives = 100/205 (48%), Gaps = 14/205 (6%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP-------FSNQM 119
+K ++ ++ G+ LA++G +G GK+TL L G + +G + + P + +Q
Sbjct: 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQR 88
Query: 120 TRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSL 179
R F L+P +++ + F L+L +++ K + ++GL S
Sbjct: 89 IRMI-FQDPSTSLNPRQRISQILDFP--LRLNTDLEPEQREKQIIETLRQVGLLPDHASY 145
Query: 180 IGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRT 239
L + G+++R+ + + +++ P ++ DE + LD ++ Q+++++L+L
Sbjct: 146 YPHML----APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGI 201
Query: 240 IVMTIHQPSNMLYYMFHKVLLLSEG 264
+ + Q M+ ++ +VL++ +G
Sbjct: 202 SYIYVTQHLGMMKHISDQVLVMHQG 226
|
Length = 267 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 2e-04
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 76 PGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITY 110
PGE++ ++GP G GKTTL AL LG G + Y
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIY 35
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 53/201 (26%), Positives = 95/201 (47%), Gaps = 30/201 (14%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTT---LLTALGGRLGRIN-GRITYNG---KPF 115
E L+ I + G+ +A++G SG GK+T LLT R I+ G I +G + +
Sbjct: 355 EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLT----RFYDIDEGEILLDGHDLRDY 410
Query: 116 SNQMTRNTGFVTQEDVLSPYL---TVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGL 172
+ RN + ++V +L T+ + + ++ ++ + A +
Sbjct: 411 TLASLRNQVALVSQNV---HLFNDTIANNIAYAR----TEQYSREQIEEAARMAYAMDFI 463
Query: 173 SECKNSL---IGGPLTRGV--SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQIL 227
++ N L IG GV SGG+R+R++I + +L + +L LDE TS LD+ + I
Sbjct: 464 NKMDNGLDTVIG---ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ 520
Query: 228 SILLKLANGGRTIVMTIHQPS 248
+ L +L RT ++ H+ S
Sbjct: 521 AALDELQK-NRTSLVIAHRLS 540
|
Length = 582 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 25/168 (14%)
Query: 80 LAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVT 139
+AM+GP+G GK+T+L + G L +G + F + R F +Q V L+
Sbjct: 538 IAMVGPNGIGKSTILKLISGELQPSSGTV------FRSAKVRMAVF-SQHHVDGLDLSSN 590
Query: 140 ETMVFTALLQLPNSF--TEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVS 197
LL + F ++K++ A + G++ +L P+ +SGG++ RV+
Sbjct: 591 ------PLLYMMRCFPGVPEQKLR---AHLGSFGVT---GNLALQPMYT-LSGGQKSRVA 637
Query: 198 IGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIH 245
+ P +L LDEP++ LD + ++ L+ L GG ++M H
Sbjct: 638 FAKITFKKPHILLLDEPSNHLDLDAVEALIQGLV-LFQGG--VLMVSH 682
|
Length = 718 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 189 SGGERKRVSIG-----QEILINPS---LLFLDEPTSGLDSTIAQQILSILLKLANGGRTI 240
SGGER S+ ++L + LLFLDEP LD +++ IL +L + GR I
Sbjct: 817 SGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQI 876
Query: 241 VMTIH 245
++ H
Sbjct: 877 IIISH 881
|
Length = 908 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 180 IGGPLTRGVSGGERKRVSIGQEIL---INPSLLFLDEPTSGLDSTIAQQILSILLKLANG 236
+G P T +SGGE +R+ + +E+ +L LDEPT+GL +++L +L +L +
Sbjct: 823 LGQPATT-LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDK 881
Query: 237 GRTIVMTIH 245
G T+V+ H
Sbjct: 882 GNTVVVIEH 890
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 4e-04
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 33/143 (23%)
Query: 108 ITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVM 167
+ Y GK + DVL +TV E + F F KI +
Sbjct: 118 VRYKGK-------------SIADVLD--MTVEEALEF---------FENIPKIARKLQTL 153
Query: 168 TELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPS----LLFLDEPTSGLDSTIA 223
++GL K +G P T +SGGE +R+ + +E L S L LDEPT+GL
Sbjct: 154 CDVGLGYIK---LGQPATT-LSGGEAQRIKLAKE-LSKRSTGKTLYILDEPTTGLHFHDV 208
Query: 224 QQILSILLKLANGGRTIVMTIHQ 246
+++L +L +L + G T+V+ H
Sbjct: 209 KKLLEVLQRLVDKGNTVVVIEHN 231
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 46/180 (25%), Positives = 83/180 (46%), Gaps = 31/180 (17%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP---FSNQ 118
++ +L+ I V +A++G +G GK+TL + L G G I +G+P S+
Sbjct: 352 DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHS 411
Query: 119 MTRNTGFVTQED--VL--SPYLTVT------ETMVFTALLQLPNSFTEKEKIKCAEAVMT 168
+ R + Q+D VL + VT E V+ AL E ++ AE
Sbjct: 412 VLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQAL----------ETVQLAELAR- 460
Query: 169 ELGLSECKNSLIGGPLTRG--VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQI 226
L + + +G +G +S G+++ +++ + ++ P +L LDE T+ +DS Q I
Sbjct: 461 --SLPDGLYTPLG---EQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAI 515
|
Length = 592 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 48/200 (24%), Positives = 83/200 (41%), Gaps = 53/200 (26%)
Query: 74 VKPGEMLAMLGPSGCGKTTLLTALGGR----LGRINGRITYNGKPFSNQMTRNTGFVTQE 129
+PG+++ +LGP+G GK+T L L G LGR Y P + +
Sbjct: 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGR------YEDPP------------SWD 138
Query: 130 DVLSPYLTVTETMVFTALLQ--------------LPNSF--TEKEKIKCA------EAVM 167
+V+ + F L + +P E +K + V+
Sbjct: 139 EVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVV 198
Query: 168 TELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQI- 226
LGL + + +SGGE +RV+I +L + + F DEP+S LD I Q++
Sbjct: 199 ERLGLENVLDRDV-----SELSGGELQRVAIAAALLRDADVYFFDEPSSYLD--IRQRLN 251
Query: 227 -LSILLKLANGGRTIVMTIH 245
++ +LA G+ +++ H
Sbjct: 252 AARVIRELAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 5e-04
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLD 219
T+ SGG R R+++ + + I P LL LDEPT+ LD
Sbjct: 342 TKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLD 376
|
Length = 718 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 315 EQKMLEKEIPSGMYRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLF 374
E ++ E+ + SG+ Y + +I+ DL LV + I + GL N L
Sbjct: 122 ESRIKERLLVSGV-SPLKYLLGKILGDL---LVGLIQLLIILLLLFGLGIPFGNLLLLLL 177
Query: 375 VLLFSVLVSQGLGLAIGAMVMEQKSATILGSIIM--QLFVLAGGYYVQNVPSFIAWI 429
+ L L LG +G++ ++A ++ SI++ G + + N+PSF+ WI
Sbjct: 178 LFLLYGLAYIALGALLGSLFKNSEAAILVISILILLLSGFFGGLFPLPNMPSFLQWI 234
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 12/179 (6%)
Query: 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP--FSNQ---MTRNTGFVTQ 128
V+P + A++G +G GK+TLL L G + +G I + GK F + + V Q
Sbjct: 21 VRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQ 80
Query: 129 EDVLSPYLTVTETMVFTALLQLPNSFTEKEKI-KCAEAVMTELGLSECKNSLIGGPLTRG 187
E L +V + M + F +++K+ + +A+ EL + + + T
Sbjct: 81 ELNLVLQRSVMDNM-WLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVA---TLS 136
Query: 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQ 246
VS + + + I + N ++ +DEPTS L + +I+ KL G IV H+
Sbjct: 137 VS--QMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHK 193
|
Length = 491 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 51/210 (24%), Positives = 81/210 (38%), Gaps = 61/210 (29%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLL---------------TALGGRLGR---- 103
++ IL ++ V PGE ++GP+G GK+TLL T G R G
Sbjct: 272 DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETI 331
Query: 104 --INGRITYNGKPFSNQM---------TRN---TGFVTQEDVLSPYLTVTETMVFTALLQ 149
I I Y S+ + RN +GF D + Y V++ +
Sbjct: 332 WDIKKHIGY----VSSSLHLDYRVSTSVRNVILSGFF---DSIGIYQAVSD-----RQQK 379
Query: 150 LPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLL 209
L A+ + LG+ P +S G+++ I + ++ +P+LL
Sbjct: 380 L------------AQQWLDILGID---KRTADAPF-HSLSWGQQRLALIVRALVKHPTLL 423
Query: 210 FLDEPTSGLDSTIAQQILSILLKLANGGRT 239
LDEP GLD Q + + L + G T
Sbjct: 424 ILDEPLQGLDPLNRQLVRRFVDVLISEGET 453
|
Length = 490 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.002
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 187 GVSGGERKRVSIG---QEILINP-SLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVM 242
+SGGE++ ++ + P L LDE GLD Q + +L+ G +++
Sbjct: 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIV 136
Query: 243 TIHQP 247
H P
Sbjct: 137 ITHLP 141
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 38.3 bits (89), Expect = 0.003
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQP 247
+SGGE +RV+I +L N + DEP++ LD + +L+ G+ + +
Sbjct: 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD 131
Query: 248 SNMLYYMFHKVLLLSEGYPLYSGEAS 273
+L Y+ ++ + EG P G AS
Sbjct: 132 LAVLDYLSDRIHVF-EGEPGVYGIAS 156
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 508 | |||
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 100.0 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 100.0 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.98 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.97 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.97 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.97 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.97 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.97 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.96 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.96 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.95 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.95 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.95 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.95 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.95 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.95 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.94 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.94 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.94 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.93 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.93 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.92 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.92 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.92 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.91 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.89 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.89 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.89 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.87 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.87 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.86 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.86 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.86 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.84 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.83 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.83 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.82 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.82 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.81 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.81 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.8 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.8 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.78 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.77 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.76 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.75 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.74 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.73 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.68 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.67 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.67 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.57 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.56 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.52 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.51 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.49 | |
| PF01061 | 210 | ABC2_membrane: ABC-2 type transporter; InterPro: I | 99.49 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.49 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.48 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.45 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.43 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.42 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.37 | |
| TIGR03062 | 208 | pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa | 99.36 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.34 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.33 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.33 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 99.31 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.31 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.3 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.3 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.28 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.26 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.24 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.24 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.22 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 99.17 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.16 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 99.14 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 99.12 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 99.12 | |
| TIGR01247 | 236 | drrB daunorubicin resistance ABC transporter membr | 99.12 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 99.11 | |
| TIGR00025 | 232 | Mtu_efflux ABC transporter efflux protein, DrrB fa | 99.08 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.06 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.03 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 99.0 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 99.0 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.97 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.97 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.95 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.94 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.88 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.86 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.86 | |
| TIGR01291 | 253 | nodJ ABC-2 type transporter, NodJ family. Nearly a | 98.85 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.82 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.76 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.74 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.73 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.7 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.69 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.68 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.67 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.62 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 98.61 | |
| TIGR01248 | 152 | drrC daunorubicin resistance protein C. The model | 98.55 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.55 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.54 | |
| PRK15066 | 257 | inner membrane transport permease; Provisional | 98.53 | |
| TIGR03861 | 253 | phenyl_ABC_PedC alcohol ABC transporter, permease | 98.53 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.52 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.52 | |
| COG0842 | 286 | ABC-type multidrug transport system, permease comp | 98.5 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.46 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.45 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.4 | |
| PRK13873 | 811 | conjugal transfer ATPase TrbE; Provisional | 98.33 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 98.31 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 98.31 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.29 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 98.27 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.26 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.24 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 98.23 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 98.23 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.22 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.2 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.19 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 98.19 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 98.17 | |
| PF13558 | 90 | SbcCD_C: Putative exonuclease SbcCD, C subunit; PD | 98.16 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.1 | |
| PF00488 | 235 | MutS_V: MutS domain V C-terminus.; InterPro: IPR00 | 98.1 |
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-100 Score=838.67 Aligned_cols=462 Identities=44% Similarity=0.766 Sum_probs=426.7
Q ss_pred CceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC---CcccEEEEC
Q 010509 35 HPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG---RINGRITYN 111 (508)
Q Consensus 35 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~---~~~G~I~~~ 111 (508)
.++.++|+|+++..+.+. .+.+++|+|||++++|||++||||||||||||||++|+|+.. ..+|+|++|
T Consensus 22 ~~~~~~~~~~~~~~~~~~--------~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKS--------KKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCC--------CccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 467899999999876321 135899999999999999999999999999999999999984 589999999
Q ss_pred CEeCCh-hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 112 GKPFSN-QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 112 G~~~~~-~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
|++... .+++.+|||.|||.++|+|||+|++.|+|.+|+|+..++++++++|+++++++||.+++|+++|+...|++||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 977654 6788999999999999999999999999999999988999999999999999999999999999988899999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||||||+||.+|++||+||+|||||||||+.++.++++.|+++|++|+|||+|+|||+.+++++||++++|++|+++|+|
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHhcCCCCCCCCChHHHHHHhhcCC---------------------CC-----------------------C
Q 010509 271 EASGAMNYFASIGYCPSVPTNPSDFLLDLASGM---------------------PS-----------------------N 306 (508)
Q Consensus 271 ~~~~~~~~f~~~g~~~p~~~npad~~~~~~~~~---------------------~~-----------------------~ 306 (508)
+++++.+||+++|++||++.||+||++|+++.+ .. .
T Consensus 254 ~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (613)
T KOG0061|consen 254 SPRELLEFFSSLGFPCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLEALEKSLSTSKKVEIGTS 333 (613)
T ss_pred CHHHHHHHHHhCCCCCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHHHHhhhcccccccccccC
Confidence 999999999999999999999999999988732 00 1
Q ss_pred CCHHHHh-------------------------------------------------------------------------
Q 010509 307 GSWKEQA------------------------------------------------------------------------- 313 (508)
Q Consensus 307 ~~~~~q~------------------------------------------------------------------------- 313 (508)
.+|+.|+
T Consensus 334 ~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~ 413 (613)
T KOG0061|consen 334 PSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVFP 413 (613)
T ss_pred CcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhH
Confidence 3566665
Q ss_pred hhhhhhhhhcCCCCcChHHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010509 314 LEQKMLEKEIPSGMYRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLFSVLVSQGLGLAIGAM 393 (508)
Q Consensus 314 ~er~v~~rE~~~~~Y~~~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~ 393 (508)
.||++|.||+.+|+|+.++||+|++++++|+.++.+++|++|+|||+|+++++.+|++|++++++..++++++|+++|++
T Consensus 414 ~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~ 493 (613)
T KOG0061|consen 414 QERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAI 493 (613)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhccccC--CchhhHHHhhhhCHHHHHHHHHHHHHhCCCCcccCCCCC-CccccCCcccc
Q 010509 394 VMEQKSATILGSIIMQLFVLAGGYYVQ--NVPSFIAWIEYLSIGHHTYKLLLGSQYNYNETYPCGDSG-GLCLVGEHPTI 470 (508)
Q Consensus 394 ~~~~~~a~~~~~~~~~~~~l~~Gf~i~--~ip~~~~W~~yiS~~~y~~eal~~nef~~~~~~~c~~~~-~~c~~~~~~~~ 470 (508)
+|+...|++++++++++|++|+|||++ ++|.||+|++|+||++|+|||++.|||.+ ....|.... ..|...+...+
T Consensus 494 ~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~-~~~~~~~~~~~~~~~~~~~~l 572 (613)
T KOG0061|consen 494 VPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSG-GSSRCFLSGNLCCESTGEDVL 572 (613)
T ss_pred ccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhc-cccccccCcCCcccccHHHHH
Confidence 999999999999999999999999998 99999999999999999999999999997 466786433 34555555556
Q ss_pred eeeCC--CcchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010509 471 KKVGL--HRKYYSVIALAIMLVGYRLIAYIALMRIGA 505 (508)
Q Consensus 471 ~~~~~--~~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 505 (508)
...++ .+.|.|++++++++++|++++|++|++..+
T Consensus 573 ~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~ 609 (613)
T KOG0061|consen 573 KQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVK 609 (613)
T ss_pred HhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 66665 579999999999999999999999988443
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-98 Score=829.91 Aligned_cols=470 Identities=51% Similarity=0.862 Sum_probs=418.0
Q ss_pred CCCceeEEEEeEEEEEeccccc----------------cCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHH
Q 010509 33 AKHPVTLKFEDIVYKIKMKKGF----------------YGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTA 96 (508)
Q Consensus 33 ~~~~~~l~~~~l~~~~~~~~~~----------------~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~ 96 (508)
...++.+++.|++|+++..+.. ....++++++++|+|+|+++++||++||+||||||||||||+
T Consensus 34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~i 113 (659)
T PLN03211 34 SCYPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNA 113 (659)
T ss_pred CCCceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHH
Confidence 3457899999999998644200 001134556789999999999999999999999999999999
Q ss_pred HhcCCCCc--ccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 010509 97 LGGRLGRI--NGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE 174 (508)
Q Consensus 97 L~g~~~~~--~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~ 174 (508)
|+|+.++. +|+|.+||+++....++.+|||+|++.+++.+||+||+.+++.++.+...++++++++++++++.+||.+
T Consensus 114 LaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 193 (659)
T PLN03211 114 LAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTK 193 (659)
T ss_pred HhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh
Confidence 99998764 9999999999866556779999999999999999999999887776655566677788999999999999
Q ss_pred ccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhh
Q 010509 175 CKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYM 254 (508)
Q Consensus 175 ~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~ 254 (508)
++|+.+|+...++||||||||++||++|+.+|+||+|||||+|||+.++.++++.|++++++|+|||+++|||+.+++++
T Consensus 194 ~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~ 273 (659)
T PLN03211 194 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQM 273 (659)
T ss_pred hcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh
Confidence 99999999889999999999999999999999999999999999999999999999999988999999999998778899
Q ss_pred ccEEEEEeCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHHHhhcCCC------------------------------
Q 010509 255 FHKVLLLSEGYPLYSGEASGAMNYFASIGYCPSVPTNPSDFLLDLASGMP------------------------------ 304 (508)
Q Consensus 255 ~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~npad~~~~~~~~~~------------------------------ 304 (508)
||++++|++|++++.|+++++.+||+++|++||.+.|||||++|+++.+.
T Consensus 274 ~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 353 (659)
T PLN03211 274 FDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVK 353 (659)
T ss_pred hceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhccHHHH
Confidence 99999999999999999999999999999999999999999999865210
Q ss_pred ---------------------C---------CCCHHHHh-----------------------------------------
Q 010509 305 ---------------------S---------NGSWKEQA----------------------------------------- 313 (508)
Q Consensus 305 ---------------------~---------~~~~~~q~----------------------------------------- 313 (508)
. ..+|++|+
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i~~~ll~G~lf~~~~~~ 433 (659)
T PLN03211 354 AAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKERKHESFNTLRVFQVIAAALLAGLMWWHSDFR 433 (659)
T ss_pred HHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 0 03577775
Q ss_pred -----------------------------hhhhhhhhhcCCCCcChHHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCC
Q 010509 314 -----------------------------LEQKMLEKEIPSGMYRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKP 364 (508)
Q Consensus 314 -----------------------------~er~v~~rE~~~~~Y~~~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~ 364 (508)
.||++|+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++
T Consensus 434 ~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~ 513 (659)
T PLN03211 434 DVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKP 513 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcC
Confidence 899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCchhhHHHhhhhCHHHHHHHHHHH
Q 010509 365 TASNFFETLFVLLFSVLVSQGLGLAIGAMVMEQKSATILGSIIMQLFVLAGGYYVQNVPSFIAWIEYLSIGHHTYKLLLG 444 (508)
Q Consensus 365 ~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~ip~~~~W~~yiS~~~y~~eal~~ 444 (508)
++.+||+|++++++..++++++|+++|+++|+..+|+.+++++++++++||||++++||+||+|++|+||++|||||++.
T Consensus 514 ~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~~ip~~~~W~~ylS~~~y~~eal~~ 593 (659)
T PLN03211 514 ELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHKLPSCMAWIKYISTTFYSYRLLIN 593 (659)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHhhchHHHHHHHHhCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCC----cccCCCC----CCccccCCcccceeeCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010509 445 SQYNYNE----TYPCGDS----GGLCLVGEHPTIKKVGLHRKYYSVIALAIMLVGYRLIAYIALMRIGA 505 (508)
Q Consensus 445 nef~~~~----~~~c~~~----~~~c~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 505 (508)
|||++.+ .++|+.. ...|.+.+. ..++..+.|.++++|++++++|++++|++|+++++
T Consensus 594 nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~~ 659 (659)
T PLN03211 594 VQYGEGKRISSLLGCSLPHGSDRASCKFVEE---DVAGQISPATSVSVLIFMFVGYRLLAYLALRRIKH 659 (659)
T ss_pred HhcCCccccccccCCCCcccCCCCCCccchh---hhhcccchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9998643 2578632 123433222 22233468999999999999999999999998764
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-94 Score=797.39 Aligned_cols=462 Identities=35% Similarity=0.653 Sum_probs=414.0
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC---cccEEEECCE
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR---INGRITYNGK 113 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~---~~G~I~~~G~ 113 (508)
..+++.++. +++.. .+. ++.+++.+|+|+|++++|||+++|+|||||||||||++|+|+.++ .+|+|.+||+
T Consensus 16 ~~~~~~~~~-~~~~~--~~~--~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~ 90 (617)
T TIGR00955 16 QDGSWKQLV-SRLRG--CFC--RERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGM 90 (617)
T ss_pred ccchhhhhh-hhccc--ccc--cccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCE
Confidence 356666665 43321 111 123457899999999999999999999999999999999999866 3899999999
Q ss_pred eCCh-hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCC-CCCccCHH
Q 010509 114 PFSN-QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGP-LTRGVSGG 191 (508)
Q Consensus 114 ~~~~-~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~-~~~~LSGG 191 (508)
+++. ..++.+|||+|+|.+++.+||+||+.|++.++.+...++++++++++++++.+||.+++|+.+|++ ..++||||
T Consensus 91 ~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgG 170 (617)
T TIGR00955 91 PIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGG 170 (617)
T ss_pred ECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcc
Confidence 9864 567789999999999999999999999999888776777888889999999999999999999975 36799999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
|||||+||++|+.+|++++|||||+|||+.++.++++.|++++++|+|||+++|||+.+++++||++++|++|+++|+|+
T Consensus 171 qrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~ 250 (617)
T TIGR00955 171 ERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGS 250 (617)
T ss_pred hhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECC
Confidence 99999999999999999999999999999999999999999998899999999999888999999999999999999999
Q ss_pred hhhHHHHHHhcCCCCCCCCChHHHHHHhhcCCCC-----------------------------------------C----
Q 010509 272 ASGAMNYFASIGYCPSVPTNPSDFLLDLASGMPS-----------------------------------------N---- 306 (508)
Q Consensus 272 ~~~~~~~f~~~g~~~p~~~npad~~~~~~~~~~~-----------------------------------------~---- 306 (508)
++++.+||+++|++||++.|||||++++++.+.. +
T Consensus 251 ~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (617)
T TIGR00955 251 PDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENM 330 (617)
T ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccc
Confidence 9999999999999999999999999998752110 0
Q ss_pred ------CCHHHHh-------------------------------------------------------------------
Q 010509 307 ------GSWKEQA------------------------------------------------------------------- 313 (508)
Q Consensus 307 ------~~~~~q~------------------------------------------------------------------- 313 (508)
.+|+.|+
T Consensus 331 ~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~ 410 (617)
T TIGR00955 331 EGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFP 410 (617)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2455554
Q ss_pred ------hhhhhhhhhcCCCCcChHHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 010509 314 ------LEQKMLEKEIPSGMYRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLFSVLVSQGLG 387 (508)
Q Consensus 314 ------~er~v~~rE~~~~~Y~~~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~ 387 (508)
.||++|+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+||.|+++++++.++++++|
T Consensus 411 ~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~ 490 (617)
T TIGR00955 411 VINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFG 490 (617)
T ss_pred HHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhhccccC--CchhhHHHhhhhCHHHHHHHHHHHHHhCCCCcccCCCC--CCccc
Q 010509 388 LAIGAMVMEQKSATILGSIIMQLFVLAGGYYVQ--NVPSFIAWIEYLSIGHHTYKLLLGSQYNYNETYPCGDS--GGLCL 463 (508)
Q Consensus 388 ~~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~--~ip~~~~W~~yiS~~~y~~eal~~nef~~~~~~~c~~~--~~~c~ 463 (508)
+++++++|+..+|+.+++++++++++|+||+++ +||+||+|++|+||++|++||++.|||.+....+|.+. ++.|.
T Consensus 491 ~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~ 570 (617)
T TIGR00955 491 YLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCP 570 (617)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCC
Confidence 999999999999999999999999999999998 99999999999999999999999999988644478642 34587
Q ss_pred cCCcccceeeCCC--cchhHHHHHHHHHHHHHHHHHHHHHhh
Q 010509 464 VGEHPTIKKVGLH--RKYYSVIALAIMLVGYRLIAYIALMRI 503 (508)
Q Consensus 464 ~~~~~~~~~~~~~--~~~~~~~il~~~~~~~~~~~~~~l~~~ 503 (508)
..+...++.+|++ +.|.++++++++.++|++++|++|++.
T Consensus 571 ~~g~~~l~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 571 SSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred cChHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665566777764 689999999999999999999999883
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-90 Score=817.48 Aligned_cols=473 Identities=29% Similarity=0.481 Sum_probs=413.8
Q ss_pred CceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC--CcccEEEECC
Q 010509 35 HPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG--RINGRITYNG 112 (508)
Q Consensus 35 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~--~~~G~I~~~G 112 (508)
.+..++|+||+|.++.+........+.+++++|+|||++++|||++||+||||||||||||+|+|+.+ +.+|+|.+||
T Consensus 864 ~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG 943 (1470)
T PLN03140 864 TPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG 943 (1470)
T ss_pred CcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECC
Confidence 35689999999999754321111112235689999999999999999999999999999999999975 4799999999
Q ss_pred EeCCh-hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 113 KPFSN-QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 113 ~~~~~-~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
++..+ ..++.+|||+|+|.+++.+||+|++.|++.++.+...+++++.++++++++.+||.+++|+.+|++.+++||||
T Consensus 944 ~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgG 1023 (1470)
T PLN03140 944 FPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTE 1023 (1470)
T ss_pred ccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHH
Confidence 98754 45678999999999999999999999998888766666677778899999999999999999998777899999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC-CeEEEEc
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE-GYPLYSG 270 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~-G~iv~~G 270 (508)
|||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++ |+++|+|
T Consensus 1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G 1103 (1470)
T PLN03140 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSG 1103 (1470)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEEC
Confidence 999999999999999999999999999999999999999999988999999999999778899999999996 8999999
Q ss_pred Ch----hhHHHHHHhc-CC-CCCCCCChHHHHHHhhcCCCC-----C---------------------------------
Q 010509 271 EA----SGAMNYFASI-GY-CPSVPTNPSDFLLDLASGMPS-----N--------------------------------- 306 (508)
Q Consensus 271 ~~----~~~~~~f~~~-g~-~~p~~~npad~~~~~~~~~~~-----~--------------------------------- 306 (508)
++ +++.+||+++ |+ +||+..|||||++|+++.... |
T Consensus 1104 ~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 1183 (1470)
T PLN03140 1104 PLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYF 1183 (1470)
T ss_pred CcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCcccccc
Confidence 96 5899999997 66 499999999999998652100 0
Q ss_pred -----CCHHHHh--------------------------------------------------------------------
Q 010509 307 -----GSWKEQA-------------------------------------------------------------------- 313 (508)
Q Consensus 307 -----~~~~~q~-------------------------------------------------------------------- 313 (508)
.+|++|+
T Consensus 1184 ~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 1263 (1470)
T PLN03140 1184 ATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNC 1263 (1470)
T ss_pred CccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3455554
Q ss_pred --------hhhhhhhhhcCCCCcChHHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 010509 314 --------LEQKMLEKEIPSGMYRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLFSVLVSQG 385 (508)
Q Consensus 314 --------~er~v~~rE~~~~~Y~~~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s 385 (508)
.||++|+||+++|+|++.+|++|++++|+|+.++.+++|++|+|||+||++++.+||+|+++++++.+++++
T Consensus 1264 ~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~ 1343 (1470)
T PLN03140 1264 STVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTY 1343 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccC--CchhhHHHhhhhCHHHHHHHHHHHHHhCCCCcccCCCCCCccc
Q 010509 386 LGLAIGAMVMEQKSATILGSIIMQLFVLAGGYYVQ--NVPSFIAWIEYLSIGHHTYKLLLGSQYNYNETYPCGDSGGLCL 463 (508)
Q Consensus 386 ~~~~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~--~ip~~~~W~~yiS~~~y~~eal~~nef~~~~~~~c~~~~~~c~ 463 (508)
+|+++++++|+.++|+.++++++.++++|+||++| +||+||+|++|+||++|+++|++.|||++. ...|+..+....
T Consensus 1344 ~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~-~~~~~~~~~~~~ 1422 (1470)
T PLN03140 1344 YGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDV-EDTIKVPGGAPD 1422 (1470)
T ss_pred HHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCC-CCcccCCCCCCC
Confidence 99999999999999999999999999999999998 999999999999999999999999999886 455542111000
Q ss_pred c-CCcccceeeCC--CcchhHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 010509 464 V-GEHPTIKKVGL--HRKYYSVIALAIMLVGYRLIAYIALMRIGATRN 508 (508)
Q Consensus 464 ~-~~~~~~~~~~~--~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~~ 508 (508)
. .+....+.+|+ ++.|++++++++++++|++++++++++++++|.
T Consensus 1423 ~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1423 PTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred CcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 0 01112456666 457999999999999999999999999988764
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-90 Score=818.29 Aligned_cols=469 Identities=28% Similarity=0.420 Sum_probs=411.2
Q ss_pred CceeEEEEeEEEEEeccccccC-------------------cccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHH
Q 010509 35 HPVTLKFEDIVYKIKMKKGFYG-------------------SNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLT 95 (508)
Q Consensus 35 ~~~~l~~~~l~~~~~~~~~~~~-------------------~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~ 95 (508)
+.+.+.|+||+++.......+. ..++..++++|+|+|+.+++||+++|+||||||||||||
T Consensus 26 ~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk 105 (1394)
T TIGR00956 26 YKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK 105 (1394)
T ss_pred CeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 3678999999987632211100 012234578999999999999999999999999999999
Q ss_pred HHhcCC----CCcccEEEECCEeCCh---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC----CCCHHHHHHH-H
Q 010509 96 ALGGRL----GRINGRITYNGKPFSN---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPN----SFTEKEKIKC-A 163 (508)
Q Consensus 96 ~L~g~~----~~~~G~I~~~G~~~~~---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~----~~~~~~~~~~-v 163 (508)
+|+|+. .+++|+|.+||+++.+ ..++.++||+|+|.++|.+||+||+.|++.++.|. ..+++++.++ +
T Consensus 106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1394)
T TIGR00956 106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIA 185 (1394)
T ss_pred HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 999986 4689999999998743 34567999999999999999999999998877543 2344554444 5
Q ss_pred HHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEE
Q 010509 164 EAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVM 242 (508)
Q Consensus 164 ~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~ 242 (508)
+++++.+||++++|+++|+..+++|||||||||+||++|+.+|++++|||||+|||+.++.++++.|++++++ |+|||+
T Consensus 186 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii 265 (1394)
T TIGR00956 186 DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLV 265 (1394)
T ss_pred HHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 7799999999999999999999999999999999999999999999999999999999999999999999874 999999
Q ss_pred EecCcchHHHhhccEEEEEeCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHHHhhcCCC-----------C------
Q 010509 243 TIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNYFASIGYCPSVPTNPSDFLLDLASGMP-----------S------ 305 (508)
Q Consensus 243 s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~npad~~~~~~~~~~-----------~------ 305 (508)
++|||++.++++||++++|++|+++|+|+++++.+||+++||+||+++|||||++++++.+. +
T Consensus 266 ~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~ 345 (1394)
T TIGR00956 266 AIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEF 345 (1394)
T ss_pred EecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhhccccccccCCCCHHHH
Confidence 99999888999999999999999999999999999999999999999999999999865210 0
Q ss_pred ---------------------------------------------------CCCHHHHh---------------------
Q 010509 306 ---------------------------------------------------NGSWKEQA--------------------- 313 (508)
Q Consensus 306 ---------------------------------------------------~~~~~~q~--------------------- 313 (508)
..+|++|+
T Consensus 346 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r 425 (1394)
T TIGR00956 346 ETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFM 425 (1394)
T ss_pred HHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 02355664
Q ss_pred ---------------------------------------------------hhhhhhhhhcCCCCcChHHHHHHHHHHHh
Q 010509 314 ---------------------------------------------------LEQKMLEKEIPSGMYRLSAYFMSRIISDL 342 (508)
Q Consensus 314 ---------------------------------------------------~er~v~~rE~~~~~Y~~~~y~~a~~l~~l 342 (508)
.||+||+||+.+++|++++|++|++++|+
T Consensus 426 ~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~i 505 (1394)
T TIGR00956 426 VFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEI 505 (1394)
T ss_pred HHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHH
Confidence 79999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccC--
Q 010509 343 PIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLFSVLVSQGLGLAIGAMVMEQKSATILGSIIMQLFVLAGGYYVQ-- 420 (508)
Q Consensus 343 p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~-- 420 (508)
|+.++.+++|++|+|||+||++++.+||+|+++++++.++++++++++|+++|+..+|+.+++++++++++|+||++|
T Consensus 506 P~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~ 585 (1394)
T TIGR00956 506 PFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRP 585 (1394)
T ss_pred HHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CchhhHHHhhhhCHHHHHHHHHHHHHhCCCCcccCCC-------------CCCccccCC----------cccce-eeCC-
Q 010509 421 NVPSFIAWIEYLSIGHHTYKLLLGSQYNYNETYPCGD-------------SGGLCLVGE----------HPTIK-KVGL- 475 (508)
Q Consensus 421 ~ip~~~~W~~yiS~~~y~~eal~~nef~~~~~~~c~~-------------~~~~c~~~~----------~~~~~-~~~~- 475 (508)
+||+||+|++|+||++|||||++.|||++. .++|.. .+..|...+ ...+. .+++
T Consensus 586 ~mp~~~~W~~yisp~~yafeal~~nef~~~-~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~ 664 (1394)
T TIGR00956 586 SMLGWSKWIYYVNPLAYAFESLMVNEFHGR-RFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYY 664 (1394)
T ss_pred hccHHHHHHHHcCHHHHHHHHHHHhhhcCC-cccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcc
Confidence 999999999999999999999999999986 789951 134575321 11222 3444
Q ss_pred -CcchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 010509 476 -HRKYYSVIALAIMLVGYRLIAYIALMRIG 504 (508)
Q Consensus 476 -~~~~~~~~il~~~~~~~~~~~~~~l~~~~ 504 (508)
.+.|+|++++++++++|++++++++++++
T Consensus 665 ~~~~w~n~gil~~~~v~f~~~~~l~l~~~~ 694 (1394)
T TIGR00956 665 NSHKWRNFGIIIGFTVFFFFVYILLTEFNK 694 (1394)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 47899999999999999999999999876
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-90 Score=814.02 Aligned_cols=468 Identities=26% Similarity=0.432 Sum_probs=404.4
Q ss_pred CceeEEEEeEEEEEeccccc----------------c----C--cccccccceeeeceEEEEeCCeEEEEECCCCCcHHH
Q 010509 35 HPVTLKFEDIVYKIKMKKGF----------------Y----G--SNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTT 92 (508)
Q Consensus 35 ~~~~l~~~~l~~~~~~~~~~----------------~----~--~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKST 92 (508)
+.+.++|+||++........ . + .++ ..+++||+|+|+.++|||+++|+|||||||||
T Consensus 128 ~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k-~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKST 206 (1470)
T PLN03140 128 PTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAK-KTKLTILKDASGIIKPSRMTLLLGPPSSGKTT 206 (1470)
T ss_pred CCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCC-CccceeccCCeEEEeCCeEEEEEcCCCCCHHH
Confidence 45679999999876521100 0 0 012 23578999999999999999999999999999
Q ss_pred HHHHHhcCCCCc---ccEEEECCEeCCh-hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC-------CCCHHHH--
Q 010509 93 LLTALGGRLGRI---NGRITYNGKPFSN-QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPN-------SFTEKEK-- 159 (508)
Q Consensus 93 LL~~L~g~~~~~---~G~I~~~G~~~~~-~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~-------~~~~~~~-- 159 (508)
|||+|+|+++++ +|+|.+||+++.+ ..++.++||+|+|.+++.+||+||+.|++.++.+. ..+++++
T Consensus 207 LLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~ 286 (1470)
T PLN03140 207 LLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDA 286 (1470)
T ss_pred HHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhc
Confidence 999999999877 9999999998854 33678999999999999999999999998765321 1112221
Q ss_pred ----------------------HHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 010509 160 ----------------------IKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSG 217 (508)
Q Consensus 160 ----------------------~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsg 217 (508)
+..++++++.+||++++||.+|+..+++|||||||||+||++|+.+|++++|||||+|
T Consensus 287 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsG 366 (1470)
T PLN03140 287 GIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTG 366 (1470)
T ss_pred cCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcC
Confidence 1235789999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHH
Q 010509 218 LDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNYFASIGYCPSVPTNPSDFL 296 (508)
Q Consensus 218 LD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~npad~~ 296 (508)
||+.++.++++.|+++++ .|+|+|+++|||+++++++||+|++|++|+++|+|+++++.+||+++||.||+++|||||+
T Consensus 367 LDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl 446 (1470)
T PLN03140 367 LDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFL 446 (1470)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHH
Confidence 999999999999999987 5999999999998889999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCC----------C----C-----------------------------------------CCHHHHh--------
Q 010509 297 LDLASGMP----------S----N-----------------------------------------GSWKEQA-------- 313 (508)
Q Consensus 297 ~~~~~~~~----------~----~-----------------------------------------~~~~~q~-------- 313 (508)
+++++... + . .++++|+
T Consensus 447 ~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~ 526 (1470)
T PLN03140 447 QEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEW 526 (1470)
T ss_pred HHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHH
Confidence 99876311 0 0 1233332
Q ss_pred -------------------------------------------------------------------hhhhhhhhhcCCC
Q 010509 314 -------------------------------------------------------------------LEQKMLEKEIPSG 326 (508)
Q Consensus 314 -------------------------------------------------------------------~er~v~~rE~~~~ 326 (508)
.+|+||+|||.++
T Consensus 527 ~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~ 606 (1470)
T PLN03140 527 LLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLL 606 (1470)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhcc
Confidence 7999999999999
Q ss_pred CcChHHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010509 327 MYRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLFSVLVSQGLGLAIGAMVMEQKSATILGSI 406 (508)
Q Consensus 327 ~Y~~~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~ 406 (508)
+|++++|++|++++|+|+.++.+++|++|+|||+||++++.+||+|+++++++.+++++++++++++++++.+|+.++++
T Consensus 607 ~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~ 686 (1470)
T PLN03140 607 FHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGAL 686 (1470)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccC--CchhhHHHhhhhCHHHHHHHHHHHHHhCCCCcccCCCCCCccccCCcccceeeCCC----cchh
Q 010509 407 IMQLFVLAGGYYVQ--NVPSFIAWIEYLSIGHHTYKLLLGSQYNYNETYPCGDSGGLCLVGEHPTIKKVGLH----RKYY 480 (508)
Q Consensus 407 ~~~~~~l~~Gf~i~--~ip~~~~W~~yiS~~~y~~eal~~nef~~~~~~~c~~~~~~c~~~~~~~~~~~~~~----~~~~ 480 (508)
+++++++|+||+++ +||+||+|++|+||++|||||++.|||.+. .+.|......+...+...++.+|+. ..|+
T Consensus 687 ~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~-~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~ 765 (1470)
T PLN03140 687 VLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAP-RWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWI 765 (1470)
T ss_pred HHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCc-cccCcccCCCCcccHHHHHHhcCcCccccchhh
Confidence 99999999999998 999999999999999999999999999764 3321100011223333456666653 3589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 010509 481 SVIALAIMLVGYRLIAYIALMRIG 504 (508)
Q Consensus 481 ~~~il~~~~~~~~~~~~~~l~~~~ 504 (508)
++++|++++++|+++++++|++++
T Consensus 766 ~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 766 GVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999866
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-87 Score=794.83 Aligned_cols=458 Identities=29% Similarity=0.480 Sum_probs=403.8
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC---CcccEEEECCE
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG---RINGRITYNGK 113 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~---~~~G~I~~~G~ 113 (508)
..++|+||+++++.+ .+++.+|+|||++++|||++||+||||||||||||+|+|+.+ +++|+|.+||+
T Consensus 758 ~~l~~~nl~~~~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~ 828 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGR 828 (1394)
T ss_pred ceEEEEeeEEEecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCE
Confidence 458999999987521 124689999999999999999999999999999999999986 68899999999
Q ss_pred eCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 114 PFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 114 ~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
++....++.+|||+|+|.+++.+||+|++.|++.++.|...++++++++++++++.+||.+++|+.+|+. ..+||||||
T Consensus 829 ~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~-~~~LSgGqr 907 (1394)
T TIGR00956 829 PLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVP-GEGLNVEQR 907 (1394)
T ss_pred ECChhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCC-CCCCCHHHh
Confidence 9866677889999999999999999999999998887666667777889999999999999999999843 348999999
Q ss_pred HHHHHHHHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCC-eEEEEcC
Q 010509 194 KRVSIGQEILINPS-LLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG-YPLYSGE 271 (508)
Q Consensus 194 qRv~Ia~aL~~~P~-illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G-~iv~~G~ 271 (508)
|||+||+||+.+|+ ||||||||||||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++| +++|+|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 999999999999999999999999999889999999999997778889999999987 9999999
Q ss_pred h----hhHHHHHHhcCC-CCCCCCChHHHHHHhhcCCCC-----------------------------------------
Q 010509 272 A----SGAMNYFASIGY-CPSVPTNPSDFLLDLASGMPS----------------------------------------- 305 (508)
Q Consensus 272 ~----~~~~~~f~~~g~-~~p~~~npad~~~~~~~~~~~----------------------------------------- 305 (508)
+ +++.+||++.|+ +||++.|||||++|+++....
T Consensus 988 ~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1394)
T TIGR00956 988 LGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPD 1067 (1394)
T ss_pred cccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccc
Confidence 7 578999999996 999999999999998642100
Q ss_pred -----CCCHHHHh-------------------------------------------------------------------
Q 010509 306 -----NGSWKEQA------------------------------------------------------------------- 313 (508)
Q Consensus 306 -----~~~~~~q~------------------------------------------------------------------- 313 (508)
..+|++|+
T Consensus 1068 ~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~~~~~ 1147 (1394)
T TIGR00956 1068 ALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLIQQY 1147 (1394)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 04566665
Q ss_pred -----hhhhhh-hhhcCCCCcChHHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCCCHHH-------HHHHHHHHHHHH
Q 010509 314 -----LEQKML-EKEIPSGMYRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASN-------FFETLFVLLFSV 380 (508)
Q Consensus 314 -----~er~v~-~rE~~~~~Y~~~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~-------f~~f~~~~~l~~ 380 (508)
.||.+| +||+++|+|++.+|++|++++|+|+.++.+++|.+|+|||+||++++.. |++|++++++..
T Consensus 1148 ~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~ 1227 (1394)
T TIGR00956 1148 LPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFF 1227 (1394)
T ss_pred hhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHH
Confidence 567664 9999999999999999999999999999999999999999999988866 999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccC--CchhhHHHhhhhCHHHHHHHHHHHHHhCCCCcccCCCC
Q 010509 381 LVSQGLGLAIGAMVMEQKSATILGSIIMQLFVLAGGYYVQ--NVPSFIAWIEYLSIGHHTYKLLLGSQYNYNETYPCGDS 458 (508)
Q Consensus 381 ~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~--~ip~~~~W~~yiS~~~y~~eal~~nef~~~~~~~c~~~ 458 (508)
++++++|+++++++|+.++|+.++++++.++++|+||+++ +||.||+|++|+||++|+++|++.|||++. +++|.+.
T Consensus 1228 ~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~-~~~C~~~ 1306 (1394)
T TIGR00956 1228 LYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADV-PVTCKVK 1306 (1394)
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCC-eeecCcc
Confidence 9999999999999999999999999999999999999998 999999999999999999999999999986 7778642
Q ss_pred ---------CCccc---------------------------cC-CcccceeeC--CCcchhHHHHHHHHHHHHHHHHHHH
Q 010509 459 ---------GGLCL---------------------------VG-EHPTIKKVG--LHRKYYSVIALAIMLVGYRLIAYIA 499 (508)
Q Consensus 459 ---------~~~c~---------------------------~~-~~~~~~~~~--~~~~~~~~~il~~~~~~~~~~~~~~ 499 (508)
+..|. +. +...+..++ .++.|+|+++++++++++ ++++++
T Consensus 1307 e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~ 1385 (1394)
T TIGR00956 1307 ELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-IIATVF 1385 (1394)
T ss_pred ccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HHHHHh
Confidence 33342 21 111234444 457899999999999999 888888
Q ss_pred HHhhccc
Q 010509 500 LMRIGAT 506 (508)
Q Consensus 500 l~~~~~~ 506 (508)
|++..+.
T Consensus 1386 l~~~~r~ 1392 (1394)
T TIGR00956 1386 FYWLARV 1392 (1394)
T ss_pred hheEEEc
Confidence 8774433
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-85 Score=735.38 Aligned_cols=465 Identities=33% Similarity=0.528 Sum_probs=406.3
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC--CCcccEEEECCE
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL--GRINGRITYNGK 113 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~--~~~~G~I~~~G~ 113 (508)
+..++.+||.+.++.... -..+.+++++|+|||+.++||.++||||+||||||||||+||||. +..+|+|++||.
T Consensus 779 ~~~~~~~~V~~w~dl~~~---~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~ 855 (1391)
T KOG0065|consen 779 PLSLTFKDVFYWVDLPYE---MPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGF 855 (1391)
T ss_pred cccccccceEEEEeCCcc---ccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCe
Confidence 345566666655543311 112225689999999999999999999999999999999999996 578999999999
Q ss_pred eCC-hhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 114 PFS-NQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 114 ~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
+.+ +.++|.+|||.|+|.|.|.+||+|.|.|+|.+|+|...+.+++.+.||++++.++|++++|..||.+. +|||.+|
T Consensus 856 p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQ 934 (1391)
T KOG0065|consen 856 PKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQ 934 (1391)
T ss_pred eCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHH
Confidence 998 57899999999999999999999999999999999999999999999999999999999999999877 9999999
Q ss_pred HHHHHHHHHHhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe-CCeEEEEc
Q 010509 193 RKRVSIGQEILINP-SLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS-EGYPLYSG 270 (508)
Q Consensus 193 rqRv~Ia~aL~~~P-~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~-~G~iv~~G 270 (508)
|||++||.+|+.+| .||||||||||||+.++..|++.+|++++.|+||+||+|||+..+++.||++++|+ +|++||+|
T Consensus 935 RKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G 1014 (1391)
T KOG0065|consen 935 RKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFG 1014 (1391)
T ss_pred hceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEec
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999998 68999999
Q ss_pred Chhh----HHHHHHhcC-CCCCCCCChHHHHHHhhcCCCC-----C----------------------------------
Q 010509 271 EASG----AMNYFASIG-YCPSVPTNPSDFLLDLASGMPS-----N---------------------------------- 306 (508)
Q Consensus 271 ~~~~----~~~~f~~~g-~~~p~~~npad~~~~~~~~~~~-----~---------------------------------- 306 (508)
+..+ +++||+++| .+||+..|||||++|+++.... |
T Consensus 1015 ~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~ 1094 (1391)
T KOG0065|consen 1015 PLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEF 1094 (1391)
T ss_pred CcccccHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCccccc
Confidence 9864 677999976 8999999999999999763110 0
Q ss_pred -----CCHHHHh--------------------------------------------------------------------
Q 010509 307 -----GSWKEQA-------------------------------------------------------------------- 313 (508)
Q Consensus 307 -----~~~~~q~-------------------------------------------------------------------- 313 (508)
.|++.|+
T Consensus 1095 ~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~ 1174 (1391)
T KOG0065|consen 1095 KTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQ 1174 (1391)
T ss_pred ccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 4555554
Q ss_pred -----hhhhhhhhhcCCCCcChHHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 010509 314 -----LEQKMLEKEIPSGMYRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLFSVLVSQGLGL 388 (508)
Q Consensus 314 -----~er~v~~rE~~~~~Y~~~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~ 388 (508)
.||.+++||+++|+|+..+|++|++++|+|+.++++.+|.++.|+|+|+..++.+|++|++.+++..++.+.+|+
T Consensus 1175 ~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gm 1254 (1391)
T KOG0065|consen 1175 QPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGM 1254 (1391)
T ss_pred hhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhhccccC--CchhhHHHhhhhCHHHHHHHHHHHHHhCCCCcccCCCCCC------
Q 010509 389 AIGAMVMEQKSATILGSIIMQLFVLAGGYYVQ--NVPSFIAWIEYLSIGHHTYKLLLGSQYNYNETYPCGDSGG------ 460 (508)
Q Consensus 389 ~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~--~ip~~~~W~~yiS~~~y~~eal~~nef~~~~~~~c~~~~~------ 460 (508)
++.+++|+.++|+.+.+.++.++.+|+|+++| .||.||+|++|+||+.|..++++..++++. +..|...+.
T Consensus 1255 m~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~-~v~c~~~e~~~~~pp 1333 (1391)
T KOG0065|consen 1255 MLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDV-EVTCEDSEMNYFDPP 1333 (1391)
T ss_pred HHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCC-ceeeecCCccccCCC
Confidence 99999999999999999999999999999998 999999999999999999999999999975 778865332
Q ss_pred ---ccccCCcccceeeC----C--CcchhHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 010509 461 ---LCLVGEHPTIKKVG----L--HRKYYSVIALAIMLVGYRLIAYIALMRIGATRN 508 (508)
Q Consensus 461 ---~c~~~~~~~~~~~~----~--~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~~ 508 (508)
.|.. .....+| + +.......+.+++.+++..++.+..++.+..||
T Consensus 1334 ~g~tcge---~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1334 SGQTCGE---FMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred CCcCHHH---HHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence 2210 0011222 2 112223345566778888888888888776665
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-82 Score=707.87 Aligned_cols=443 Identities=33% Similarity=0.566 Sum_probs=398.3
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC---CcccEEEECCEeCChh-ccccEEEEecCCCCCCCCCH
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG---RINGRITYNGKPFSNQ-MTRNTGFVTQEDVLSPYLTV 138 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~---~~~G~I~~~G~~~~~~-~~~~i~yv~Q~~~l~~~lTv 138 (508)
..++|+|+|+-++|||++.++||+||||||||++|+|.++ ...|+|.+||.+.++. .++.++|+.|+|.|+|.|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 4579999999999999999999999999999999999763 3467999999998763 36789999999999999999
Q ss_pred HHHHHHHHHhcCCCC----CCHHHHHH-HHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeC
Q 010509 139 TETMVFTALLQLPNS----FTEKEKIK-CAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDE 213 (508)
Q Consensus 139 ~E~l~~~~~l~~~~~----~~~~~~~~-~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDE 213 (508)
+|+|.|+++++.+.. .+++++.+ ..+.+++.+||++|+||++||...|++||||||||++|.+++.+|+++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 999999999987732 33444333 5789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHHHHHHhcCCCCCCCCCh
Q 010509 214 PTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNYFASIGYCPSVPTNP 292 (508)
Q Consensus 214 PtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~np 292 (508)
+|+|||+.++.++++.||++++ .+.|.+++.|||+++++++||+|++|.+|+++|+||.+++++||+++||.||+++++
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ 366 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGT 366 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCH
Confidence 9999999999999999999987 489999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCC-------------------------------------------------------CCHHHHh----
Q 010509 293 SDFLLDLASGMPSN-------------------------------------------------------GSWKEQA---- 313 (508)
Q Consensus 293 ad~~~~~~~~~~~~-------------------------------------------------------~~~~~q~---- 313 (508)
|||+.++++...+. .+.|+|+
T Consensus 367 ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~ 446 (1391)
T KOG0065|consen 367 ADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACT 446 (1391)
T ss_pred HHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHH
Confidence 99999999832110 3444443
Q ss_pred ---------------------------------------------------------------------hhhhhhhhhcC
Q 010509 314 ---------------------------------------------------------------------LEQKMLEKEIP 324 (508)
Q Consensus 314 ---------------------------------------------------------------------~er~v~~rE~~ 324 (508)
+.||||+|||.
T Consensus 447 ~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~ 526 (1391)
T KOG0065|consen 447 IREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRD 526 (1391)
T ss_pred HHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhc
Confidence 78999999999
Q ss_pred CCCcChHHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 010509 325 SGMYRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLFSVLVSQGLGLAIGAMVMEQKSATILG 404 (508)
Q Consensus 325 ~~~Y~~~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~ 404 (508)
..+|+++||.++.++.++|+.++.+++|.+|+||++||.++|++||.++++++++..|+.++++++++++++...|+.++
T Consensus 527 ~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g 606 (1391)
T KOG0065|consen 527 LSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIG 606 (1391)
T ss_pred ccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccC--CchhhHHHhhhhCHHHHHHHHHHHHHhCCCCcccCCC----------CCCccccCC-ccc--
Q 010509 405 SIIMQLFVLAGGYYVQ--NVPSFIAWIEYLSIGHHTYKLLLGSQYNYNETYPCGD----------SGGLCLVGE-HPT-- 469 (508)
Q Consensus 405 ~~~~~~~~l~~Gf~i~--~ip~~~~W~~yiS~~~y~~eal~~nef~~~~~~~c~~----------~~~~c~~~~-~~~-- 469 (508)
++.++.+.+++||+|| +||+||+|++|+||+.||||+++.|||.++ .++|.+ .+..|...+ .++
T Consensus 607 ~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~-~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~ 685 (1391)
T KOG0065|consen 607 GILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGR-RWPCSPSGPAYDNISIENKVCAATGATLGND 685 (1391)
T ss_pred HHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcc-cCCCCCCCCcccccccccccchhhccccCce
Confidence 9999999999999999 999999999999999999999999999986 789983 134564322 122
Q ss_pred -ceee---------CCCcchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 010509 470 -IKKV---------GLHRKYYSVIALAIMLVGYRLIAYIALMRIGAT 506 (508)
Q Consensus 470 -~~~~---------~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~ 506 (508)
++.. ...+.|+|++|++|+.++|.++..+++.+++..
T Consensus 686 ~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~ 732 (1391)
T KOG0065|consen 686 YVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPL 732 (1391)
T ss_pred EEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 1111 124689999999999999999999999987643
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-57 Score=421.95 Aligned_cols=217 Identities=28% Similarity=0.513 Sum_probs=200.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++||+++|+ +.++|+|||++|++||+++|+||||||||||||||.++..+++|+|.++|+++..
T Consensus 2 mi~i~~l~K~fg-------------~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~ 68 (240)
T COG1126 2 MIEIKNLSKSFG-------------DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGD 68 (240)
T ss_pred eEEEEeeeEEeC-------------CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccc
Confidence 589999999876 5789999999999999999999999999999999999999999999999987642
Q ss_pred -----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 -----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 -----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
..|+.+|+|||+..|||++||.||+..+...- ...++++.++++.++|+.+||.+.+|.+. .+|||||
T Consensus 69 ~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----~qLSGGQ 141 (240)
T COG1126 69 KKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYP-----AQLSGGQ 141 (240)
T ss_pred hhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCc-----cccCcHH
Confidence 46889999999999999999999999875321 35678899999999999999999998665 5999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
||||+|||||+.+|+++++|||||+|||....++++.+++|+++|.|.|++||++. .+.+.+|||++|++|+++..|+|
T Consensus 142 qQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~-FAr~VadrviFmd~G~iie~g~p 220 (240)
T COG1126 142 QQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG-FAREVADRVIFMDQGKIIEEGPP 220 (240)
T ss_pred HHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhH-HHHHhhheEEEeeCCEEEEecCH
Confidence 99999999999999999999999999999999999999999999999999999997 68899999999999999999988
Q ss_pred hhH
Q 010509 273 SGA 275 (508)
Q Consensus 273 ~~~ 275 (508)
++.
T Consensus 221 ~~~ 223 (240)
T COG1126 221 EEF 223 (240)
T ss_pred HHH
Confidence 865
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-53 Score=416.35 Aligned_cols=222 Identities=25% Similarity=0.393 Sum_probs=202.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|+++.+... ..+...+|+|||++|++||+++|+|+||||||||+|++.++..|++|+|.++|+++..
T Consensus 1 mI~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~ 72 (339)
T COG1135 1 MIELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTA 72 (339)
T ss_pred CeEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEeccc
Confidence 47899999987631 1124579999999999999999999999999999999999999999999999988753
Q ss_pred -------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 118 -------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 -------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
..|+.||++||+..|+...||.||+.|...+. +.+++++++||.++++.+||++.++.+. .+|||
T Consensus 73 l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~yP-----~qLSG 144 (339)
T COG1135 73 LSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADRYP-----AQLSG 144 (339)
T ss_pred CChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhccCc-----hhcCc
Confidence 46789999999999999999999999987764 4678999999999999999999888665 59999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
||||||+|||||+++|+||++|||||+|||.+...|+++|+++.++ |.||+++||+++ .+.+.||||.+|++|+++..
T Consensus 145 GQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~G~lvE~ 223 (339)
T COG1135 145 GQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQGRLVEE 223 (339)
T ss_pred chhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeCCEEEEe
Confidence 9999999999999999999999999999999999999999999764 999999999996 79999999999999999999
Q ss_pred cChhhHH
Q 010509 270 GEASGAM 276 (508)
Q Consensus 270 G~~~~~~ 276 (508)
|+..++.
T Consensus 224 G~v~~vF 230 (339)
T COG1135 224 GTVSEVF 230 (339)
T ss_pred ccHHHhh
Confidence 9988764
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-52 Score=422.96 Aligned_cols=225 Identities=34% Similarity=0.520 Sum_probs=203.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+++.++. ++.+|+||||++++||++|++||||||||||+|+|+|+..|++|+|.++|.+..+
T Consensus 4 ~i~~~~l~k~~~~------------~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~ 71 (293)
T COG1131 4 VIEVRNLTKKYGG------------DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVK 71 (293)
T ss_pred eeeecceEEEeCC------------CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCcc
Confidence 4788999988751 3789999999999999999999999999999999999999999999999998754
Q ss_pred ---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHH
Q 010509 118 ---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 118 ---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 194 (508)
..++++||++|++.+++.+||+|++.|.+.++.+. .+..+++++++++.+||.+.++++++ +||+||||
T Consensus 72 ~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~~~~-----~lS~G~kq 143 (293)
T COG1131 72 EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANKKVR-----TLSGGMKQ 143 (293)
T ss_pred CHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCcchh-----hcCHHHHH
Confidence 56788999999999999999999999999887532 24566789999999999986666664 99999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCC-CEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGG-RTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
|++||+||+++|+++||||||+||||.++.++++.|++++++| +||++|||+++ ++..+||+|++|++|+++++|+++
T Consensus 144 rl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~ 222 (293)
T COG1131 144 RLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPE 222 (293)
T ss_pred HHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHH
Confidence 9999999999999999999999999999999999999999886 89999999997 577889999999999999999999
Q ss_pred hHHHHHHhcC
Q 010509 274 GAMNYFASIG 283 (508)
Q Consensus 274 ~~~~~f~~~g 283 (508)
++...+....
T Consensus 223 ~l~~~~~~~~ 232 (293)
T COG1131 223 ELKEKFGGKG 232 (293)
T ss_pred HHHHhhccCc
Confidence 9877766533
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=401.85 Aligned_cols=218 Identities=25% Similarity=0.457 Sum_probs=201.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|+|+.|. ++++++|+|++|++||+++++|||||||||+||+|.+++.|++|+|.+||+++..
T Consensus 1 MI~~~nvsk~y~-------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~ 67 (309)
T COG1125 1 MIEFENVSKRYG-------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISD 67 (309)
T ss_pred CceeeeeehhcC-------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeeccc
Confidence 478999998875 5789999999999999999999999999999999999999999999999999864
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc--ccccccCCCCCCccCHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE--CKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~~~~~~LSGG 191 (508)
++|+.||||-|.-.|||++||.||+..--.+. ++++++.+++++|+|+.+||++ +++ ++|++||||
T Consensus 68 ~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~-----RyP~eLSGG 139 (309)
T COG1125 68 LDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYAD-----RYPHELSGG 139 (309)
T ss_pred CCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhh-----cCchhcCcc
Confidence 67999999999999999999999999876654 5688899999999999999975 455 456799999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
|+|||.+||||+.+|+||++|||+++|||.++.++.+.++++.++ |+|||++|||.. ++.+++|||++|++|+++-++
T Consensus 140 QQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~G~i~Q~~ 218 (309)
T COG1125 140 QQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDAGEIVQYD 218 (309)
T ss_pred hhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecCCeEEEeC
Confidence 999999999999999999999999999999999999999999875 999999999987 577999999999999999999
Q ss_pred ChhhHHH
Q 010509 271 EASGAMN 277 (508)
Q Consensus 271 ~~~~~~~ 277 (508)
+|+++..
T Consensus 219 ~P~~il~ 225 (309)
T COG1125 219 TPDEILA 225 (309)
T ss_pred CHHHHHh
Confidence 9998753
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=410.43 Aligned_cols=220 Identities=29% Similarity=0.462 Sum_probs=197.1
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++||++.|+ ++.+|+|+||++++||+++|+||||||||||||+|+|+++|.+|+|.++|+++.+
T Consensus 2 ~L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~ 68 (258)
T COG1120 2 MLEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIAS 68 (258)
T ss_pred eeEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhh
Confidence 589999999986 5789999999999999999999999999999999999999999999999999853
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPN-SFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
+..+.++||||.....+.+||+|.+.++..-+... ....++.++.++++|+.+|+.+.+++.+. +|||||
T Consensus 69 ~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~-----~LSGGe 143 (258)
T COG1120 69 LSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD-----ELSGGE 143 (258)
T ss_pred cCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc-----ccChhH
Confidence 57789999999998888999999998874321110 11233445689999999999999999886 899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
||||.|||||+++|++|+||||||.||..++.+++++++++++ +|+|||+++||++ .+.++||++++|++|+++..|+
T Consensus 144 rQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk~G~i~a~G~ 222 (258)
T COG1120 144 RQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLKDGKIVAQGT 222 (258)
T ss_pred HHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEeecC
Confidence 9999999999999999999999999999999999999999985 5999999999997 5779999999999999999999
Q ss_pred hhhHH
Q 010509 272 ASGAM 276 (508)
Q Consensus 272 ~~~~~ 276 (508)
|++++
T Consensus 223 p~evl 227 (258)
T COG1120 223 PEEVL 227 (258)
T ss_pred cchhc
Confidence 98764
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-52 Score=394.81 Aligned_cols=220 Identities=30% Similarity=0.463 Sum_probs=200.8
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
...+++++|++++. ++.|++|||++|++||+++||||||||||||||+|.|+++|++|+|.++|+++
T Consensus 6 ~~~I~vr~v~~~fG-------------~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i 72 (263)
T COG1127 6 EPLIEVRGVTKSFG-------------DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDI 72 (263)
T ss_pred cceEEEeeeeeecC-------------CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcch
Confidence 34699999999875 68899999999999999999999999999999999999999999999999987
Q ss_pred Ch-------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCc
Q 010509 116 SN-------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC-KNSLIGGPLTRG 187 (508)
Q Consensus 116 ~~-------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~ 187 (508)
.. +.++++|+++|+-.||..|||+||+.|..+-. ...+++..++.+..-|+.+||... ++. +|.+
T Consensus 73 ~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~~~~~-----~PsE 145 (263)
T COG1127 73 PQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGAAADL-----YPSE 145 (263)
T ss_pred hccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChhhhhh-----Cchh
Confidence 43 46788999999999999999999999976543 356788888899999999999876 554 4569
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
|||||+||+++|||++.||+++++||||+||||.++..+-+++++|.+. |.|++++|||.. .++..+||+++|.+|++
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~gkv 224 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLADGKV 224 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeCCEE
Confidence 9999999999999999999999999999999999999999999999876 999999999997 58899999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
+.+|+++++.
T Consensus 225 ~~~Gt~~el~ 234 (263)
T COG1127 225 IAEGTPEELL 234 (263)
T ss_pred EEeCCHHHHH
Confidence 9999999864
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-52 Score=384.72 Aligned_cols=235 Identities=25% Similarity=0.358 Sum_probs=212.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|++.+++++|+. ..++++||||+++.||+++|+|||||||||+||+|++++.|++|.|+++|.+..+
T Consensus 1 Ml~v~~l~K~y~~------------~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~ 68 (245)
T COG4555 1 MLEVTDLTKSYGS------------KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR 68 (245)
T ss_pred CeeeeehhhhccC------------HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc
Confidence 4778899888762 2458999999999999999999999999999999999999999999999998743
Q ss_pred ---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHH
Q 010509 118 ---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 118 ---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 194 (508)
..|++||.++.+..+|..||++|||.|.+++. ++++.+.+++.+++.+.|+|.++.|+++| ++|.|+||
T Consensus 69 ~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kq 140 (245)
T COG4555 69 DPSFVRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQ 140 (245)
T ss_pred ChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHH
Confidence 57889999998889999999999999999875 56778889999999999999999999998 89999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
||+|||||+++|++++|||||||||..+...+.+.++++.++|++||++||.++ ++..+||+|+++++|++++.|++++
T Consensus 141 kV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~Gevv~~gs~~~ 219 (245)
T COG4555 141 KVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHKGEVVLEGSIEA 219 (245)
T ss_pred HHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEecCcEEEcCCHHH
Confidence 999999999999999999999999999999999999999999999999999997 6889999999999999999999988
Q ss_pred HHHHHHhcCCCCCCCCChHHHHHHhhc
Q 010509 275 AMNYFASIGYCPSVPTNPSDFLLDLAS 301 (508)
Q Consensus 275 ~~~~f~~~g~~~p~~~npad~~~~~~~ 301 (508)
....-. ..|+.+-++....
T Consensus 220 l~~r~~--------~~~le~~f~~~l~ 238 (245)
T COG4555 220 LDARTV--------LRNLEEIFAFALK 238 (245)
T ss_pred HHHHHh--------hcCHHHHHHHhhc
Confidence 765543 2567676655543
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-51 Score=415.78 Aligned_cols=219 Identities=27% Similarity=0.433 Sum_probs=202.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++||+++|+ +..+|+|+|+++++||+++|+||||||||||||+|||+..|++|+|.++|++++.
T Consensus 3 ~i~l~~v~K~yg-------------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~ 69 (338)
T COG3839 3 ELELKNVRKSFG-------------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTD 69 (338)
T ss_pred EEEEeeeEEEcC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC
Confidence 689999999975 2229999999999999999999999999999999999999999999999999975
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
-.+|.+++|||+..|||+|||+||+.|+.+.+ ..++++.+++|+++.+.|+|++..|+++ ++||||||||
T Consensus 70 l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P-----~~LSGGQrQR 141 (338)
T COG3839 70 LPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKP-----LQLSGGQRQR 141 (338)
T ss_pred CChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCc-----ccCChhhHHH
Confidence 34678999999999999999999999998765 4577889999999999999999999876 4999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
|+|||||+.+|++++||||+|+||...+.++...|+++.++ |.|+|.+|||.. ++..++||+.+|++|++...|+|.+
T Consensus 142 VAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~~G~i~Q~g~p~e 220 (338)
T COG3839 142 VALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMNDGRIQQVGTPLE 220 (338)
T ss_pred HHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEeCCeeeecCChHH
Confidence 99999999999999999999999999999999999999875 999999999976 6789999999999999999999998
Q ss_pred HHHH
Q 010509 275 AMNY 278 (508)
Q Consensus 275 ~~~~ 278 (508)
+.++
T Consensus 221 ly~~ 224 (338)
T COG3839 221 LYER 224 (338)
T ss_pred HhhC
Confidence 8643
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-51 Score=391.70 Aligned_cols=227 Identities=26% Similarity=0.459 Sum_probs=200.4
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
.+|+++||++.|+ +++++|+|||++|++||++||+||||||||||||+|.|+.+|++|+|.+||.++.
T Consensus 2 ~~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~ 69 (258)
T COG3638 2 MMIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQIT 69 (258)
T ss_pred ceEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchh
Confidence 4699999999985 2578999999999999999999999999999999999999999999999998774
Q ss_pred h-------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC-----CCCHHHHHHHHHHHHHHcCCCcccccccCCCC
Q 010509 117 N-------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPN-----SFTEKEKIKCAEAVMTELGLSECKNSLIGGPL 184 (508)
Q Consensus 117 ~-------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 184 (508)
. ++|+++||++|++.|.+.+||.+|+..+..-+.+. ++..++.++++-+.|+.+|+.+.+.++.+
T Consensus 70 ~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~--- 146 (258)
T COG3638 70 KLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS--- 146 (258)
T ss_pred ccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc---
Confidence 3 45789999999999999999999998775433221 12223445677789999999999988886
Q ss_pred CCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
.|||||+|||+|||||+.+|+++|.|||+++|||.+++++|+.|+++++ +|.|+|++.||.. .+.++|||++-|++
T Consensus 147 --~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd-lA~~Y~~Riigl~~ 223 (258)
T COG3638 147 --TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD-LAKKYADRIIGLKA 223 (258)
T ss_pred --cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHHhhheEecC
Confidence 8999999999999999999999999999999999999999999999986 5999999999987 57799999999999
Q ss_pred CeEEEEcChhhHHHHHHh
Q 010509 264 GYPLYSGEASGAMNYFAS 281 (508)
Q Consensus 264 G~iv~~G~~~~~~~~f~~ 281 (508)
|+++|+|+++++.+.+-.
T Consensus 224 G~ivfDg~~~el~~~~~~ 241 (258)
T COG3638 224 GRIVFDGPASELTDEALD 241 (258)
T ss_pred CcEEEeCChhhhhHHHHH
Confidence 999999999987665443
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-51 Score=391.70 Aligned_cols=209 Identities=32% Similarity=0.529 Sum_probs=183.2
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++||++.+.... ....+|+++|++|++||+++|+|||||||||||++|+|+..|++|.|.++|+++..
T Consensus 2 i~~~~v~k~y~~~~---------~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l 72 (226)
T COG1136 2 IELKNVSKIYGLGG---------EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKL 72 (226)
T ss_pred cEEeeeEEEeccCC---------cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcC
Confidence 56899999876321 12679999999999999999999999999999999999999999999999998752
Q ss_pred ------hc-cccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-cccCCCCCCccC
Q 010509 118 ------QM-TRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKN-SLIGGPLTRGVS 189 (508)
Q Consensus 118 ------~~-~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-~~vg~~~~~~LS 189 (508)
.+ ++.+|||+|+..|.|++||.||+.+...+.. .+..+++++++++++.+||.+..+ +++ .+||
T Consensus 73 ~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----~eLS 144 (226)
T COG1136 73 SEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLKKKP-----SELS 144 (226)
T ss_pred CHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhccCCc-----hhcC
Confidence 23 4579999999999999999999998775542 233356778899999999997766 444 5999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
|||||||+|||||+++|++|+.||||.+||+.++.+++++|++++++ |+|||++|||+. +...|||++.|.+|++
T Consensus 145 GGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 145 GGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhCCEEEEEeCCee
Confidence 99999999999999999999999999999999999999999999865 999999999974 6689999999999983
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-51 Score=396.97 Aligned_cols=219 Identities=27% Similarity=0.505 Sum_probs=191.5
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|+++.|+ .+++|+|||+++++|++++|+||||||||||+|+|.|+++|.+|+|.++|++..
T Consensus 3 ~~i~v~nl~v~y~-------------~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~ 69 (254)
T COG1121 3 PMIEVENLTVSYG-------------NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVR 69 (254)
T ss_pred cEEEEeeeEEEEC-------------CEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccc
Confidence 3699999999986 226999999999999999999999999999999999999999999999999876
Q ss_pred hh-ccccEEEEecCC---CCCCCCCHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 117 NQ-MTRNTGFVTQED---VLSPYLTVTETMVFTALLQLP--NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 117 ~~-~~~~i~yv~Q~~---~l~~~lTv~E~l~~~~~l~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
.. -+.+||||||.. .-+| +||+|.+..+...+.+ ...++ +.++.++++|+.+|+.+.+|+.+| +|||
T Consensus 70 ~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~-~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSG 142 (254)
T COG1121 70 KRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNK-KDKEKVDEALERVGMEDLRDRQIG-----ELSG 142 (254)
T ss_pred ccccCCeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccH-HHHHHHHHHHHHcCchhhhCCccc-----ccCc
Confidence 53 246799999953 3455 7999999887433221 12233 347889999999999999999998 8999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||+|||.|||||+++|++|+|||||+|+|+.++..+.++|++++++|+||++++||++ .+.++||+|+.|+ +++++.|
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln-~~~~~~G 220 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN-RHLIASG 220 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc-CeeEecc
Confidence 9999999999999999999999999999999999999999999988999999999997 5778999999996 5688999
Q ss_pred ChhhHHH
Q 010509 271 EASGAMN 277 (508)
Q Consensus 271 ~~~~~~~ 277 (508)
+++++.+
T Consensus 221 ~~~~~~~ 227 (254)
T COG1121 221 PPEEVLT 227 (254)
T ss_pred ChhhccC
Confidence 9988754
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-51 Score=417.67 Aligned_cols=219 Identities=27% Similarity=0.441 Sum_probs=201.5
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|++++|+ +..+|+|+|++|++||+++|+||||||||||||+|||+..|++|+|.++|++++
T Consensus 4 ~~l~i~~v~k~yg-------------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~ 70 (352)
T COG3842 4 PALEIRNVSKSFG-------------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDIT 70 (352)
T ss_pred ceEEEEeeeeecC-------------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECC
Confidence 4689999999875 578999999999999999999999999999999999999999999999999997
Q ss_pred h--hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHH
Q 010509 117 N--QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 117 ~--~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 194 (508)
. -.+|.+|+|||+..|||+|||+||+.|+.+.+ ....+++.+++++++++.++|++.+++++ .+|||||||
T Consensus 71 ~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQqQ 143 (352)
T COG3842 71 DVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKP-----HQLSGGQQQ 143 (352)
T ss_pred CCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhCh-----hhhChHHHH
Confidence 5 45789999999999999999999999998743 33456778899999999999999888765 599999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
||+|||||+.+|++||||||.|+||..-+.++...|+++.++ |.|.|++|||.. +...++|||.+|++|++.-.|+|+
T Consensus 144 RVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~G~I~Q~gtP~ 222 (352)
T COG3842 144 RVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMNDGRIEQVGTPE 222 (352)
T ss_pred HHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccCCceeecCCHH
Confidence 999999999999999999999999999999999999999764 999999999976 577999999999999999999999
Q ss_pred hHH
Q 010509 274 GAM 276 (508)
Q Consensus 274 ~~~ 276 (508)
++.
T Consensus 223 eiY 225 (352)
T COG3842 223 EIY 225 (352)
T ss_pred HHh
Confidence 873
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-51 Score=391.91 Aligned_cols=204 Identities=31% Similarity=0.533 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++++++.+. ..++|+|+|++|++||+++|+||||||||||||+|+|+.+|++|+|.++|+++ .
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v-~ 68 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPV-T 68 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc-C
Confidence 588999999876 36899999999999999999999999999999999999999999999999998 4
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVS 197 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 197 (508)
.....++||+|++.|+|-+||.||+.++...+. .++++++++++++|+.+||.+..|++ |++|||||||||+
T Consensus 69 ~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQRVa 140 (248)
T COG1116 69 GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQRVA 140 (248)
T ss_pred CCCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHHHHH
Confidence 456789999999999999999999999876642 45677778999999999999998865 4699999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 198 IGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 198 Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
|||||+.+|++|+||||+++||..++.++.+.|.++.+ .++||+++|||.++ +..++|||++|+++
T Consensus 141 iARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~E-Av~LsdRivvl~~~ 207 (248)
T COG1116 141 IARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDE-AVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH-HHhhhCEEEEecCC
Confidence 99999999999999999999999999999999999865 59999999999975 56899999999984
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=405.53 Aligned_cols=220 Identities=25% Similarity=0.438 Sum_probs=199.0
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++||+++++ ++.+|+||||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 6 ~~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~ 72 (306)
T PRK13537 6 APIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVP 72 (306)
T ss_pred ceEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecc
Confidence 3699999999875 357999999999999999999999999999999999999999999999999875
Q ss_pred h---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 117 N---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 117 ~---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
. ..++.+||++|++.+++.+||+||+.+.+..+ ..+..+..++++++++.++|.+.+++.++ +||||||
T Consensus 73 ~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~ 144 (306)
T PRK13537 73 SRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVG-----ELSGGMK 144 (306)
T ss_pred cchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchh-----hCCHHHH
Confidence 3 45678999999999999999999999876553 23445556778999999999998888875 8999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
||++||+||+++|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.++|||+++|++|++++.|+++
T Consensus 145 qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~ 223 (306)
T PRK13537 145 RRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPH 223 (306)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999999878999999999987 578899999999999999999998
Q ss_pred hHHHH
Q 010509 274 GAMNY 278 (508)
Q Consensus 274 ~~~~~ 278 (508)
++.+-
T Consensus 224 ~l~~~ 228 (306)
T PRK13537 224 ALIES 228 (306)
T ss_pred HHHhc
Confidence 87653
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=396.41 Aligned_cols=221 Identities=29% Similarity=0.460 Sum_probs=199.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCE---e
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGK---P 114 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~---~ 114 (508)
+++++++++.++ ...+++|||++|+.||++|++||||||||||||+|||+..|++|.|.+||+ +
T Consensus 2 ~i~i~~~~~~~~-------------~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D 68 (345)
T COG1118 2 SIRINNVKKRFG-------------AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFD 68 (345)
T ss_pred ceeehhhhhhcc-------------cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccc
Confidence 567777777654 467899999999999999999999999999999999999999999999999 5
Q ss_pred CCh--hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 115 FSN--QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 115 ~~~--~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
.++ ...|+||||+|+..+|+.|||.+|+.|+...+ ....++.+.+.+++++|+.+.|++.++++ |.+|||||
T Consensus 69 ~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQ 142 (345)
T COG1118 69 VSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQ 142 (345)
T ss_pred hhccchhhcceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHH
Confidence 543 23568999999999999999999999998766 23346778889999999999999988765 56999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
||||++||||+.+|++|+||||+++||...+.++.+.|+++.++ |.|.+++|||+. ++.++||||++|++|+|...|+
T Consensus 143 rQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg~ 221 (345)
T COG1118 143 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGP 221 (345)
T ss_pred HHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecCCeeeeeCC
Confidence 99999999999999999999999999999999999999999876 999999999986 6889999999999999999999
Q ss_pred hhhHHHH
Q 010509 272 ASGAMNY 278 (508)
Q Consensus 272 ~~~~~~~ 278 (508)
++++.+.
T Consensus 222 p~ev~~~ 228 (345)
T COG1118 222 PDEVYDH 228 (345)
T ss_pred HHHHhcC
Confidence 9988543
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-49 Score=407.60 Aligned_cols=218 Identities=26% Similarity=0.417 Sum_probs=196.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++|++++++ +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++..
T Consensus 3 ~l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~ 70 (356)
T PRK11650 3 GLKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNE 70 (356)
T ss_pred EEEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCC
Confidence 589999999873 13579999999999999999999999999999999999999999999999998853
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.+|||+|++.++|++||+||+.|+...+ ..++.+.+++++++++.+||.+..++.+ ++||||||||
T Consensus 71 ~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~QR 142 (356)
T PRK11650 71 LEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQRQR 142 (356)
T ss_pred CCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHH
Confidence 23578999999999999999999999986542 2355666788999999999998888776 4999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
|+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++|||+. ++..++|++++|++|+++..|++++
T Consensus 143 valARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~G~i~~~g~~~~ 221 (356)
T PRK11650 143 VAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNGGVAEQIGTPVE 221 (356)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEECCHHH
Confidence 99999999999999999999999999999999999999875 999999999986 5789999999999999999999987
Q ss_pred HH
Q 010509 275 AM 276 (508)
Q Consensus 275 ~~ 276 (508)
+.
T Consensus 222 ~~ 223 (356)
T PRK11650 222 VY 223 (356)
T ss_pred HH
Confidence 63
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-49 Score=404.32 Aligned_cols=221 Identities=24% Similarity=0.381 Sum_probs=196.1
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++|++++++.. .+.+++|+||||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++..
T Consensus 1 mI~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~ 71 (343)
T TIGR02314 1 MIKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTT 71 (343)
T ss_pred CEEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc
Confidence 37899999998521 012579999999999999999999999999999999999999999999999998753
Q ss_pred -------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 118 -------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 -------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
..++.+||++|+..+++.+||+||+.+..... ..++++.++++.++++.+||.+..|+.+ ++|||
T Consensus 72 ~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LSg 143 (343)
T TIGR02314 72 LSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYP-----SNLSG 143 (343)
T ss_pred CCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCH
Confidence 23678999999999999999999999876432 2355667778999999999998888765 49999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
||||||+|||||+++|++|+||||||+||+.++..+++.|++++++ |.|||++||+++ .+.++||++++|++|+++..
T Consensus 144 GqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~G~iv~~ 222 (343)
T TIGR02314 144 GQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQ 222 (343)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999875 999999999986 57789999999999999999
Q ss_pred cChhhHH
Q 010509 270 GEASGAM 276 (508)
Q Consensus 270 G~~~~~~ 276 (508)
|+++++.
T Consensus 223 g~~~~v~ 229 (343)
T TIGR02314 223 GTVSEIF 229 (343)
T ss_pred cCHHHHH
Confidence 9988763
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=403.54 Aligned_cols=223 Identities=25% Similarity=0.404 Sum_probs=200.1
Q ss_pred CCceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCE
Q 010509 34 KHPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGK 113 (508)
Q Consensus 34 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~ 113 (508)
+....++++||+++++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 37 ~~~~~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~ 103 (340)
T PRK13536 37 MSTVAIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGV 103 (340)
T ss_pred CCceeEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCE
Confidence 3455799999999875 457999999999999999999999999999999999999999999999999
Q ss_pred eCCh---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 114 PFSN---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 114 ~~~~---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
++.. ..++.+||++|++.+++.+||+||+.+....+ ..+..+..++++++++.+||.+..++.++ +|||
T Consensus 104 ~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~ 175 (340)
T PRK13536 104 PVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARVS-----DLSG 175 (340)
T ss_pred ECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCChh-----hCCH
Confidence 8753 45678999999999999999999999766543 12344555678899999999998888875 8999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
|||||++||+||+++|++|+|||||+|||+.++.++++.|++++++|+|||++||+++ ++.++||++++|++|++++.|
T Consensus 176 G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~G~i~~~g 254 (340)
T PRK13536 176 GMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEAGRKIAEG 254 (340)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999999999999999999999878999999999986 688999999999999999999
Q ss_pred ChhhHHHH
Q 010509 271 EASGAMNY 278 (508)
Q Consensus 271 ~~~~~~~~ 278 (508)
++++..+.
T Consensus 255 ~~~~l~~~ 262 (340)
T PRK13536 255 RPHALIDE 262 (340)
T ss_pred CHHHHHhh
Confidence 99988654
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=366.17 Aligned_cols=213 Identities=29% Similarity=0.454 Sum_probs=194.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++|+|+++.|.. ++.+|+||||++++||++-|.||||||||||||+|.+..+|++|+|.+||+++++
T Consensus 1 mI~f~~V~k~Y~~------------g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~ 68 (223)
T COG2884 1 MIRFENVSKAYPG------------GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSR 68 (223)
T ss_pred CeeehhhhhhcCC------------CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeeccc
Confidence 4789999998862 3679999999999999999999999999999999999999999999999999853
Q ss_pred -------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 118 -------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 -------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
..||+||+|+||..|.+..||+||+.|+.+.. +.++++.+++|.++|+.+||.+.++... .+|||
T Consensus 69 l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----~~LSG 140 (223)
T COG2884 69 LKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARALP-----SQLSG 140 (223)
T ss_pred ccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcCc-----cccCc
Confidence 36889999999999999999999999987654 4567888999999999999999887654 59999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||||||+||||++.+|++|+.||||-+|||..+.+|++++.++.+.|+||+++|||.+ .+.++-.|++.|++|+++.+.
T Consensus 141 GEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~-lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 141 GEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE-LVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred hHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH-HHHhccCcEEEEeCCEEEecc
Confidence 9999999999999999999999999999999999999999999999999999999965 577888999999999998765
Q ss_pred C
Q 010509 271 E 271 (508)
Q Consensus 271 ~ 271 (508)
.
T Consensus 220 ~ 220 (223)
T COG2884 220 S 220 (223)
T ss_pred c
Confidence 3
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-49 Score=405.85 Aligned_cols=218 Identities=28% Similarity=0.458 Sum_probs=197.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++||+++++ .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~ 70 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITR 70 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCC
Confidence 589999999875 3569999999999999999999999999999999999999999999999998853
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.+|||+|+..+||.+||+||+.|+...+ ..++.+.+++++++++.+||.+..|+.+ ++||||||||
T Consensus 71 ~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~QR 142 (353)
T TIGR03265 71 LPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQQR 142 (353)
T ss_pred CCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHHHH
Confidence 34678999999999999999999999986543 2456677788999999999999888765 4999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
|+|||||+.+|+++||||||++||+.++.++.+.|+++.++ |.|+|++|||++ ++..++||+++|++|+++..|++++
T Consensus 143 vaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~i~~~g~~~~ 221 (353)
T TIGR03265 143 VALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNHGVIEQVGTPQE 221 (353)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999765 999999999986 5789999999999999999999987
Q ss_pred HHH
Q 010509 275 AMN 277 (508)
Q Consensus 275 ~~~ 277 (508)
+.+
T Consensus 222 ~~~ 224 (353)
T TIGR03265 222 IYR 224 (353)
T ss_pred HHh
Confidence 754
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=383.20 Aligned_cols=216 Identities=28% Similarity=0.470 Sum_probs=190.3
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
|+++|++++++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~ 67 (235)
T cd03261 1 IELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGL 67 (235)
T ss_pred CeEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccc
Confidence 46789998874 3569999999999999999999999999999999999999999999999998642
Q ss_pred ------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 118 ------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 118 ------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
..++.++|++|++.+++.+||.||+.+...... ..++++..++++++++.+||.+..++.++ +||||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 140 (235)
T cd03261 68 SEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYPA-----ELSGG 140 (235)
T ss_pred ChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHH
Confidence 245679999999999999999999988653221 22445556778899999999887777664 89999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
|||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ .+..+||++++|++|++++.|
T Consensus 141 ~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g 219 (235)
T cd03261 141 MKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEG 219 (235)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEec
Confidence 999999999999999999999999999999999999999999874 899999999986 577899999999999999999
Q ss_pred ChhhH
Q 010509 271 EASGA 275 (508)
Q Consensus 271 ~~~~~ 275 (508)
++++.
T Consensus 220 ~~~~~ 224 (235)
T cd03261 220 TPEEL 224 (235)
T ss_pred CHHHH
Confidence 88765
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=403.25 Aligned_cols=217 Identities=22% Similarity=0.434 Sum_probs=197.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++..
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~ 72 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTH 72 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCC
Confidence 699999999875 3569999999999999999999999999999999999999999999999998853
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.+|||+|+..++|.+||+||+.|+...+ ..++++.+++++++++.+||.+..++.+ ++||||||||
T Consensus 73 ~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~QR 144 (351)
T PRK11432 73 RSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQQR 144 (351)
T ss_pred CCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHH
Confidence 33578999999999999999999999987543 2456677788999999999998887665 4999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
|+|||||+.+|++|+|||||+|||+.++.++.+.|+++.++ |+|+|++|||++ ++..++||+++|++|+++..|++++
T Consensus 145 VaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~G~i~~~g~~~~ 223 (351)
T PRK11432 145 VALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNKGKIMQIGSPQE 223 (351)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999765 999999999986 5789999999999999999999987
Q ss_pred HH
Q 010509 275 AM 276 (508)
Q Consensus 275 ~~ 276 (508)
+.
T Consensus 224 ~~ 225 (351)
T PRK11432 224 LY 225 (351)
T ss_pred HH
Confidence 64
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-48 Score=402.87 Aligned_cols=218 Identities=26% Similarity=0.439 Sum_probs=197.1
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcc--cEEEECCEeC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN--GRITYNGKPF 115 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~--G~I~~~G~~~ 115 (508)
.|+++|++++++ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++ |+|.++|+++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~ 71 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDL 71 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEEC
Confidence 488999999875 3569999999999999999999999999999999999999999 9999999987
Q ss_pred Ch--hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 116 SN--QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 116 ~~--~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
.. ..++.+|||+|+..++|.+||+||+.|+...+ ..++++.+++++++++.+||++..++.+. +||||||
T Consensus 72 ~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~~-----~LSgGq~ 143 (362)
T TIGR03258 72 THAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLPA-----QLSGGMQ 143 (362)
T ss_pred CCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCChh-----hCCHHHH
Confidence 53 23578999999999999999999999986543 24556667789999999999998887764 9999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC--CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG--GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~--g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
|||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.++ |.|+|++|||++ ++..++||+++|++|+++..|+
T Consensus 144 QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~G~i~~~g~ 222 (362)
T TIGR03258 144 QRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKDGRLAAHGE 222 (362)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcC
Confidence 9999999999999999999999999999999999999999876 899999999986 5789999999999999999999
Q ss_pred hhhHHH
Q 010509 272 ASGAMN 277 (508)
Q Consensus 272 ~~~~~~ 277 (508)
++++.+
T Consensus 223 ~~~~~~ 228 (362)
T TIGR03258 223 PQALYD 228 (362)
T ss_pred HHHHHh
Confidence 987743
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-48 Score=401.11 Aligned_cols=220 Identities=25% Similarity=0.399 Sum_probs=196.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++|++++++ ++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++..
T Consensus 2 ~L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~ 68 (353)
T PRK10851 2 SIEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSR 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC
Confidence 588999999875 3569999999999999999999999999999999999999999999999998753
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP-NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 194 (508)
..++.++||+|++.++|.+||+||+.|....... ...+.++.+++++++++.++|.+..++++ ++|||||||
T Consensus 69 ~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~Q 143 (353)
T PRK10851 69 LHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQKQ 143 (353)
T ss_pred CCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHH
Confidence 3356899999999999999999999987643211 12345566778999999999998887765 499999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
||+|||||+.+|++|+|||||+|||+.++.++.+.|++++++ |.|+|++|||++ ++..++||+++|++|+++..|+++
T Consensus 144 RvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~G~i~~~g~~~ 222 (353)
T PRK10851 144 RVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQGNIEQAGTPD 222 (353)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999875 899999999986 578899999999999999999998
Q ss_pred hHH
Q 010509 274 GAM 276 (508)
Q Consensus 274 ~~~ 276 (508)
++.
T Consensus 223 ~i~ 225 (353)
T PRK10851 223 QVW 225 (353)
T ss_pred HHH
Confidence 874
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=374.12 Aligned_cols=222 Identities=26% Similarity=0.416 Sum_probs=193.3
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
.+++++||++.++... ...++|+||||++++||.++|+|+||||||||.++|+|+.+|++|+|.++|++..
T Consensus 2 ~~l~v~nl~~~y~~~~---------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~ 72 (252)
T COG1124 2 TLLSVRNLSIVYGGGK---------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLA 72 (252)
T ss_pred ceEEEeceEEEecCCc---------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccC
Confidence 3689999999987321 1236999999999999999999999999999999999999999999999998775
Q ss_pred h-----hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCcc
Q 010509 117 N-----QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTRGV 188 (508)
Q Consensus 117 ~-----~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~L 188 (508)
+ .+++.+.+||||+ .+.|..||++.|.-+... .+.++.+ +++.++++.+||.+ .+++ +|.+|
T Consensus 73 ~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~~--~~i~~~L~~VgL~~~~l~R-----~P~eL 142 (252)
T COG1124 73 PKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKSQ--QRIAELLDQVGLPPSFLDR-----RPHEL 142 (252)
T ss_pred ccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHHH--HHHHHHHHHcCCCHHHHhc-----Cchhc
Confidence 4 3577899999997 589999999999876543 2333333 34899999999974 3444 45699
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 189 SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 189 SGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
|||||||++|||||+.+|++|+||||||+||+..+.+|+++|.+++++ |.|.|++|||.+ .+.++|||+++|++|+++
T Consensus 143 SGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~G~iv 221 (252)
T COG1124 143 SGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDNGQIV 221 (252)
T ss_pred ChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeCCeEE
Confidence 999999999999999999999999999999999999999999999875 899999999986 688999999999999999
Q ss_pred EEcChhhHHHH
Q 010509 268 YSGEASGAMNY 278 (508)
Q Consensus 268 ~~G~~~~~~~~ 278 (508)
+.++.+++.+.
T Consensus 222 E~~~~~~l~~~ 232 (252)
T COG1124 222 EIGPTEELLSH 232 (252)
T ss_pred EeechhhhhcC
Confidence 99999987655
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-48 Score=402.08 Aligned_cols=218 Identities=27% Similarity=0.408 Sum_probs=196.8
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..|+++|++++++ ++++|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.
T Consensus 13 ~~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~ 79 (375)
T PRK09452 13 PLVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDIT 79 (375)
T ss_pred ceEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 3699999999875 356999999999999999999999999999999999999999999999999875
Q ss_pred h--hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHH
Q 010509 117 N--QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 117 ~--~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 194 (508)
. ..++.+|||+|++.++|.+||+||+.|+...+ ..++.+.+++++++++.+||.+..++++ .+|||||||
T Consensus 80 ~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~Q 151 (375)
T PRK09452 80 HVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQQ 151 (375)
T ss_pred CCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHH
Confidence 3 23578999999999999999999999986532 2355566778999999999999888766 499999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
||+|||||+.+|++|||||||+|||..++..+.+.|++++++ |.|+|++|||+. ++..++|++++|++|+++..|+++
T Consensus 152 RVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~ 230 (375)
T PRK09452 152 RVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRDGRIEQDGTPR 230 (375)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999865 999999999986 578899999999999999999988
Q ss_pred hHH
Q 010509 274 GAM 276 (508)
Q Consensus 274 ~~~ 276 (508)
++.
T Consensus 231 ~i~ 233 (375)
T PRK09452 231 EIY 233 (375)
T ss_pred HHH
Confidence 763
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-48 Score=392.28 Aligned_cols=219 Identities=25% Similarity=0.417 Sum_probs=195.3
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
+.++++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 3 ~~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 69 (303)
T TIGR01288 3 VAIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVP 69 (303)
T ss_pred cEEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc
Confidence 4689999999875 356999999999999999999999999999999999999999999999999874
Q ss_pred h---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 117 N---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 117 ~---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
. ..++.+||++|++.+++.+||+||+.+..... ..+.++.+++++++++.++|.+..++.++ +||||||
T Consensus 70 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~~-----~LSgG~~ 141 (303)
T TIGR01288 70 SRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRVA-----LLSGGMK 141 (303)
T ss_pred ccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCchh-----hCCHHHH
Confidence 3 34678999999999999999999998755432 12344455678889999999988887775 8999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.++||++++|++|++++.|+++
T Consensus 142 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 220 (303)
T TIGR01288 142 RRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPH 220 (303)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999999999999999999999999999999999878999999999986 577899999999999999999998
Q ss_pred hHHH
Q 010509 274 GAMN 277 (508)
Q Consensus 274 ~~~~ 277 (508)
++.+
T Consensus 221 ~~~~ 224 (303)
T TIGR01288 221 ALID 224 (303)
T ss_pred HHHh
Confidence 8754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-48 Score=373.65 Aligned_cols=214 Identities=29% Similarity=0.458 Sum_probs=189.5
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
|+++|++++++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++..
T Consensus 1 i~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~ 67 (220)
T cd03265 1 IEVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE 67 (220)
T ss_pred CEEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC
Confidence 46789998874 3569999999999999999999999999999999999999999999999988642
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.++|++|++.+++.+||+||+.+....+ ..+.++..++++++++.+||.+..++.++ .||||||||
T Consensus 68 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 139 (220)
T cd03265 68 PREVRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLVK-----TYSGGMRRR 139 (220)
T ss_pred hHHHhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHHH
Confidence 34567999999999999999999998875442 12344455678999999999887777664 899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
++||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+...+|++++|++|+++..|++++
T Consensus 140 ~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 140 LEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred HHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHH
Confidence 99999999999999999999999999999999999999876 899999999986 5778899999999999999988765
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-48 Score=392.83 Aligned_cols=208 Identities=27% Similarity=0.424 Sum_probs=187.6
Q ss_pred ccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh---hccccEEEEecCCCCCCCCCH
Q 010509 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN---QMTRNTGFVTQEDVLSPYLTV 138 (508)
Q Consensus 62 ~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~---~~~~~i~yv~Q~~~l~~~lTv 138 (508)
+++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ..++.+||++|++.+++.+||
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 83 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTG 83 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcH
Confidence 35679999999999999999999999999999999999999999999999998743 346679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 010509 139 TETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGL 218 (508)
Q Consensus 139 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgL 218 (508)
+||+.+.+..+ ..+..+..++++++++.+||.+..++.++ +|||||||||+||+||+.+|++|+|||||+||
T Consensus 84 ~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 155 (302)
T TIGR01188 84 RENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGL 155 (302)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 99999876543 23344556678999999999988887765 89999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHHHH
Q 010509 219 DSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNY 278 (508)
Q Consensus 219 D~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~~ 278 (508)
|+.++..+++.|++++++|+|||++||+++ ++.++||++++|++|++++.|+++++.+-
T Consensus 156 D~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 156 DPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999877999999999986 67889999999999999999999887654
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-48 Score=371.70 Aligned_cols=210 Identities=31% Similarity=0.485 Sum_probs=184.6
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~ 67 (213)
T cd03259 1 LELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGV 67 (213)
T ss_pred CeeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcC
Confidence 46789998875 3569999999999999999999999999999999999999999999999998743
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH
Q 010509 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 -~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 196 (508)
..++.++|++|++.+++.+|++||+.+..... ....++.+++++++++.+||.+..++.+. .||||||||+
T Consensus 68 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl 139 (213)
T cd03259 68 PPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYPH-----ELSGGQQQRV 139 (213)
T ss_pred chhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcChh-----hCCHHHHHHH
Confidence 23567999999999999999999998865432 12344455678899999999987777664 8999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.++||++++|++|++++.|
T Consensus 140 ~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 140 ALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999986 4899999999986 577899999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-48 Score=376.16 Aligned_cols=219 Identities=28% Similarity=0.472 Sum_probs=196.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC-
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS- 116 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~- 116 (508)
.++++|++|+++. .+.+|+|+|+++++||.++|+|+||||||||+++|+|+++|++|+|.++|.+..
T Consensus 3 ~i~~~~l~~~y~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~ 70 (235)
T COG1122 3 MIEAENLSFRYPG------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSS 70 (235)
T ss_pred eEEEEEEEEEcCC------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccc
Confidence 5889999999762 257999999999999999999999999999999999999999999999999865
Q ss_pred -h---hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 117 -N---QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 117 -~---~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
. ..++.+|||+|++ .++. -||.|.+.|+.... ..++++.+++++++++.+|+.+.+++.+ ..|||
T Consensus 71 ~~~~~~~~~~vG~VfQnpd~q~~~-~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----~~LSG 141 (235)
T COG1122 71 EKSLLELRQKVGLVFQNPDDQLFG-PTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRPP-----FNLSG 141 (235)
T ss_pred hhhHHHhhcceEEEEECccccccc-CcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCCc-----cccCC
Confidence 1 5788999999997 4444 59999999987543 4567788999999999999999987655 59999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
||||||+||.+|+.+|++|+|||||||||+.++.++++.+++|.++ |+|+|++|||.+ .+..++||+++|++|+++++
T Consensus 142 GqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~G~i~~~ 220 (235)
T COG1122 142 GQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDDGKILAD 220 (235)
T ss_pred cceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEECCEEeec
Confidence 9999999999999999999999999999999999999999999877 799999999986 57789999999999999999
Q ss_pred cChhhHHHH
Q 010509 270 GEASGAMNY 278 (508)
Q Consensus 270 G~~~~~~~~ 278 (508)
|++.++.+-
T Consensus 221 g~p~~i~~~ 229 (235)
T COG1122 221 GDPAEIFND 229 (235)
T ss_pred CCHHHHhhh
Confidence 998776543
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=398.69 Aligned_cols=219 Identities=24% Similarity=0.402 Sum_probs=197.1
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..|+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.
T Consensus 18 ~~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~ 84 (377)
T PRK11607 18 PLLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLS 84 (377)
T ss_pred ceEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 3699999999875 356999999999999999999999999999999999999999999999999875
Q ss_pred h--hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHH
Q 010509 117 N--QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 117 ~--~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 194 (508)
. ..++.+|||+|++.+||.+||.||+.|+...+ ..++.+.+++++++++.+||.+..++.+ ++|||||||
T Consensus 85 ~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~Q 156 (377)
T PRK11607 85 HVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQRQ 156 (377)
T ss_pred CCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHH
Confidence 3 34678999999999999999999999986543 2355667788999999999998887765 499999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
||+|||||+.+|++|||||||++||..++..+.+.|+++.+ .|.|+|++|||++ ++..++||+++|++|+++..|+++
T Consensus 157 RVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~ 235 (377)
T PRK11607 157 RVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPE 235 (377)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHH
Confidence 99999999999999999999999999999999999999875 4999999999986 578999999999999999999998
Q ss_pred hHHH
Q 010509 274 GAMN 277 (508)
Q Consensus 274 ~~~~ 277 (508)
++.+
T Consensus 236 ~~~~ 239 (377)
T PRK11607 236 EIYE 239 (377)
T ss_pred HHHh
Confidence 7643
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=399.05 Aligned_cols=217 Identities=28% Similarity=0.445 Sum_probs=194.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++|++++++ ++.+|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~ 69 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMND 69 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCC
Confidence 488999999875 3569999999999999999999999999999999999999999999999998753
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.++||+|+..+++.+||+||+.|....+ ..+.++.+++++++++.+||.+..++.++ +||||||||
T Consensus 70 ~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~~-----~LSgGq~QR 141 (369)
T PRK11000 70 VPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQR 141 (369)
T ss_pred CCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHH
Confidence 23567999999999999999999999876533 23455566789999999999988887764 899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++|||++ ++..++|++++|++|+++..|++++
T Consensus 142 vaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~ 220 (369)
T PRK11000 142 VAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLE 220 (369)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999765 899999999986 5778999999999999999999887
Q ss_pred HH
Q 010509 275 AM 276 (508)
Q Consensus 275 ~~ 276 (508)
+.
T Consensus 221 i~ 222 (369)
T PRK11000 221 LY 222 (369)
T ss_pred HH
Confidence 64
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=376.11 Aligned_cols=219 Identities=25% Similarity=0.396 Sum_probs=190.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~ 68 (239)
T cd03296 2 SIEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATD 68 (239)
T ss_pred EEEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCc
Confidence 588999999875 3569999999999999999999999999999999999999999999999998743
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP-NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 194 (508)
..++.++|++|++.+++.+||+||+.+....+.. ......+..++++++++.+||.+..++.++ +|||||||
T Consensus 69 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 143 (239)
T cd03296 69 VPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPA-----QLSGGQRQ 143 (239)
T ss_pred CCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChh-----hCCHHHHH
Confidence 2346799999999999999999999886543211 001233445678899999999887777664 89999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
|++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+...+|++++|++|++++.|+++
T Consensus 144 rl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 222 (239)
T cd03296 144 RVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPD 222 (239)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHH
Confidence 999999999999999999999999999999999999999875 899999999986 577889999999999999999987
Q ss_pred hH
Q 010509 274 GA 275 (508)
Q Consensus 274 ~~ 275 (508)
+.
T Consensus 223 ~~ 224 (239)
T cd03296 223 EV 224 (239)
T ss_pred HH
Confidence 65
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=371.48 Aligned_cols=208 Identities=27% Similarity=0.462 Sum_probs=182.8
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++. +.+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~ 70 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRL 70 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhc
Confidence 789999998741 02469999999999999999999999999999999999999999999999998742
Q ss_pred ------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 118 ------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 118 ------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
..++.++|++|++.+++.+||.||+.+....+ ....++..++++++++.+||.+..++.++ +||||
T Consensus 71 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 142 (216)
T TIGR00960 71 RGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALPM-----QLSGG 142 (216)
T ss_pred ChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHH
Confidence 14568999999999999999999999875432 12334455678999999999887777664 89999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+..+||++++|++|++
T Consensus 143 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 143 EQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999999999877999999999986 57788999999999974
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=388.18 Aligned_cols=218 Identities=22% Similarity=0.396 Sum_probs=195.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++ ++.+|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~ 68 (301)
T TIGR03522 2 SIRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ 68 (301)
T ss_pred EEEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc
Confidence 478999999875 3579999999999999999999999999999999999999999999999998753
Q ss_pred ---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHH
Q 010509 118 ---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 118 ---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 194 (508)
..++.+||++|++.+++.+||.||+.+.+.++ ..+.++..++++++++.+||.+..++.++ .|||||||
T Consensus 69 ~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~q 140 (301)
T TIGR03522 69 NPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKIG-----QLSKGYRQ 140 (301)
T ss_pred ChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCchh-----hCCHHHHH
Confidence 34678999999999999999999999876553 22344556678999999999998887775 89999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
|++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++|||+++|++|++++.|++++
T Consensus 141 rv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~ 218 (301)
T TIGR03522 141 RVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDE 218 (301)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999965 799999999986 5889999999999999999999998
Q ss_pred HHHH
Q 010509 275 AMNY 278 (508)
Q Consensus 275 ~~~~ 278 (508)
....
T Consensus 219 ~~~~ 222 (301)
T TIGR03522 219 LSAA 222 (301)
T ss_pred HHHh
Confidence 7653
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=374.41 Aligned_cols=218 Identities=25% Similarity=0.450 Sum_probs=189.1
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ ++.+|+|+|+++++||+++|+|||||||||||++|+|+++|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~ 67 (236)
T cd03219 1 LEVRGLTKRFG-------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGL 67 (236)
T ss_pred CeeeeeEEEEC-------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCC
Confidence 46789988864 3569999999999999999999999999999999999999999999999998753
Q ss_pred ---h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCC-------CCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 010509 118 ---Q-MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNS-------FTEKEKIKCAEAVMTELGLSECKNSLIGGPLTR 186 (508)
Q Consensus 118 ---~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 186 (508)
. .++.++|++|++.+++.+||+||+.+......... ....+..++++++++.+||.+..++.+ +
T Consensus 68 ~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (236)
T cd03219 68 PPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA-----G 142 (236)
T ss_pred CHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----h
Confidence 1 24569999999999999999999988754321110 023344567889999999988777665 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+++|++++|++|++
T Consensus 143 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i 221 (236)
T cd03219 143 ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQGRV 221 (236)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeCCEE
Confidence 89999999999999999999999999999999999999999999999877999999999986 57788999999999999
Q ss_pred EEEcChhhH
Q 010509 267 LYSGEASGA 275 (508)
Q Consensus 267 v~~G~~~~~ 275 (508)
+..|++++.
T Consensus 222 ~~~~~~~~~ 230 (236)
T cd03219 222 IAEGTPDEV 230 (236)
T ss_pred EeecCHHHh
Confidence 999988765
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-47 Score=393.40 Aligned_cols=221 Identities=24% Similarity=0.377 Sum_probs=194.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++|++++++.. ..++++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 1 mi~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~ 71 (343)
T PRK11153 1 MIELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTA 71 (343)
T ss_pred CEEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCc
Confidence 37899999987511 013579999999999999999999999999999999999999999999999998752
Q ss_pred -------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 118 -------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 -------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
..++.+|||+|++.+++.+||+||+.+....+ ..++++.+++++++++.+||.+..++.+ ++|||
T Consensus 72 ~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (343)
T PRK11153 72 LSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYP-----AQLSG 143 (343)
T ss_pred CCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCH
Confidence 13568999999999999999999999876443 2344555678899999999998877765 48999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ .+.++||++++|++|++++.
T Consensus 144 Gq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~ 222 (343)
T PRK11153 144 GQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQ 222 (343)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999764 899999999986 57789999999999999999
Q ss_pred cChhhHH
Q 010509 270 GEASGAM 276 (508)
Q Consensus 270 G~~~~~~ 276 (508)
|+++++.
T Consensus 223 g~~~~~~ 229 (343)
T PRK11153 223 GTVSEVF 229 (343)
T ss_pred cCHHHHH
Confidence 9988764
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-48 Score=362.71 Aligned_cols=232 Identities=25% Similarity=0.404 Sum_probs=200.6
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEE
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITY 110 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~ 110 (508)
...++++||++.|+ ++++|+|||+.|++++++|++||||||||||||++..+.. ..+|+|.+
T Consensus 5 ~~~~~~~~l~~yYg-------------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~ 71 (253)
T COG1117 5 IPAIEVRDLNLYYG-------------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLL 71 (253)
T ss_pred cceeEecceeEEEC-------------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEE
Confidence 34689999999976 5789999999999999999999999999999999998763 35799999
Q ss_pred CCEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCC
Q 010509 111 NGKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGP 183 (508)
Q Consensus 111 ~G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~ 183 (508)
+|+++.. ++|+++|+|+|.+..|| +|++||+.++.++.. ..+++.+++|++.|+...|- +..|++- .
T Consensus 72 ~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~AaLWdEVKDrL~--~ 145 (253)
T COG1117 72 DGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAALWDEVKDRLH--K 145 (253)
T ss_pred CCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhHhHHHhHHHhh--C
Confidence 9999843 57899999999999999 899999999987652 22367778899999999884 4455542 3
Q ss_pred CCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 184 LTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 184 ~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
...+||||||||++|||||+.+|+|||||||||+|||.+..+|-+++.+|+ +.-|||++||.+. .+.+..|+..++..
T Consensus 146 sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~ 223 (253)
T COG1117 146 SALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL 223 (253)
T ss_pred CccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc
Confidence 345899999999999999999999999999999999999999999999998 4689999999997 57799999999999
Q ss_pred CeEEEEcChhhHHHHHHhcCCCCCCCCChHHHH
Q 010509 264 GYPLYSGEASGAMNYFASIGYCPSVPTNPSDFL 296 (508)
Q Consensus 264 G~iv~~G~~~~~~~~f~~~g~~~p~~~npad~~ 296 (508)
|+++++|+++++. .-|.++-+.||+
T Consensus 224 G~LvE~g~T~~iF--------~~P~~~~TedYi 248 (253)
T COG1117 224 GELVEFGPTDKIF--------TNPKHKRTEDYI 248 (253)
T ss_pred cEEEEEcCHHhhh--------cCccHHHHHHHh
Confidence 9999999998763 346666667775
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-47 Score=368.00 Aligned_cols=210 Identities=29% Similarity=0.523 Sum_probs=185.9
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChh
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ 118 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~ 118 (508)
++++|+++.++ ++.+++|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~ 67 (210)
T cd03269 1 LEVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIA 67 (210)
T ss_pred CEEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHH
Confidence 46789998864 35699999999999999999999999999999999999999999999999987655
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHH
Q 010509 119 MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSI 198 (508)
Q Consensus 119 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 198 (508)
.++.++|++|++.+++.+|++||+.+....+ ..+..+..++++++++.+|+.+..++.+ ++||||||||++|
T Consensus 68 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~l 139 (210)
T cd03269 68 ARNRIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKVQF 139 (210)
T ss_pred HHccEEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHHHH
Confidence 5678999999999999999999998865443 1233445567889999999988777665 4899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 199 GQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 199 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
|++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+++|++++|++|++++.|
T Consensus 140 a~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 140 IAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999877899999999986 577889999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-47 Score=372.14 Aligned_cols=216 Identities=27% Similarity=0.478 Sum_probs=189.7
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ ++.+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~ 67 (232)
T cd03218 1 LRAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKL 67 (232)
T ss_pred CeEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccC
Confidence 46789998875 3569999999999999999999999999999999999999999999999998642
Q ss_pred ---h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 118 ---Q-MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 118 ---~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
. .++.++|++|++.+++.+|++||+.+....+ .....+..++++++++.+|+.+..++.+. .||||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~ 139 (232)
T cd03218 68 PMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSKAS-----SLSGGER 139 (232)
T ss_pred CHhHHHhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHH
Confidence 1 2357999999999999999999998865332 12334455678899999999887777664 8999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+++|++++|++|+++..|+++
T Consensus 140 qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 218 (232)
T cd03218 140 RRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPE 218 (232)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHH
Confidence 9999999999999999999999999999999999999999877999999999986 577899999999999999999887
Q ss_pred hHH
Q 010509 274 GAM 276 (508)
Q Consensus 274 ~~~ 276 (508)
+..
T Consensus 219 ~~~ 221 (232)
T cd03218 219 EIA 221 (232)
T ss_pred Hhh
Confidence 653
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-47 Score=382.49 Aligned_cols=241 Identities=27% Similarity=0.364 Sum_probs=202.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++|+++.++... ...+.+|+|||+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 1 mi~~~~v~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~ 72 (288)
T PRK13643 1 MIKFEKVNYTYQPNS--------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSS 72 (288)
T ss_pred CEEEEEEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECcc
Confidence 378999999985210 012469999999999999999999999999999999999999999999999998741
Q ss_pred --------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 010509 118 --------QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTR 186 (508)
Q Consensus 118 --------~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 186 (508)
..++.+|||+|++ .+++ .||.|++.|+.... ..++++.++++.++++.+||. +..++.+ +
T Consensus 73 ~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~ 143 (288)
T PRK13643 73 TSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKSP-----F 143 (288)
T ss_pred ccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCCc-----c
Confidence 3467899999986 5565 69999999875432 234566677889999999996 4556554 5
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+..+|||+++|++|++
T Consensus 144 ~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~G~i 222 (288)
T PRK13643 144 ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEKGHI 222 (288)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999877999999999986 57788999999999999
Q ss_pred EEEcChhhHH---HHHHhcCCCCCCCCChHHHH
Q 010509 267 LYSGEASGAM---NYFASIGYCPSVPTNPSDFL 296 (508)
Q Consensus 267 v~~G~~~~~~---~~f~~~g~~~p~~~npad~~ 296 (508)
++.|++++.. +.+...|+.+|.....++.+
T Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 223 ISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred EEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 9999998874 34556788777655555544
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-47 Score=368.73 Aligned_cols=216 Identities=30% Similarity=0.499 Sum_probs=187.2
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChh
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ 118 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~ 118 (508)
++++|++++++.. ...+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~- 70 (220)
T cd03293 1 LEVRNVSKTYGGG---------GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG- 70 (220)
T ss_pred CeEEEEEEEcCCC---------CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-
Confidence 4678999887511 012579999999999999999999999999999999999999999999999998753
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHH
Q 010509 119 MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSI 198 (508)
Q Consensus 119 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 198 (508)
.++.++|++|++.+++.+|++||+.+....+ ..+.++..++++++++.+||.+..++.++ +||||||||++|
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~l 142 (220)
T cd03293 71 PGPDRGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYPH-----QLSGGMRQRVAL 142 (220)
T ss_pred ccCcEEEEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCcc-----cCCHHHHHHHHH
Confidence 4567999999999999999999998875432 12334455678899999999887777664 899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEe--CCeEEEEcChh
Q 010509 199 GQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLS--EGYPLYSGEAS 273 (508)
Q Consensus 199 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~--~G~iv~~G~~~ 273 (508)
|++|+.+|++++|||||+|||+.++..+.+.|+++.+ .|+|||++||+++ .+..++|++++|+ +|+++..++.+
T Consensus 143 a~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 143 ARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999999999965 5899999999986 5678899999999 79999888754
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-48 Score=368.22 Aligned_cols=222 Identities=28% Similarity=0.486 Sum_probs=210.1
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|++++++++++ ++++++|+||+++||+|++++|||||||||.+|+|.|++.|++|+|.++|.+++.
T Consensus 2 ~L~ie~vtK~Fg-------------~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~ 68 (300)
T COG4152 2 ALEIEGVTKSFG-------------DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ 68 (300)
T ss_pred ceEEecchhccC-------------ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh
Confidence 578899988865 6889999999999999999999999999999999999999999999999999988
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVS 197 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 197 (508)
..+.+|||+|++..|||.+||.|.+.|.|.++ ++++++.++.++.+|+.+++.....++|. +||.|++|++.
T Consensus 69 ~~~~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kIk-----~LSKGnqQKIQ 140 (300)
T COG4152 69 EIKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKIK-----ELSKGNQQKIQ 140 (300)
T ss_pred hhhhhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchHH-----HhhhhhhHHHH
Confidence 88889999999999999999999999999886 67888999999999999999998888774 99999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHHH
Q 010509 198 IGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMN 277 (508)
Q Consensus 198 Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~ 277 (508)
+..+++++|++++||||+|||||.+.+.+.+.+.+++++|.|||+|+|.++ .+.++||++++|++|+.|.+|+.+++..
T Consensus 141 fisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 141 FISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred HHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecCCceEEeccHHHHHH
Confidence 999999999999999999999999999999999999999999999999997 6899999999999999999999999988
Q ss_pred HHHh
Q 010509 278 YFAS 281 (508)
Q Consensus 278 ~f~~ 281 (508)
-|..
T Consensus 220 ~~Gk 223 (300)
T COG4152 220 SFGK 223 (300)
T ss_pred hcCC
Confidence 6654
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-49 Score=363.90 Aligned_cols=220 Identities=25% Similarity=0.445 Sum_probs=198.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|..+||.++|+ ++++++|||++|++||+++++|||||||||.+.++.|+.+|++|+|.++|.+++.
T Consensus 4 ~L~a~~l~K~y~-------------kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~ 70 (243)
T COG1137 4 TLVAENLAKSYK-------------KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITK 70 (243)
T ss_pred EEEehhhhHhhC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCccccc
Confidence 577888887765 6889999999999999999999999999999999999999999999999999875
Q ss_pred -----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 -----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 -----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
..|..+||+||++..|..|||+||+......+.. ...+.+++++++++|++|+|.|.++++-. +|||||
T Consensus 71 lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a~-----sLSGGE 144 (243)
T COG1137 71 LPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKAY-----SLSGGE 144 (243)
T ss_pred CChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCccc-----ccccch
Confidence 2355799999999999999999999987765531 22345666778999999999999998764 899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
|||+.|||||+.+|+.++||||++|.||.+..+|.++++.|++.|.-|++|-|+..+ ....|||.+++++|++..+|+|
T Consensus 145 RRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVRE-tL~i~dRaYIi~~G~vla~G~p 223 (243)
T COG1137 145 RRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRE-TLDICDRAYIISDGKVLAEGSP 223 (243)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHH-HHhhhheEEEEecCeEEecCCH
Confidence 999999999999999999999999999999999999999999999999999999984 6799999999999999999999
Q ss_pred hhHHH
Q 010509 273 SGAMN 277 (508)
Q Consensus 273 ~~~~~ 277 (508)
+++.+
T Consensus 224 ~ei~~ 228 (243)
T COG1137 224 EEIVN 228 (243)
T ss_pred HHHhc
Confidence 98753
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-47 Score=366.88 Aligned_cols=210 Identities=27% Similarity=0.451 Sum_probs=185.1
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ ++++|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~ 67 (213)
T cd03301 1 VELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDL 67 (213)
T ss_pred CEEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC
Confidence 46789998875 3569999999999999999999999999999999999999999999999998743
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH
Q 010509 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 -~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 196 (508)
..++.++|++|++.+++.+|++||+.+....+ ....++.+++++++++.+|+.+..++.++ .||||||||+
T Consensus 68 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr~ 139 (213)
T cd03301 68 PPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKPK-----QLSGGQRQRV 139 (213)
T ss_pred CcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCChh-----hCCHHHHHHH
Confidence 23457999999999999999999998865432 22344556678899999999887777664 8999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+++|++++|++|++++.|
T Consensus 140 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 140 ALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999864 899999999986 577889999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-47 Score=368.33 Aligned_cols=214 Identities=29% Similarity=0.471 Sum_probs=187.3
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++.. ....++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~ 72 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKE 72 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccC
Confidence 7889999987511 011269999999999999999999999999999999999999999999999998753
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.++|++|++.+++.+||+||+.+....+ ..+..+..++++++++.+||.+..++.++ .||||||||
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 144 (218)
T cd03266 73 PAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVG-----GFSTGMRQK 144 (218)
T ss_pred HHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhhh-----hcCHHHHHH
Confidence 34678999999999999999999998765432 23344556788999999999988777664 899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+..++|++++|++|++++.|
T Consensus 145 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 145 VAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999999999877999999999986 577889999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-47 Score=368.76 Aligned_cols=216 Identities=29% Similarity=0.457 Sum_probs=188.9
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
|+++|+++.++. ..+++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~ 69 (220)
T cd03263 1 LQIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD 69 (220)
T ss_pred CEEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc
Confidence 467899988751 01579999999999999999999999999999999999999999999999998743
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.++|++|++.+++.+|++||+.+....+ ..+.++..++++++++.+||.+..++.++ +||||||||
T Consensus 70 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 141 (220)
T cd03263 70 RKAARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRAR-----TLSGGMKRK 141 (220)
T ss_pred hHHHhhhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChhh-----hCCHHHHHH
Confidence 34567999999999999999999998865433 12334445678899999999887777664 899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+++|++++|++|++++.|+++++
T Consensus 142 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 142 LSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999999999999976 599999999987 57788999999999999999987754
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-47 Score=371.60 Aligned_cols=219 Identities=24% Similarity=0.379 Sum_probs=190.5
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|+++.++.. .+.+++|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~ 72 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLL 72 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccC
Confidence 7889999987510 001379999999999999999999999999999999999999999999999998742
Q ss_pred ------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 118 ------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 118 ------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
..++.++|++|++.+++.+|++||+.+....+ .....+..+.++++++.+||.+..++.+ +.||||
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 144 (233)
T cd03258 73 SGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAYP-----AQLSGG 144 (233)
T ss_pred CHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCCHH
Confidence 13567999999999999999999998865432 1234445567889999999988777665 489999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+..++|++++|++|+++..|
T Consensus 145 ~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 223 (233)
T cd03258 145 QKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEKGEVVEEG 223 (233)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999999999999875 899999999986 577889999999999999999
Q ss_pred ChhhH
Q 010509 271 EASGA 275 (508)
Q Consensus 271 ~~~~~ 275 (508)
++++.
T Consensus 224 ~~~~~ 228 (233)
T cd03258 224 TVEEV 228 (233)
T ss_pred CHHHH
Confidence 87765
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-47 Score=393.43 Aligned_cols=207 Identities=23% Similarity=0.377 Sum_probs=187.3
Q ss_pred cccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh----hc----cccEEEEecCCCC
Q 010509 61 IEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----QM----TRNTGFVTQEDVL 132 (508)
Q Consensus 61 ~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~----~~----~~~i~yv~Q~~~l 132 (508)
++.+.+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. .. ++.++||+|++.+
T Consensus 3 ~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 3 TGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred cCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 446789999999999999999999999999999999999999999999999999853 22 5689999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 010509 133 SPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLD 212 (508)
Q Consensus 133 ~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLD 212 (508)
+|.+||+||+.+..... ..++++..+++.++++.+||++..+++++ +|||||||||+|||||+.+|++||||
T Consensus 83 ~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p~-----~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 83 FPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYPD-----ELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999876543 34566677889999999999888877664 89999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHH
Q 010509 213 EPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 213 EPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~ 276 (508)
|||++||+.++.++.+.|+++.++ |+|||++|||++ ++.+++||+++|++|+++..|+++++.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 999999999999999999999764 899999999986 477899999999999999999988764
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=380.35 Aligned_cols=234 Identities=24% Similarity=0.402 Sum_probs=196.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++||++.++... ...+.+|+||||++++||++||+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 73 (287)
T PRK13637 2 SIKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITD 73 (287)
T ss_pred EEEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCC
Confidence 488999999875210 012469999999999999999999999999999999999999999999999998742
Q ss_pred ------hccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC--cccccccCCCCCCcc
Q 010509 118 ------QMTRNTGFVTQEDV-LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS--ECKNSLIGGPLTRGV 188 (508)
Q Consensus 118 ------~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~vg~~~~~~L 188 (508)
..++.+|||+|++. .+...||+||+.+..... ..++++..++++++++.+||. +..|+.+ +.|
T Consensus 74 ~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~~L 145 (287)
T PRK13637 74 KKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSP-----FEL 145 (287)
T ss_pred cCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCc-----ccC
Confidence 34578999999863 233579999999865432 245666677899999999997 5566555 599
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 189 SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 189 SGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
|||||||++||+||+.+|++|+|||||+|||+.++.++++.|++++++ |+|||++|||++ .+..+|||+++|++|+++
T Consensus 146 SgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~G~i~ 224 (287)
T PRK13637 146 SGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNKGKCE 224 (287)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999865 999999999986 567889999999999999
Q ss_pred EEcChhhHHH---HHHhcCCCCCC
Q 010509 268 YSGEASGAMN---YFASIGYCPSV 288 (508)
Q Consensus 268 ~~G~~~~~~~---~f~~~g~~~p~ 288 (508)
+.|++++..+ .....|+..|.
T Consensus 225 ~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 225 LQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EECCHHHHHhCHHHHHHcCCCCCh
Confidence 9999988743 23445655443
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-47 Score=372.20 Aligned_cols=220 Identities=26% Similarity=0.462 Sum_probs=187.3
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~ 68 (241)
T cd03256 1 IEVENLSKTYPN------------GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKL 68 (241)
T ss_pred CEEeeEEEecCC------------ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEecccc
Confidence 467899887641 1569999999999999999999999999999999999999999999999998742
Q ss_pred ------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 010509 118 ------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQL-----PNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTR 186 (508)
Q Consensus 118 ------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 186 (508)
..++.++|++|++.+++.+||+||+.+...... .......+..++++++++.+||.+..++.+ +
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 143 (241)
T cd03256 69 KGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA-----D 143 (241)
T ss_pred CHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc-----c
Confidence 235679999999999999999999987532110 001112234567888999999987777655 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+..++|++++|++|+
T Consensus 144 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G~ 222 (241)
T cd03256 144 QLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDGR 222 (241)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999999764 899999999987 5778999999999999
Q ss_pred EEEEcChhhHH
Q 010509 266 PLYSGEASGAM 276 (508)
Q Consensus 266 iv~~G~~~~~~ 276 (508)
+++.|++++..
T Consensus 223 i~~~~~~~~~~ 233 (241)
T cd03256 223 IVFDGPPAELT 233 (241)
T ss_pred EEeecCHHHhh
Confidence 99999987753
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=370.52 Aligned_cols=217 Identities=26% Similarity=0.479 Sum_probs=190.6
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~ 68 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDP 68 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC
Confidence 78899999874 3569999999999999999999999999999999999999999999999998742
Q ss_pred -----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 -----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 -----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
..++.++|++|++.+++.+||+||+.+..... ......+..++++++++.+||++..++.+ +.|||||
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~ 141 (240)
T PRK09493 69 KVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHHYP-----SELSGGQ 141 (240)
T ss_pred ChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCHHH
Confidence 23567999999999999999999998764211 12234455667889999999988777665 4899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
|||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+..++|++++|++|++++.|++
T Consensus 142 ~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~ 220 (240)
T PRK09493 142 QQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDP 220 (240)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCH
Confidence 99999999999999999999999999999999999999999877999999999986 57788999999999999999998
Q ss_pred hhHH
Q 010509 273 SGAM 276 (508)
Q Consensus 273 ~~~~ 276 (508)
++..
T Consensus 221 ~~~~ 224 (240)
T PRK09493 221 QVLI 224 (240)
T ss_pred HHHh
Confidence 7653
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=372.38 Aligned_cols=217 Identities=29% Similarity=0.484 Sum_probs=190.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 69 (250)
T PRK11264 3 AIEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDT 69 (250)
T ss_pred cEEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccc
Confidence 589999999875 3569999999999999999999999999999999999999999999999988641
Q ss_pred ------------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 010509 118 ------------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT 185 (508)
Q Consensus 118 ------------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 185 (508)
..++.++|++|++.+++.+|+.||+.+...... ....++..++++++++.+||.+..++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 142 (250)
T PRK11264 70 ARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYP----- 142 (250)
T ss_pred cccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCCh-----
Confidence 235679999999999999999999987543211 1234455567889999999988777655
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
++||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++ .+.+++|++++|++|+
T Consensus 143 ~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~ 221 (250)
T PRK11264 143 RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQGR 221 (250)
T ss_pred hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCE
Confidence 489999999999999999999999999999999999999999999999877999999999986 5778899999999999
Q ss_pred EEEEcChhhH
Q 010509 266 PLYSGEASGA 275 (508)
Q Consensus 266 iv~~G~~~~~ 275 (508)
+++.|++++.
T Consensus 222 i~~~~~~~~~ 231 (250)
T PRK11264 222 IVEQGPAKAL 231 (250)
T ss_pred EEEeCCHHHH
Confidence 9999998765
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-47 Score=396.63 Aligned_cols=219 Identities=25% Similarity=0.424 Sum_probs=193.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++||+++++ ++++|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 3 ~L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~ 69 (402)
T PRK09536 3 MIDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEA 69 (402)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCc
Confidence 589999999875 4679999999999999999999999999999999999999999999999998753
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPN-SFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
+.++.+|||+|++.+++.+||+|++.++....... ....++.+++++++++.+|+.+..++.+. +|||||
T Consensus 70 ~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~-----~LSgGe 144 (402)
T PRK09536 70 LSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVT-----SLSGGE 144 (402)
T ss_pred CCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHH
Confidence 45678999999999999999999998864211100 00123445678999999999988887764 899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
|||++|||+|+++|++|+|||||+|||+.++.+++++|++++++|+|||+++|+++ .+.++|||+++|++|++++.|++
T Consensus 145 rQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~G~iv~~G~~ 223 (402)
T PRK09536 145 RQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLADGRVRAAGPP 223 (402)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999999877999999999986 57789999999999999999999
Q ss_pred hhH
Q 010509 273 SGA 275 (508)
Q Consensus 273 ~~~ 275 (508)
+++
T Consensus 224 ~ev 226 (402)
T PRK09536 224 ADV 226 (402)
T ss_pred HHH
Confidence 875
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=376.08 Aligned_cols=229 Identities=25% Similarity=0.384 Sum_probs=194.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 71 (274)
T PRK13647 4 IIEVEDLHFRYKD------------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNA 71 (274)
T ss_pred eEEEEEEEEEeCC------------CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCC
Confidence 5899999998741 2469999999999999999999999999999999999999999999999998743
Q ss_pred ----hccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 ----QMTRNTGFVTQEDV-LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
..++.++|++|++. .++..||.||+.+..... ..++.+.+++++++++.+||.+..++.+. .|||||
T Consensus 72 ~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgG~ 143 (274)
T PRK13647 72 ENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPPY-----HLSYGQ 143 (274)
T ss_pred CCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCChh-----hCCHHH
Confidence 34567999999963 445689999998864321 23444556678999999999888777664 899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
|||++||+||+.+|++|+|||||+|||+.++.++++.|++++++|+|||++||+++ .+.++|||+++|++|++++.|++
T Consensus 144 ~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~ 222 (274)
T PRK13647 144 KKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDK 222 (274)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999877999999999986 56788999999999999999998
Q ss_pred hhHH--HHHHhcCCCCC
Q 010509 273 SGAM--NYFASIGYCPS 287 (508)
Q Consensus 273 ~~~~--~~f~~~g~~~p 287 (508)
++.. +.+...|..+|
T Consensus 223 ~~~~~~~~~~~~~~~~~ 239 (274)
T PRK13647 223 SLLTDEDIVEQAGLRLP 239 (274)
T ss_pred HHhcCHHHHHHcCCCCC
Confidence 7542 23444555543
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-47 Score=369.02 Aligned_cols=215 Identities=25% Similarity=0.374 Sum_probs=185.3
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC-----CCcccEEEECCE
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL-----GRINGRITYNGK 113 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~-----~~~~G~I~~~G~ 113 (508)
|+++|++++++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+. +|++|+|.++|+
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 67 (227)
T cd03260 1 IELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGK 67 (227)
T ss_pred CEEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCE
Confidence 46789988864 357999999999999999999999999999999999999 899999999999
Q ss_pred eCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCc
Q 010509 114 PFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRG 187 (508)
Q Consensus 114 ~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 187 (508)
++.. ..++.++|++|++.++ .+||+||+.+....+. .....+..++++++++.+||.+..++.+. +++
T Consensus 68 ~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~ 141 (227)
T cd03260 68 DIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALG 141 (227)
T ss_pred EhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---ccc
Confidence 8642 2456799999999888 7999999988654321 11222345678899999999877665530 358
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||+++ .+.++||++++|++|+++
T Consensus 142 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~G~i~ 219 (227)
T cd03260 142 LSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLNGRLV 219 (227)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999999999999999999999999999999877 99999999986 577889999999999999
Q ss_pred EEcChhh
Q 010509 268 YSGEASG 274 (508)
Q Consensus 268 ~~G~~~~ 274 (508)
+.|++++
T Consensus 220 ~~g~~~~ 226 (227)
T cd03260 220 EFGPTEQ 226 (227)
T ss_pred EecCccc
Confidence 9998765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-47 Score=366.21 Aligned_cols=222 Identities=25% Similarity=0.434 Sum_probs=200.1
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..+++++|+++++ ..++++|||+++++||+++|+||||||||||+|+|+|.++|++|+|.++|++++
T Consensus 3 ~lL~v~~l~k~FG-------------Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it 69 (250)
T COG0411 3 PLLEVRGLSKRFG-------------GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDIT 69 (250)
T ss_pred ceeeeccceeecC-------------CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccC
Confidence 3588999998875 578999999999999999999999999999999999999999999999999986
Q ss_pred h-----hccccEEEEecCCCCCCCCCHHHHHHHHHHhc--------CCCC-CCHHHHHHHHHHHHHHcCCCcccccccCC
Q 010509 117 N-----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQ--------LPNS-FTEKEKIKCAEAVMTELGLSECKNSLIGG 182 (508)
Q Consensus 117 ~-----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~--------~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 182 (508)
. ..+..++--||...+|+.|||.||+..++..+ .+.. ..+++..+++.++|+.+||.+.+|+..|
T Consensus 70 ~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~- 148 (250)
T COG0411 70 GLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG- 148 (250)
T ss_pred CCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-
Confidence 4 23567899999999999999999999876533 1111 2356677889999999999999999987
Q ss_pred CCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEE
Q 010509 183 PLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 183 ~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
+||+|||||+.|||||+++|++|+||||.+||.+....++.+.++++++ .|.||+++.||+. .+..+||||++|
T Consensus 149 ----~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl 223 (250)
T COG0411 149 ----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVL 223 (250)
T ss_pred ----cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEec
Confidence 8999999999999999999999999999999999999999999999987 4799999999997 688999999999
Q ss_pred eCCeEEEEcChhhHHH
Q 010509 262 SEGYPLYSGEASGAMN 277 (508)
Q Consensus 262 ~~G~iv~~G~~~~~~~ 277 (508)
+.|+++.+|+|+++.+
T Consensus 224 ~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 224 NYGEVIAEGTPEEVRN 239 (250)
T ss_pred cCCcCcccCCHHHHhc
Confidence 9999999999998753
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=379.70 Aligned_cols=234 Identities=24% Similarity=0.386 Sum_probs=196.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++... ...+++|+|||+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~ 73 (290)
T PRK13634 2 DITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITA 73 (290)
T ss_pred EEEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECcc
Confidence 378999999985210 012469999999999999999999999999999999999999999999999998731
Q ss_pred --------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 010509 118 --------QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTR 186 (508)
Q Consensus 118 --------~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 186 (508)
..++.+|||+|++ .+++ .||+||+.|+.... ..+.++.+++++++++.+||. +..++.+ +
T Consensus 74 ~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~ 144 (290)
T PRK13634 74 GKKNKKLKPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSP-----F 144 (290)
T ss_pred ccccchHHHHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCc-----c
Confidence 3456799999986 4554 69999999875432 234555667889999999997 5566655 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++ |.|||++|||++ .+.++|||+++|++|+
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~G~ 223 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGT 223 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999999764 999999999986 5778999999999999
Q ss_pred EEEEcChhhHH---HHHHhcCCCCCCC
Q 010509 266 PLYSGEASGAM---NYFASIGYCPSVP 289 (508)
Q Consensus 266 iv~~G~~~~~~---~~f~~~g~~~p~~ 289 (508)
+++.|+++++. ..+...+..+|..
T Consensus 224 i~~~g~~~~~~~~~~~~~~~~~~~~~~ 250 (290)
T PRK13634 224 VFLQGTPREIFADPDELEAIGLDLPET 250 (290)
T ss_pred EEEECCHHHHhcCHHHHHHCCCCCCHH
Confidence 99999988764 2344556554443
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=370.62 Aligned_cols=215 Identities=24% Similarity=0.468 Sum_probs=188.7
Q ss_pred EEEEeEEEEEeccccccCccccccc-ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEE-KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~-~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
++++|++++++ + +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 67 (242)
T cd03295 1 IEFENVTKRYG-------------GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIRE 67 (242)
T ss_pred CEEEEEEEEeC-------------CcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCc
Confidence 46789988865 2 569999999999999999999999999999999999999999999999998743
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc--ccccccCCCCCCccCHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE--CKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~~~~~~LSGG 191 (508)
..++.++|++|++.+++.+|++||+.+....+ ..+.++..++++++++.+||.+ ..++.+ ++||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~G 139 (242)
T cd03295 68 QDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYP-----HELSGG 139 (242)
T ss_pred CChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcCh-----hhCCHH
Confidence 34567999999999999999999998865432 2234455667889999999985 566554 489999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+++|++++|++|++++.|
T Consensus 140 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 218 (242)
T cd03295 140 QQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVG 218 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999999999999864 899999999986 567899999999999999999
Q ss_pred ChhhH
Q 010509 271 EASGA 275 (508)
Q Consensus 271 ~~~~~ 275 (508)
++++.
T Consensus 219 ~~~~~ 223 (242)
T cd03295 219 TPDEI 223 (242)
T ss_pred CHHHH
Confidence 88765
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=375.20 Aligned_cols=217 Identities=20% Similarity=0.387 Sum_probs=190.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++|+++.++ ++.+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++..
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~ 73 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPA 73 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccc
Confidence 699999999874 3569999999999999999999999999999999999999999999999998742
Q ss_pred -------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 118 -------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 -------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
..++.++|++|++.+++.+||.||+.+...... ..+.++.+++++++++.+||.+..++.++ .|||
T Consensus 74 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSg 146 (269)
T PRK11831 74 MSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMPS-----ELSG 146 (269)
T ss_pred cChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCH
Confidence 135679999999999999999999987643211 12344455678889999999988777664 8999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+++|++++|++|++++.
T Consensus 147 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~ 225 (269)
T PRK11831 147 GMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVADKKIVAH 225 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999765 899999999986 57788999999999999999
Q ss_pred cChhhH
Q 010509 270 GEASGA 275 (508)
Q Consensus 270 G~~~~~ 275 (508)
|++++.
T Consensus 226 g~~~~~ 231 (269)
T PRK11831 226 GSAQAL 231 (269)
T ss_pred CCHHHH
Confidence 998765
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=366.33 Aligned_cols=214 Identities=28% Similarity=0.482 Sum_probs=185.4
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
|+++|++++++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~ 67 (222)
T cd03224 1 LEVENLNAGYG-------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGL 67 (222)
T ss_pred CEEeeEEeecC-------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCC
Confidence 46789988764 3569999999999999999999999999999999999999999999999998743
Q ss_pred ---h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCCcccccccCCCCCCccCHHH
Q 010509 118 ---Q-MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTEL-GLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 ---~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSGGe 192 (508)
. .++.++|++|++.+++.+|++||+.+...... ..+.+++++++++.+ ++.+..++.+ ++|||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~ 137 (222)
T cd03224 68 PPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLA-----GTLSGGE 137 (222)
T ss_pred CHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCch-----hhCCHHH
Confidence 1 24679999999999999999999988654321 123345667788888 5777666665 4899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
|||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+.+++|++++|++|+++..|++
T Consensus 138 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~ 216 (222)
T cd03224 138 QQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLERGRVVLEGTA 216 (222)
T ss_pred HHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCH
Confidence 99999999999999999999999999999999999999999877899999999986 57789999999999999999987
Q ss_pred hhHH
Q 010509 273 SGAM 276 (508)
Q Consensus 273 ~~~~ 276 (508)
++..
T Consensus 217 ~~~~ 220 (222)
T cd03224 217 AELL 220 (222)
T ss_pred HHHh
Confidence 7653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=365.45 Aligned_cols=209 Identities=31% Similarity=0.520 Sum_probs=180.0
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
|+++|++++++... +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~~---------~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~ 71 (218)
T cd03255 1 IELKNLSKTYGGGG---------EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKL 71 (218)
T ss_pred CeEeeeEEEecCCC---------cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhc
Confidence 46789998875110 01579999999999999999999999999999999999999999999999998742
Q ss_pred ---h----ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 118 ---Q----MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 ---~----~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
. .++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+||.+..++.+ +.|||
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 143 (218)
T cd03255 72 SEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHYP-----SELSG 143 (218)
T ss_pred chhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcCh-----hhcCH
Confidence 1 2457999999999999999999999875433 1233444567889999999988777665 48999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++. +. .||++++|++|++
T Consensus 144 G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~-~~d~v~~l~~G~i 218 (218)
T cd03255 144 GQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-AE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-Hh-hhcEEEEeeCCcC
Confidence 999999999999999999999999999999999999999999987 58999999999874 55 8999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=362.23 Aligned_cols=206 Identities=30% Similarity=0.496 Sum_probs=182.2
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~ 67 (208)
T cd03268 1 LKTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN 67 (208)
T ss_pred CEEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch
Confidence 46789998874 3579999999999999999999999999999999999999999999999998743
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH
Q 010509 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 -~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 196 (508)
..++.++|++|++.+++.+||+||+.+....+ .. .+++++++++.+||.+..++.++ .|||||||||
T Consensus 68 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv 135 (208)
T cd03268 68 IEALRRIGALIEAPGFYPNLTARENLRLLARLL---GI----RKKRIDEVLDVVGLKDSAKKKVK-----GFSLGMKQRL 135 (208)
T ss_pred HHHHhhEEEecCCCccCccCcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHhhhHh-----hCCHHHHHHH
Confidence 34567999999999999999999998865432 11 13467889999999888777664 8999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+++|++++|++|++++.|
T Consensus 136 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 136 GIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999878899999999986 577889999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-46 Score=375.50 Aligned_cols=230 Identities=21% Similarity=0.359 Sum_probs=196.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+++.++.. ..+.+|+|+|++|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~ 73 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTE 73 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCc
Confidence 58999999987511 12459999999999999999999999999999999999999999999999998753
Q ss_pred ----hccccEEEEecCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 ----QMTRNTGFVTQED-VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~-~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
..++.++|++|++ ..++..||+||+.+..... ..++++..++++++++.+||.+..++.+ ++|||||
T Consensus 74 ~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq 145 (279)
T PRK13650 74 ENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSGGQ 145 (279)
T ss_pred CcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHH
Confidence 3456899999997 3677789999998865332 2355566678899999999998877765 4899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
|||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++. + ..+||+++|++|+++..|+
T Consensus 146 ~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~-~-~~~dri~~l~~G~i~~~g~ 223 (279)
T PRK13650 146 KQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE-V-ALSDRVLVMKNGQVESTST 223 (279)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999875 9999999999874 5 4799999999999999999
Q ss_pred hhhHHH---HHHhcCCCCC
Q 010509 272 ASGAMN---YFASIGYCPS 287 (508)
Q Consensus 272 ~~~~~~---~f~~~g~~~p 287 (508)
+++..+ .+...|+..|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13650 224 PRELFSRGNDLLQLGLDIP 242 (279)
T ss_pred HHHHHcChHHHHHcCCCCc
Confidence 987653 2444555533
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=362.53 Aligned_cols=206 Identities=31% Similarity=0.520 Sum_probs=181.3
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~ 69 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRL 69 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccC
Confidence 78899999873 13569999999999999999999999999999999999999999999999998742
Q ss_pred ------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 118 ------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 118 ------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
..++.++|++|++.+++.+|+.||+.+....+ ....++.+++++++++.+||.+..++.+ +.||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (214)
T TIGR02673 70 RGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFP-----EQLSGG 141 (214)
T ss_pred CHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHH
Confidence 24567999999999999999999999875432 1234445567889999999988777665 489999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+..+||++++|++|+
T Consensus 142 ~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 142 EQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999999999999877999999999986 5778899999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-46 Score=383.04 Aligned_cols=233 Identities=24% Similarity=0.415 Sum_probs=195.0
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
+.|+++||+++++.........+..+...+++||||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 46999999999863211000000011357999999999999999999999999999999999999999999999999874
Q ss_pred h-------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 010509 117 N-------QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTR 186 (508)
Q Consensus 117 ~-------~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 186 (508)
. ..++.++||+|++ .++|.+||.|++.+......+ ..++++.+++++++++.+||. +..++. ++
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p~ 160 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRY-----PH 160 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCC-----cc
Confidence 2 2456899999997 588999999999886543211 235666777889999999995 445554 45
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
+|||||||||+||+||+.+|++|++||||+|||+.++.++++.|+++.++ |.|+|++|||++ .+.+++||+++|++|+
T Consensus 161 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~G~ 239 (331)
T PRK15079 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYLGH 239 (331)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999864 999999999986 5778999999999999
Q ss_pred EEEEcChhhHH
Q 010509 266 PLYSGEASGAM 276 (508)
Q Consensus 266 iv~~G~~~~~~ 276 (508)
+++.|+++++.
T Consensus 240 ive~g~~~~i~ 250 (331)
T PRK15079 240 AVELGTYDEVY 250 (331)
T ss_pred EEEEcCHHHHH
Confidence 99999988764
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-46 Score=365.37 Aligned_cols=216 Identities=28% Similarity=0.474 Sum_probs=188.7
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~ 68 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRA 68 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccC
Confidence 67899998874 3569999999999999999999999999999999999999999999999998743
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.++|++|++.+++.+|++||+.+....+ ....++..++++++++.+||.+..++.++ .||||||||
T Consensus 69 ~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qr 140 (236)
T TIGR03864 69 PRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKVR-----ELNGGHRRR 140 (236)
T ss_pred ChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHH
Confidence 23357999999999888999999998765432 22344455678899999999887777664 899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||++||+++. +. .+|++++|++|+++..|++++
T Consensus 141 l~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~i~~l~~G~i~~~~~~~~ 218 (236)
T TIGR03864 141 VEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-IE-ADDRLVVLHRGRVLADGAAAE 218 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-Hh-hCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999999999999999999999985 58999999999974 54 499999999999999998876
Q ss_pred HHH
Q 010509 275 AMN 277 (508)
Q Consensus 275 ~~~ 277 (508)
..+
T Consensus 219 ~~~ 221 (236)
T TIGR03864 219 LRG 221 (236)
T ss_pred HHH
Confidence 643
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=369.99 Aligned_cols=219 Identities=26% Similarity=0.423 Sum_probs=186.8
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++. ++++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~------------~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~ 69 (243)
T TIGR02315 2 LEVENLSKVYPN------------GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKL 69 (243)
T ss_pred eEEEeeeeecCC------------CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhC
Confidence 678999887630 2569999999999999999999999999999999999999999999999998642
Q ss_pred ------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcC--C---CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 010509 118 ------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQL--P---NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTR 186 (508)
Q Consensus 118 ------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~--~---~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 186 (508)
..++.++|++|++.+++.+||+||+.+...... . ......+.+++++++++.+||.+..++.+ +
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 144 (243)
T TIGR02315 70 RGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA-----D 144 (243)
T ss_pred CHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc-----c
Confidence 235679999999999999999999976431100 0 00112334567889999999987777665 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.++||++++|++|+
T Consensus 145 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~G~ 223 (243)
T TIGR02315 145 QLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKAGE 223 (243)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCE
Confidence 89999999999999999999999999999999999999999999999764 899999999986 5678899999999999
Q ss_pred EEEEcChhhH
Q 010509 266 PLYSGEASGA 275 (508)
Q Consensus 266 iv~~G~~~~~ 275 (508)
+++.|++++.
T Consensus 224 i~~~~~~~~~ 233 (243)
T TIGR02315 224 IVFDGAPSEL 233 (243)
T ss_pred EEecCCHHHh
Confidence 9999988764
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=375.65 Aligned_cols=207 Identities=23% Similarity=0.401 Sum_probs=182.6
Q ss_pred cccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh----h----ccccEEEEecCCCC
Q 010509 61 IEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----Q----MTRNTGFVTQEDVL 132 (508)
Q Consensus 61 ~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~----~----~~~~i~yv~Q~~~l 132 (508)
++.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. . .++.++|++|++.+
T Consensus 34 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 113 (269)
T cd03294 34 TGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFAL 113 (269)
T ss_pred cCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCccc
Confidence 346789999999999999999999999999999999999999999999999998742 1 13579999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 010509 133 SPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLD 212 (508)
Q Consensus 133 ~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLD 212 (508)
++.+||+||+.+..... .....+..++++++++.+||.+..++.++ +||||||||++||+||+.+|++|+||
T Consensus 114 ~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~lAral~~~p~illLD 185 (269)
T cd03294 114 LPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPD-----ELSGGMQQRVGLARALAVDPDILLMD 185 (269)
T ss_pred CCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999998865432 12334455678899999999988887764 89999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHH
Q 010509 213 EPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 213 EPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~ 276 (508)
|||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+++|++++|++|++++.|++++..
T Consensus 186 EPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 186 EAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999764 899999999986 577899999999999999999987664
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-46 Score=363.53 Aligned_cols=216 Identities=28% Similarity=0.434 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+++.++.. ...+.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~ 75 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSK 75 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCc
Confidence 58999999987521 012469999999999999999999999999999999999999999999999998743
Q ss_pred ----h---c-cccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccC
Q 010509 118 ----Q---M-TRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVS 189 (508)
Q Consensus 118 ----~---~-~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 189 (508)
. . ++.++|++|++.+++.+|++||+.+..... ....++.+++++++++.+||.+..++.+ ++||
T Consensus 76 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS 147 (233)
T PRK11629 76 LSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRP-----SELS 147 (233)
T ss_pred CCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 1 2 257999999999999999999998865432 1234455567899999999988777665 4899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEE
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLY 268 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~ 268 (508)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++. +.. +|++++|++|+++.
T Consensus 148 gG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~~~-~~~~~~l~~G~i~~ 225 (233)
T PRK11629 148 GGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-AKR-MSRQLEMRDGRLTA 225 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHh-hCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999975 58999999999874 545 58999999999998
Q ss_pred EcCh
Q 010509 269 SGEA 272 (508)
Q Consensus 269 ~G~~ 272 (508)
.|+.
T Consensus 226 ~~~~ 229 (233)
T PRK11629 226 ELSL 229 (233)
T ss_pred Eecc
Confidence 8764
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-46 Score=379.02 Aligned_cols=234 Identities=22% Similarity=0.368 Sum_probs=196.0
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..|+++|+++.|+... ...+++|+|+|+++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 20 ~~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~ 91 (320)
T PRK13631 20 IILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIG 91 (320)
T ss_pred ceEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcc
Confidence 4699999999985210 01246999999999999999999999999999999999999999999999998763
Q ss_pred h--------------------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-
Q 010509 117 N--------------------QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS- 173 (508)
Q Consensus 117 ~--------------------~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~- 173 (508)
. ..++.++||+|++ .+++ .||+||+.++.... ..+.++..++++++++.+||.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~ 167 (320)
T PRK13631 92 DKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDD 167 (320)
T ss_pred cccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCCh
Confidence 2 3467899999986 4666 49999998865321 234555667889999999996
Q ss_pred cccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHh
Q 010509 174 ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYY 253 (508)
Q Consensus 174 ~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~ 253 (508)
+..++.+ .+||||||||++|||+|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ .+..
T Consensus 168 ~~~~~~~-----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~ 241 (320)
T PRK13631 168 SYLERSP-----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLE 241 (320)
T ss_pred hHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHH
Confidence 5566554 589999999999999999999999999999999999999999999999877999999999986 4668
Q ss_pred hccEEEEEeCCeEEEEcChhhHH---HHHHhcCCCCCC
Q 010509 254 MFHKVLLLSEGYPLYSGEASGAM---NYFASIGYCPSV 288 (508)
Q Consensus 254 ~~D~v~lL~~G~iv~~G~~~~~~---~~f~~~g~~~p~ 288 (508)
.|||+++|++|+++..|++++.. +.+...|...|.
T Consensus 242 ~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 242 VADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred hCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 89999999999999999998764 234455655444
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-46 Score=377.81 Aligned_cols=232 Identities=25% Similarity=0.397 Sum_probs=194.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC-
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS- 116 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~- 116 (508)
.|+++|+++.++... .....+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|++..
T Consensus 2 ~i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~ 73 (305)
T PRK13651 2 QIKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKN 73 (305)
T ss_pred EEEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccc
Confidence 488999999985210 01246999999999999999999999999999999999999999999999987541
Q ss_pred ---------------------------hhccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 010509 117 ---------------------------NQMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVM 167 (508)
Q Consensus 117 ---------------------------~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l 167 (508)
...++.+|||+|++ .++ ..||+|++.|+.... ..++++..+++++++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 74 KKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred ccccccccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 13456899999985 344 479999999875432 345566677899999
Q ss_pred HHcCCC-cccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecC
Q 010509 168 TELGLS-ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQ 246 (508)
Q Consensus 168 ~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~ 246 (508)
+.+||. +..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++|||
T Consensus 150 ~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 6667655 4999999999999999999999999999999999999999999999998779999999999
Q ss_pred cchHHHhhccEEEEEeCCeEEEEcChhhHHH---HHHhcCCCCC
Q 010509 247 PSNMLYYMFHKVLLLSEGYPLYSGEASGAMN---YFASIGYCPS 287 (508)
Q Consensus 247 ~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~---~f~~~g~~~p 287 (508)
++ .+.+++||+++|++|++++.|++++... .....|...|
T Consensus 225 ~~-~~~~~adrv~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 267 (305)
T PRK13651 225 LD-NVLEWTKRTIFFKDGKIIKDGDTYDILSDNKFLIENNMEPP 267 (305)
T ss_pred HH-HHHHhCCEEEEEECCEEEEECCHHHHhcCHHHHHHCCCCCC
Confidence 86 5778999999999999999999988643 2334455444
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=360.61 Aligned_cols=207 Identities=31% Similarity=0.471 Sum_probs=181.3
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~ 68 (214)
T cd03292 1 IEFINVTKTYPN------------GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDL 68 (214)
T ss_pred CEEEEEEEEeCC------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccC
Confidence 467899988741 2469999999999999999999999999999999999999999999999998742
Q ss_pred ------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 118 ------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 118 ------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
..++.++|++|++.+++.+|++||+.+....+ ..+.++..++++++++.+||.+..++.++ +||||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 140 (214)
T cd03292 69 RGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRALPA-----ELSGG 140 (214)
T ss_pred CHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChh-----hcCHH
Confidence 24567999999999999999999998875432 12344455678899999999887776654 89999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+++|++++|++|++
T Consensus 141 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 141 EQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999999999877999999999986 57778999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-46 Score=374.17 Aligned_cols=232 Identities=28% Similarity=0.460 Sum_probs=197.2
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
+..|+++|+++.++. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++
T Consensus 3 ~~~l~~~~l~~~~~~------------~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~ 70 (283)
T PRK13636 3 DYILKVEELNYNYSD------------GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPI 70 (283)
T ss_pred CceEEEEeEEEEeCC------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEEC
Confidence 346999999998741 35699999999999999999999999999999999999999999999999987
Q ss_pred C------hhccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCcc
Q 010509 116 S------NQMTRNTGFVTQEDV-LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGV 188 (508)
Q Consensus 116 ~------~~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 188 (508)
. ...++.++|++|++. .+...||+||+.+..... ..+.++..++++++++.+||.+..++.+ +.|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPT-----HCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCc-----ccC
Confidence 3 134578999999973 234579999998864322 2345555677899999999998877765 489
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 189 SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 189 SGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+..+|||+++|++|+++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~G~i~ 221 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKEGRVI 221 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999875 899999999987 466789999999999999
Q ss_pred EEcChhhHHH---HHHhcCCCCCC
Q 010509 268 YSGEASGAMN---YFASIGYCPSV 288 (508)
Q Consensus 268 ~~G~~~~~~~---~f~~~g~~~p~ 288 (508)
+.|++++... .+...+..+|.
T Consensus 222 ~~g~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T PRK13636 222 LQGNPKEVFAEKEMLRKVNLRLPR 245 (283)
T ss_pred EeCCHHHHhcCHHHHHHcCCCCCc
Confidence 9999987654 33445655544
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-46 Score=366.62 Aligned_cols=215 Identities=25% Similarity=0.427 Sum_probs=187.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCc-----ccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI-----NGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~-----~G~I~~~G 112 (508)
+++++|++++++ ++.+++|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|
T Consensus 1 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g 67 (247)
T TIGR00972 1 AIEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDG 67 (247)
T ss_pred CEEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECC
Confidence 378899999875 346999999999999999999999999999999999999887 99999999
Q ss_pred EeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----cccccccCC
Q 010509 113 KPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS----ECKNSLIGG 182 (508)
Q Consensus 113 ~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~ 182 (508)
+++.. ..++.++|++|++.+++ +|++||+.+....+. ..+.++..++++++++.+||. +..++.+
T Consensus 68 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 142 (247)
T TIGR00972 68 QDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDSA-- 142 (247)
T ss_pred EEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCc--
Confidence 98742 23568999999999988 999999988654321 123445556789999999997 5555554
Q ss_pred CCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 183 PLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 183 ~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ +|||++||+++ .+.+++|++++|+
T Consensus 143 ---~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~~-~~~~~~d~i~~l~ 217 (247)
T TIGR00972 143 ---LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNMQ-QAARISDRTAFFY 217 (247)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CeEEEEecCHH-HHHHhCCEEEEEE
Confidence 589999999999999999999999999999999999999999999999774 89999999986 5778999999999
Q ss_pred CCeEEEEcChhhH
Q 010509 263 EGYPLYSGEASGA 275 (508)
Q Consensus 263 ~G~iv~~G~~~~~ 275 (508)
+|+++..|++++.
T Consensus 218 ~G~i~~~~~~~~~ 230 (247)
T TIGR00972 218 DGELVEYGPTEQI 230 (247)
T ss_pred CCEEEEeCCHHHH
Confidence 9999999998765
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-46 Score=366.66 Aligned_cols=218 Identities=25% Similarity=0.454 Sum_probs=191.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 69 (241)
T PRK10895 3 TLTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISL 69 (241)
T ss_pred eEEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC
Confidence 588999999874 3579999999999999999999999999999999999999999999999998742
Q ss_pred -----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 -----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 -----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
..++.++|++|++.+++.+||.||+.+..... ...+.++.+++++++++.+|+.+..++.+ +.|||||
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 142 (241)
T PRK10895 70 LPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIR--DDLSAEQREDRANELMEEFHIEHLRDSMG-----QSLSGGE 142 (241)
T ss_pred CCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcc--cccCHHHHHHHHHHHHHHcCCHHHhhcch-----hhCCHHH
Confidence 23567999999999999999999998764322 11233445567889999999987776655 4899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.+|++++|++|++++.|++
T Consensus 143 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~ 221 (241)
T PRK10895 143 RRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQGHLIAHGTP 221 (241)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeCCeEEeeCCH
Confidence 99999999999999999999999999999999999999999877999999999986 57789999999999999999998
Q ss_pred hhHH
Q 010509 273 SGAM 276 (508)
Q Consensus 273 ~~~~ 276 (508)
++..
T Consensus 222 ~~~~ 225 (241)
T PRK10895 222 TEIL 225 (241)
T ss_pred HHHh
Confidence 7653
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-46 Score=368.12 Aligned_cols=218 Identities=26% Similarity=0.422 Sum_probs=190.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~ 71 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINL 71 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccc
Confidence 589999999875 3579999999999999999999999999999999999999999999999987631
Q ss_pred -----------------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-ccc
Q 010509 118 -----------------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK-NSL 179 (508)
Q Consensus 118 -----------------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~ 179 (508)
..++.++|++|++.+++.+|++||+.++..... .....+.++++.++++.+|+.+.. ++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 149 (257)
T PRK10619 72 VRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGKY 149 (257)
T ss_pred ccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhCC
Confidence 235679999999999999999999987542111 123445567788999999998753 544
Q ss_pred cCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEE
Q 010509 180 IGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVL 259 (508)
Q Consensus 180 vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~ 259 (508)
+ ++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+..+|||++
T Consensus 150 ~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~ 223 (257)
T PRK10619 150 P-----VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVI 223 (257)
T ss_pred c-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEE
Confidence 4 589999999999999999999999999999999999999999999999877999999999986 5778899999
Q ss_pred EEeCCeEEEEcChhhHH
Q 010509 260 LLSEGYPLYSGEASGAM 276 (508)
Q Consensus 260 lL~~G~iv~~G~~~~~~ 276 (508)
+|++|++++.|++++..
T Consensus 224 ~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 224 FLHQGKIEEEGAPEQLF 240 (257)
T ss_pred EEECCEEEEeCCHHHhh
Confidence 99999999999987653
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-46 Score=359.96 Aligned_cols=208 Identities=30% Similarity=0.527 Sum_probs=182.7
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ ++.+|+|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 1 i~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~ 66 (211)
T cd03264 1 LQLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQ 66 (211)
T ss_pred CEEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccc
Confidence 46789998864 346999999999999 999999999999999999999999999999999987643
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.++|++|++.+++.+||.||+.+....+ ..++++..++++++++.+||.+..++.++ +||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 138 (211)
T cd03264 67 PQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKIG-----SLSGGMRRR 138 (211)
T ss_pred hHHHHhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCchh-----hCCHHHHHH
Confidence 34678999999999999999999998865443 12334445678899999999887777664 899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+++||+++|++|+++..|
T Consensus 139 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 139 VGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999986 599999999986 577889999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-46 Score=365.02 Aligned_cols=216 Identities=30% Similarity=0.455 Sum_probs=188.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC-
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS- 116 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~- 116 (508)
+++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 68 (242)
T PRK11124 2 SIQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDF 68 (242)
T ss_pred EEEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccc
Confidence 588999999875 356999999999999999999999999999999999999999999999999762
Q ss_pred ---------hhccccEEEEecCCCCCCCCCHHHHHHHHH-HhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 010509 117 ---------NQMTRNTGFVTQEDVLSPYLTVTETMVFTA-LLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTR 186 (508)
Q Consensus 117 ---------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 186 (508)
...++.++|++|++.+++.+|+.||+.+.. ... ....++..++++++++.+|+.+..++.+ +
T Consensus 69 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 140 (242)
T PRK11124 69 SKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP-----L 140 (242)
T ss_pred ccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----h
Confidence 123567999999999999999999997532 221 1233444567889999999988777665 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++. .+.+++|++++|++|++
T Consensus 141 ~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~i 219 (242)
T PRK11124 141 HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMENGHI 219 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEE
Confidence 89999999999999999999999999999999999999999999999877999999999986 56688999999999999
Q ss_pred EEEcChhhH
Q 010509 267 LYSGEASGA 275 (508)
Q Consensus 267 v~~G~~~~~ 275 (508)
++.|++++.
T Consensus 220 ~~~~~~~~~ 228 (242)
T PRK11124 220 VEQGDASCF 228 (242)
T ss_pred EEeCCHHHh
Confidence 999987753
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-46 Score=365.17 Aligned_cols=215 Identities=25% Similarity=0.415 Sum_probs=187.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|++++++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~ 71 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITD 71 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCC
Confidence 689999999874 3579999999999999999999999999999999999999999999999998743
Q ss_pred -----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCCcccccccCCCCCCccCHH
Q 010509 118 -----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTEL-GLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 118 -----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSGG 191 (508)
..++.++|++|++.+++.+||.||+.+..... ..++..++++++++.+ ++.+..++.+ +.||||
T Consensus 72 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G 141 (237)
T PRK11614 72 WQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQRA-----GTMSGG 141 (237)
T ss_pred CCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCch-----hhCCHH
Confidence 23567999999999999999999998754221 1223344567788888 5776666554 489999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+||+++|++|++++.|+
T Consensus 142 ~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~ 220 (237)
T PRK11614 142 EQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLENGHVVLEDT 220 (237)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeCCEEEeeCC
Confidence 999999999999999999999999999999999999999999877999999999986 5778999999999999999999
Q ss_pred hhhHH
Q 010509 272 ASGAM 276 (508)
Q Consensus 272 ~~~~~ 276 (508)
++++.
T Consensus 221 ~~~~~ 225 (237)
T PRK11614 221 GDALL 225 (237)
T ss_pred HHHHh
Confidence 88764
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=344.73 Aligned_cols=214 Identities=28% Similarity=0.450 Sum_probs=188.2
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
+.+.+++++|+. .==..++.|++||++||+||||||||||||+|+|...|.+|+|++||++.+.
T Consensus 2 l~L~~V~~~y~~---------------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~ 66 (231)
T COG3840 2 LALDDVRFSYGH---------------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTAS 66 (231)
T ss_pred ccccceEEeeCc---------------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcC
Confidence 556788887752 1236789999999999999999999999999999999999999999999754
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH
Q 010509 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 -~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 196 (508)
-..|-+++++|+.++|..|||.+|+.++..-.+ .. ..+.+++++.++..+||..+.+++.+ +|||||||||
T Consensus 67 ~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL-~a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQRv 138 (231)
T COG3840 67 PPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL--KL-NAEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQRV 138 (231)
T ss_pred CcccCChhhhhhccccchhhhhhhhhcccCCccc--cc-CHHHHHHHHHHHHHhChhhHhhhCcc-----ccCchHHHHH
Confidence 356779999999999999999999988753221 22 24556789999999999999988876 9999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
++||+|+.+-+|++||||+|.|||.-+.+++.++.++++ ++.|++++||+|+ ++.+++|+++++++|||.+.|+.++.
T Consensus 139 ALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~ 217 (231)
T COG3840 139 ALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQEL 217 (231)
T ss_pred HHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHH
Confidence 999999999999999999999999999999999999985 5999999999997 57799999999999999999988765
Q ss_pred H
Q 010509 276 M 276 (508)
Q Consensus 276 ~ 276 (508)
.
T Consensus 218 ~ 218 (231)
T COG3840 218 L 218 (231)
T ss_pred h
Confidence 3
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=356.14 Aligned_cols=217 Identities=28% Similarity=0.469 Sum_probs=191.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++||+..|. ..++|++||+++++||+++|+||||||||||||+|+|+.++.+|+|.++|++++.
T Consensus 3 mL~v~~l~~~YG-------------~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~ 69 (237)
T COG0410 3 MLEVENLSAGYG-------------KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITG 69 (237)
T ss_pred ceeEEeEeeccc-------------ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCC
Confidence 689999998765 5789999999999999999999999999999999999999999999999999864
Q ss_pred -----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CCcccccccCCCCCCccCHH
Q 010509 118 -----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELG-LSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 118 -----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSGG 191 (508)
..++.++||||...+||.|||+|||..++..+.. ++......+++.+.|- |.+.++++-| .||||
T Consensus 70 ~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSGG 140 (237)
T COG0410 70 LPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSGG 140 (237)
T ss_pred CCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCChH
Confidence 3567899999999999999999999987654321 1122222778888885 7777888877 89999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
|||.++|||||+.+|++|+|||||.||-|.-..+|.+.+++++++ |.||+++.++.. .+.+++||.++|.+|+++++|
T Consensus 141 EQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~Griv~~G 219 (237)
T COG0410 141 EQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLENGRIVLSG 219 (237)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeCCEEEEec
Confidence 999999999999999999999999999999999999999999965 889999998875 677999999999999999999
Q ss_pred ChhhHHH
Q 010509 271 EASGAMN 277 (508)
Q Consensus 271 ~~~~~~~ 277 (508)
+++++.+
T Consensus 220 ~~~eL~~ 226 (237)
T COG0410 220 TAAELLA 226 (237)
T ss_pred CHHHHhc
Confidence 9987653
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-46 Score=374.32 Aligned_cols=222 Identities=23% Similarity=0.399 Sum_probs=190.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+++.++... ...+.+|+|||++|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~ 73 (286)
T PRK13646 2 TIRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITH 73 (286)
T ss_pred EEEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECcc
Confidence 488999999985210 012469999999999999999999999999999999999999999999999998732
Q ss_pred --------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 010509 118 --------QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTR 186 (508)
Q Consensus 118 --------~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 186 (508)
..++.+|||+|++ .+++ .||.||+.+..... ..+.++..++++++++.+||. +..++.+ +
T Consensus 74 ~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~ 144 (286)
T PRK13646 74 KTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSP-----F 144 (286)
T ss_pred ccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCc-----c
Confidence 3467899999986 4665 59999999865332 234556667889999999996 5666654 5
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.+++||+++|++|+
T Consensus 145 ~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~ 223 (286)
T PRK13646 145 QMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGS 223 (286)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCE
Confidence 8999999999999999999999999999999999999999999999976 4999999999986 5778899999999999
Q ss_pred EEEEcChhhHHH
Q 010509 266 PLYSGEASGAMN 277 (508)
Q Consensus 266 iv~~G~~~~~~~ 277 (508)
+++.|++++..+
T Consensus 224 i~~~g~~~~~~~ 235 (286)
T PRK13646 224 IVSQTSPKELFK 235 (286)
T ss_pred EEEECCHHHHHh
Confidence 999999887653
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-46 Score=360.51 Aligned_cols=208 Identities=26% Similarity=0.447 Sum_probs=182.7
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~ 69 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRL 69 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC
Confidence 78899999873 13579999999999999999999999999999999999999999999999998742
Q ss_pred ------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 118 ------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 118 ------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
..++.++|++|++.+++.+|++||+.+....+ ..+.++..++++++++.+|+.+..++.+ +.||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (222)
T PRK10908 70 KNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFP-----IQLSGG 141 (222)
T ss_pred ChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----hhCCHH
Confidence 13568999999999888999999998865432 2234445567889999999988777665 489999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||+++ .+...+|++++|++|+++
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 142 EQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEc
Confidence 999999999999999999999999999999999999999999877899999999986 577889999999999975
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-46 Score=361.37 Aligned_cols=218 Identities=42% Similarity=0.703 Sum_probs=186.8
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC---CcccEEEECCEeC
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG---RINGRITYNGKPF 115 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~---~~~G~I~~~G~~~ 115 (508)
+.++|+++.+...+ ..+++|+|+|+++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++
T Consensus 4 ~~~~~~~~~~~~~~---------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNWN---------KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecCc---------cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 67899999875211 13679999999999999999999999999999999999998 8999999999987
Q ss_pred Ch-hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 116 SN-QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEA-VMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 116 ~~-~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
.. ..++.++|++|++.+++.+||+||+.+......+.........+++++ .++.+++.+..++.+ +.||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV-----KGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc-----cCcCHHHH
Confidence 54 456789999999999999999999998765432222222233344555 899999988777665 48999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++...+.+++|++++|++|++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999999998779999999999855688999999999999998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-46 Score=374.00 Aligned_cols=221 Identities=25% Similarity=0.368 Sum_probs=189.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+++.++... ...+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 2 ~i~~~~l~~~~~~~~--------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 73 (287)
T PRK13641 2 SIKFENVDYIYSPGT--------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITP 73 (287)
T ss_pred EEEEEEEEEEcCCCC--------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECcc
Confidence 578999999875110 002469999999999999999999999999999999999999999999999998632
Q ss_pred --------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 010509 118 --------QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTR 186 (508)
Q Consensus 118 --------~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 186 (508)
..++.++|++|++ .++ .+||.||+.+..... ....++..++++++++.+||. +..++.++
T Consensus 74 ~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~----- 144 (287)
T PRK13641 74 ETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSPF----- 144 (287)
T ss_pred ccccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCcc-----
Confidence 2356799999996 355 579999998765432 234555667889999999997 56776664
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.||++++|++|++
T Consensus 145 ~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~G~i 223 (287)
T PRK13641 145 ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEHGKL 223 (287)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 89999999999999999999999999999999999999999999999877999999999986 57789999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
+..|++++..
T Consensus 224 ~~~g~~~~~~ 233 (287)
T PRK13641 224 IKHASPKEIF 233 (287)
T ss_pred EEeCCHHHHh
Confidence 9999988764
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=366.99 Aligned_cols=220 Identities=23% Similarity=0.399 Sum_probs=189.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~ 71 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEG 71 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCC
Confidence 699999999874 3579999999999999999999999999999999999999999999999998743
Q ss_pred ----h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcC-----------CC-CCCHHHHHHHHHHHHHHcCCCccccccc
Q 010509 118 ----Q-MTRNTGFVTQEDVLSPYLTVTETMVFTALLQL-----------PN-SFTEKEKIKCAEAVMTELGLSECKNSLI 180 (508)
Q Consensus 118 ----~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~-----------~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~v 180 (508)
. .+..++|++|++.+++.+||+||+.+...... +. .....+..++++++++.+||.+..++.+
T Consensus 72 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 151 (255)
T PRK11300 72 LPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQA 151 (255)
T ss_pred CCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCCh
Confidence 1 23468999999999999999999998643110 00 0011233456788999999988777766
Q ss_pred CCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEE
Q 010509 181 GGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVL 259 (508)
Q Consensus 181 g~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~ 259 (508)
+ +||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.++||+++
T Consensus 152 ~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~ 225 (255)
T PRK11300 152 G-----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIY 225 (255)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 4 89999999999999999999999999999999999999999999999875 899999999986 5778899999
Q ss_pred EEeCCeEEEEcChhhHH
Q 010509 260 LLSEGYPLYSGEASGAM 276 (508)
Q Consensus 260 lL~~G~iv~~G~~~~~~ 276 (508)
+|++|++++.|++++..
T Consensus 226 ~l~~g~i~~~~~~~~~~ 242 (255)
T PRK11300 226 VVNQGTPLANGTPEEIR 242 (255)
T ss_pred EEECCeEEecCCHHHHh
Confidence 99999999999987653
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-46 Score=358.84 Aligned_cols=201 Identities=30% Similarity=0.460 Sum_probs=174.6
Q ss_pred EEeEEEEEeccccccCccccccc-ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-h
Q 010509 41 FEDIVYKIKMKKGFYGSNKKIEE-KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN-Q 118 (508)
Q Consensus 41 ~~~l~~~~~~~~~~~~~~~~~~~-~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~-~ 118 (508)
++|++++++ + +.+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. .
T Consensus 2 ~~~l~~~~~-------------~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 68 (205)
T cd03226 2 IENISFSYK-------------KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKE 68 (205)
T ss_pred cccEEEEeC-------------CcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHH
Confidence 578887764 2 569999999999999999999999999999999999999999999999998743 3
Q ss_pred ccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHH
Q 010509 119 MTRNTGFVTQEDV-LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVS 197 (508)
Q Consensus 119 ~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 197 (508)
.++.++|++|++. .+..+|++||+.+..... . . ..++++++++.+||.+..++.++ +||||||||++
T Consensus 69 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~ 136 (205)
T cd03226 69 RRKSIGYVMQDVDYQLFTDSVREELLLGLKEL---D--A--GNEQAETVLKDLDLYALKERHPL-----SLSGGQKQRLA 136 (205)
T ss_pred hhcceEEEecChhhhhhhccHHHHHhhhhhhc---C--c--cHHHHHHHHHHcCCchhcCCCch-----hCCHHHHHHHH
Confidence 4567999999974 334579999998764321 1 1 12467899999999988777664 89999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 198 IGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 198 Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+++|++++|++|+++
T Consensus 137 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 137 IAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999999999999999877999999999986 577889999999999875
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=370.30 Aligned_cols=217 Identities=24% Similarity=0.460 Sum_probs=187.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++|++++++ ++.+|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 1 ml~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~ 67 (271)
T PRK13638 1 MLATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDY 67 (271)
T ss_pred CeEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEccc
Confidence 378999999874 3569999999999999999999999999999999999999999999999998731
Q ss_pred ------hccccEEEEecCCCC-CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 118 ------QMTRNTGFVTQEDVL-SPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 ------~~~~~i~yv~Q~~~l-~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
..++.++|++|++.. +...|+.||+.+..... ....++..++++++++.+||.+..++.+ +.|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 139 (271)
T PRK13638 68 SKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI-----QCLSH 139 (271)
T ss_pred ccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhCCH
Confidence 235679999999753 34468999998764332 2234455567889999999988777665 48999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
|||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+..++|++++|++|++++.|
T Consensus 140 G~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g 218 (271)
T PRK13638 140 GQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQGQILTHG 218 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999999877999999999986 577889999999999999999
Q ss_pred ChhhHH
Q 010509 271 EASGAM 276 (508)
Q Consensus 271 ~~~~~~ 276 (508)
++++..
T Consensus 219 ~~~~~~ 224 (271)
T PRK13638 219 APGEVF 224 (271)
T ss_pred CHHHHh
Confidence 988764
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=366.92 Aligned_cols=213 Identities=31% Similarity=0.532 Sum_probs=186.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|++++++ ++.+|+|+|+++++||+++|+|||||||||||++|+|+++|++|+|.++|+++..
T Consensus 1 ml~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 67 (255)
T PRK11248 1 MLQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG 67 (255)
T ss_pred CEEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC
Confidence 378899998874 3569999999999999999999999999999999999999999999999998753
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVS 197 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 197 (508)
.++.++|++|++.+++.+||.||+.+....+ .....+..++++++++.+||.+..++.+ .+||||||||++
T Consensus 68 -~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrl~ 138 (255)
T PRK11248 68 -PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQRVG 138 (255)
T ss_pred -CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHH
Confidence 3346899999999999999999998765432 2234455567899999999988777665 489999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEe--CCeEEEEcChh
Q 010509 198 IGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLS--EGYPLYSGEAS 273 (508)
Q Consensus 198 Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~--~G~iv~~G~~~ 273 (508)
||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++ .+..+||++++|+ +|+++..++.+
T Consensus 139 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 139 IARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999999999999999864 5899999999986 5778999999998 59999988754
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=370.81 Aligned_cols=229 Identities=25% Similarity=0.369 Sum_probs=196.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~ 73 (279)
T PRK13635 5 IIRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSE 73 (279)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCc
Confidence 5899999998741 12469999999999999999999999999999999999999999999999998753
Q ss_pred ----hccccEEEEecCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 ----QMTRNTGFVTQED-VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~-~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
..++.++|++|++ .+++..||.||+.+..... ..+.++..++++++++.+||.+..++.++ .|||||
T Consensus 74 ~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~G~ 145 (279)
T PRK13635 74 ETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREPH-----RLSGGQ 145 (279)
T ss_pred CcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCcc-----cCCHHH
Confidence 3456799999997 3667789999998865432 23455556788999999999988877764 899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
|||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++. +. .+|++++|++|++++.|+
T Consensus 146 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~~-~~d~i~~l~~G~i~~~g~ 223 (279)
T PRK13635 146 KQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-AA-QADRVIVMNKGEILEEGT 223 (279)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-HH-cCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999875 8999999999874 54 599999999999999999
Q ss_pred hhhHHH---HHHhcCCCCC
Q 010509 272 ASGAMN---YFASIGYCPS 287 (508)
Q Consensus 272 ~~~~~~---~f~~~g~~~p 287 (508)
+++... .+...+..+|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13635 224 PEEIFKSGHMLQEIGLDVP 242 (279)
T ss_pred HHHHhcCHHHHHHcCCCCC
Confidence 887653 3444555543
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=363.40 Aligned_cols=218 Identities=24% Similarity=0.395 Sum_probs=188.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+++.++ ++++|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.++|+++..
T Consensus 2 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~ 68 (242)
T TIGR03411 2 ILYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTG 68 (242)
T ss_pred eEEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCC
Confidence 478999998874 3569999999999999999999999999999999999999999999999998742
Q ss_pred -----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC--C---CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCc
Q 010509 118 -----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP--N---SFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRG 187 (508)
Q Consensus 118 -----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 187 (508)
..++.++|++|++.+++.+||+||+.+....... . ....++.+++++++++.+|+.+..++.++ .
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 143 (242)
T TIGR03411 69 LPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAG-----L 143 (242)
T ss_pred CCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChh-----h
Confidence 1245699999999999999999999886432100 0 01223445678999999999887776664 8
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.++||++++|++|+++
T Consensus 144 LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~~~ 221 (242)
T TIGR03411 144 LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQGSVL 221 (242)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEECCeEE
Confidence 999999999999999999999999999999999999999999999976 689999999986 577899999999999999
Q ss_pred EEcChhhH
Q 010509 268 YSGEASGA 275 (508)
Q Consensus 268 ~~G~~~~~ 275 (508)
..|++++.
T Consensus 222 ~~~~~~~~ 229 (242)
T TIGR03411 222 AEGSLDQV 229 (242)
T ss_pred eeCCHHHH
Confidence 99988765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=367.93 Aligned_cols=217 Identities=27% Similarity=0.490 Sum_probs=189.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~ 68 (258)
T PRK13548 2 MLEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLAD 68 (258)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEccc
Confidence 488999999875 3569999999999999999999999999999999999999999999999998643
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
..++.++|++|++.+++.+||+||+.+..... ....++..++++++++.+||.+..++.++ +||||||
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGe~ 140 (258)
T PRK13548 69 WSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDYP-----QLSGGEQ 140 (258)
T ss_pred CCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCcc-----cCCHHHH
Confidence 34567999999998888899999998864321 11223344568899999999887777664 8999999
Q ss_pred HHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 194 KRVSIGQEIL------INPSLLFLDEPTSGLDSTIAQQILSILLKLA-NGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 194 qRv~Ia~aL~------~~P~illLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
||++||++|+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||++. .+..++|++++|++|++
T Consensus 141 qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i 219 (258)
T PRK13548 141 QRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRL 219 (258)
T ss_pred HHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEECCEE
Confidence 9999999999 5999999999999999999999999999998 57899999999986 57789999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
++.|++++..
T Consensus 220 ~~~~~~~~~~ 229 (258)
T PRK13548 220 VADGTPAEVL 229 (258)
T ss_pred EeeCCHHHHh
Confidence 9999987654
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=360.21 Aligned_cols=215 Identities=29% Similarity=0.444 Sum_probs=179.4
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++.. ....++|+|+|+++++||+++|+|||||||||||++|+|+++|++|+|.++|+++..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~ 72 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKL 72 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccc
Confidence 6889999987511 001369999999999999999999999999999999999999999999999998742
Q ss_pred ------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHH-HHHHHHHcCCC-cccccccCCCCCCc
Q 010509 118 ------QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKC-AEAVMTELGLS-ECKNSLIGGPLTRG 187 (508)
Q Consensus 118 ------~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~vg~~~~~~ 187 (508)
..++.++|++|++ .+++.+||+||+.+......+ . ..++..+. ++++++.+++. +..++.+ ..
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~ 145 (228)
T cd03257 73 SRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-L-SKKEARKEAVLLLLVGVGLPEEVLNRYP-----HE 145 (228)
T ss_pred chhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC-C-cHHHHHHHHHHHHHHHCCCChhHhhCCc-----hh
Confidence 2456899999998 567789999999876543211 1 12222222 36889999995 5566655 48
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+++|++++|++|++
T Consensus 146 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i 224 (228)
T cd03257 146 LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYAGKI 224 (228)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeCCEE
Confidence 9999999999999999999999999999999999999999999999875 899999999986 57778999999999999
Q ss_pred EEEc
Q 010509 267 LYSG 270 (508)
Q Consensus 267 v~~G 270 (508)
+..|
T Consensus 225 ~~~g 228 (228)
T cd03257 225 VEEG 228 (228)
T ss_pred EecC
Confidence 8654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-46 Score=357.50 Aligned_cols=207 Identities=28% Similarity=0.499 Sum_probs=181.2
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~ 67 (213)
T cd03262 1 IEIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDD 67 (213)
T ss_pred CEEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCcc
Confidence 46789998875 3569999999999999999999999999999999999999999999999998731
Q ss_pred -----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 -----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 -----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
..++.++|++|++.+++.+|+.||+.+..... ...+.++..++++++++.+|+.+..++.+ ++|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 140 (213)
T cd03262 68 KKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKV--KGMSKAEAEERALELLEKVGLADKADAYP-----AQLSGGQ 140 (213)
T ss_pred chhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHHH
Confidence 34568999999999999999999998864311 12234455567889999999988777765 4899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
|||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+++|++++|++|++
T Consensus 141 ~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 141 QQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999999999877899999999986 57789999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=370.51 Aligned_cols=216 Identities=25% Similarity=0.385 Sum_probs=188.7
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|+++.++. ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~ 69 (274)
T PRK13644 2 IRLENVSYSYPD------------GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDF 69 (274)
T ss_pred EEEEEEEEEcCC------------CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCcc
Confidence 788999998741 2469999999999999999999999999999999999999999999999998742
Q ss_pred ----hccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 ----QMTRNTGFVTQEDV-LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
..++.++|++|++. .+...|+.||+.+..... ..+..+..++++++++.+||.+..++.++ .|||||
T Consensus 70 ~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~ 141 (274)
T PRK13644 70 SKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSPK-----TLSGGQ 141 (274)
T ss_pred ccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCcc-----cCCHHH
Confidence 34567999999975 356689999998865432 23455556778999999999988777654 899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
|||++||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++.. + ..+|++++|++|++++.|++
T Consensus 142 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~-~-~~~d~v~~l~~G~i~~~g~~ 219 (274)
T PRK13644 142 GQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE-L-HDADRIIVMDRGKIVLEGEP 219 (274)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-hhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999998779999999999874 5 46999999999999999998
Q ss_pred hhHH
Q 010509 273 SGAM 276 (508)
Q Consensus 273 ~~~~ 276 (508)
++..
T Consensus 220 ~~~~ 223 (274)
T PRK13644 220 ENVL 223 (274)
T ss_pred HHHh
Confidence 8764
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=365.13 Aligned_cols=216 Identities=26% Similarity=0.426 Sum_probs=188.4
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++||++.++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++..
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~ 67 (252)
T TIGR03005 1 VRFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHM 67 (252)
T ss_pred CEEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccc
Confidence 46889999875 3569999999999999999999999999999999999999999999999987631
Q ss_pred ----------------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccC
Q 010509 118 ----------------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIG 181 (508)
Q Consensus 118 ----------------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 181 (508)
..++.++|++|++.+++.+|+.||+.++.... ......+..+.++++++.+|+.+..++.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~- 144 (252)
T TIGR03005 68 PGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHMP- 144 (252)
T ss_pred ccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcCh-
Confidence 23568999999999999999999998754221 12234455567889999999988777655
Q ss_pred CCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEE
Q 010509 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLL 260 (508)
Q Consensus 182 ~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~l 260 (508)
++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++. .+.+++||+++
T Consensus 145 ----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~ 219 (252)
T TIGR03005 145 ----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCF 219 (252)
T ss_pred ----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEE
Confidence 489999999999999999999999999999999999999999999999875 899999999986 57788999999
Q ss_pred EeCCeEEEEcChhhH
Q 010509 261 LSEGYPLYSGEASGA 275 (508)
Q Consensus 261 L~~G~iv~~G~~~~~ 275 (508)
|++|++++.|+.++.
T Consensus 220 l~~G~i~~~g~~~~~ 234 (252)
T TIGR03005 220 FDKGRIVEQGKPDEI 234 (252)
T ss_pred EECCEEEEeCCHHHH
Confidence 999999999987765
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=362.71 Aligned_cols=227 Identities=29% Similarity=0.402 Sum_probs=187.9
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC--CCcccEEEECCEeCC
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL--GRINGRITYNGKPFS 116 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~--~~~~G~I~~~G~~~~ 116 (508)
|+++|++++++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+. +|++|+|.++|+++.
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 67 (243)
T TIGR01978 1 LKIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLL 67 (243)
T ss_pred CeEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecC
Confidence 46789998875 356999999999999999999999999999999999995 689999999999874
Q ss_pred h----h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC--C--CCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 010509 117 N----Q-MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP--N--SFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTR 186 (508)
Q Consensus 117 ~----~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~--~--~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 186 (508)
. . .+..++|++|++.+++.+|++|++.+....... . ..+..+..++++++++.+||. +..++.++ .
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 143 (243)
T TIGR01978 68 ELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----E 143 (243)
T ss_pred CCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----c
Confidence 3 2 234589999999999999999999876432210 0 112334456788999999997 45565543 2
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhh-ccEEEEEeCCe
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYM-FHKVLLLSEGY 265 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~-~D~v~lL~~G~ 265 (508)
+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|++|+
T Consensus 144 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~G~ 222 (243)
T TIGR01978 144 GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLDGR 222 (243)
T ss_pred CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeCCE
Confidence 59999999999999999999999999999999999999999999999877899999999986 46666 79999999999
Q ss_pred EEEEcChhhHHHHHHhcCC
Q 010509 266 PLYSGEASGAMNYFASIGY 284 (508)
Q Consensus 266 iv~~G~~~~~~~~f~~~g~ 284 (508)
+++.|++++.. .+...+|
T Consensus 223 i~~~g~~~~~~-~~~~~~~ 240 (243)
T TIGR01978 223 IVKSGDVELAK-ELEEKGY 240 (243)
T ss_pred EEEecCHHHhc-cccccCc
Confidence 99999987543 3443333
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-46 Score=357.42 Aligned_cols=205 Identities=30% Similarity=0.513 Sum_probs=176.3
Q ss_pred EEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh---
Q 010509 41 FEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--- 117 (508)
Q Consensus 41 ~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--- 117 (508)
++|+++.++. ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 2 ~~~l~~~~~~-----------~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~ 70 (211)
T cd03225 2 LKNLSFSYPD-----------GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSL 70 (211)
T ss_pred ceeEEEecCC-----------CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCH
Confidence 5788887641 01579999999999999999999999999999999999999999999999998742
Q ss_pred -hccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 -QMTRNTGFVTQEDV-LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 -~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.++|++|++. .++.+|++||+.+..... .....+..++++++++.+||.+..++.+ +.||||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qr 142 (211)
T cd03225 71 KELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQR 142 (211)
T ss_pred HHHHhhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHH
Confidence 34567999999975 366789999998865432 1233444567889999999987777665 4899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+..+||++++|++|+
T Consensus 143 v~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 143 VAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999999999999877999999999986 5778899999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=376.64 Aligned_cols=230 Identities=25% Similarity=0.422 Sum_probs=194.5
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..|+++||++.+......+. ..+...+|+|||++|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~---~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~ 80 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFK---PERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLL 80 (327)
T ss_pred ceEEEeeeEEEEcCCCCccc---cCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcC
Confidence 36999999999863211000 011357999999999999999999999999999999999999999999999999874
Q ss_pred h-------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCC
Q 010509 117 N-------QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTR 186 (508)
Q Consensus 117 ~-------~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~ 186 (508)
. ..++.++||+|++ .+.|.+|+.+++....... ....+++.++++.++++.+||.+ ..++. ++
T Consensus 81 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p~ 153 (327)
T PRK11308 81 KADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYDRY-----PH 153 (327)
T ss_pred cCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhcCC-----Cc
Confidence 2 2456899999997 5899999999998765432 12345566778999999999963 45554 46
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
+|||||||||+||+||+.+|++|++||||++||..++.++++.|+++.++ |.|+|++|||++ .+.+++|++++|++|+
T Consensus 154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~G~ 232 (327)
T PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYLGR 232 (327)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999764 999999999986 5778999999999999
Q ss_pred EEEEcChhhHHH
Q 010509 266 PLYSGEASGAMN 277 (508)
Q Consensus 266 iv~~G~~~~~~~ 277 (508)
+++.|+++++.+
T Consensus 233 ive~g~~~~~~~ 244 (327)
T PRK11308 233 CVEKGTKEQIFN 244 (327)
T ss_pred EEEECCHHHHhc
Confidence 999999887753
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-45 Score=368.58 Aligned_cols=221 Identities=24% Similarity=0.360 Sum_probs=187.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++|++++++... ...+++|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~~~--------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~ 73 (280)
T PRK13649 2 GINLQNVSYTYQAGT--------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITS 73 (280)
T ss_pred eEEEEEEEEEcCCCC--------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc
Confidence 488999999875210 001469999999999999999999999999999999999999999999999998642
Q ss_pred --------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 010509 118 --------QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTR 186 (508)
Q Consensus 118 --------~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 186 (508)
..++.++|++|++ .+++ .||+||+.+..... ..+.++..++++++++.+||. +..++.+ +
T Consensus 74 ~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 144 (280)
T PRK13649 74 TSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNP-----F 144 (280)
T ss_pred cccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCc-----c
Confidence 2456799999996 4555 69999998765332 123445556788999999997 4556555 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+..++|++++|++|++
T Consensus 145 ~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i 223 (280)
T PRK13649 145 ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKGKL 223 (280)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEECCEE
Confidence 89999999999999999999999999999999999999999999999877999999999986 57788999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
+..|++++..
T Consensus 224 ~~~g~~~~~~ 233 (280)
T PRK13649 224 VLSGKPKDIF 233 (280)
T ss_pred EEeCCHHHHh
Confidence 9999988763
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=366.39 Aligned_cols=219 Identities=23% Similarity=0.393 Sum_probs=189.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~ 68 (255)
T PRK11231 2 TLRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISM 68 (255)
T ss_pred EEEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHH
Confidence 588999999875 3579999999999999999999999999999999999999999999999998642
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP-NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
..++.++|++|++.+++.+|+.||+.++...... ....+++..++++++++.+||.+..++.+ +.|||||
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 143 (255)
T PRK11231 69 LSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL-----TDLSGGQ 143 (255)
T ss_pred CCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc-----ccCCHHH
Confidence 3456799999999988899999999875311000 01112234456889999999988777765 4899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
|||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+++|++++|++|+++..|++
T Consensus 144 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~ 222 (255)
T PRK11231 144 RQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLANGHVMAQGTP 222 (255)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEECCeEEEEcCH
Confidence 99999999999999999999999999999999999999999877999999999986 57789999999999999999988
Q ss_pred hhH
Q 010509 273 SGA 275 (508)
Q Consensus 273 ~~~ 275 (508)
++.
T Consensus 223 ~~~ 225 (255)
T PRK11231 223 EEV 225 (255)
T ss_pred HHh
Confidence 765
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-45 Score=364.51 Aligned_cols=215 Identities=23% Similarity=0.400 Sum_probs=185.4
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-----cccEEEEC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-----INGRITYN 111 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-----~~G~I~~~ 111 (508)
..++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++|+|.++
T Consensus 11 ~~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~ 77 (258)
T PRK14268 11 PQIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIE 77 (258)
T ss_pred eeEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEEC
Confidence 4699999999864 35699999999999999999999999999999999999864 79999999
Q ss_pred CEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----cccccccC
Q 010509 112 GKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS----ECKNSLIG 181 (508)
Q Consensus 112 G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg 181 (508)
|+++.. ..++.++|++|++.+++ +|++||+.+..... ..+.++..++++++++.+|+. +..++.+
T Consensus 78 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~- 152 (258)
T PRK14268 78 GEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSPA- 152 (258)
T ss_pred CEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCCh-
Confidence 998632 24567999999998888 89999999865432 123444456788899999984 3344444
Q ss_pred CCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 182 ~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||++. .+.++||++++|
T Consensus 153 ----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l 226 (258)
T PRK14268 153 ----LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFF 226 (258)
T ss_pred ----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEE
Confidence 58999999999999999999999999999999999999999999999965 799999999986 567889999999
Q ss_pred eCCeEEEEcChhhH
Q 010509 262 SEGYPLYSGEASGA 275 (508)
Q Consensus 262 ~~G~iv~~G~~~~~ 275 (508)
++|++++.|+++++
T Consensus 227 ~~G~i~~~~~~~~~ 240 (258)
T PRK14268 227 LMGELIEFGQTRQI 240 (258)
T ss_pred ECCEEEEeCCHHHH
Confidence 99999999998765
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-45 Score=367.44 Aligned_cols=228 Identities=29% Similarity=0.460 Sum_probs=193.6
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|+++++.. .+.+++|+|+++++||+++|+||||||||||+++|+|+++|.+|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~ 69 (275)
T PRK13639 2 LETRDLKYSYPD------------GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYD 69 (275)
T ss_pred EEEEEEEEEeCC------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccc
Confidence 789999998741 2469999999999999999999999999999999999999999999999998731
Q ss_pred -----hccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 118 -----QMTRNTGFVTQEDV-LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 118 -----~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
..++.++|++|++. .+...||.||+.+..... ....++..+++.++++.+||.+..++.++ +||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LS~G 141 (275)
T PRK13639 70 KKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPPH-----HLSGG 141 (275)
T ss_pred cchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCChh-----hCCHH
Confidence 24568999999963 333479999998764321 23445556778899999999988887764 89999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
||||++||++|+.+|++++|||||+|||+.++..+++.|++++++|.|||++||++. .+.++||++++|++|+++..|+
T Consensus 142 q~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~ 220 (275)
T PRK13639 142 QKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSDGKIIKEGT 220 (275)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999999877999999999986 5778899999999999999999
Q ss_pred hhhHHH---HHHhcCCCCC
Q 010509 272 ASGAMN---YFASIGYCPS 287 (508)
Q Consensus 272 ~~~~~~---~f~~~g~~~p 287 (508)
+++... .....|...|
T Consensus 221 ~~~~~~~~~~~~~~~~~~~ 239 (275)
T PRK13639 221 PKEVFSDIETIRKANLRLP 239 (275)
T ss_pred HHHHhcChHHHHhcCCCCC
Confidence 988743 3444555443
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=356.83 Aligned_cols=210 Identities=30% Similarity=0.501 Sum_probs=179.8
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++.. .+.+++|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~ 72 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKL 72 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhc
Confidence 6789999987521 012569999999999999999999999999999999999999999999999998742
Q ss_pred ---h---cc-ccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 118 ---Q---MT-RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 ---~---~~-~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
. .+ +.++|++|++.+++.+|++||+.+....+ .....+..+++.++++.+||.+..++.++ .|||
T Consensus 73 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 144 (221)
T TIGR02211 73 SSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHRPS-----ELSG 144 (221)
T ss_pred CHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCH
Confidence 1 22 57999999999999999999998865432 12333445678899999999887776654 8999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+. .+|++++|++|+++
T Consensus 145 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~-~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 145 GERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LAK-KLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHh-hcCEEEEEeCCEec
Confidence 9999999999999999999999999999999999999999999764 899999999987 454 47999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=368.01 Aligned_cols=219 Identities=26% Similarity=0.438 Sum_probs=190.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++. .+.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 70 (277)
T PRK13652 3 LIETRDLCYSYSG------------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITK 70 (277)
T ss_pred eEEEEEEEEEeCC------------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc
Confidence 4889999998741 2459999999999999999999999999999999999999999999999998742
Q ss_pred ----hccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 ----QMTRNTGFVTQEDV-LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
..++.++|++|++. .+...||.||+.+..... ..+.++..++++++++.+||.+..++.+. .|||||
T Consensus 71 ~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq 142 (277)
T PRK13652 71 ENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVPH-----HLSGGE 142 (277)
T ss_pred CCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCcc-----cCCHHH
Confidence 34567999999973 233579999998765322 23455556678999999999988777664 899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
|||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.|||+++|++|++++.|+
T Consensus 143 ~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~ 221 (277)
T PRK13652 143 KKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGT 221 (277)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEEECC
Confidence 99999999999999999999999999999999999999999875 899999999986 5778999999999999999999
Q ss_pred hhhHHH
Q 010509 272 ASGAMN 277 (508)
Q Consensus 272 ~~~~~~ 277 (508)
+++..+
T Consensus 222 ~~~~~~ 227 (277)
T PRK13652 222 VEEIFL 227 (277)
T ss_pred HHHHhc
Confidence 988753
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-45 Score=375.55 Aligned_cols=226 Identities=26% Similarity=0.448 Sum_probs=193.1
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCc---ccEEEECCE
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI---NGRITYNGK 113 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~---~G~I~~~G~ 113 (508)
..|+++||++.+.... +...+|+||||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|+
T Consensus 11 ~~L~i~~l~~~~~~~~---------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~ 81 (330)
T PRK09473 11 ALLDVKDLRVTFSTPD---------GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGR 81 (330)
T ss_pred ceEEEeCeEEEEecCC---------CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCE
Confidence 4699999999885211 1356999999999999999999999999999999999999875 999999999
Q ss_pred eCCh----h---cc-ccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCC
Q 010509 114 PFSN----Q---MT-RNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGP 183 (508)
Q Consensus 114 ~~~~----~---~~-~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 183 (508)
++.. . .+ +.++||+|++ .+.|.+|+.+++........ ..+.++..+++.++++.+||.+..+. . +.
T Consensus 82 ~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~-~-~~ 157 (330)
T PRK09473 82 EILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR-M-KM 157 (330)
T ss_pred ECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH-h-cC
Confidence 8742 1 22 4799999998 68899999999987654321 23556667788999999999764322 2 25
Q ss_pred CCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEe
Q 010509 184 LTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 184 ~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
++++|||||||||+||+||+.+|++|++||||+|||+.++.++++.|++++++ |.|+|++|||++ .+.+++||+++|+
T Consensus 158 ~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~ 236 (330)
T PRK09473 158 YPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMY 236 (330)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 66799999999999999999999999999999999999999999999999875 999999999986 5778899999999
Q ss_pred CCeEEEEcChhhHH
Q 010509 263 EGYPLYSGEASGAM 276 (508)
Q Consensus 263 ~G~iv~~G~~~~~~ 276 (508)
+|++++.|+++++.
T Consensus 237 ~G~ive~g~~~~i~ 250 (330)
T PRK09473 237 AGRTMEYGNARDVF 250 (330)
T ss_pred CCEEEEECCHHHHH
Confidence 99999999998875
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-46 Score=358.43 Aligned_cols=209 Identities=31% Similarity=0.525 Sum_probs=176.0
Q ss_pred EEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhcc
Q 010509 41 FEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMT 120 (508)
Q Consensus 41 ~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~ 120 (508)
++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++. ..+
T Consensus 2 ~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-~~~ 67 (213)
T cd03235 2 VEDLTVSYG-------------GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-KER 67 (213)
T ss_pred cccceeEEC-------------CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-HHH
Confidence 567877764 356999999999999999999999999999999999999999999999998764 345
Q ss_pred ccEEEEecCCCCC--CCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHH
Q 010509 121 RNTGFVTQEDVLS--PYLTVTETMVFTALLQLP-NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVS 197 (508)
Q Consensus 121 ~~i~yv~Q~~~l~--~~lTv~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 197 (508)
+.++|++|++.++ ..+||+||+.+....... .....++..++++++++.+|+.+..++.++ +||||||||++
T Consensus 68 ~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~ 142 (213)
T cd03235 68 KRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIG-----ELSGGQQQRVL 142 (213)
T ss_pred hheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHHHHHHH
Confidence 6799999998763 337999999875432110 001123345678899999999877776654 89999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 198 IGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 198 Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+++|++++|++| +++.|
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence 999999999999999999999999999999999999878999999999986 577889999999886 56554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-45 Score=364.88 Aligned_cols=231 Identities=21% Similarity=0.331 Sum_probs=195.3
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
+..++++|++++++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus 5 ~~~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~ 73 (269)
T PRK13648 5 NSIIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAI 73 (269)
T ss_pred CceEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 346999999998751 024589999999999999999999999999999999999999999999999987
Q ss_pred Ch----hccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 116 SN----QMTRNTGFVTQEDV-LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 116 ~~----~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
.. ..++.++|++|++. +++..|+.+|+.+..... ....++..++++++++.+|+.+..++.+ ++|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEP-----NALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCc-----ccCCH
Confidence 43 34668999999974 677789999998864322 2234455567889999999988777665 48999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
|||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++. +.. +||+++|++|++++.
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~~-~d~i~~l~~G~i~~~ 223 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AME-ADHVIVMNKGTVYKE 223 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hhc-CCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999764 8999999999874 554 999999999999999
Q ss_pred cChhhHHH---HHHhcCCCCC
Q 010509 270 GEASGAMN---YFASIGYCPS 287 (508)
Q Consensus 270 G~~~~~~~---~f~~~g~~~p 287 (508)
|++++..+ .+...|.++|
T Consensus 224 g~~~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK13648 224 GTPTEIFDHAEELTRIGLDLP 244 (269)
T ss_pred cCHHHHhcCHHHHHhcCCCCC
Confidence 99887633 4445555544
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-45 Score=366.76 Aligned_cols=221 Identities=23% Similarity=0.381 Sum_probs=189.8
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..|+++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 10 ~~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 76 (265)
T PRK10575 10 TTFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLE 76 (265)
T ss_pred ceEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehh
Confidence 3699999999875 357999999999999999999999999999999999999999999999999864
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPN-SFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
. ..++.++|++|++.+++.+|+.||+.+........ ...+....++++++++.+||.+..++.++ +||||
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 151 (265)
T PRK10575 77 SWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVD-----SLSGG 151 (265)
T ss_pred hCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc-----cCCHH
Confidence 2 34567999999988889999999998753211000 01112334568899999999887777664 89999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ .+.+.+|++++|++|+++..|
T Consensus 152 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~G~i~~~~ 230 (265)
T PRK10575 152 ERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRGGEMIAQG 230 (265)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEec
Confidence 999999999999999999999999999999999999999999765 899999999986 577899999999999999999
Q ss_pred ChhhHH
Q 010509 271 EASGAM 276 (508)
Q Consensus 271 ~~~~~~ 276 (508)
++++..
T Consensus 231 ~~~~~~ 236 (265)
T PRK10575 231 TPAELM 236 (265)
T ss_pred CHHHhc
Confidence 887653
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-45 Score=361.34 Aligned_cols=218 Identities=24% Similarity=0.378 Sum_probs=187.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~~G 112 (508)
.++++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+ |++|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14247 3 KIEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDG 69 (250)
T ss_pred eEEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECC
Confidence 588999999875 3569999999999999999999999999999999999986 4799999999
Q ss_pred EeCCh----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCCC
Q 010509 113 KPFSN----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE----CKNSLIGGPL 184 (508)
Q Consensus 113 ~~~~~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~ 184 (508)
+++.. ..++.++|++|++.+++.+||.||+.+....+.. ..+.++..+.++++++.+||.+ ..++.
T Consensus 70 ~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~----- 143 (250)
T PRK14247 70 QDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP----- 143 (250)
T ss_pred EECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----
Confidence 98742 3466899999999888999999999886543211 1133445567889999999964 33444
Q ss_pred CCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ |+|+|++||+++ .+.+.+|++++|++|
T Consensus 144 ~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G 221 (250)
T PRK14247 144 AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYKG 221 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEECC
Confidence 458999999999999999999999999999999999999999999999965 799999999986 577889999999999
Q ss_pred eEEEEcChhhHH
Q 010509 265 YPLYSGEASGAM 276 (508)
Q Consensus 265 ~iv~~G~~~~~~ 276 (508)
+++..|++++..
T Consensus 222 ~i~~~g~~~~~~ 233 (250)
T PRK14247 222 QIVEWGPTREVF 233 (250)
T ss_pred eEEEECCHHHHH
Confidence 999999988763
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=365.48 Aligned_cols=207 Identities=25% Similarity=0.418 Sum_probs=184.1
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~- 77 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA- 77 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-
Confidence 599999999875 356999999999999999999999999999999999999999999999998764
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVS 197 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 197 (508)
..++.++|++|++.+++.+||+||+.+... . ...++++++++.+||.+..++.+ ++||||||||++
T Consensus 78 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkqrl~ 143 (257)
T PRK11247 78 EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWP-----AALSGGQKQRVA 143 (257)
T ss_pred HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHH
Confidence 346779999999999999999999987421 0 12356788999999988777665 489999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 198 IGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 198 Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++|||++ .+.+++|++++|++|++++.|+.+
T Consensus 144 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 144 LARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999999999999999865 5899999999986 567889999999999999988754
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-45 Score=383.96 Aligned_cols=230 Identities=23% Similarity=0.349 Sum_probs=196.4
Q ss_pred eEEEEeEEEEEecccccc-----------CcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCccc
Q 010509 38 TLKFEDIVYKIKMKKGFY-----------GSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRING 106 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~-----------~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G 106 (508)
.|+++||++.++...... ...+.++...+|+|+||++++||+++|+||||||||||||+|+|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 589999999876432100 001234455699999999999999999999999999999999999999999
Q ss_pred EEEECCEeCCh----h----ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 010509 107 RITYNGKPFSN----Q----MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNS 178 (508)
Q Consensus 107 ~I~~~G~~~~~----~----~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 178 (508)
+|.++|+++.. . .++.++||+|++.+++.+||+||+.+....+ ..+.++..++++++++.+||.+..++
T Consensus 84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~ 160 (400)
T PRK10070 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHS 160 (400)
T ss_pred EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhc
Confidence 99999998743 1 1357999999999999999999999876543 23445556788999999999988777
Q ss_pred ccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccE
Q 010509 179 LIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHK 257 (508)
Q Consensus 179 ~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~ 257 (508)
.+ ++|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++++ .|+|||++||+++ ++.+++|+
T Consensus 161 ~~-----~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dr 234 (400)
T PRK10070 161 YP-----DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDR 234 (400)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCE
Confidence 65 48999999999999999999999999999999999999999999999975 5899999999986 57789999
Q ss_pred EEEEeCCeEEEEcChhhHH
Q 010509 258 VLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 258 v~lL~~G~iv~~G~~~~~~ 276 (508)
+++|++|+++..|+++++.
T Consensus 235 i~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 235 IAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred EEEEECCEEEecCCHHHHH
Confidence 9999999999999987653
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-45 Score=361.94 Aligned_cols=221 Identities=22% Similarity=0.361 Sum_probs=185.2
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEE
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITY 110 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~ 110 (508)
|..|+++|++++++ ++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.+
T Consensus 4 ~~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 70 (253)
T PRK14242 4 PPKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILL 70 (253)
T ss_pred CcEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEE
Confidence 34699999999875 3469999999999999999999999999999999999864 58999999
Q ss_pred CCEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCC
Q 010509 111 NGKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPL 184 (508)
Q Consensus 111 ~G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 184 (508)
+|+++.. ..++.++|++|++.+++ .||+||+.+....+. ....++..++++++++.+|+.+...+.. +..
T Consensus 71 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~ 146 (253)
T PRK14242 71 DGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRL-HES 146 (253)
T ss_pred CCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCC
Confidence 9998742 23568999999998888 599999988754321 1123344567888999999864221111 133
Q ss_pred CCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||++||+++ .+.+++|++++|++|
T Consensus 147 ~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~G 224 (253)
T PRK14242 147 ALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYMG 224 (253)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEECC
Confidence 468999999999999999999999999999999999999999999999965 799999999986 577899999999999
Q ss_pred eEEEEcChhhH
Q 010509 265 YPLYSGEASGA 275 (508)
Q Consensus 265 ~iv~~G~~~~~ 275 (508)
+++..|++++.
T Consensus 225 ~i~~~g~~~~~ 235 (253)
T PRK14242 225 KLIEVGPTEQI 235 (253)
T ss_pred EEEEeCCHHHH
Confidence 99999988765
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-45 Score=361.93 Aligned_cols=217 Identities=22% Similarity=0.365 Sum_probs=185.2
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-----cccEEEEC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-----INGRITYN 111 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-----~~G~I~~~ 111 (508)
..++++|++++++ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++| ++|+|.++
T Consensus 6 ~~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 72 (254)
T PRK14273 6 AIIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYE 72 (254)
T ss_pred ceEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEEC
Confidence 3699999999875 35699999999999999999999999999999999999875 58999999
Q ss_pred CEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----cccccccC
Q 010509 112 GKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS----ECKNSLIG 181 (508)
Q Consensus 112 G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg 181 (508)
|+++.. ..++.++|++|++.+++ +||+||+.+...... .....+..++++++++.+++. +..++.+
T Consensus 73 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~- 148 (254)
T PRK14273 73 GKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTNA- 148 (254)
T ss_pred CEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCCc-
Confidence 998631 34668999999988885 899999988654321 112334456788899999883 3345444
Q ss_pred CCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 182 ~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
++||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++++ +.|||++||+++ .+.+++||+++|
T Consensus 149 ----~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l 222 (254)
T PRK14273 149 ----LSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGRISDRTAFF 222 (254)
T ss_pred ----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 58999999999999999999999999999999999999999999999964 799999999986 577889999999
Q ss_pred eCCeEEEEcChhhHH
Q 010509 262 SEGYPLYSGEASGAM 276 (508)
Q Consensus 262 ~~G~iv~~G~~~~~~ 276 (508)
++|+++..|+++++.
T Consensus 223 ~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 223 LNGCIEEESSTDELF 237 (254)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988763
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=356.17 Aligned_cols=210 Identities=25% Similarity=0.414 Sum_probs=185.1
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChh
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ 118 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~ 118 (508)
|+++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...
T Consensus 1 l~l~~v~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~ 67 (223)
T TIGR03740 1 LETKNLSKRFG-------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK 67 (223)
T ss_pred CEEEeEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc
Confidence 46789988764 35699999999999999999999999999999999999999999999999987543
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHH
Q 010509 119 MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSI 198 (508)
Q Consensus 119 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 198 (508)
.++.++|++|++.+++.+|++||+.+....+ ... .+++.++++.+||.+..++.++ .||||||||++|
T Consensus 68 ~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~rv~l 135 (223)
T TIGR03740 68 DLHKIGSLIESPPLYENLTARENLKVHTTLL---GLP----DSRIDEVLNIVDLTNTGKKKAK-----QFSLGMKQRLGI 135 (223)
T ss_pred ccccEEEEcCCCCccccCCHHHHHHHHHHHc---CCC----HHHHHHHHHHcCCcHHHhhhHh-----hCCHHHHHHHHH
Confidence 2357999999999999999999998765432 111 2357789999999988777654 899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 199 GQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 199 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
|++++.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.+|++++|++|++++.|++.+
T Consensus 136 aral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 136 AIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999999999999999877999999999986 5778999999999999999998753
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-45 Score=374.30 Aligned_cols=225 Identities=24% Similarity=0.385 Sum_probs=189.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC----CcccEEEECCE
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG----RINGRITYNGK 113 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~----~~~G~I~~~G~ 113 (508)
.|+++||++.++.. .+...+|+||||++++||+++|+|+||||||||+++|+|+++ +++|+|.++|+
T Consensus 3 ~L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~ 73 (326)
T PRK11022 3 LLNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQ 73 (326)
T ss_pred eEEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCE
Confidence 48999999998521 112569999999999999999999999999999999999986 48999999999
Q ss_pred eCCh----h----ccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCC
Q 010509 114 PFSN----Q----MTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGP 183 (508)
Q Consensus 114 ~~~~----~----~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 183 (508)
++.. . .++.++||+|++ .+.|.+|+.+++....... .....++.++++.++++.+||.+..+. -+.
T Consensus 74 ~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~--~~~~~~~~~~~~~~~L~~~gL~~~~~~--l~~ 149 (326)
T PRK11022 74 DLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVH--QGGNKKTRRQRAIDLLNQVGIPDPASR--LDV 149 (326)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHHH--HhC
Confidence 8742 1 124699999998 5889999999887654432 123455667889999999999753211 123
Q ss_pred CCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 184 LTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 184 ~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
++++|||||||||+||+||+.+|++|++||||+|||+.++.++++.|+++++ .|.|+|++|||++ .+.+++|||++|+
T Consensus 150 ~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~ 228 (326)
T PRK11022 150 YPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMY 228 (326)
T ss_pred CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 4569999999999999999999999999999999999999999999999986 5999999999987 5778999999999
Q ss_pred CCeEEEEcChhhHH
Q 010509 263 EGYPLYSGEASGAM 276 (508)
Q Consensus 263 ~G~iv~~G~~~~~~ 276 (508)
+|+++..|+++++.
T Consensus 229 ~G~ive~g~~~~~~ 242 (326)
T PRK11022 229 AGQVVETGKAHDIF 242 (326)
T ss_pred CCEEEEECCHHHHh
Confidence 99999999998875
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-45 Score=366.06 Aligned_cols=221 Identities=23% Similarity=0.384 Sum_probs=190.4
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
.+|+++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 6 ~~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 72 (265)
T PRK10253 6 ARLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQ 72 (265)
T ss_pred cEEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhh
Confidence 4799999999875 356999999999999999999999999999999999999999999999999874
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP-NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
. ..++.++|++|++.+++.+|++||+.+......+ .....+...++++++++.+||.+..++.+ +.||||
T Consensus 73 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 147 (265)
T PRK10253 73 HYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV-----DTLSGG 147 (265)
T ss_pred hCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCChH
Confidence 2 3456799999999999999999999875311100 00011234457889999999988777665 489999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++ |.|||++||++. .+.+++|++++|++|++++.|
T Consensus 148 q~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g 226 (265)
T PRK10253 148 QRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALREGKIVAQG 226 (265)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999864 899999999986 578999999999999999999
Q ss_pred ChhhHH
Q 010509 271 EASGAM 276 (508)
Q Consensus 271 ~~~~~~ 276 (508)
++++..
T Consensus 227 ~~~~~~ 232 (265)
T PRK10253 227 APKEIV 232 (265)
T ss_pred CHHHHh
Confidence 988764
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=382.11 Aligned_cols=229 Identities=24% Similarity=0.375 Sum_probs=196.1
Q ss_pred EEEEeEEEEEeccccc------cCc-----ccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccE
Q 010509 39 LKFEDIVYKIKMKKGF------YGS-----NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGR 107 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~------~~~-----~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~ 107 (508)
|+++||.+-++..... .+. .++++...+|+|+||++++||+++|+||||||||||+++|+|+++|++|+
T Consensus 1 ~~~~~~~k~fg~~~~~~~~~~~~g~~~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~ 80 (382)
T TIGR03415 1 IDFKNVDVVFGDQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGS 80 (382)
T ss_pred CEEEeeEEeeCCCHHHHHHHHHcCCCHHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcE
Confidence 4678888877643211 011 14456788999999999999999999999999999999999999999999
Q ss_pred EEECCE----eCCh-------hc-cccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 010509 108 ITYNGK----PFSN-------QM-TRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC 175 (508)
Q Consensus 108 I~~~G~----~~~~-------~~-~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~ 175 (508)
|.++|+ ++.. .. ++.++||+|++.++|.+||+||+.++...+ ..++++.+++++++++.+||.+.
T Consensus 81 I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~ 157 (382)
T TIGR03415 81 VLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQW 157 (382)
T ss_pred EEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchh
Confidence 999997 3321 12 257999999999999999999999876442 23456667788999999999988
Q ss_pred cccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhh
Q 010509 176 KNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYM 254 (508)
Q Consensus 176 ~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~ 254 (508)
.++.++ +|||||||||+|||+|+.+|+||||||||+|||+.++.++.+.|++++++ |+|||++|||++ ++.++
T Consensus 158 ~~~~~~-----~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l 231 (382)
T TIGR03415 158 ADKKPG-----ELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKI 231 (382)
T ss_pred hcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHh
Confidence 887664 89999999999999999999999999999999999999999999999875 999999999987 57789
Q ss_pred ccEEEEEeCCeEEEEcChhhHH
Q 010509 255 FHKVLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 255 ~D~v~lL~~G~iv~~G~~~~~~ 276 (508)
+||+++|++|+++..|+++++.
T Consensus 232 ~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 232 GNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999998774
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-45 Score=360.61 Aligned_cols=218 Identities=25% Similarity=0.401 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-----cccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-----INGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-----~~G~I~~~G 112 (508)
.|+++|++++++ ++++|+|+|+++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 589999999875 35699999999999999999999999999999999999876 599999999
Q ss_pred EeCC--h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCC
Q 010509 113 KPFS--N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE----CKNSLIGG 182 (508)
Q Consensus 113 ~~~~--~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~ 182 (508)
+++. . ..++.++|++|++.+++.+||.||+.+....+.. ..+.++..++++++++.+|+.+ ..++.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 146 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDY--- 146 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccC---
Confidence 9874 1 3456799999999999999999999886543210 1133444567888999999853 23333
Q ss_pred CCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 183 PLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 183 ~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. .+..++|++++|+
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 222 (253)
T PRK14267 147 --PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEE
Confidence 458999999999999999999999999999999999999999999999975 699999999986 5778899999999
Q ss_pred CCeEEEEcChhhHH
Q 010509 263 EGYPLYSGEASGAM 276 (508)
Q Consensus 263 ~G~iv~~G~~~~~~ 276 (508)
+|+++..|++++..
T Consensus 223 ~G~i~~~~~~~~~~ 236 (253)
T PRK14267 223 LGKLIEVGPTRKVF 236 (253)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999987663
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-45 Score=364.17 Aligned_cols=228 Identities=24% Similarity=0.406 Sum_probs=190.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++|++++++.... ....+++.+|+|+|+++++||+++|+|||||||||||++|+|+++|++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~~~~----~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~ 77 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGL----FGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQ 77 (265)
T ss_pred eEEEEeEEEEeccCcc----ccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccc
Confidence 4889999998752100 000113579999999999999999999999999999999999999999999999998742
Q ss_pred -------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCc
Q 010509 118 -------QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTRG 187 (508)
Q Consensus 118 -------~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~ 187 (508)
..++.++|++|++ .+++.+||+||+.+..... ......+.+++++++++.+||. +..++.+ ++
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~ 150 (265)
T TIGR02769 78 LDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKLP-----RQ 150 (265)
T ss_pred cCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCCh-----hh
Confidence 1356799999996 4677899999998754321 1123334556788999999996 5666655 48
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+..++|++++|++|++
T Consensus 151 LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i 229 (265)
T TIGR02769 151 LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDKGQI 229 (265)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeCCEE
Confidence 9999999999999999999999999999999999999999999999865 899999999986 57788999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
++.|++++...
T Consensus 230 ~~~g~~~~~~~ 240 (265)
T TIGR02769 230 VEECDVAQLLS 240 (265)
T ss_pred EEECCHHHHcC
Confidence 99999887643
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-45 Score=365.78 Aligned_cols=219 Identities=25% Similarity=0.411 Sum_probs=190.2
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
.+++++|+++.++. +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 6 ~~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~ 74 (271)
T PRK13632 6 VMIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITIS 74 (271)
T ss_pred eEEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecC
Confidence 47999999998741 1356999999999999999999999999999999999999999999999999874
Q ss_pred h----hccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 117 N----QMTRNTGFVTQEDV-LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
. ..++.++|++|++. .++.+|++||+.+..... ..+.++.+++++++++.+||.+..++.++ .||||
T Consensus 75 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 146 (271)
T PRK13632 75 KENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEPQ-----NLSGG 146 (271)
T ss_pred cCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCcc-----cCCHH
Confidence 2 35678999999974 677789999998865322 23444556678999999999988877664 89999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ ++|||++||+++. +. .+|++++|++|+++..|
T Consensus 147 ~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~v~~l~~G~i~~~g 224 (271)
T PRK13632 147 QKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-AI-LADKVIVFSEGKLIAQG 224 (271)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-Hh-hCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999999999999876 5999999999974 44 79999999999999999
Q ss_pred ChhhHH
Q 010509 271 EASGAM 276 (508)
Q Consensus 271 ~~~~~~ 276 (508)
++++..
T Consensus 225 ~~~~~~ 230 (271)
T PRK13632 225 KPKEIL 230 (271)
T ss_pred CHHHHh
Confidence 987654
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-45 Score=363.17 Aligned_cols=218 Identities=25% Similarity=0.423 Sum_probs=187.8
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
|+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~ 68 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGL 68 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccC
Confidence 67899998875 3579999999999999999999999999999999999999999999999998743
Q ss_pred ---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 118 ---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP-NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 118 ---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
..++.++|++|++.+++.+||.||+.+....... ......+..+++.++++.+|+.+..++.++ .||||||
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~ 143 (256)
T TIGR03873 69 SRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMS-----TLSGGER 143 (256)
T ss_pred CHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcc-----cCCHHHH
Confidence 3355799999998888889999999875311000 001112334578899999999887777664 8999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||+++ .+.+++|++++|++|+++..|+++
T Consensus 144 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 222 (256)
T TIGR03873 144 QRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPPR 222 (256)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHH
Confidence 9999999999999999999999999999999999999999877899999999987 577899999999999999999987
Q ss_pred hH
Q 010509 274 GA 275 (508)
Q Consensus 274 ~~ 275 (508)
+.
T Consensus 223 ~~ 224 (256)
T TIGR03873 223 EV 224 (256)
T ss_pred Hh
Confidence 65
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-45 Score=366.09 Aligned_cols=233 Identities=22% Similarity=0.366 Sum_probs=195.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|++++++... +...+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~ 76 (280)
T PRK13633 4 MIKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSD 76 (280)
T ss_pred eEEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccc
Confidence 689999999975211 0013569999999999999999999999999999999999999999999999998742
Q ss_pred -----hccccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 118 -----QMTRNTGFVTQEDV--LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 -----~~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
..++.++|++|++. ++ ..||.|++.|..... ..++.+.+++++++++.+||.+..++.++ +|||
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~ 147 (280)
T PRK13633 77 EENLWDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAPH-----LLSG 147 (280)
T ss_pred cccHHHHhhheEEEecChhhhhc-cccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcc-----cCCH
Confidence 34678999999974 44 469999998875432 23445556778999999999988887764 9999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++. +.. +|++++|++|+++..
T Consensus 148 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~~-~d~v~~l~~G~i~~~ 225 (280)
T PRK13633 148 GQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AVE-ADRIIVMDSGKVVME 225 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hhc-CCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999976 49999999999974 544 999999999999999
Q ss_pred cChhhHHHH---HHhcCCCCCC
Q 010509 270 GEASGAMNY---FASIGYCPSV 288 (508)
Q Consensus 270 G~~~~~~~~---f~~~g~~~p~ 288 (508)
|++++.... +...++..|.
T Consensus 226 g~~~~~~~~~~~~~~~~~~~~~ 247 (280)
T PRK13633 226 GTPKEIFKEVEMMKKIGLDVPQ 247 (280)
T ss_pred cCHHHHhcChHHHHhcCCCCCc
Confidence 999887532 3345555444
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-45 Score=353.21 Aligned_cols=208 Identities=28% Similarity=0.454 Sum_probs=178.8
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ ++. .|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 i~~~~l~~~~~-------------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~ 65 (211)
T cd03298 1 VRLDKIRFSYG-------------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAA 65 (211)
T ss_pred CEEEeEEEEeC-------------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcC
Confidence 46789998864 122 39999999999999999999999999999999999999999999998743
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH
Q 010509 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 -~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 196 (508)
..++.++|++|++.+++.+|++||+.+...... .. .++.+++++++++.+||.+..++.+ .+||||||||+
T Consensus 66 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv 137 (211)
T cd03298 66 PPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQRV 137 (211)
T ss_pred CHhHccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHH
Confidence 235679999999999999999999987543211 11 1234567889999999988777765 48999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.+++|++++|++|+++..|
T Consensus 138 ~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 138 ALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999999999976 4899999999986 577889999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-45 Score=364.32 Aligned_cols=224 Identities=25% Similarity=0.420 Sum_probs=193.9
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-C----cccEEEECCE
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-R----INGRITYNGK 113 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-~----~~G~I~~~G~ 113 (508)
|+++||+.++.... +..++++||||++++||++||+|.|||||||+.++|.|+++ + .+|+|.++|+
T Consensus 2 L~v~nL~v~f~~~~---------g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTDA---------GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecCC---------ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 68999999987421 13579999999999999999999999999999999999986 3 5799999999
Q ss_pred eCCh----h----ccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHHcCCCcccccccCC
Q 010509 114 PFSN----Q----MTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSF-TEKEKIKCAEAVMTELGLSECKNSLIGG 182 (508)
Q Consensus 114 ~~~~----~----~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 182 (508)
++.+ + ..+.|+||||++ .|.|.+||.+.+.-...... .. ++++.++++.++|+.+||.+.... -+
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~~--~~ 148 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPERR--LK 148 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHHH--Hh
Confidence 7632 1 235799999997 58999999999887765432 22 456778899999999999875322 24
Q ss_pred CCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEE
Q 010509 183 PLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 183 ~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
.+|.+|||||||||.||.||+.+|++||.||||++||...+.+|+++|+++++ .|.++|++|||+. .+.++||||+||
T Consensus 149 ~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VM 227 (316)
T COG0444 149 SYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVM 227 (316)
T ss_pred hCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEE
Confidence 67899999999999999999999999999999999999999999999999986 5999999999997 688999999999
Q ss_pred eCCeEEEEcChhhHH
Q 010509 262 SEGYPLYSGEASGAM 276 (508)
Q Consensus 262 ~~G~iv~~G~~~~~~ 276 (508)
+.|++|+.|+++++.
T Consensus 228 YaG~iVE~g~~~~i~ 242 (316)
T COG0444 228 YAGRIVEEGPVEEIF 242 (316)
T ss_pred ECcEEEEeCCHHHHh
Confidence 999999999998764
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-45 Score=357.26 Aligned_cols=212 Identities=25% Similarity=0.394 Sum_probs=183.1
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
|+++|+++.++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~ 67 (230)
T TIGR03410 1 LEVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKL 67 (230)
T ss_pred CEEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCC
Confidence 46789998875 3579999999999999999999999999999999999999999999999998742
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CCcccccccCCCCCCccCHHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELG-LSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSGGe 192 (508)
..++.++|++|++.+++.+|+.||+.+....+ ... ..+.++++++.++ +.+..++.+ ++|||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~---~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~ 136 (230)
T TIGR03410 68 PPHERARAGIAYVPQGREIFPRLTVEENLLTGLAAL---PRR---SRKIPDEIYELFPVLKEMLGRRG-----GDLSGGQ 136 (230)
T ss_pred CHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhc---Ccc---hHHHHHHHHHHHHhHHHHhhCCh-----hhCCHHH
Confidence 12457999999999999999999998865432 111 1234567788776 566566655 4899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
|||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+..++|++++|++|+++..|+
T Consensus 137 ~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~ 215 (230)
T TIGR03410 137 QQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMERGRVVASGA 215 (230)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999874 899999999986 5778899999999999999999
Q ss_pred hhhH
Q 010509 272 ASGA 275 (508)
Q Consensus 272 ~~~~ 275 (508)
++++
T Consensus 216 ~~~~ 219 (230)
T TIGR03410 216 GDEL 219 (230)
T ss_pred HHHc
Confidence 8776
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=345.31 Aligned_cols=219 Identities=29% Similarity=0.494 Sum_probs=192.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+.+||+|++. ++.+|++||++++|||++||+||||||||||||.|+|.+.|++|++.+||.+++.
T Consensus 1 mi~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~ 67 (259)
T COG4559 1 MIRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNS 67 (259)
T ss_pred CeeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhh
Confidence 478899999986 5789999999999999999999999999999999999999999999999998854
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
++.++.+.+||+..+-...||+|.+.++..-.. ......+..+.++++|+..++.+.+.+.+ +.||||||
T Consensus 68 ~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~-~g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGEq 141 (259)
T COG4559 68 WPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHR-SGREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGEQ 141 (259)
T ss_pred CCHHHHHHHhhhcccCcccccceEHHHHHHhcccccc-cCCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchHH
Confidence 456788999999887556799999999753221 11122355566799999999999988776 48999999
Q ss_pred HHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 194 KRVSIGQEILI------NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 194 qRv~Ia~aL~~------~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
|||.+||.|+. ++++||||||||.||...+..++++.++++++|..|+++.||++. ...+||||++|++||++
T Consensus 142 QRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~Grv~ 220 (259)
T COG4559 142 QRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQGRVI 220 (259)
T ss_pred HHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeCCeEe
Confidence 99999999975 446999999999999999999999999999999999999999984 66899999999999999
Q ss_pred EEcChhhHH
Q 010509 268 YSGEASGAM 276 (508)
Q Consensus 268 ~~G~~~~~~ 276 (508)
.+|+|++++
T Consensus 221 a~g~p~~vl 229 (259)
T COG4559 221 ASGSPQDVL 229 (259)
T ss_pred ecCCHHHhc
Confidence 999999875
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-45 Score=354.59 Aligned_cols=214 Identities=29% Similarity=0.484 Sum_probs=183.0
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
.+|+++|++++++... ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 5 ~~l~~~~l~~~~~~~~---------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~ 75 (228)
T PRK10584 5 NIVEVHHLKKSVGQGE---------HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLH 75 (228)
T ss_pred ceEEEeeeEEEccCCC---------cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcc
Confidence 3699999999875210 0135999999999999999999999999999999999999999999999999874
Q ss_pred h----h---c-cccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCcc
Q 010509 117 N----Q---M-TRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGV 188 (508)
Q Consensus 117 ~----~---~-~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 188 (508)
. . . ++.++|++|++.+++.+|+.||+.+....+ ..+..+.+++++++++.+||.+..++.+. .|
T Consensus 76 ~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~L 147 (228)
T PRK10584 76 QMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLPA-----QL 147 (228)
T ss_pred cCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChh-----hC
Confidence 2 1 1 257999999999999999999998765332 12344556778999999999887776654 89
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 189 SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 189 SGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |.|||++||+++ .+. .+|++++|++|+++
T Consensus 148 S~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~-~~d~i~~l~~g~i~ 225 (228)
T PRK10584 148 SGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LAA-RCDRRLRLVNGQLQ 225 (228)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHH-hCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999764 899999999987 454 59999999999987
Q ss_pred EE
Q 010509 268 YS 269 (508)
Q Consensus 268 ~~ 269 (508)
..
T Consensus 226 ~~ 227 (228)
T PRK10584 226 EE 227 (228)
T ss_pred ec
Confidence 53
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-45 Score=362.56 Aligned_cols=219 Identities=27% Similarity=0.464 Sum_probs=187.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCc---ccEEEECCEe
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI---NGRITYNGKP 114 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~---~G~I~~~G~~ 114 (508)
.|+++||+++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|++
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 689999999875 357999999999999999999999999999999999998765 5999999988
Q ss_pred CCh---------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC-----CCCHHHHHHHHHHHHHHcCCCccccccc
Q 010509 115 FSN---------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPN-----SFTEKEKIKCAEAVMTELGLSECKNSLI 180 (508)
Q Consensus 115 ~~~---------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~v 180 (508)
+.. ..++.++|++|++.+++.+||.||+.+......+. ....++.+++++++++.+||.+..++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 632 23457999999999999999999998754211000 0112334567899999999988777766
Q ss_pred CCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEE
Q 010509 181 GGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVL 259 (508)
Q Consensus 181 g~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~ 259 (508)
+ +||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+..++|+++
T Consensus 151 ~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 151 S-----TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred c-----ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 4 8999999999999999999999999999999999999999999999986 4899999999986 4778999999
Q ss_pred EEeCCeEEEEcChhhH
Q 010509 260 LLSEGYPLYSGEASGA 275 (508)
Q Consensus 260 lL~~G~iv~~G~~~~~ 275 (508)
+|++|++++.|++++.
T Consensus 225 ~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 225 ALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEECCEEEEeCCHHHh
Confidence 9999999999998753
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=360.37 Aligned_cols=218 Identities=24% Similarity=0.372 Sum_probs=186.3
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEE
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITY 110 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~ 110 (508)
...++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.+
T Consensus 11 ~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~ 77 (260)
T PRK10744 11 PSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILL 77 (260)
T ss_pred CceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEE
Confidence 44699999999875 3469999999999999999999999999999999999975 47999999
Q ss_pred CCEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccc
Q 010509 111 NGKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE----CKNSLI 180 (508)
Q Consensus 111 ~G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v 180 (508)
+|+++.. ..++.++|++|++.+++ .|++||+.+...... ..+.++..++++++++.+++.+ ..++.
T Consensus 78 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 153 (260)
T PRK10744 78 DGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQS- 153 (260)
T ss_pred CCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcC-
Confidence 9998731 34668999999998887 899999987653221 2344455567889999999853 33443
Q ss_pred CCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEE
Q 010509 181 GGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLL 260 (508)
Q Consensus 181 g~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~l 260 (508)
+.+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||++. .+..++|++++
T Consensus 154 ----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~ 227 (260)
T PRK10744 154 ----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAARCSDYTAF 227 (260)
T ss_pred ----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEE
Confidence 458999999999999999999999999999999999999999999999964 789999999986 57788999999
Q ss_pred EeCCeEEEEcChhhHH
Q 010509 261 LSEGYPLYSGEASGAM 276 (508)
Q Consensus 261 L~~G~iv~~G~~~~~~ 276 (508)
|++|+++..|++++..
T Consensus 228 l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 228 MYLGELIEFGNTDTIF 243 (260)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999987663
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-45 Score=358.18 Aligned_cols=212 Identities=29% Similarity=0.447 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~ 69 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKT 69 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhh
Confidence 588999999864 3569999999999999999999999999999999999999999999999998742
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCccCHHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGe 192 (508)
..++.++|++|++.+++ .|++||+.+....+ . ...++++++++.+||. +..++.+ ..|||||
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G~ 136 (241)
T PRK14250 70 IDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRDV-----KNLSGGE 136 (241)
T ss_pred cChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCCc-----ccCCHHH
Confidence 34568999999998887 69999998653221 1 1134678899999996 4556544 4899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+++|++++|++|+++..|+
T Consensus 137 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~ 215 (241)
T PRK14250 137 AQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNKGILVEYAK 215 (241)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeCCEEEEeCC
Confidence 99999999999999999999999999999999999999999874 999999999986 5778899999999999999999
Q ss_pred hhhHH
Q 010509 272 ASGAM 276 (508)
Q Consensus 272 ~~~~~ 276 (508)
+++..
T Consensus 216 ~~~~~ 220 (241)
T PRK14250 216 TYDFF 220 (241)
T ss_pred HHHHh
Confidence 87753
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=363.93 Aligned_cols=220 Identities=25% Similarity=0.388 Sum_probs=191.0
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcc---cEEEECCE
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN---GRITYNGK 113 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~---G~I~~~G~ 113 (508)
..|+++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 4 ~~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~ 72 (282)
T PRK13640 4 NIVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGI 72 (282)
T ss_pred ceEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCE
Confidence 36999999998741 12469999999999999999999999999999999999998887 99999999
Q ss_pred eCCh----hccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCcc
Q 010509 114 PFSN----QMTRNTGFVTQEDV-LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGV 188 (508)
Q Consensus 114 ~~~~----~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 188 (508)
++.. ..++.+||++|++. .++..||.||+.+..... ..+.++..++++++++.+||.+..++.+ +.|
T Consensus 73 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 144 (282)
T PRK13640 73 TLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----ANL 144 (282)
T ss_pred ECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccC
Confidence 8753 34568999999974 667789999998764322 2345566678899999999998777665 599
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 189 SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 189 SGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
|||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++. + ..||++++|++|+++
T Consensus 145 S~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~G~i~ 222 (282)
T PRK13640 145 SGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDDGKLL 222 (282)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999865 9999999999874 5 479999999999999
Q ss_pred EEcChhhHHH
Q 010509 268 YSGEASGAMN 277 (508)
Q Consensus 268 ~~G~~~~~~~ 277 (508)
+.|++++..+
T Consensus 223 ~~g~~~~~~~ 232 (282)
T PRK13640 223 AQGSPVEIFS 232 (282)
T ss_pred EeCCHHHHhc
Confidence 9999987754
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=371.95 Aligned_cols=227 Identities=20% Similarity=0.282 Sum_probs=187.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC----CcccEEEECCE
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG----RINGRITYNGK 113 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~----~~~G~I~~~G~ 113 (508)
.|+++||++.|... .+...+|+||||+|++||+++|+|+||||||||+++|+|+++ +++|+|.++|+
T Consensus 3 ~L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~ 73 (330)
T PRK15093 3 LLDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDI 73 (330)
T ss_pred eEEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCE
Confidence 58999999998521 113569999999999999999999999999999999999985 58999999999
Q ss_pred eCCh----h----ccccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCC---CCHHHHHHHHHHHHHHcCCCccccccc
Q 010509 114 PFSN----Q----MTRNTGFVTQEDV--LSPYLTVTETMVFTALLQLPNS---FTEKEKIKCAEAVMTELGLSECKNSLI 180 (508)
Q Consensus 114 ~~~~----~----~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~l~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~v 180 (508)
++.. . .++.++||+|++. +.|.+||.+++.+......... ....+.++++.++++.+||.+..+.
T Consensus 74 ~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~-- 151 (330)
T PRK15093 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDA-- 151 (330)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHH--
Confidence 8742 1 1347999999975 6888999999976432111000 1123445678899999999753221
Q ss_pred CCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEE
Q 010509 181 GGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVL 259 (508)
Q Consensus 181 g~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~ 259 (508)
.+.++.+|||||||||+||+||+.+|++|++||||+|||+.++.++++.|+++.++ |.|||++|||++ .+.+++||++
T Consensus 152 ~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~ 230 (330)
T PRK15093 152 MRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKIN 230 (330)
T ss_pred HhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEE
Confidence 12345699999999999999999999999999999999999999999999999874 999999999986 5778999999
Q ss_pred EEeCCeEEEEcChhhHH
Q 010509 260 LLSEGYPLYSGEASGAM 276 (508)
Q Consensus 260 lL~~G~iv~~G~~~~~~ 276 (508)
+|++|++++.|+++++.
T Consensus 231 vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 231 VLYCGQTVETAPSKELV 247 (330)
T ss_pred EEECCEEEEECCHHHHH
Confidence 99999999999988764
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=360.67 Aligned_cols=220 Identities=23% Similarity=0.376 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-----cccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-----INGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-----~~G~I~~~G 112 (508)
.|+++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+| ++|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 799999999875 35699999999999999999999999999999999999864 899999999
Q ss_pred EeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 010509 113 KPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTR 186 (508)
Q Consensus 113 ~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 186 (508)
+++.. ..++.++|++|++.+++. ||.||+.+....+.. ..++.+..++++++++.+||.+...... +..++
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 162 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRL-HEPGT 162 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHh-hCCcc
Confidence 98742 245679999999988885 999999886543211 1123344567889999999964211111 12345
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+..++|++++|++|++
T Consensus 163 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~G~i 240 (267)
T PRK14235 163 GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHLGNL 240 (267)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999999976 689999999986 57789999999999999
Q ss_pred EEEcChhhH
Q 010509 267 LYSGEASGA 275 (508)
Q Consensus 267 v~~G~~~~~ 275 (508)
+..|++++.
T Consensus 241 ~~~g~~~~~ 249 (267)
T PRK14235 241 VEVGDTEKM 249 (267)
T ss_pred EEeCCHHHH
Confidence 999988765
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-45 Score=355.33 Aligned_cols=214 Identities=27% Similarity=0.436 Sum_probs=185.0
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ ++. .|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~-------------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~ 66 (232)
T PRK10771 2 LKLTDITWLYH-------------HLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTT 66 (232)
T ss_pred eEEEEEEEEEC-------------Ccc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcC
Confidence 78999999875 122 38999999999999999999999999999999999999999999998753
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH
Q 010509 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 -~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 196 (508)
..++.++|++|++.+++.+|+.||+.+...... . ..+...++++++++.+||.+..++.+. .||||||||+
T Consensus 67 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv 138 (232)
T PRK10771 67 PPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--K-LNAAQREKLHAIARQMGIEDLLARLPG-----QLSGGQRQRV 138 (232)
T ss_pred ChhhccEEEEecccccccCCcHHHHHhccccccc--C-CCHHHHHHHHHHHHHcCcHHHHhCCcc-----cCCHHHHHHH
Confidence 234679999999999999999999987532111 1 122345678999999999888877764 8999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
+||++++.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+++|++++|++|++++.|++++.
T Consensus 139 ~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~ 217 (232)
T PRK10771 139 ALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDEL 217 (232)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999764 899999999986 57788999999999999999988765
Q ss_pred H
Q 010509 276 M 276 (508)
Q Consensus 276 ~ 276 (508)
.
T Consensus 218 ~ 218 (232)
T PRK10771 218 L 218 (232)
T ss_pred H
Confidence 4
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=366.11 Aligned_cols=221 Identities=20% Similarity=0.324 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC-
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS- 116 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~- 116 (508)
.|+++|++++++... ...+.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.
T Consensus 6 ~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~ 77 (289)
T PRK13645 6 DIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPA 77 (289)
T ss_pred eEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccc
Confidence 589999999875210 00135999999999999999999999999999999999999999999999998863
Q ss_pred --------hhccccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 010509 117 --------NQMTRNTGFVTQEDV--LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLT 185 (508)
Q Consensus 117 --------~~~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~ 185 (508)
...++.++|++|++. +++ .|++||+.+..... ....++..++++++++.++|. +..++.+
T Consensus 78 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~----- 148 (289)
T PRK13645 78 NLKKIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSP----- 148 (289)
T ss_pred cccccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCCh-----
Confidence 134567999999973 444 59999998865321 223444556788899999994 5666655
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.++||++++|++|
T Consensus 149 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~G 227 (289)
T PRK13645 149 FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEG 227 (289)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECC
Confidence 48999999999999999999999999999999999999999999999976 4899999999986 577899999999999
Q ss_pred eEEEEcChhhHH
Q 010509 265 YPLYSGEASGAM 276 (508)
Q Consensus 265 ~iv~~G~~~~~~ 276 (508)
++++.|++++..
T Consensus 228 ~i~~~g~~~~~~ 239 (289)
T PRK13645 228 KVISIGSPFEIF 239 (289)
T ss_pred EEEEeCCHHHHh
Confidence 999999988764
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=354.02 Aligned_cols=216 Identities=28% Similarity=0.428 Sum_probs=189.8
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ .+.+++|+|+++++||+++|+||||||||||+++|+|.++|.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~ 67 (232)
T cd03300 1 IELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNL 67 (232)
T ss_pred CEEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC
Confidence 46789998875 3579999999999999999999999999999999999999999999999998753
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH
Q 010509 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 -~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 196 (508)
..++.++|++|++.+++.+|+.||+.+....+ ..+.....++++++++.+|+.+..++.+ +.||||||||+
T Consensus 68 ~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl 139 (232)
T cd03300 68 PPHKRPVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQRV 139 (232)
T ss_pred ChhhcceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHH
Confidence 23568999999999999999999998765433 1233445567889999999988877765 48999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.+|++++|++|++++.|+.++.
T Consensus 140 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~~~~~ 218 (232)
T cd03300 140 AIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNKGKIQQIGTPEEI 218 (232)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999999999999865 899999999986 57789999999999999999987655
Q ss_pred H
Q 010509 276 M 276 (508)
Q Consensus 276 ~ 276 (508)
.
T Consensus 219 ~ 219 (232)
T cd03300 219 Y 219 (232)
T ss_pred H
Confidence 3
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-45 Score=356.84 Aligned_cols=202 Identities=31% Similarity=0.447 Sum_probs=176.8
Q ss_pred ccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh---hccccEEEEe-cCCCCCCC
Q 010509 60 KIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN---QMTRNTGFVT-QEDVLSPY 135 (508)
Q Consensus 60 ~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~---~~~~~i~yv~-Q~~~l~~~ 135 (508)
+++.+++|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.++|+++.. ..++.++|++ |++.+++.
T Consensus 30 ~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred ccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 3456789999999999999999999999999999999999999999999999987532 3456899998 55678889
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 010509 136 LTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPT 215 (508)
Q Consensus 136 lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPt 215 (508)
+|++|++.+....+ ....++..++++++++.+||.+..++.++ .||||||||++||++|+.+|++++|||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPVR-----QLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998865432 22344455678889999999988887764 89999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 216 SGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 216 sgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
+|||+.++..+.+.|++++++ |+|||++||+++ .+..++|++++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999764 899999999986 577899999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=355.44 Aligned_cols=216 Identities=26% Similarity=0.413 Sum_probs=190.0
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|.+|+|.++|.++..
T Consensus 1 i~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~ 67 (237)
T TIGR00968 1 IEIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRV 67 (237)
T ss_pred CEEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC
Confidence 46789998875 3579999999999999999999999999999999999999999999999998753
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH
Q 010509 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 -~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 196 (508)
..++.++|++|++.+++.+|+.||+.+....+ ..+.....+.++++++.+++.+..++.++ .||||||||+
T Consensus 68 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qrl 139 (237)
T TIGR00968 68 HARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYPN-----QLSGGQRQRV 139 (237)
T ss_pred ChhhcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChh-----hCCHHHHHHH
Confidence 33567999999999999999999998765432 12333445677899999999877776654 8999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|++++|++|++++.|+.++.
T Consensus 140 ~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 218 (237)
T TIGR00968 140 ALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEV 218 (237)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999875 899999999986 57789999999999999999998876
Q ss_pred H
Q 010509 276 M 276 (508)
Q Consensus 276 ~ 276 (508)
.
T Consensus 219 ~ 219 (237)
T TIGR00968 219 Y 219 (237)
T ss_pred H
Confidence 4
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=356.25 Aligned_cols=221 Identities=22% Similarity=0.360 Sum_probs=184.2
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC---CCC--cccEEEEC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGR---LGR--INGRITYN 111 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~---~~~--~~G~I~~~ 111 (508)
++++++|+++.++ .+++|+|+|+++++||+++|+||||||||||+++|+|+ .++ ++|+|.++
T Consensus 2 ~~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~ 68 (250)
T PRK14245 2 VKIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRID 68 (250)
T ss_pred cEEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEEC
Confidence 4689999999875 35699999999999999999999999999999999997 344 58999999
Q ss_pred CEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 010509 112 GKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT 185 (508)
Q Consensus 112 G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 185 (508)
|+++.. ..++.++|++|++.+++ .|+.||+.+....+. ....+...+.++++++.+||.+...... +..+
T Consensus 69 g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~ 144 (250)
T PRK14245 69 GRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKL-KESA 144 (250)
T ss_pred CEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhh-hCCc
Confidence 998742 34567999999998887 599999987654321 1122334566889999999964321111 1234
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++||+++|++|+
T Consensus 145 ~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~v~~l~~G~ 222 (250)
T PRK14245 145 FALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK-DYTIVIVTHNMQ-QAARVSDKTAFFYMGE 222 (250)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhCCEEEEEECCE
Confidence 58999999999999999999999999999999999999999999999964 799999999986 5778899999999999
Q ss_pred EEEEcChhhHH
Q 010509 266 PLYSGEASGAM 276 (508)
Q Consensus 266 iv~~G~~~~~~ 276 (508)
+++.|+++++.
T Consensus 223 ~~~~~~~~~~~ 233 (250)
T PRK14245 223 MVEYDDTKKIF 233 (250)
T ss_pred EEEECCHHHHh
Confidence 99999988774
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=361.24 Aligned_cols=227 Identities=18% Similarity=0.383 Sum_probs=189.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++||+++++.... .++.+.+++|+|+|+++++||+++|+|||||||||||++|+|+++|++|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 79 (267)
T PRK15112 4 LLEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHF 79 (267)
T ss_pred eEEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCC
Confidence 5899999999852110 000113569999999999999999999999999999999999999999999999998742
Q ss_pred ----hccccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCccCH
Q 010509 118 ----QMTRNTGFVTQEDV--LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSG 190 (508)
..++.++|++|++. +++.+|+.|++.+...... .....+..++++++++.+||. +..++.+ .+|||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~ 152 (267)
T PRK15112 80 GDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYP-----HMLAP 152 (267)
T ss_pred CchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCc-----hhcCH
Confidence 23457999999975 6788899999987654321 123444556788999999994 5556554 48999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+..+||++++|++|+++..
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~G~i~~~ 231 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQGEVVER 231 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999999999999864 899999999986 57788999999999999999
Q ss_pred cChhhHH
Q 010509 270 GEASGAM 276 (508)
Q Consensus 270 G~~~~~~ 276 (508)
|++++..
T Consensus 232 ~~~~~~~ 238 (267)
T PRK15112 232 GSTADVL 238 (267)
T ss_pred CCHHHHh
Confidence 9887653
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=358.20 Aligned_cols=217 Identities=22% Similarity=0.356 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-----cccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-----INGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-----~~G~I~~~G 112 (508)
.++++|++++++ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+| ++|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 588999999875 35699999999999999999999999999999999999863 799999999
Q ss_pred EeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----cccccccCC
Q 010509 113 KPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS----ECKNSLIGG 182 (508)
Q Consensus 113 ~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~ 182 (508)
+++.. ..++.++|++|++.+++.+||+||+.+....+. ..+.++.+++++++++.+||. +..++.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 98631 345679999999999999999999988654321 113344556788999999984 334444
Q ss_pred CCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 183 PLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 183 ~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
+++|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+++|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~ 221 (258)
T PRK14241 146 --GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFN 221 (258)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 458999999999999999999999999999999999999999999999965 689999999986 5778999999997
Q ss_pred ------CCeEEEEcChhhHH
Q 010509 263 ------EGYPLYSGEASGAM 276 (508)
Q Consensus 263 ------~G~iv~~G~~~~~~ 276 (508)
+|++++.|++++..
T Consensus 222 ~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 222 LEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred cccCCCCceEEecCCHHHHH
Confidence 79999999987763
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=361.27 Aligned_cols=219 Identities=23% Similarity=0.392 Sum_probs=189.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++|++++++.. ..+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~ 73 (277)
T PRK13642 4 ILEVENLVFKYEKE----------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTA 73 (277)
T ss_pred eEEEEEEEEEcCCC----------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCc
Confidence 58999999987511 12459999999999999999999999999999999999999999999999998753
Q ss_pred ----hccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 ----QMTRNTGFVTQEDV-LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
..++.++|++|++. .++..||.||+.+..... ...+++..++++++++.+||.+..++.+ ..|||||
T Consensus 74 ~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 145 (277)
T PRK13642 74 ENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREP-----ARLSGGQ 145 (277)
T ss_pred CCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHH
Confidence 34678999999974 567789999998765322 2234455567899999999988777665 4899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++. +. .+|++++|++|+++..|+
T Consensus 146 ~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~~-~~d~i~~l~~G~i~~~g~ 223 (277)
T PRK13642 146 KQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-AA-SSDRILVMKAGEIIKEAA 223 (277)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HH-hCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999875 9999999999875 44 599999999999999999
Q ss_pred hhhHH
Q 010509 272 ASGAM 276 (508)
Q Consensus 272 ~~~~~ 276 (508)
+++..
T Consensus 224 ~~~~~ 228 (277)
T PRK13642 224 PSELF 228 (277)
T ss_pred HHHHh
Confidence 88764
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=375.89 Aligned_cols=197 Identities=29% Similarity=0.439 Sum_probs=176.9
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--------hccccEEEEecCCCCCCCCCHHH
Q 010509 69 GITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--------QMTRNTGFVTQEDVLSPYLTVTE 140 (508)
Q Consensus 69 ~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--------~~~~~i~yv~Q~~~l~~~lTv~E 140 (508)
|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. ..++.++|++|++.+++.+||+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 94 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG 94 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHH
Confidence 9999999999999999999999999999999999999999999998742 23567999999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 010509 141 TMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDS 220 (508)
Q Consensus 141 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~ 220 (508)
|+.++.... ...+.+++++++++.+||.+..++.+. +|||||||||+|||||+.+|++|+|||||+|||+
T Consensus 95 nl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~ 164 (354)
T TIGR02142 95 NLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLPG-----RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDD 164 (354)
T ss_pred HHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCH
Confidence 999865321 223445678999999999988887664 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHH
Q 010509 221 TIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 221 ~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~ 276 (508)
.++..+.+.|++++++ |+|||++||+++ ++..++|++++|++|+++..|+++++.
T Consensus 165 ~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 165 PRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 9999999999999875 899999999986 577899999999999999999988764
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=375.67 Aligned_cols=207 Identities=26% Similarity=0.432 Sum_probs=182.7
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
|++ ||+++++ ++. + |+|+++++||+++|+|||||||||||++|+|+++|++|+|.++|+++..
T Consensus 2 l~~-~l~k~~~-------------~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~ 65 (352)
T PRK11144 2 LEL-NFKQQLG-------------DLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDA 65 (352)
T ss_pred eEE-EEEEEeC-------------CEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccc
Confidence 566 8888764 222 3 8999999999999999999999999999999999999999999998642
Q ss_pred -------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 118 -------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 -------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
..++.++|++|+..++|.+||+||+.++.. ....++++++++.+||.+..++.+ ++|||
T Consensus 66 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSg 131 (352)
T PRK11144 66 EKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSG 131 (352)
T ss_pred ccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCH
Confidence 235689999999999999999999987532 122356889999999998887766 48999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++|||++ ++..++|++++|++|+++..
T Consensus 132 Gq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~ 210 (352)
T PRK11144 132 GEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKAF 210 (352)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999999999999875 899999999986 57889999999999999999
Q ss_pred cChhhHH
Q 010509 270 GEASGAM 276 (508)
Q Consensus 270 G~~~~~~ 276 (508)
|+++++.
T Consensus 211 g~~~~i~ 217 (352)
T PRK11144 211 GPLEEVW 217 (352)
T ss_pred cCHHHHH
Confidence 9988774
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=355.69 Aligned_cols=221 Identities=24% Similarity=0.352 Sum_probs=184.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC---CcccEEEECCEe
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG---RINGRITYNGKP 114 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~---~~~G~I~~~G~~ 114 (508)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 2 ~~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~ 68 (246)
T PRK14269 2 IAKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKD 68 (246)
T ss_pred ceeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEe
Confidence 578899999875 3569999999999999999999999999999999999873 689999999998
Q ss_pred CCh----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 115 FSN----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 115 ~~~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
+.. ..++.++|++|++.+++ .|++||+.+....+. ......+..++++++++.++|.+...... +..++.|||
T Consensus 69 i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~ 145 (246)
T PRK14269 69 VKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHG-MIKNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSG 145 (246)
T ss_pred cccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcC-cccChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCH
Confidence 753 34668999999998887 699999988653321 00012334456788999999953221111 123458999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|+|++||+++ .+.+.+|++++|++|+++..|
T Consensus 146 G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g 223 (246)
T PRK14269 146 GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHLGELIEFG 223 (246)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999875 899999999986 577899999999999999999
Q ss_pred ChhhHH
Q 010509 271 EASGAM 276 (508)
Q Consensus 271 ~~~~~~ 276 (508)
++++..
T Consensus 224 ~~~~~~ 229 (246)
T PRK14269 224 ESKEFF 229 (246)
T ss_pred CHHHHH
Confidence 987653
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=348.86 Aligned_cols=209 Identities=25% Similarity=0.418 Sum_probs=180.7
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|+++.++ .+++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 ~~~~~l~~~~~---------------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~ 65 (213)
T TIGR01277 1 LALDKVRYEYE---------------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGL 65 (213)
T ss_pred CeEEeeeEEeC---------------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccC
Confidence 46789988764 13579999999999999999999999999999999999999999999998743
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH
Q 010509 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 -~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 196 (508)
..++.++|++|++.+++.+|+.||+.+...... . ...+.+++++++++.+||.+..++.+ +.||||||||+
T Consensus 66 ~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 137 (213)
T TIGR01277 66 APYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQRV 137 (213)
T ss_pred ChhccceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHHH
Confidence 345679999999999999999999987543211 1 12223456788999999988777665 48999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+++|++++|++|+++..|+
T Consensus 138 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 138 ALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999999999999764 899999999986 5678899999999999998875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-45 Score=360.57 Aligned_cols=231 Identities=23% Similarity=0.345 Sum_probs=203.9
Q ss_pred eeEEEEeEEEEEeccccc------cCcc-----cccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcc
Q 010509 37 VTLKFEDIVYKIKMKKGF------YGSN-----KKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN 105 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~------~~~~-----~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~ 105 (508)
+.++++|+.+-++..... -+.. ++.+...-++|+|++++.||++.|||-||||||||+|+|.++..|++
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~ 82 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR 82 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence 468999999887643211 0111 12233457899999999999999999999999999999999999999
Q ss_pred cEEEECCEeCCh-------h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 010509 106 GRITYNGKPFSN-------Q-MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKN 177 (508)
Q Consensus 106 G~I~~~G~~~~~-------~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 177 (508)
|+|+++|+++.+ + .++.+++|||+..|+|..||.||..|+...+ +.+++++++++.+.|+.+||+++++
T Consensus 83 G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~ 159 (386)
T COG4175 83 GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYAD 159 (386)
T ss_pred ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhh
Confidence 999999998843 2 3468999999999999999999999998765 5788999999999999999999998
Q ss_pred cccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhcc
Q 010509 178 SLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFH 256 (508)
Q Consensus 178 ~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D 256 (508)
+++ ++|||||||||.|||||+++|+||++|||+|.|||--+.++.+.|.+|.++ ++|||++|||++ +..++.|
T Consensus 160 ~yp-----~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~ 233 (386)
T COG4175 160 KYP-----NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGD 233 (386)
T ss_pred cCc-----ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccc
Confidence 776 599999999999999999999999999999999999999999999999765 899999999997 5779999
Q ss_pred EEEEEeCCeEEEEcChhhHH
Q 010509 257 KVLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 257 ~v~lL~~G~iv~~G~~~~~~ 276 (508)
||.+|++|+++-.|+|++++
T Consensus 234 rIaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 234 RIAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred eEEEecCCeEEEeCCHHHHH
Confidence 99999999999999999885
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-44 Score=357.19 Aligned_cols=217 Identities=23% Similarity=0.412 Sum_probs=185.1
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC--C---cccEEEEC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG--R---INGRITYN 111 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~--~---~~G~I~~~ 111 (508)
..++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++ | ++|+|.++
T Consensus 11 ~~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~ 77 (259)
T PRK14274 11 EVYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYN 77 (259)
T ss_pred ceEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEEC
Confidence 3699999999875 3569999999999999999999999999999999999886 3 59999999
Q ss_pred CEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccC
Q 010509 112 GKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE----CKNSLIG 181 (508)
Q Consensus 112 G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg 181 (508)
|+++.. ..++.++|++|++.+++. |++||+.+....+ ...++++..++++++++.+++.+ ..++.
T Consensus 78 g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~-- 152 (259)
T PRK14274 78 GSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIH--GTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQ-- 152 (259)
T ss_pred CEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhhhhhCC--
Confidence 998741 345679999999988885 9999998764332 11133445567888999999854 23333
Q ss_pred CCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 182 ~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||+++ .+.+.+||+++|
T Consensus 153 ---~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 227 (259)
T PRK14274 153 ---ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFF 227 (259)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEE
Confidence 458999999999999999999999999999999999999999999999975 799999999986 577899999999
Q ss_pred eCCeEEEEcChhhHH
Q 010509 262 SEGYPLYSGEASGAM 276 (508)
Q Consensus 262 ~~G~iv~~G~~~~~~ 276 (508)
++|+++..|+++++.
T Consensus 228 ~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 228 YMGELVECNDTNKMF 242 (259)
T ss_pred ECCEEEEECCHHHHh
Confidence 999999999988763
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=352.45 Aligned_cols=215 Identities=29% Similarity=0.462 Sum_probs=188.0
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
|+++|+++.+. + ++|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~-------------~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~ 66 (235)
T cd03299 1 LKVENLSKDWK-------------E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNL 66 (235)
T ss_pred CeeEeEEEEeC-------------C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcC
Confidence 45788888764 2 37999999999999999999999999999999999999999999999998753
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH
Q 010509 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 -~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 196 (508)
..++.++|++|++.+++.+|+.||+.+..... ..+..+..+.+.++++.+||.+..++.+ +.||||||||+
T Consensus 67 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 138 (235)
T cd03299 67 PPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRV 138 (235)
T ss_pred ChhHcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHH
Confidence 23568999999999999999999998764332 1234455567788999999988887766 48999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++. .+.+.+|++++|++|+++..|+.++.
T Consensus 139 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 217 (235)
T cd03299 139 AIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEEV 217 (235)
T ss_pred HHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999765 999999999986 57788999999999999999987765
Q ss_pred H
Q 010509 276 M 276 (508)
Q Consensus 276 ~ 276 (508)
.
T Consensus 218 ~ 218 (235)
T cd03299 218 F 218 (235)
T ss_pred H
Confidence 3
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-44 Score=354.90 Aligned_cols=220 Identities=20% Similarity=0.358 Sum_probs=185.1
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC--C---cccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG--R---INGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~--~---~~G~I~~~G 112 (508)
.++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++ | ++|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 489999999875 3569999999999999999999999999999999999975 3 689999999
Q ss_pred EeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 010509 113 KPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTR 186 (508)
Q Consensus 113 ~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 186 (508)
+++.. ..++.++|++|++.+++.+|+.||+.+..... ...+..+..++++++++.+|+.+...... +..++
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 147 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRL-KSNAM 147 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcC
Confidence 98742 34678999999999999999999998764322 11233344567889999999864211111 12345
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.++||++++|++|++
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i 225 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYMGDL 225 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999999976 589999999986 57789999999999999
Q ss_pred EEEcChhhH
Q 010509 267 LYSGEASGA 275 (508)
Q Consensus 267 v~~G~~~~~ 275 (508)
+..|++++.
T Consensus 226 ~~~~~~~~~ 234 (252)
T PRK14256 226 VECGETKKI 234 (252)
T ss_pred EEeCCHHHH
Confidence 999998765
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=392.03 Aligned_cols=219 Identities=21% Similarity=0.338 Sum_probs=191.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC--cccEEEECCEeC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR--INGRITYNGKPF 115 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~--~~G~I~~~G~~~ 115 (508)
+|+++|++++++ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++
T Consensus 5 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 599999999875 35799999999999999999999999999999999999875 899999999987
Q ss_pred Ch-----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 116 SN-----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 116 ~~-----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
.. ..++.++||+|++.+++.+||+||+.+....+.....+.++..++++++++.+|+.+..++.++ +|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVG-----NLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchh-----hCCH
Confidence 43 1246799999999999999999999886532211112334455678999999999888887765 8999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||++ .+..+||++++|++|++++.|
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~G~i~~~~ 225 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRDGRHIGTR 225 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEECCEEeeec
Confidence 9999999999999999999999999999999999999999999878999999999986 577889999999999999999
Q ss_pred ChhhH
Q 010509 271 EASGA 275 (508)
Q Consensus 271 ~~~~~ 275 (508)
++++.
T Consensus 226 ~~~~~ 230 (506)
T PRK13549 226 PAAGM 230 (506)
T ss_pred ccccC
Confidence 98764
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-44 Score=354.56 Aligned_cols=216 Identities=23% Similarity=0.362 Sum_probs=184.9
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-----cccEEEEC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-----INGRITYN 111 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-----~~G~I~~~ 111 (508)
..++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++|+|.++
T Consensus 3 ~~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~ 69 (251)
T PRK14270 3 IKMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLD 69 (251)
T ss_pred cEEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEEC
Confidence 3689999999875 35699999999999999999999999999999999998764 79999999
Q ss_pred CEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccC
Q 010509 112 GKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE----CKNSLIG 181 (508)
Q Consensus 112 G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg 181 (508)
|+++.. ..++.++|++|++.+++ +|++||+.+...... .....+..++++++++.+|+.+ ..++.
T Consensus 70 g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 144 (251)
T PRK14270 70 GKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKKS-- 144 (251)
T ss_pred CEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhCC--
Confidence 998742 23567999999999887 899999988654321 1123444567788999998853 33433
Q ss_pred CCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 182 ~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++||+++|
T Consensus 145 ---~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l 219 (251)
T PRK14270 145 ---ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFF 219 (251)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEE
Confidence 458999999999999999999999999999999999999999999999976 589999999986 577889999999
Q ss_pred eCCeEEEEcChhhH
Q 010509 262 SEGYPLYSGEASGA 275 (508)
Q Consensus 262 ~~G~iv~~G~~~~~ 275 (508)
++|++++.|+++++
T Consensus 220 ~~G~i~~~~~~~~~ 233 (251)
T PRK14270 220 LMGDLIEFNKTEKI 233 (251)
T ss_pred ECCeEEEeCCHHHH
Confidence 99999999998876
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-44 Score=356.63 Aligned_cols=223 Identities=22% Similarity=0.339 Sum_probs=187.8
Q ss_pred CceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEE
Q 010509 35 HPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRIT 109 (508)
Q Consensus 35 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~ 109 (508)
.+..++++|++++++ ++++|+|+|+++++||+++|+|||||||||||++|+|+++ |++|+|.
T Consensus 17 ~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 83 (267)
T PRK14237 17 EEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL 83 (267)
T ss_pred CCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEE
Confidence 345799999999874 3579999999999999999999999999999999999985 5899999
Q ss_pred ECCEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCC
Q 010509 110 YNGKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGP 183 (508)
Q Consensus 110 ~~G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 183 (508)
++|+++.. ..++.++|++|++.+++ .||+||+.++.... ....+++..+++.++++.++|.+..+... +.
T Consensus 84 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~ 159 (267)
T PRK14237 84 YRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDL-HK 159 (267)
T ss_pred ECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhh-cC
Confidence 99998742 24667999999998887 59999998865321 11234445567888999999964322222 23
Q ss_pred CCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 184 LTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 184 ~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
.+++||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.++||++++|++
T Consensus 160 ~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~ 237 (267)
T PRK14237 160 SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARASDYTAFFYL 237 (267)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhcCEEEEEEC
Confidence 4569999999999999999999999999999999999999999999999964 799999999986 57789999999999
Q ss_pred CeEEEEcChhhHH
Q 010509 264 GYPLYSGEASGAM 276 (508)
Q Consensus 264 G~iv~~G~~~~~~ 276 (508)
|+++..|++++..
T Consensus 238 G~i~~~g~~~~~~ 250 (267)
T PRK14237 238 GDLIEYDKTRNIF 250 (267)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988763
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-44 Score=360.59 Aligned_cols=218 Identities=24% Similarity=0.392 Sum_probs=185.8
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCc--------ccEEEE
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI--------NGRITY 110 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~--------~G~I~~ 110 (508)
|+++|++++++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 78999999874 357999999999999999999999999999999999999887 999999
Q ss_pred CCEeCCh----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 010509 111 NGKPFSN----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP-NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT 185 (508)
Q Consensus 111 ~G~~~~~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 185 (508)
+|+++.. ..++.++|++|++.+++.+|++||+.+....... .....++..++++++++.+||.+..++.+
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV----- 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc-----
Confidence 9998742 3455789999998766679999999875321100 01111234466889999999988777655
Q ss_pred CccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhc
Q 010509 186 RGVSGGERKRVSIGQEIL---------INPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMF 255 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~---------~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~ 255 (508)
..|||||||||+||++|+ .+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+++
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 489999999999999999 599999999999999999999999999999875 899999999986 577889
Q ss_pred cEEEEEeCCeEEEEcChhhH
Q 010509 256 HKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 256 D~v~lL~~G~iv~~G~~~~~ 275 (508)
|++++|++|++++.|+++++
T Consensus 223 d~i~~l~~G~i~~~g~~~~~ 242 (272)
T PRK13547 223 DRIAMLADGAIVAHGAPADV 242 (272)
T ss_pred CEEEEEECCeEEEecCHHHH
Confidence 99999999999999998765
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-44 Score=358.55 Aligned_cols=217 Identities=24% Similarity=0.421 Sum_probs=184.0
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEE
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITY 110 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~ 110 (508)
+.+|+++|++++++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+
T Consensus 11 ~~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~ 77 (269)
T PRK14259 11 NIIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLF 77 (269)
T ss_pred CceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEE
Confidence 45799999999875 3569999999999999999999999999999999999976 68999999
Q ss_pred CCEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccc
Q 010509 111 NGKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE----CKNSLI 180 (508)
Q Consensus 111 ~G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v 180 (508)
+|+++.. ..++.++|++|++.+++. ||+||+.+.+..+ .... +..++++++++.+++.. ..++.
T Consensus 78 ~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~- 151 (269)
T PRK14259 78 DGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARIN---GYTG-DMDELVERSLRKAAVWDECKDKLNES- 151 (269)
T ss_pred CCEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhc---CCcH-HHHHHHHHHHHHhCCcchhhhhhCCC-
Confidence 9998631 345679999999998884 9999998876432 1122 23456778889888743 33433
Q ss_pred CCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEE
Q 010509 181 GGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLL 260 (508)
Q Consensus 181 g~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~l 260 (508)
+++||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+..+||++++
T Consensus 152 ----~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~ 225 (269)
T PRK14259 152 ----GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAF 225 (269)
T ss_pred ----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEE
Confidence 458999999999999999999999999999999999999999999999965 799999999986 57899999999
Q ss_pred EeC-----------CeEEEEcChhhHHH
Q 010509 261 LSE-----------GYPLYSGEASGAMN 277 (508)
Q Consensus 261 L~~-----------G~iv~~G~~~~~~~ 277 (508)
|++ |++++.|+++++..
T Consensus 226 l~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 226 FNAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred EeccccccccccccceEEEeCCHHHHHh
Confidence 996 67899999887753
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=390.18 Aligned_cols=219 Identities=25% Similarity=0.390 Sum_probs=191.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|++++++ ++++|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~ 70 (501)
T PRK10762 4 LLQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTF 70 (501)
T ss_pred eEEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC
Confidence 589999999875 3579999999999999999999999999999999999999999999999998742
Q ss_pred ----h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 118 ----Q-MTRNTGFVTQEDVLSPYLTVTETMVFTALLQL-PNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 118 ----~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
. .++.++|++|++.+++.+||+||+.++...+. ....+.++.+++++++++.+||.+..++.++ +||||
T Consensus 71 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 145 (501)
T PRK10762 71 NGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG-----ELSIG 145 (501)
T ss_pred CCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCCHH
Confidence 1 24579999999999999999999988643211 0112334455678899999999988877765 89999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
|||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||++ .+..+||++++|++|+++..|+
T Consensus 146 ~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~G~i~~~~~ 224 (501)
T PRK10762 146 EQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRDGQFIAERE 224 (501)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEecC
Confidence 999999999999999999999999999999999999999999877999999999986 5778999999999999999998
Q ss_pred hhhH
Q 010509 272 ASGA 275 (508)
Q Consensus 272 ~~~~ 275 (508)
+++.
T Consensus 225 ~~~~ 228 (501)
T PRK10762 225 VADL 228 (501)
T ss_pred cCcC
Confidence 8754
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=390.90 Aligned_cols=219 Identities=23% Similarity=0.343 Sum_probs=191.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++|++++++ ++.+|+|+||++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~ 71 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNK 71 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCC
Confidence 699999999875 3579999999999999999999999999999999999999999999999998743
Q ss_pred -----hccccEEEEecCCCCCCCCCHHHHHHHHHHhc--CCC--CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCcc
Q 010509 118 -----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQ--LPN--SFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGV 188 (508)
Q Consensus 118 -----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~--~~~--~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 188 (508)
..++.++||+|++.+++.+||+||+.+..... ... ..+.++.+++++++++.+||.+..++.++ +|
T Consensus 72 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~L 146 (510)
T PRK09700 72 LDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA-----NL 146 (510)
T ss_pred CCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchh-----hC
Confidence 12357999999999999999999998753210 000 01234455678999999999988887765 89
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEE
Q 010509 189 SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLY 268 (508)
Q Consensus 189 SGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~ 268 (508)
||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||++ .+..+||++++|++|++++
T Consensus 147 SgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~G~i~~ 225 (510)
T PRK09700 147 SISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKDGSSVC 225 (510)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEee
Confidence 999999999999999999999999999999999999999999999888999999999986 5778999999999999999
Q ss_pred EcChhhH
Q 010509 269 SGEASGA 275 (508)
Q Consensus 269 ~G~~~~~ 275 (508)
.|++++.
T Consensus 226 ~g~~~~~ 232 (510)
T PRK09700 226 SGMVSDV 232 (510)
T ss_pred ecchhhC
Confidence 9998764
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-44 Score=352.83 Aligned_cols=218 Identities=26% Similarity=0.395 Sum_probs=184.6
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCc-----ccEEEEC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI-----NGRITYN 111 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~-----~G~I~~~ 111 (508)
+.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|. +|+|.++
T Consensus 3 ~~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~ 69 (252)
T PRK14272 3 LLLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLD 69 (252)
T ss_pred EEEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEEC
Confidence 4689999999875 357999999999999999999999999999999999998653 8999999
Q ss_pred CEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----cccccccC
Q 010509 112 GKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS----ECKNSLIG 181 (508)
Q Consensus 112 G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg 181 (508)
|+++.. ..++.++|++|++.+++.+|+.||+.+..... ....+++..++++++++.+++. +..++.
T Consensus 70 g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 145 (252)
T PRK14272 70 GQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLA--GIRDRDHLMEVAERSLRGAALWDEVKDRLKTP-- 145 (252)
T ss_pred CEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCcchhhhhhhcCC--
Confidence 998742 34567999999999999999999998765322 1112334456677778888764 333444
Q ss_pred CCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 182 ~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+...+|++++|
T Consensus 146 ---~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l 220 (252)
T PRK14272 146 ---ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFF 220 (252)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEE
Confidence 458999999999999999999999999999999999999999999999975 699999999986 577889999999
Q ss_pred eCCeEEEEcChhhHH
Q 010509 262 SEGYPLYSGEASGAM 276 (508)
Q Consensus 262 ~~G~iv~~G~~~~~~ 276 (508)
++|++++.|++++..
T Consensus 221 ~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 221 LVGDLVEHGPTDQLF 235 (252)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988763
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-44 Score=355.22 Aligned_cols=218 Identities=24% Similarity=0.396 Sum_probs=185.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEe---
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP--- 114 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~--- 114 (508)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|++
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 72 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQL 72 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccc
Confidence 599999999875 3569999999999999999999999999999999999999999999999987
Q ss_pred --CCh----h----ccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccC
Q 010509 115 --FSN----Q----MTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIG 181 (508)
Q Consensus 115 --~~~----~----~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg 181 (508)
+.. . .++.++|++|++ .+++.+|+.||+.+..... . .....+.++++.++++.+++.+ ..++.+
T Consensus 73 ~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~- 149 (258)
T PRK11701 73 RDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAV-G-ARHYGDIRATAGDWLERVEIDAARIDDLP- 149 (258)
T ss_pred cccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHh-c-cCcHHHHHHHHHHHHHHcCCChhHHhCCC-
Confidence 532 1 245699999997 3677889999997643221 1 1122344567889999999974 556555
Q ss_pred CCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEE
Q 010509 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLL 260 (508)
Q Consensus 182 ~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~l 260 (508)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||++. .+.+.+|++++
T Consensus 150 ----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~ 224 (258)
T PRK11701 150 ----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLV 224 (258)
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEE
Confidence 489999999999999999999999999999999999999999999999765 899999999986 57778999999
Q ss_pred EeCCeEEEEcChhhHH
Q 010509 261 LSEGYPLYSGEASGAM 276 (508)
Q Consensus 261 L~~G~iv~~G~~~~~~ 276 (508)
|++|++++.|++++..
T Consensus 225 l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 225 MKQGRVVESGLTDQVL 240 (258)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999987653
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-44 Score=356.34 Aligned_cols=216 Identities=22% Similarity=0.368 Sum_probs=182.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~~G 112 (508)
.++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 699999999875 3579999999999999999999999999999999999753 6899999999
Q ss_pred EeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCC
Q 010509 113 KPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE----CKNSLIGG 182 (508)
Q Consensus 113 ~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~ 182 (508)
+++.. ..++.++|++|++.+++. |++||+.+..... ........++.++++++.+++.+ ..++.
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYA--GERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 98742 245679999999988885 9999998764322 11122233456788899998852 33444
Q ss_pred CCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 183 PLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 183 ~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++||+++|+
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 458999999999999999999999999999999999999999999999975 689999999986 5778999999999
Q ss_pred CCeEEEEcChhhHH
Q 010509 263 EGYPLYSGEASGAM 276 (508)
Q Consensus 263 ~G~iv~~G~~~~~~ 276 (508)
+|++++.|++++..
T Consensus 238 ~G~i~~~~~~~~~~ 251 (268)
T PRK14248 238 NGDLVEYDQTEQIF 251 (268)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999987653
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-44 Score=352.12 Aligned_cols=221 Identities=24% Similarity=0.410 Sum_probs=185.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-----cccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-----INGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-----~~G~I~~~G 112 (508)
+|+++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g 69 (250)
T PRK14262 3 IIEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKG 69 (250)
T ss_pred eEEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 589999999874 35699999999999999999999999999999999999863 899999999
Q ss_pred EeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 010509 113 KPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTR 186 (508)
Q Consensus 113 ~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 186 (508)
+++.. ..++.++|++|++.+++ .|++||+.+...... ...++..++.++++++.+|+.+..+... +..++
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 145 (250)
T PRK14262 70 QDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSEL-NKPGT 145 (250)
T ss_pred EEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHH-hCChh
Confidence 98742 24568999999999888 899999988654321 1123344556788999999864211111 23345
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+..++|++++|++|++
T Consensus 146 ~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~G~i 223 (250)
T PRK14262 146 RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYRGEL 223 (250)
T ss_pred hcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999975 789999999986 47788999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
+..|++++..+
T Consensus 224 ~~~g~~~~~~~ 234 (250)
T PRK14262 224 IEYGPTREIVE 234 (250)
T ss_pred EEecCHHHHHh
Confidence 99999887643
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-44 Score=352.43 Aligned_cols=215 Identities=25% Similarity=0.388 Sum_probs=182.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC--CC---cccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL--GR---INGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~--~~---~~G~I~~~G 112 (508)
.++++|+++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|+. .| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 589999999875 356999999999999999999999999999999999985 35 599999999
Q ss_pred EeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCC
Q 010509 113 KPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE----CKNSLIGG 182 (508)
Q Consensus 113 ~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~ 182 (508)
+++.. ..++.++|++|++.+++ +||+||+.+....+ + ....+...++++++++.+++.+ ..++.
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLK-G-IKDKQVLDEAVEKSLKGASIWDEVKDRLHDS--- 145 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHHcCCchhHHHHHhcC---
Confidence 98731 24567999999998887 89999998865432 1 1123334566788999998853 23333
Q ss_pred CCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 183 PLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 183 ~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
+++||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+||+++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14239 146 --ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEE
Confidence 458999999999999999999999999999999999999999999999965 689999999986 5778899999999
Q ss_pred CCeEEEEcChhhH
Q 010509 263 EGYPLYSGEASGA 275 (508)
Q Consensus 263 ~G~iv~~G~~~~~ 275 (508)
+|++++.|++++.
T Consensus 222 ~G~i~~~g~~~~~ 234 (252)
T PRK14239 222 DGDLIEYNDTKQM 234 (252)
T ss_pred CCEEEEeCCHHHH
Confidence 9999999998876
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-44 Score=351.85 Aligned_cols=215 Identities=23% Similarity=0.378 Sum_probs=183.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC--C---cccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG--R---INGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~--~---~~G~I~~~G 112 (508)
.|+++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+ | ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 488999999875 3569999999999999999999999999999999999875 3 699999999
Q ss_pred EeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCC
Q 010509 113 KPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE----CKNSLIGG 182 (508)
Q Consensus 113 ~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~ 182 (508)
+++.. ..++.++|++|++.+++ +|++||+.+....+. ..+.++.+++++++++.+++.+ ..++.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 143 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKS--- 143 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcC---
Confidence 98742 34667999999998888 899999998654321 1123445567888899998753 33443
Q ss_pred CCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 183 PLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 183 ~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
+++||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|++++|+
T Consensus 144 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14240 144 --ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFL 219 (250)
T ss_pred --CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEE
Confidence 458999999999999999999999999999999999999999999999965 799999999986 5778899999999
Q ss_pred CCeEEEEcChhhH
Q 010509 263 EGYPLYSGEASGA 275 (508)
Q Consensus 263 ~G~iv~~G~~~~~ 275 (508)
+|+++..|++++.
T Consensus 220 ~G~i~~~~~~~~~ 232 (250)
T PRK14240 220 NGEIVEFGDTVDL 232 (250)
T ss_pred CCEEEEeCCHHHH
Confidence 9999999988765
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-44 Score=352.90 Aligned_cols=220 Identities=22% Similarity=0.342 Sum_probs=182.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~~G 112 (508)
.-+++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+ |++|+|.++|
T Consensus 5 ~~~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 71 (251)
T PRK14244 5 HASVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDG 71 (251)
T ss_pred EEEeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECC
Confidence 356789988764 3579999999999999999999999999999999999975 4799999999
Q ss_pred EeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 010509 113 KPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTR 186 (508)
Q Consensus 113 ~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 186 (508)
+++.. ..++.++|++|++.+++. |++||+.+....+. .....++.++.++++++.+||.+...+.. +..++
T Consensus 72 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 148 (251)
T PRK14244 72 IDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRL-KDSAF 148 (251)
T ss_pred EehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHh-hcChh
Confidence 98632 246689999999988886 99999987643321 11123344566788999999975321111 12345
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||++||+++ .+.+.+|++++|++|++
T Consensus 149 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i 226 (251)
T PRK14244 149 ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMK-QAKKVSDRVAFFQSGRI 226 (251)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhcCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999999964 899999999986 57788999999999999
Q ss_pred EEEcChhhH
Q 010509 267 LYSGEASGA 275 (508)
Q Consensus 267 v~~G~~~~~ 275 (508)
++.|+++++
T Consensus 227 ~~~~~~~~~ 235 (251)
T PRK14244 227 VEYNTTQEI 235 (251)
T ss_pred EEeCCHHHH
Confidence 999988765
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-44 Score=345.62 Aligned_cols=190 Identities=29% Similarity=0.470 Sum_probs=168.4
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--------hccccEEEEecCCCCCCCCCHHH
Q 010509 69 GITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--------QMTRNTGFVTQEDVLSPYLTVTE 140 (508)
Q Consensus 69 ~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--------~~~~~i~yv~Q~~~l~~~lTv~E 140 (508)
|+|+++++ |+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..++.++|++|++.+++.+|++|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 94 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRE 94 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHH
Confidence 99999999 9999999999999999999999999999999999988641 23567999999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 010509 141 TMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDS 220 (508)
Q Consensus 141 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~ 220 (508)
|+.+..... .....+++++++++.+|+.+..++.+ ++||||||||++||++|+.+|++++|||||+|||+
T Consensus 95 ~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~ 164 (214)
T cd03297 95 NLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELLLLDEPFSALDR 164 (214)
T ss_pred HHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 998764321 23334567889999999987777655 48999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 221 TIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 221 ~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
.++..+.+.|++++++ |+|||++||+++ .+.+.+|++++|++|+++..|
T Consensus 165 ~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 165 ALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999875 899999999986 477889999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-44 Score=387.74 Aligned_cols=212 Identities=25% Similarity=0.387 Sum_probs=189.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++|++++++ ++.+|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 77 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCAR 77 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCC
Confidence 699999999875 3569999999999999999999999999999999999999999999999998743
Q ss_pred ----h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 ----Q-MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 ----~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
. .++.++|++|++.+++.+||+||+.+... ...+.+++++++++.+||.+..++.++ +|||||
T Consensus 78 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~-------~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~ 145 (510)
T PRK15439 78 LTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP-------KRQASMQKMKQLLAALGCQLDLDSSAG-----SLEVAD 145 (510)
T ss_pred CCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc-------cchHHHHHHHHHHHHcCCCccccCChh-----hCCHHH
Confidence 1 23469999999999999999999987531 112344678899999999988877765 899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||++ .+.++||++++|++|++++.|++
T Consensus 146 ~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~ 224 (510)
T PRK15439 146 RQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRDGTIALSGKT 224 (510)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCh
Confidence 99999999999999999999999999999999999999999888999999999986 57789999999999999999998
Q ss_pred hhH
Q 010509 273 SGA 275 (508)
Q Consensus 273 ~~~ 275 (508)
++.
T Consensus 225 ~~~ 227 (510)
T PRK15439 225 ADL 227 (510)
T ss_pred HHc
Confidence 765
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-44 Score=350.95 Aligned_cols=201 Identities=28% Similarity=0.491 Sum_probs=174.7
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHH
Q 010509 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTA 146 (508)
Q Consensus 67 L~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~ 146 (508)
|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ....+|++|++.+++.+||.||+.+..
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~v~q~~~l~~~~tv~e~l~~~~ 79 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEP-GPDRMVVFQNYSLLPWLTVRENIALAV 79 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC-ChhheEEecCcccCCCCCHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999987532 123589999999999999999998864
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 010509 147 LLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQI 226 (508)
Q Consensus 147 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i 226 (508)
....+ ...+++.+++++++++.+||.+..++.++ +||||||||++||++|+.+|++|+|||||+|||+.++..+
T Consensus 80 ~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l 153 (230)
T TIGR01184 80 DRVLP-DLSKSERRAIVEEHIALVGLTEAADKRPG-----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNL 153 (230)
T ss_pred Hhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHH
Confidence 21111 23344556678899999999887777664 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 227 LSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 227 ~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
.+.|++++++ |+|||++||+++ .+.+++|++++|++|+++..|+..++
T Consensus 154 ~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 154 QEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCceec
Confidence 9999999764 899999999986 57789999999999999998876543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=350.29 Aligned_cols=215 Identities=23% Similarity=0.403 Sum_probs=182.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~~G 112 (508)
.++++|++++++ .+++|+|+|+++++||+++|+||||||||||+++|+|+.+ +++|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 589999999875 3569999999999999999999999999999999999986 4799999999
Q ss_pred EeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCC
Q 010509 113 KPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE----CKNSLIGG 182 (508)
Q Consensus 113 ~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~ 182 (508)
+++.. ..++.++|++|++.+++ .||+||+.+..... ....++...++++++++.+++.. ..++.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIA--GVKDKELIDQRVEESLKQAAIWKETKDNLDRN--- 144 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCCcchHHHhccC---
Confidence 98632 24567999999998886 79999998764322 11122334456788999999852 23433
Q ss_pred CCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 183 PLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 183 ~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.+++|++++|+
T Consensus 145 --~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14251 145 --AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLM 220 (251)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 458999999999999999999999999999999999999999999999965 699999999986 5778899999999
Q ss_pred CCeEEEEcChhhH
Q 010509 263 EGYPLYSGEASGA 275 (508)
Q Consensus 263 ~G~iv~~G~~~~~ 275 (508)
+|+++..|++++.
T Consensus 221 ~G~i~~~~~~~~~ 233 (251)
T PRK14251 221 NGDLIEAGPTEEM 233 (251)
T ss_pred CCEEEEeCCHHHH
Confidence 9999999998765
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=351.23 Aligned_cols=215 Identities=22% Similarity=0.347 Sum_probs=182.9
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC----cccEEEECC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR----INGRITYNG 112 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~----~~G~I~~~G 112 (508)
..|+++|++++++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++|+|.++|
T Consensus 3 ~~l~~~~l~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g 68 (254)
T PRK10418 3 QQIELRNIALQAA--------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG 68 (254)
T ss_pred cEEEEeCeEEEec--------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECC
Confidence 4689999999862 3589999999999999999999999999999999999988 999999999
Q ss_pred EeCCh-h-ccccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc---ccccccCCCCC
Q 010509 113 KPFSN-Q-MTRNTGFVTQEDV--LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE---CKNSLIGGPLT 185 (508)
Q Consensus 113 ~~~~~-~-~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~vg~~~~ 185 (508)
+++.. . .++.++|++|++. +.+.+|+.+++.+.+... .... ..++++++++.+||.+ ..++.+
T Consensus 69 ~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~----- 138 (254)
T PRK10418 69 KPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL---GKPA--DDATLTAALEAVGLENAARVLKLYP----- 138 (254)
T ss_pred eeccccccccceEEEEecCCccccCccccHHHHHHHHHHHc---CCCh--HHHHHHHHHHHcCCCChhhhhhcCC-----
Confidence 98753 2 2357999999974 556789999987654321 1112 2256889999999976 345444
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
++||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|++++|++|
T Consensus 139 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~G 217 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSHG 217 (254)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEECC
Confidence 589999999999999999999999999999999999999999999999764 899999999986 467889999999999
Q ss_pred eEEEEcChhhHH
Q 010509 265 YPLYSGEASGAM 276 (508)
Q Consensus 265 ~iv~~G~~~~~~ 276 (508)
+++..|++++..
T Consensus 218 ~i~~~~~~~~~~ 229 (254)
T PRK10418 218 RIVEQGDVETLF 229 (254)
T ss_pred EEEEecCHHHHh
Confidence 999999987763
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=349.24 Aligned_cols=220 Identities=25% Similarity=0.376 Sum_probs=184.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC--CCCcccEEEECCEeC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGR--LGRINGRITYNGKPF 115 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~--~~~~~G~I~~~G~~~ 115 (508)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|+ .+|++|+|.++|+++
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 699999999874 34699999999999999999999999999999999998 478999999999987
Q ss_pred Ch----hccc-cEEEEecCCCCCCCCCHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 010509 116 SN----QMTR-NTGFVTQEDVLSPYLTVTETMVFTALLQLP----NSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLT 185 (508)
Q Consensus 116 ~~----~~~~-~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~----~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~ 185 (508)
.. ..++ .++|++|++.+++.+|+.|++.+....... ......+..++++++++.+|+. +..++.++
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 43 1222 488999999999999999999875432110 0112223446778899999997 35555543
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhh-ccEEEEEeCC
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYM-FHKVLLLSEG 264 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~-~D~v~lL~~G 264 (508)
.+|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++. +... +|++++|++|
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i~~l~~G 228 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYVHVMQNG 228 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEEEEEeCC
Confidence 2599999999999999999999999999999999999999999999998779999999999864 5555 8999999999
Q ss_pred eEEEEcChhhH
Q 010509 265 YPLYSGEASGA 275 (508)
Q Consensus 265 ~iv~~G~~~~~ 275 (508)
++++.|+++.+
T Consensus 229 ~i~~~~~~~~~ 239 (252)
T CHL00131 229 KIIKTGDAELA 239 (252)
T ss_pred EEEEecChhhh
Confidence 99999998843
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=352.86 Aligned_cols=214 Identities=27% Similarity=0.483 Sum_probs=173.7
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~ 69 (237)
T cd03252 1 ITFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALA 69 (237)
T ss_pred CEEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhc
Confidence 467899988641 12569999999999999999999999999999999999999999999999998642
Q ss_pred ---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHH-----HHHHHHHHHc--CCCcccccccCCCCCCc
Q 010509 118 ---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKI-----KCAEAVMTEL--GLSECKNSLIGGPLTRG 187 (508)
Q Consensus 118 ---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~ 187 (508)
..++.++|++|++.+++ .||.||+.+... ........ ...+++++.+ ++.+..++. +++
T Consensus 70 ~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~~ 138 (237)
T cd03252 70 DPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-----GAG 138 (237)
T ss_pred CHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC-----CCc
Confidence 34667999999998875 699999976431 11111111 1123344444 444444433 458
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||+++. + ..+|++++|++|+++
T Consensus 139 LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~ 215 (237)
T cd03252 139 LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLST-V-KNADRIIVMEKGRIV 215 (237)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-HhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999974 8999999999974 5 459999999999999
Q ss_pred EEcChhhHHH
Q 010509 268 YSGEASGAMN 277 (508)
Q Consensus 268 ~~G~~~~~~~ 277 (508)
+.|++++..+
T Consensus 216 ~~~~~~~~~~ 225 (237)
T cd03252 216 EQGSHDELLA 225 (237)
T ss_pred EEcCHHHHHh
Confidence 9999877643
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=349.53 Aligned_cols=219 Identities=24% Similarity=0.370 Sum_probs=183.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-----cccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-----INGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-----~~G~I~~~G 112 (508)
+++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 588999999875 35699999999999999999999999999999999999875 599999999
Q ss_pred EeCCh-----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCc
Q 010509 113 KPFSN-----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRG 187 (508)
Q Consensus 113 ~~~~~-----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 187 (508)
.++.. ..++.++|++|++.+++ .||.||+.+..... ...+++...+++.++++.+++.+...... +..+.+
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDRL-KSHAFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCchhhhHHh-hcCccc
Confidence 88731 34667999999999887 89999998764322 11123344566788899888854221111 123458
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.+|++++|++|+++
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~G~i~ 223 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLMGELV 223 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999976 589999999986 577899999999999999
Q ss_pred EEcChhhH
Q 010509 268 YSGEASGA 275 (508)
Q Consensus 268 ~~G~~~~~ 275 (508)
..|++++.
T Consensus 224 ~~g~~~~~ 231 (249)
T PRK14253 224 EHDDTQVI 231 (249)
T ss_pred EeCCHHHH
Confidence 99988765
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=340.57 Aligned_cols=193 Identities=40% Similarity=0.645 Sum_probs=166.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC---CcccEEEECCEe
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG---RINGRITYNGKP 114 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~---~~~G~I~~~G~~ 114 (508)
.+.|+|++|.++.. .+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.++|++
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 58999999998732 135679999999999999999999999999999999999987 899999999998
Q ss_pred CCh---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 115 FSN---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 115 ~~~---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
+.. ..++.++|++|++.+++.+||+||+.+..... .++. +..||||
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 753 35668999999999999999999998753210 2233 3589999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ +.|+|+++|+..+.+.+.+|++++|++|++++.|
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999999765 6777777666545678899999999999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-44 Score=341.85 Aligned_cols=197 Identities=30% Similarity=0.475 Sum_probs=171.4
Q ss_pred EeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC---h-
Q 010509 42 EDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS---N- 117 (508)
Q Consensus 42 ~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~---~- 117 (508)
+|+++.++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .
T Consensus 2 ~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~ 68 (206)
T TIGR03608 2 KNISKKFG-------------DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSK 68 (206)
T ss_pred cceEEEEC-------------CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchh
Confidence 57777654 357999999999999999999999999999999999999999999999999853 1
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
..++.++|++|++.+++.+|++||+.+..... ...+.+..++++++++.+||.+..++.+. +||||||
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~ 140 (206)
T TIGR03608 69 KASKFRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKIY-----ELSGGEQ 140 (206)
T ss_pred hHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCChh-----hCCHHHH
Confidence 23568999999999999999999999865432 22344556678999999999887777664 8999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||++. .. ..+|++++|
T Consensus 141 qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~i~~l 206 (206)
T TIGR03608 141 QRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE-VA-KQADRVIEL 206 (206)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEeC
Confidence 9999999999999999999999999999999999999999877999999999986 34 679999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=352.74 Aligned_cols=220 Identities=26% Similarity=0.381 Sum_probs=184.7
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEEC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITYN 111 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~~ 111 (508)
..++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+ |++|+|.++
T Consensus 24 ~~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~ 90 (272)
T PRK14236 24 TALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLD 90 (272)
T ss_pred cEEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEEC
Confidence 3699999999875 3569999999999999999999999999999999999976 489999999
Q ss_pred CEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 010509 112 GKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT 185 (508)
Q Consensus 112 G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 185 (508)
|+++.. ..++.++|++|++.+++. |++||+.+..... ....+++.+++++++++.+++.+...+.. +..+
T Consensus 91 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~ 166 (272)
T PRK14236 91 GQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQ--GINNRRVLDEAVERSLRGAALWDEVKDRL-HENA 166 (272)
T ss_pred CEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCChhHHHHh-hCCc
Confidence 998742 346789999999998886 9999998765432 11123334466888999999864211111 1234
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
++||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.+.+|++++|++|+
T Consensus 167 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~ 244 (272)
T PRK14236 167 FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYMGK 244 (272)
T ss_pred ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEECCE
Confidence 58999999999999999999999999999999999999999999999976 789999999986 5778899999999999
Q ss_pred EEEEcChhhH
Q 010509 266 PLYSGEASGA 275 (508)
Q Consensus 266 iv~~G~~~~~ 275 (508)
++..|++++.
T Consensus 245 i~~~g~~~~~ 254 (272)
T PRK14236 245 LVEYGDTDTL 254 (272)
T ss_pred EEecCCHHHH
Confidence 9999988765
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=376.18 Aligned_cols=227 Identities=25% Similarity=0.400 Sum_probs=199.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCc----ccEEEECCE
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI----NGRITYNGK 113 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~----~G~I~~~G~ 113 (508)
.|+++||++.+.... +...+++||||++++||++||+|.|||||||+.++|.|++++. +|+|.++|+
T Consensus 5 lL~V~nL~v~~~~~~---------~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~ 75 (539)
T COG1123 5 LLEVENLTVEFATDG---------GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75 (539)
T ss_pred eEEEeceEEEEecCC---------cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCc
Confidence 699999999987431 1357999999999999999999999999999999999998644 899999999
Q ss_pred eCCh--------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCC
Q 010509 114 PFSN--------QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGP 183 (508)
Q Consensus 114 ~~~~--------~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 183 (508)
++.. ...+.|+||||++ .+.|.+|+.+.+.-....+. ..+.++.++++.++|+.+||.+.... +.
T Consensus 76 dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~--~~~~~ea~~~a~elL~~Vgl~~~~~~---~~ 150 (539)
T COG1123 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG--KGSRAEARKRAVELLEQVGLPDPERR---DR 150 (539)
T ss_pred chhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHcCCCChhhh---cc
Confidence 7632 1246899999997 47888999999987766553 23478888999999999999987655 56
Q ss_pred CCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 184 LTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 184 ~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
+|++|||||||||.||+||+.+|++|++||||++||+.++.+|+++|+++.+ .|.++|++|||+. .+.++||||++|+
T Consensus 151 yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~ 229 (539)
T COG1123 151 YPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMY 229 (539)
T ss_pred CCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEE
Confidence 8899999999999999999999999999999999999999999999999985 5999999999996 7889999999999
Q ss_pred CCeEEEEcChhhHHHHH
Q 010509 263 EGYPLYSGEASGAMNYF 279 (508)
Q Consensus 263 ~G~iv~~G~~~~~~~~f 279 (508)
+|++++.|+++++++-+
T Consensus 230 ~G~iVE~G~~~~i~~~p 246 (539)
T COG1123 230 KGEIVETGPTEEILSNP 246 (539)
T ss_pred CCEEEEecCHHHHHhcc
Confidence 99999999999987644
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=353.33 Aligned_cols=216 Identities=22% Similarity=0.383 Sum_probs=181.9
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEEC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITYN 111 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~~ 111 (508)
..++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|+++ |++|+|.++
T Consensus 23 ~~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~ 89 (271)
T PRK14238 23 VVFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYR 89 (271)
T ss_pred eEEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEEC
Confidence 4699999999875 3469999999999999999999999999999999999986 699999999
Q ss_pred CEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----cccccccC
Q 010509 112 GKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS----ECKNSLIG 181 (508)
Q Consensus 112 G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg 181 (508)
|+++.. ..++.++|++|++.+++ .|++||+.+....+ ...+++..++.+.++++.+++. +..++
T Consensus 90 g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~--- 163 (271)
T PRK14238 90 DQNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIH--GIKDKKTLDEIVEKSLRGAAIWDELKDRLHD--- 163 (271)
T ss_pred CEEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCcchHHHHHhc---
Confidence 998731 34668999999998887 49999998865432 1112223345567778877653 33333
Q ss_pred CCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 182 ~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
.+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++|++++|
T Consensus 164 --~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l 239 (271)
T PRK14238 164 --NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFF 239 (271)
T ss_pred --CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEE
Confidence 3458999999999999999999999999999999999999999999999976 799999999986 577889999999
Q ss_pred eCCeEEEEcChhhH
Q 010509 262 SEGYPLYSGEASGA 275 (508)
Q Consensus 262 ~~G~iv~~G~~~~~ 275 (508)
++|+++..|++++.
T Consensus 240 ~~G~i~~~g~~~~~ 253 (271)
T PRK14238 240 LNGYVNEYDDTDKI 253 (271)
T ss_pred ECCEEEEeCCHHHH
Confidence 99999999998765
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=348.78 Aligned_cols=219 Identities=21% Similarity=0.330 Sum_probs=182.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCc-----ccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI-----NGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~-----~G~I~~~G 112 (508)
.++++|+++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 588999999875 356999999999999999999999999999999999999876 69999999
Q ss_pred EeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 010509 113 KPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTR 186 (508)
Q Consensus 113 ~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 186 (508)
+++.. ..++.++|++|++.+++. |++||+.+....+. ...+++..++++++++.+++.+...... +..+.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLG--TTAQSRLDEVVEKSLRQAALWDEVKDNL-HKSGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcC--CChhhHHHHHHHHHHHHhCCchhhhhHh-hCCcc
Confidence 98642 346789999999998885 99999988654321 1112233456778888888753221111 23345
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++ +++|||++||+++ .+.+.+|++++|++|++
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~G~i 224 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLTGDL 224 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeCCeE
Confidence 899999999999999999999999999999999999999999999995 5899999999986 57788999999999999
Q ss_pred EEEcChhhH
Q 010509 267 LYSGEASGA 275 (508)
Q Consensus 267 v~~G~~~~~ 275 (508)
++.|++++.
T Consensus 225 ~~~~~~~~~ 233 (251)
T PRK14249 225 VEYGRTGEI 233 (251)
T ss_pred EEeCCHHHH
Confidence 999998765
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=350.89 Aligned_cols=216 Identities=22% Similarity=0.399 Sum_probs=184.1
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-----cccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-----INGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-----~~G~I~~~G 112 (508)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+|+|+|+.++ ++|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 589999999875 35699999999999999999999999999999999999864 589999999
Q ss_pred EeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----cccccccCC
Q 010509 113 KPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS----ECKNSLIGG 182 (508)
Q Consensus 113 ~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~ 182 (508)
+++.. ..++.++|++|++.+++ +|++||+.+....+. ..++.+..++++++++.+|+. +..++
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~---- 146 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNK---- 146 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcC----
Confidence 98732 34567999999999888 899999987654321 123334456778899999984 33343
Q ss_pred CCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 183 PLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 183 ~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++|++++|+
T Consensus 147 -~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~ 223 (259)
T PRK14260 147 -SALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFS 223 (259)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEe
Confidence 3459999999999999999999999999999999999999999999999975 699999999987 5778999999998
Q ss_pred -----CCeEEEEcChhhHH
Q 010509 263 -----EGYPLYSGEASGAM 276 (508)
Q Consensus 263 -----~G~iv~~G~~~~~~ 276 (508)
+|++++.|++++..
T Consensus 224 ~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 224 TDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred ccCCCCceEEEeCCHHHHh
Confidence 59999999998763
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=350.52 Aligned_cols=221 Identities=21% Similarity=0.358 Sum_probs=186.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCc-----ccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI-----NGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~-----~G~I~~~G 112 (508)
.|+++|+++.++ ++.+|+|+||++++||+++|+|+||||||||+++|+|+.+|+ +|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 589999999875 346999999999999999999999999999999999998874 89999999
Q ss_pred EeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 010509 113 KPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTR 186 (508)
Q Consensus 113 ~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 186 (508)
+++.. ..++.++|++|++.+++ +|+.||+.+...... ..+..+..+++.++++.+++.+..+... +..+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKI-HKSAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHh-cCCcc
Confidence 88631 34567999999998888 899999987653321 1123344567889999999854321111 13345
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeC--
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSE-- 263 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~-- 263 (508)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++|||+. .+.++||++++|++
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 8999999999999999999999999999999999999999999999875 4899999999986 58899999999999
Q ss_pred ---CeEEEEcChhhHH
Q 010509 264 ---GYPLYSGEASGAM 276 (508)
Q Consensus 264 ---G~iv~~G~~~~~~ 276 (508)
|++++.|+++++.
T Consensus 229 ~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 229 NRIGQLVEFGLTKKIF 244 (261)
T ss_pred CcCceEEEeCCHHHHH
Confidence 9999999998874
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=343.42 Aligned_cols=210 Identities=28% Similarity=0.479 Sum_probs=182.0
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|+++.+... .+.+.+|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~ 72 (220)
T TIGR02982 2 ISIRNLNHYYGHG---------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGA 72 (220)
T ss_pred EEEEEEEEEccCC---------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhc
Confidence 6789999986411 012679999999999999999999999999999999999999999999999998742
Q ss_pred ------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 118 ------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 118 ------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
..++.++|++|++.+++.+|+.||+.++..... ....++..++++++++.+||.+..++.+ ++||||
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G 145 (220)
T TIGR02982 73 SEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLSGG 145 (220)
T ss_pred CHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHH
Confidence 245689999999999999999999998654321 1334555677899999999988777665 489999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ..+++|++++|++|++
T Consensus 146 ~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 146 QKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999986 5899999999985 3478999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=353.13 Aligned_cols=221 Identities=22% Similarity=0.378 Sum_probs=187.0
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-----cccEEEEC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-----INGRITYN 111 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-----~~G~I~~~ 111 (508)
..|+++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++
T Consensus 20 ~~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~ 86 (276)
T PRK14271 20 PAMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLG 86 (276)
T ss_pred cEEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEEC
Confidence 3689999999975 35799999999999999999999999999999999999874 79999999
Q ss_pred CEeCCh-----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 010509 112 GKPFSN-----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTR 186 (508)
Q Consensus 112 G~~~~~-----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 186 (508)
|+++.. ..++.++|++|++.+++ .|++||+.+..... ...+.++.++++.++++.+|+.+..++.. +..++
T Consensus 87 g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~ 162 (276)
T PRK14271 87 GRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRL-SDSPF 162 (276)
T ss_pred CEEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHh-hCCcc
Confidence 998742 34678999999998888 79999998764322 11234455556788999999975332211 12345
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++||+++|++|++
T Consensus 163 ~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~G~i 240 (276)
T PRK14271 163 RLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFDGRL 240 (276)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999999976 489999999986 57789999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
+..|++++..
T Consensus 241 ~~~g~~~~~~ 250 (276)
T PRK14271 241 VEEGPTEQLF 250 (276)
T ss_pred EEeCCHHHHH
Confidence 9999988763
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-43 Score=355.28 Aligned_cols=217 Identities=21% Similarity=0.355 Sum_probs=183.5
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEEC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITYN 111 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~~ 111 (508)
..|+++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.. |++|+|.++
T Consensus 38 ~~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~ 104 (286)
T PRK14275 38 PHVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFD 104 (286)
T ss_pred eEEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEEC
Confidence 4689999999875 3469999999999999999999999999999999999853 489999999
Q ss_pred CEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----cccccccC
Q 010509 112 GKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS----ECKNSLIG 181 (508)
Q Consensus 112 G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg 181 (508)
|+++.. ..++.++|++|++.+++. ||.||+.+....+. ..+....++++.++++.+|+. +..++.
T Consensus 105 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 179 (286)
T PRK14275 105 GEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLDKN-- 179 (286)
T ss_pred CEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhhCC--
Confidence 998632 245689999999988885 99999998654321 112233456678889999874 334444
Q ss_pred CCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 182 ~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++|++++|
T Consensus 180 ---~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L 254 (286)
T PRK14275 180 ---ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFF 254 (286)
T ss_pred ---hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEE
Confidence 458999999999999999999999999999999999999999999999975 589999999986 577889999999
Q ss_pred eCCeEEEEcChhhHH
Q 010509 262 SEGYPLYSGEASGAM 276 (508)
Q Consensus 262 ~~G~iv~~G~~~~~~ 276 (508)
++|+++..|+++++.
T Consensus 255 ~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 255 YEGVLVEHAPTAQLF 269 (286)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988763
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=349.16 Aligned_cols=218 Identities=25% Similarity=0.406 Sum_probs=182.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEe---
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP--- 114 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~--- 114 (508)
.|+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 69 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAE 69 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccc
Confidence 589999999875 3568999999999999999999999999999999999999999999999976
Q ss_pred --CCh----h----ccccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccC
Q 010509 115 --FSN----Q----MTRNTGFVTQEDV--LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIG 181 (508)
Q Consensus 115 --~~~----~----~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg 181 (508)
+.. . .++.++|++|++. +.+.+|+.||+.+..... . .....+..++++++++.+|+. +..++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~- 146 (253)
T TIGR02323 70 LELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDDLP- 146 (253)
T ss_pred cccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhcCc-
Confidence 431 1 2356999999974 456679999987543211 1 011223446788999999997 3566555
Q ss_pred CCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEE
Q 010509 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLL 260 (508)
Q Consensus 182 ~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~l 260 (508)
+.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||++. .+...+|++++
T Consensus 147 ----~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~ 221 (253)
T TIGR02323 147 ----RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLV 221 (253)
T ss_pred ----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEE
Confidence 489999999999999999999999999999999999999999999998764 899999999986 57778999999
Q ss_pred EeCCeEEEEcChhhHH
Q 010509 261 LSEGYPLYSGEASGAM 276 (508)
Q Consensus 261 L~~G~iv~~G~~~~~~ 276 (508)
|++|+++..|++++..
T Consensus 222 l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 222 MQQGRVVESGLTDQVL 237 (253)
T ss_pred EECCEEEEECCHHHHh
Confidence 9999999999887653
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=354.89 Aligned_cols=215 Identities=23% Similarity=0.389 Sum_probs=183.1
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEE
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITY 110 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~ 110 (508)
...|+++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|+.+ |++|+|.+
T Consensus 37 ~~~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i 103 (285)
T PRK14254 37 ETVIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTF 103 (285)
T ss_pred CceEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEE
Confidence 34699999999875 3569999999999999999999999999999999999985 68999999
Q ss_pred CCEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccc
Q 010509 111 NGKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE----CKNSLI 180 (508)
Q Consensus 111 ~G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v 180 (508)
+|+++.. ..++.++|++|++.+++. ||.||+.+....+. ... +..++++++++.+||.+ ..++.
T Consensus 104 ~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~- 177 (285)
T PRK14254 104 RGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS- 177 (285)
T ss_pred CCEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC-
Confidence 9998631 346689999999988885 99999988654321 122 34457889999999853 33443
Q ss_pred CCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEE-
Q 010509 181 GGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVL- 259 (508)
Q Consensus 181 g~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~- 259 (508)
+.+||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ .|||++||++. .+..++||++
T Consensus 178 ----~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~~-~i~~~~dri~v 251 (285)
T PRK14254 178 ----GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQ-QAARISDKTAV 251 (285)
T ss_pred ----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHH-HHHhhcCEEEE
Confidence 4599999999999999999999999999999999999999999999999864 89999999986 5778899975
Q ss_pred EEeCCeEEEEcChhhH
Q 010509 260 LLSEGYPLYSGEASGA 275 (508)
Q Consensus 260 lL~~G~iv~~G~~~~~ 275 (508)
+|++|+++..|++++.
T Consensus 252 ~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 252 FLTGGELVEFDDTDKI 267 (285)
T ss_pred EeeCCEEEEeCCHHHH
Confidence 6799999999988765
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-44 Score=350.13 Aligned_cols=215 Identities=27% Similarity=0.433 Sum_probs=176.7
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++.. ++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 i~~~~l~~~~~~~-----------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~ 69 (234)
T cd03251 1 VEFKNVTFRYPGD-----------GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDY 69 (234)
T ss_pred CEEEEEEEEeCCC-----------CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhC
Confidence 4678999887510 1369999999999999999999999999999999999999999999999988642
Q ss_pred ---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHH-----HHHHHHHHHc--CCCcccccccCCCCCCc
Q 010509 118 ---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKI-----KCAEAVMTEL--GLSECKNSLIGGPLTRG 187 (508)
Q Consensus 118 ---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~ 187 (508)
..++.++|++|++.+++ .|++||+.+.... ....+.. ..+++.++.+ ++.+..++. +..
T Consensus 70 ~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~ 138 (234)
T cd03251 70 TLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GVK 138 (234)
T ss_pred CHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CCc
Confidence 34567999999998887 6999999875321 1111111 1234556655 565555544 458
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||+++. +.. ||++++|++|+++
T Consensus 139 LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~~-~d~v~~l~~G~i~ 215 (234)
T cd03251 139 LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLST-IEN-ADRIVVLEDGKIV 215 (234)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-Hhh-CCEEEEecCCeEe
Confidence 999999999999999999999999999999999999999999999975 8999999999974 555 9999999999999
Q ss_pred EEcChhhHHHH
Q 010509 268 YSGEASGAMNY 278 (508)
Q Consensus 268 ~~G~~~~~~~~ 278 (508)
..|++++..+.
T Consensus 216 ~~~~~~~~~~~ 226 (234)
T cd03251 216 ERGTHEELLAQ 226 (234)
T ss_pred eeCCHHHHHHc
Confidence 99988776443
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=348.36 Aligned_cols=220 Identities=23% Similarity=0.343 Sum_probs=183.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC--C---cccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG--R---INGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~--~---~~G~I~~~G 112 (508)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ | ++|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 699999999875 3579999999999999999999999999999999999864 3 489999999
Q ss_pred EeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 010509 113 KPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTR 186 (508)
Q Consensus 113 ~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 186 (508)
+++.. ..++.++|++|++.+++. ||+||+.+....+. .....+.++.++++++.+++.+...+.. +..++
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 148 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRL-HDSAL 148 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHh-hcChh
Confidence 98742 235679999999998885 99999998754331 1123344566788899998853211111 12345
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.+|++++|++|++
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~G~i 226 (253)
T PRK14261 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYLGKL 226 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999999976 589999999986 47788999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
+..|++++..
T Consensus 227 ~~~g~~~~~~ 236 (253)
T PRK14261 227 IEFDKTTQIF 236 (253)
T ss_pred EEcCCHHHHH
Confidence 9999987653
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=346.13 Aligned_cols=202 Identities=25% Similarity=0.377 Sum_probs=174.3
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC----cccEEEECCEeCCh-hc-cccEEEEecCCC--CCCCCC
Q 010509 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR----INGRITYNGKPFSN-QM-TRNTGFVTQEDV--LSPYLT 137 (508)
Q Consensus 66 iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~----~~G~I~~~G~~~~~-~~-~~~i~yv~Q~~~--l~~~lT 137 (508)
+|+|+|+++++||+++|+||||||||||+|+|+|+.+| ++|+|.++|+++.. .. ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 57899999999999999999999999999999999988 89999999998754 22 357999999984 667789
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC---cccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 010509 138 VTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS---ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEP 214 (508)
Q Consensus 138 v~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~---~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEP 214 (508)
+.|++.+...... ....+.+++++++++.+|+. +..++.+ +.|||||||||+||++|+.+|++++||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKYP-----FQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999977643221 12234456789999999998 3455554 48999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHH
Q 010509 215 TSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 215 tsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~ 276 (508)
|+|||+.++..+.+.|++++++ |+|||++||+++ .+..++|++++|++|+++..|++++..
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999874 899999999986 577899999999999999999987764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-43 Score=346.78 Aligned_cols=217 Identities=24% Similarity=0.380 Sum_probs=181.9
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC--C---cccEEEEC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG--R---INGRITYN 111 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~--~---~~G~I~~~ 111 (508)
.+++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ | ++|+|.++
T Consensus 4 ~~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 70 (252)
T PRK14255 4 KIITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLR 70 (252)
T ss_pred ceEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEc
Confidence 4699999999875 3569999999999999999999999999999999999864 4 59999999
Q ss_pred CEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----cccccccC
Q 010509 112 GKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS----ECKNSLIG 181 (508)
Q Consensus 112 G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg 181 (508)
|+++.. ..++.++|++|++.+++ .|+.||+.+....+.. ..++...+++.+.++.+++. +..++.
T Consensus 71 g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~-- 145 (252)
T PRK14255 71 GQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHES-- 145 (252)
T ss_pred CEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcC--
Confidence 998731 34568999999998888 6999999886543211 12222345567788888774 233333
Q ss_pred CCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 182 ~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.+.+|++++|
T Consensus 146 ---~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l 220 (252)
T PRK14255 146 ---ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFF 220 (252)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEE
Confidence 458999999999999999999999999999999999999999999999976 589999999986 577889999999
Q ss_pred eCCeEEEEcChhhHH
Q 010509 262 SEGYPLYSGEASGAM 276 (508)
Q Consensus 262 ~~G~iv~~G~~~~~~ 276 (508)
++|+++..|++.+..
T Consensus 221 ~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 221 LTGNLIEFADTKQMF 235 (252)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999887663
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=375.66 Aligned_cols=230 Identities=25% Similarity=0.445 Sum_probs=197.1
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++||++.|......+ .+..+...+++||||++++||++||+|+||||||||.|+|+|+.+|++|+|.++|.+.+
T Consensus 279 ~ll~V~~l~k~y~~~~~~~--~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLF--VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred ceeEeeeeeeeeccccccc--cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 4689999999987543211 11123467999999999999999999999999999999999999999999999998731
Q ss_pred --h----hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCc
Q 010509 117 --N----QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTRG 187 (508)
Q Consensus 117 --~----~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~ 187 (508)
. ..++.+-+|+||+ .|.|.+||++++......... ....++++++.++++..||.. ..+ .+|++
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~~l~-----ryP~e 429 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPEFLD-----RYPHE 429 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHHHHh-----cCchh
Confidence 1 3456788888886 699999999999887654432 235677788999999999985 344 55679
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
||||||||++|||||+.+|++|++|||||.||+..+.+++++|+++.++ |.|.+++|||+. .+.++||||++|++|++
T Consensus 430 lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~G~i 508 (539)
T COG1123 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYDGRI 508 (539)
T ss_pred cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEECCeE
Confidence 9999999999999999999999999999999999999999999999875 999999999986 78899999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
|..|+.+++.
T Consensus 509 VE~G~~~~v~ 518 (539)
T COG1123 509 VEEGPTEKVF 518 (539)
T ss_pred EEeCCHHHHh
Confidence 9999888764
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=352.08 Aligned_cols=227 Identities=24% Similarity=0.410 Sum_probs=188.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++|+++.+..... .+ +..++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 3 ~l~~~nl~~~~~~~~~-~~---~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~ 78 (268)
T PRK10419 3 LLNVSGLSHHYAHGGL-SG---KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAK 78 (268)
T ss_pred eEEEeceEEEecCCcc-cc---ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccc
Confidence 4889999998752100 00 0013579999999999999999999999999999999999999999999999998642
Q ss_pred -------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCc
Q 010509 118 -------QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTRG 187 (508)
Q Consensus 118 -------~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~ 187 (508)
..++.++|++|++ .+++..|+.|++.+..... ...+..+..++++++++.+|+. +..++.+ +.
T Consensus 79 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~ 151 (268)
T PRK10419 79 LNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKRP-----PQ 151 (268)
T ss_pred cChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCCC-----cc
Confidence 2356899999997 4677899999987653211 1223445556789999999996 4666655 48
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|+|++||++. .+.+++|++++|++|++
T Consensus 152 LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~G~i 230 (268)
T PRK10419 152 LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDNGQI 230 (268)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999864 899999999986 57788999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
++.|++++..
T Consensus 231 ~~~g~~~~~~ 240 (268)
T PRK10419 231 VETQPVGDKL 240 (268)
T ss_pred eeeCChhhcc
Confidence 9999988754
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=421.73 Aligned_cols=227 Identities=26% Similarity=0.417 Sum_probs=204.0
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
-.|+++||+++++. +++.+|+|+|+.|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.
T Consensus 1936 ~~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~ 2004 (2272)
T TIGR01257 1936 DILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSIL 2004 (2272)
T ss_pred ceEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECc
Confidence 36999999998751 1257999999999999999999999999999999999999999999999999985
Q ss_pred h---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 117 N---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 117 ~---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
. ..++.+||+||++.+++.+||+|++.+.+.++ +.++++.+++++++++.+||.+.+|++++ +||||||
T Consensus 2005 ~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGqK 2076 (2272)
T TIGR01257 2005 TNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGNK 2076 (2272)
T ss_pred chHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHH
Confidence 3 34668999999999999999999999877664 23445556778999999999998888875 8999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
|||+||+||+.+|+|++|||||+|||+.+++.+++.|++++++|+|||++||+++ ++..+|||+++|++|+++..|+++
T Consensus 2077 qRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~G~i~~~Gs~q 2155 (2272)
T TIGR01257 2077 RKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVKGAFQCLGTIQ 2155 (2272)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999999878999999999986 688999999999999999999999
Q ss_pred hHHHHHHhcCC
Q 010509 274 GAMNYFASIGY 284 (508)
Q Consensus 274 ~~~~~f~~~g~ 284 (508)
++.+.|.. ||
T Consensus 2156 ~Lk~~~g~-g~ 2165 (2272)
T TIGR01257 2156 HLKSKFGD-GY 2165 (2272)
T ss_pred HHHHHhCC-ce
Confidence 99988863 44
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=381.35 Aligned_cols=216 Identities=23% Similarity=0.335 Sum_probs=187.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++ ++.+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~ 70 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRF 70 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCC
Confidence 689999999875 3569999999999999999999999999999999999999999999999998742
Q ss_pred -----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 -----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 -----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
..++.++|++|++.+++.+||.||+.++............+.+++++++++.+||.+..++.++ +|||||
T Consensus 71 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq 145 (501)
T PRK11288 71 ASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLK-----YLSIGQ 145 (501)
T ss_pred CCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchh-----hCCHHH
Confidence 2356899999999999999999999885321111112344555678899999999877776654 899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++|||+. .+.++||++++|++|+++..++.
T Consensus 146 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 146 RQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999999999999999878999999999986 57789999999999999877653
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-43 Score=345.32 Aligned_cols=227 Identities=27% Similarity=0.398 Sum_probs=183.9
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC--CCcccEEEECCEeCC
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL--GRINGRITYNGKPFS 116 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~--~~~~G~I~~~G~~~~ 116 (508)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++.
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 78899999875 356999999999999999999999999999999999995 689999999998764
Q ss_pred h----h-ccccEEEEecCCCCCCCCCHHHHHHHHHH-hcC--CC-CCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 010509 117 N----Q-MTRNTGFVTQEDVLSPYLTVTETMVFTAL-LQL--PN-SFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTR 186 (508)
Q Consensus 117 ~----~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~-l~~--~~-~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 186 (508)
. . .++.++|++|++.+++.+|+.+++.+... .+. .. .....+..++++++++.+++. +..++.+. +
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----V 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----C
Confidence 2 1 23569999999998888888777654321 110 00 011223356778899999995 44454432 3
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhh-ccEEEEEeCCe
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYM-FHKVLLLSEGY 265 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~-~D~v~lL~~G~ 265 (508)
+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||++|||+. .+... +|++++|++|+
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~g~ 223 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGR 223 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEECCe
Confidence 79999999999999999999999999999999999999999999999877899999999986 45555 89999999999
Q ss_pred EEEEcChhhHHHHHHhcCC
Q 010509 266 PLYSGEASGAMNYFASIGY 284 (508)
Q Consensus 266 iv~~G~~~~~~~~f~~~g~ 284 (508)
+++.|+++.+ ..++..++
T Consensus 224 i~~~g~~~~~-~~~~~~~~ 241 (248)
T PRK09580 224 IVKSGDFTLV-KQLEEQGY 241 (248)
T ss_pred EEEeCCHHHH-HHHHhcCC
Confidence 9999998854 44455444
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=352.46 Aligned_cols=219 Identities=23% Similarity=0.393 Sum_probs=182.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++|++++++. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 6 ~l~~~~l~~~~~~------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~ 73 (272)
T PRK15056 6 GIVVNDVTVTWRN------------GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ 73 (272)
T ss_pred eEEEEeEEEEecC------------CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH
Confidence 5899999998741 3569999999999999999999999999999999999999999999999998754
Q ss_pred hc-cccEEEEecCCCCC--CCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 118 QM-TRNTGFVTQEDVLS--PYLTVTETMVFTALLQLP-NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 118 ~~-~~~i~yv~Q~~~l~--~~lTv~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
.. ++.++|++|++.+. ...+++|++.+....... ......+.+++++++++.+||.+..++.++ .||||||
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG~~ 148 (272)
T PRK15056 74 ALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIG-----ELSGGQK 148 (272)
T ss_pred hhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHHHH
Confidence 33 34699999997652 234788988653211000 011122334567889999999988877765 8999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+++|+++++ +|++++.|+++
T Consensus 149 qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~G~i~~~g~~~ 226 (272)
T PRK15056 149 KRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-KGTVLASGPTE 226 (272)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHH
Confidence 9999999999999999999999999999999999999999877999999999986 577899999877 89999999987
Q ss_pred hH
Q 010509 274 GA 275 (508)
Q Consensus 274 ~~ 275 (508)
+.
T Consensus 227 ~~ 228 (272)
T PRK15056 227 TT 228 (272)
T ss_pred hc
Confidence 65
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-44 Score=323.94 Aligned_cols=212 Identities=31% Similarity=0.487 Sum_probs=187.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++++++.+.... +...||++|++.|++||-+||+|||||||||||-+++|+..|++|+|.+.|+++.+
T Consensus 6 ii~~~~l~ktvg~~~---------~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ 76 (228)
T COG4181 6 IIEVHHLSKTVGQGE---------GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHK 76 (228)
T ss_pred eeehhhhhhhhcCCC---------cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhh
Confidence 588899998876432 35789999999999999999999999999999999999999999999999998853
Q ss_pred -------h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccC
Q 010509 118 -------Q-MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVS 189 (508)
Q Consensus 118 -------~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 189 (508)
. ..+++|+|||...+.|+||..||+...+.++-. +..+..+.+.+.|+.+||.+..+.+. .+||
T Consensus 77 ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~HyP-----~qLS 148 (228)
T COG4181 77 LDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTHYP-----AQLS 148 (228)
T ss_pred cCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCcccccccCc-----cccC
Confidence 1 346899999999999999999999998877531 33445567889999999998776554 5999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEE
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLY 268 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~ 268 (508)
|||+|||+||||++..|+|||.||||-+||..+..+|.++|-.+.+ .|.|.|++||||. +..-|||.+-|.+|+++.
T Consensus 149 GGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 149 GGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRLVE 226 (228)
T ss_pred chHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeecceecc
Confidence 9999999999999999999999999999999999999999999975 5999999999986 556799999999999874
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-44 Score=349.31 Aligned_cols=217 Identities=26% Similarity=0.443 Sum_probs=173.7
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|+++.++.. +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 l~i~~l~~~~~~~----------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~ 70 (238)
T cd03249 1 IEFKNVSFRYPSR----------PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDL 70 (238)
T ss_pred CeEEEEEEecCCC----------CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhc
Confidence 4678999886411 12469999999999999999999999999999999999999999999999988642
Q ss_pred ---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHH-----HHHHHHHHc--CCCcccccccCCCCCCc
Q 010509 118 ---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIK-----CAEAVMTEL--GLSECKNSLIGGPLTRG 187 (508)
Q Consensus 118 ---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~vg~~~~~~ 187 (508)
..++.++|++|++.+++ .||+||+.+.... ...++..+ .+.+.++.+ ++....++ .++.
T Consensus 71 ~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~ 139 (238)
T cd03249 71 NLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPD-----ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGE-----RGSQ 139 (238)
T ss_pred CHHHHHhhEEEECCchhhhh-hhHHHHhhccCCC-----CCHHHHHHHHHHcChHHHHHhhccccceeecc-----CCcc
Confidence 23567999999998876 6999999875321 11111111 112222333 33333333 3468
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ +|+|||++||+++. +. .||++++|++|+++
T Consensus 140 LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~-~~-~~d~v~~l~~G~i~ 216 (238)
T cd03249 140 LSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLST-IR-NADLIAVLQNGQVV 216 (238)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-Hh-hCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999997 78999999999874 54 79999999999999
Q ss_pred EEcChhhHHHHH
Q 010509 268 YSGEASGAMNYF 279 (508)
Q Consensus 268 ~~G~~~~~~~~f 279 (508)
+.|+.++..+..
T Consensus 217 ~~~~~~~~~~~~ 228 (238)
T cd03249 217 EQGTHDELMAQK 228 (238)
T ss_pred EeCCHHHHhhcC
Confidence 999987765543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-43 Score=347.36 Aligned_cols=220 Identities=20% Similarity=0.341 Sum_probs=185.7
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-----cccEEEE
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-----INGRITY 110 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-----~~G~I~~ 110 (508)
+..+.++++++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|+++| ++|+|.+
T Consensus 6 ~~~~~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~ 72 (261)
T PRK14263 6 PIVMDCKLDKIFYG-------------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHF 72 (261)
T ss_pred CceEEEEeEEEEeC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEE
Confidence 55688999988764 45799999999999999999999999999999999999865 7999999
Q ss_pred CCEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCC
Q 010509 111 NGKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPL 184 (508)
Q Consensus 111 ~G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 184 (508)
+|+++.. ..++.++|++|++.++ .+|+.||+.+....+. . ..+..++++++++.++|.+..+...+ ..
T Consensus 73 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~ 146 (261)
T PRK14263 73 LGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VS 146 (261)
T ss_pred CCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CC
Confidence 9998742 3456799999999887 5899999998754321 1 22345678899999998653322221 34
Q ss_pred CCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe--
Q 010509 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS-- 262 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~-- 262 (508)
++.||||||||++|||||+.+|++|+|||||+|||+.++.++.+.|+++++ ++|+|++||+++ .+.+++||+++|+
T Consensus 147 ~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~ 224 (261)
T PRK14263 147 GLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVADTTAFFSVD 224 (261)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEecc
Confidence 568999999999999999999999999999999999999999999999964 799999999986 5778999999996
Q ss_pred ------CCeEEEEcChhhHH
Q 010509 263 ------EGYPLYSGEASGAM 276 (508)
Q Consensus 263 ------~G~iv~~G~~~~~~ 276 (508)
+|+++..|++++..
T Consensus 225 ~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 225 ISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred cccccCCceEEEeCCHHHHH
Confidence 89999999988654
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-43 Score=350.24 Aligned_cols=218 Identities=21% Similarity=0.353 Sum_probs=183.1
Q ss_pred CCceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-----cccEE
Q 010509 34 KHPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-----INGRI 108 (508)
Q Consensus 34 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-----~~G~I 108 (508)
..+..|+++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ ++|+|
T Consensus 16 ~~~~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 82 (274)
T PRK14265 16 PDHSVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRL 82 (274)
T ss_pred CCCceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceE
Confidence 3455899999999875 35699999999999999999999999999999999999752 69999
Q ss_pred EECCEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccc
Q 010509 109 TYNGKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS----ECKNS 178 (508)
Q Consensus 109 ~~~G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~ 178 (508)
.++|+++.. ..++.++|++|++.+++. |+.||+.+....+ ... .+..+.+++.++.+++. +..++
T Consensus 83 ~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~ 157 (274)
T PRK14265 83 LYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRAN---GYK-GNLDELVEDSLRRAAIWEEVKDKLKE 157 (274)
T ss_pred EECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhc---Cch-HHHHHHHHHHHHHcccchhhHHHhcC
Confidence 999998731 345689999999988875 9999998764332 111 12234567788888874 23333
Q ss_pred ccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEE
Q 010509 179 LIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKV 258 (508)
Q Consensus 179 ~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v 258 (508)
.+..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++|++
T Consensus 158 -----~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i 230 (274)
T PRK14265 158 -----KGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWT 230 (274)
T ss_pred -----CcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEE
Confidence 3458999999999999999999999999999999999999999999999975 689999999986 577899999
Q ss_pred EEEe---------CCeEEEEcChhhHH
Q 010509 259 LLLS---------EGYPLYSGEASGAM 276 (508)
Q Consensus 259 ~lL~---------~G~iv~~G~~~~~~ 276 (508)
++|+ +|++++.|+++++.
T Consensus 231 ~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 231 AFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred EEEecccccccccCceEEEeCCHHHHH
Confidence 9998 89999999998774
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-43 Score=334.29 Aligned_cols=190 Identities=51% Similarity=0.859 Sum_probs=167.3
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC--CCcccEEEECCEe
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL--GRINGRITYNGKP 114 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~--~~~~G~I~~~G~~ 114 (508)
+.++++|+++.++... ....+.+|+|+|+++++||+++|+||||||||||+++|+|+. +|++|+|.++|++
T Consensus 2 ~~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~ 74 (194)
T cd03213 2 VTLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRP 74 (194)
T ss_pred cEEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEe
Confidence 3589999999986210 001256999999999999999999999999999999999999 9999999999998
Q ss_pred CCh-hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 115 FSN-QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 115 ~~~-~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
+.. ..++.++|++|++.+++.+|++||+.+..... .||||||
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~~ 117 (194)
T cd03213 75 LDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGER 117 (194)
T ss_pred CchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHHH
Confidence 864 45678999999999999999999997642110 5999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|+++..+.+.+|++++|++|++++.|
T Consensus 118 qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 118 KRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999999998779999999999875677889999999999998764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=381.40 Aligned_cols=215 Identities=21% Similarity=0.320 Sum_probs=185.7
Q ss_pred EeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh----
Q 010509 42 EDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN---- 117 (508)
Q Consensus 42 ~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~---- 117 (508)
+|++++++ ++++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 2 ~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 68 (491)
T PRK10982 2 SNISKSFP-------------GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSK 68 (491)
T ss_pred CceEEEeC-------------CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHH
Confidence 57777764 3579999999999999999999999999999999999999999999999998742
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH
Q 010509 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 -~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 196 (508)
..++.++|++|++.+++.+||+||+.+..........+.++..++++++++.+|+.+..++.++ +|||||||||
T Consensus 69 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv 143 (491)
T PRK10982 69 EALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVA-----TLSVSQMQMI 143 (491)
T ss_pred HHHhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCCHHHHHHH
Confidence 2356799999999899999999999875321101011334445678999999999887777664 8999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+..+||++++|++|+++..|++++.
T Consensus 144 ~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 144 EIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999999999999999999999999888999999999986 57788999999999999999987654
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=380.65 Aligned_cols=218 Identities=25% Similarity=0.398 Sum_probs=187.4
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC--cccEEEECCEeCC
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR--INGRITYNGKPFS 116 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~--~~G~I~~~G~~~~ 116 (508)
|+++|++++++ ++++|+|+|+++++||+++|+||||||||||+|+|+|+.+| ++|+|.++|+++.
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 78899999874 35699999999999999999999999999999999999876 7999999999874
Q ss_pred h-----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCccc-ccccCCCCCCccC
Q 010509 117 N-----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPN-SFTEKEKIKCAEAVMTELGLSECK-NSLIGGPLTRGVS 189 (508)
Q Consensus 117 ~-----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~LS 189 (508)
. ..++.++||+|++.+++.+||.||+.+........ ....++..++++++++.+||.+.. ++.+ ++||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV-----GDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch-----hhCC
Confidence 3 12457999999999999999999998864322111 123344556788999999998654 4445 4899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++|||++ .+.++||++++|++|+++..
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~G~i~~~ 222 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRDGQHVAT 222 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeCCeEeee
Confidence 99999999999999999999999999999999999999999999888999999999986 57789999999999999999
Q ss_pred cChhhH
Q 010509 270 GEASGA 275 (508)
Q Consensus 270 G~~~~~ 275 (508)
|++++.
T Consensus 223 ~~~~~~ 228 (500)
T TIGR02633 223 KDMSTM 228 (500)
T ss_pred cCcccC
Confidence 987653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-43 Score=337.27 Aligned_cols=198 Identities=23% Similarity=0.394 Sum_probs=173.2
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~ 68 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQ 68 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccc
Confidence 78899999875 3569999999999999999999999999999999999999999999999998742
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.++|++|++.+++.+|+.||+.+....+ .. +..++++++++.+||.+..++.+ +.||||||||
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~---~~---~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qr 137 (204)
T PRK13538 69 RDEYHQDLLYLGHQPGIKTELTALENLRFYQRLH---GP---GDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQRR 137 (204)
T ss_pred hHHhhhheEEeCCccccCcCCcHHHHHHHHHHhc---Cc---cHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHH
Confidence 34668999999999999999999998875432 11 22356789999999988777665 4899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||+++ .+..+.+|++++
T Consensus 138 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 138 VALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 99999999999999999999999999999999999999877899999999987 465666777766
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-43 Score=388.26 Aligned_cols=230 Identities=24% Similarity=0.405 Sum_probs=192.9
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..|+++||++.++.....+. +....+.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~--~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~ 389 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLN--RVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRID 389 (623)
T ss_pred ceEEEeeeEEEEcCCCcccc--ccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECC
Confidence 36999999998852110000 0001246999999999999999999999999999999999999999999999999874
Q ss_pred h-------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 010509 117 N-------QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTR 186 (508)
Q Consensus 117 ~-------~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 186 (508)
. ..++.++||+|++ .+++.+||.|++.+..... ....+++.+++++++|+.+||. +..++.+ +
T Consensus 390 ~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~-----~ 462 (623)
T PRK10261 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVH--GLLPGKAAAARVAWLLERVGLLPEHAWRYP-----H 462 (623)
T ss_pred cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCCHHHhhCCc-----c
Confidence 2 2356799999997 5889999999998765432 1112445567889999999996 5566665 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
+|||||||||+||+||+.+|++|||||||+|||+.++.+++++|++++++ |.|||++|||++ .+.++|||+++|++|+
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYLGQ 541 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999875 899999999986 5778999999999999
Q ss_pred EEEEcChhhHH
Q 010509 266 PLYSGEASGAM 276 (508)
Q Consensus 266 iv~~G~~~~~~ 276 (508)
+++.|+++++.
T Consensus 542 iv~~g~~~~i~ 552 (623)
T PRK10261 542 IVEIGPRRAVF 552 (623)
T ss_pred EEEecCHHHHh
Confidence 99999998874
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-43 Score=333.51 Aligned_cols=187 Identities=48% Similarity=0.818 Sum_probs=165.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC--CCcccEEEECCEeC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL--GRINGRITYNGKPF 115 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~--~~~~G~I~~~G~~~ 115 (508)
.++++|+++.++... .++.+|+|+|+++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++
T Consensus 3 ~l~~~~l~~~~~~~~---------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVKG---------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCCC---------CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 588999999875210 1256999999999999999999999999999999999985 48999999999987
Q ss_pred ChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 116 SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 116 ~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
....++.++|++|++.+++.+|++||+.+.... + +||||||||
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~qr 116 (192)
T cd03232 74 DKNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRKR 116 (192)
T ss_pred HHHhhhceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhHH
Confidence 655567899999999999999999999864211 0 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC-CeEEEEc
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE-GYPLYSG 270 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~-G~iv~~G 270 (508)
++||++|+.+|++++|||||+|||+.++..+++.|++++++|+|||++||+++..+.+.+|++++|++ |++++.|
T Consensus 117 v~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 117 LTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999877999999999987446788999999998 9999875
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-44 Score=394.40 Aligned_cols=219 Identities=28% Similarity=0.498 Sum_probs=187.1
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
-.++++|++|+|+.. +..+|+|+|++|+|||.+||+|+||||||||+|+|+|++.|++|+|.+||.+++
T Consensus 470 g~I~~~nvsf~y~~~-----------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~ 538 (709)
T COG2274 470 GEIEFENVSFRYGPD-----------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLN 538 (709)
T ss_pred ceEEEEEEEEEeCCC-----------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHH
Confidence 369999999998732 246999999999999999999999999999999999999999999999999986
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHH-----HHHHHHcCCCcccccccCCCCCCc
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCA-----EAVMTELGLSECKNSLIGGPLTRG 187 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~vg~~~~~~ 187 (508)
. ..|+++|||+||+.++.. |++||+.++. | ..+.++..+.+ .+.++ .+..-.||.+| +...+
T Consensus 539 ~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~----p-~~~~e~i~~A~~~ag~~~fI~--~lP~gy~t~v~-E~G~~ 609 (709)
T COG2274 539 DIDLASLRRQVGYVLQDPFLFSG-SIRENIALGN----P-EATDEEIIEAAQLAGAHEFIE--NLPMGYDTPVG-EGGAN 609 (709)
T ss_pred hcCHHHHHhheeEEcccchhhcC-cHHHHHhcCC----C-CCCHHHHHHHHHHhCcHHHHH--hcccccccccc-cCCCC
Confidence 4 578999999999999975 9999998764 2 22333322221 12222 34556688887 56678
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
||||||||++|||||+++|+||+||||||+||+.+...+.+.|+++.+ |+|+|+++|+++ ..+.|||+++|++|+++
T Consensus 610 LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~--ti~~adrIiVl~~Gkiv 686 (709)
T COG2274 610 LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLS--TIRSADRIIVLDQGKIV 686 (709)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccch--HhhhccEEEEccCCcee
Confidence 999999999999999999999999999999999999999999999864 699999999986 45789999999999999
Q ss_pred EEcChhhHHHH
Q 010509 268 YSGEASGAMNY 278 (508)
Q Consensus 268 ~~G~~~~~~~~ 278 (508)
.+|+.++..+.
T Consensus 687 ~~gs~~ell~~ 697 (709)
T COG2274 687 EQGSHEELLAQ 697 (709)
T ss_pred ccCCHHHHHHh
Confidence 99999988764
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=344.32 Aligned_cols=221 Identities=22% Similarity=0.366 Sum_probs=184.8
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEEC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITYN 111 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~~ 111 (508)
+.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.++
T Consensus 2 ~~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~ 68 (250)
T PRK14266 2 YRIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLD 68 (250)
T ss_pred cEEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEEC
Confidence 3588999998864 3569999999999999999999999999999999999863 389999999
Q ss_pred CEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 010509 112 GKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT 185 (508)
Q Consensus 112 G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 185 (508)
|+++.. ..++.++|++|++.+++. |+.||+.+..... ...+++..++++.++++.+|+.+...... +..+
T Consensus 69 g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~ 144 (250)
T PRK14266 69 GVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKL-DKSA 144 (250)
T ss_pred CEEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCc
Confidence 998742 345689999999998885 9999998764322 11233445567889999999854321111 2334
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++. .+...+|++++|++|+
T Consensus 145 ~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~G~ 222 (250)
T PRK14266 145 LGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLNGE 222 (250)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEECCe
Confidence 58999999999999999999999999999999999999999999999965 799999999986 5778899999999999
Q ss_pred EEEEcChhhHH
Q 010509 266 PLYSGEASGAM 276 (508)
Q Consensus 266 iv~~G~~~~~~ 276 (508)
+++.|++++..
T Consensus 223 i~~~g~~~~~~ 233 (250)
T PRK14266 223 IIESGLTDQIF 233 (250)
T ss_pred EEEeCCHHHHH
Confidence 99999988763
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-43 Score=338.76 Aligned_cols=203 Identities=24% Similarity=0.353 Sum_probs=178.0
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
+..++++|++++++ ++.+++++|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++
T Consensus 9 ~~~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i 75 (214)
T PRK13543 9 PPLLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTA 75 (214)
T ss_pred cceEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEc
Confidence 34699999999864 35699999999999999999999999999999999999999999999999987
Q ss_pred Ch-hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHH
Q 010509 116 SN-QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 116 ~~-~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 194 (508)
.. ..++.++|++|++.+++.+|+.||+.+....+ .. ...+.++++++.++|.+..++.++ .|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~---~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLH---GR---RAKQMPGSALAIVGLAGYEDTLVR-----QLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhc---CC---cHHHHHHHHHHHcCChhhccCChh-----hCCHHHHH
Confidence 53 33457999999999999999999998865432 11 123456788999999887777664 89999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
|++||++++.+|++++|||||+|||+.++..+.+.|++++++|.|+|++|||++ .+.+++|++++++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEee
Confidence 999999999999999999999999999999999999999888999999999986 58899999999863
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=356.90 Aligned_cols=222 Identities=21% Similarity=0.368 Sum_probs=187.6
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEEC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITYN 111 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~~ 111 (508)
..++++|+++++.. +.+.+|+|+|++|++||+++|+|||||||||||++|+|+.. |++|+|.++
T Consensus 79 ~~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~id 147 (329)
T PRK14257 79 NVFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFL 147 (329)
T ss_pred ceEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 36999999998751 13569999999999999999999999999999999999874 579999999
Q ss_pred CEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHHcCCCcccccccCCCC
Q 010509 112 GKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFT-EKEKIKCAEAVMTELGLSECKNSLIGGPL 184 (508)
Q Consensus 112 G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 184 (508)
|+++.. ..++.++||||++.+++ .|++||+.|+.... ..+ ++...+.++++++.++|.+..++.++ ..
T Consensus 148 G~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~-~~ 222 (329)
T PRK14257 148 GTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLD-KA 222 (329)
T ss_pred CEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhh-CC
Confidence 999852 35678999999999886 79999999864321 122 22234557888999988544344443 44
Q ss_pred CCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
...||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||++||++. .+.+.+||+++|++|
T Consensus 223 ~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~G 300 (329)
T PRK14257 223 GNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQG 300 (329)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 569999999999999999999999999999999999999999999999876 699999999986 567889999999999
Q ss_pred eEEEEcChhhHH
Q 010509 265 YPLYSGEASGAM 276 (508)
Q Consensus 265 ~iv~~G~~~~~~ 276 (508)
+++..|+++++.
T Consensus 301 ~i~e~g~~~~l~ 312 (329)
T PRK14257 301 WIEEAGETKTIF 312 (329)
T ss_pred EEEEeCCHHHHh
Confidence 999999999874
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=345.18 Aligned_cols=215 Identities=29% Similarity=0.423 Sum_probs=173.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++. .+.+++|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 69 (229)
T cd03254 2 EIEFENVNFSYDE------------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRD 69 (229)
T ss_pred eEEEEEEEEecCC------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHH
Confidence 4789999998641 2459999999999999999999999999999999999999999999999988742
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc------CCCCCCc
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLI------GGPLTRG 187 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v------g~~~~~~ 187 (508)
..++.++|++|++.+++. |++||+.+.... ... +++++.++.+++.+..++.. -+..+++
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~-----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 139 (229)
T cd03254 70 ISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN-----ATD----EEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGN 139 (229)
T ss_pred cCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCC-----CCH----HHHHHHHHHhChHHHHHhCcccccCHhhcCCCc
Confidence 346679999999988875 999999865311 111 12333444444433222211 0123469
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
|||||||||+||++|+.+|++++|||||+|||+.++..+++.|++++ +|+|||++||+++. +. .+|++++|++|+++
T Consensus 140 LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~~-~~d~i~~l~~g~~~ 216 (229)
T cd03254 140 LSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-IK-NADKILVLDDGKII 216 (229)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-Hh-hCCEEEEEeCCeEE
Confidence 99999999999999999999999999999999999999999999996 48999999999864 54 59999999999999
Q ss_pred EEcChhhHHH
Q 010509 268 YSGEASGAMN 277 (508)
Q Consensus 268 ~~G~~~~~~~ 277 (508)
+.|+.++..+
T Consensus 217 ~~~~~~~~~~ 226 (229)
T cd03254 217 EEGTHDELLA 226 (229)
T ss_pred EeCCHHHHHh
Confidence 9988766543
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=345.67 Aligned_cols=217 Identities=27% Similarity=0.422 Sum_probs=184.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECC-----
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNG----- 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G----- 112 (508)
.++++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 10 ~i~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 10 VFNISRLYLYIN-------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYF 76 (257)
T ss_pred heeeeeEEEecC-------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEEC
Confidence 599999999875 46799999999999999999999999999999999999999887766665
Q ss_pred -EeCCh----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCC
Q 010509 113 -KPFSN----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE----CKNSLIGGP 183 (508)
Q Consensus 113 -~~~~~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~ 183 (508)
+++.. ..++.++|++|++.+++.+|++||+.+...... ...+++.+++++++++.+++.+ ..++.
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 150 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP---- 150 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC----
Confidence 44321 346689999999999999999999998754321 1134455567889999999964 33433
Q ss_pred CCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 184 LTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 184 ~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++. .+..+||++++|++
T Consensus 151 -~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~ 227 (257)
T PRK14246 151 -ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN 227 (257)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 458999999999999999999999999999999999999999999999965 699999999986 57788999999999
Q ss_pred CeEEEEcChhhHH
Q 010509 264 GYPLYSGEASGAM 276 (508)
Q Consensus 264 G~iv~~G~~~~~~ 276 (508)
|+++..|++++..
T Consensus 228 g~i~~~g~~~~~~ 240 (257)
T PRK14246 228 GELVEWGSSNEIF 240 (257)
T ss_pred CEEEEECCHHHHH
Confidence 9999999987654
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=347.23 Aligned_cols=218 Identities=21% Similarity=0.378 Sum_probs=181.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~~G 112 (508)
.|+++|++++++ .+++|+|+|+++++||+++|+||||||||||+|+|+|+.+ |++|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 699999999875 3569999999999999999999999999999999999875 4799999999
Q ss_pred EeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 010509 113 KPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTR 186 (508)
Q Consensus 113 ~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 186 (508)
+++.. ..++.++|++|++.+++ .|+.||+.+....+ ... .+..++++++++.+++.+..+... +..++
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDKL-KQSGL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHHh-cCCcc
Confidence 98631 34567999999998888 49999998865332 111 223456677888888753211111 12345
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe----
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS---- 262 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~---- 262 (508)
+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.++|||+++|+
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~ 228 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELT 228 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccc
Confidence 8999999999999999999999999999999999999999999999976 589999999986 5789999999998
Q ss_pred -----CCeEEEEcChhhHH
Q 010509 263 -----EGYPLYSGEASGAM 276 (508)
Q Consensus 263 -----~G~iv~~G~~~~~~ 276 (508)
+|+++..|+++++.
T Consensus 229 ~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 229 EGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred cccccCceEEEeCCHHHHH
Confidence 89999999988774
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-43 Score=341.19 Aligned_cols=209 Identities=22% Similarity=0.375 Sum_probs=176.3
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|++++++ ++++++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 6 ~~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 72 (225)
T PRK10247 6 PLLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDIS 72 (225)
T ss_pred ceEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcC
Confidence 3699999999874 357999999999999999999999999999999999999999999999999864
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCccCHH
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGG 191 (508)
. ..++.++|++|++.+++. |++||+.+....+. .. ...++++++++.+|+. +..++.+ +.||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G 141 (225)
T PRK10247 73 TLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN---QQ--PDPAIFLDDLERFALPDTILTKNI-----AELSGG 141 (225)
T ss_pred cCCHHHHHhccEEEecccccccc-cHHHHHHhHHhhcC---CC--hHHHHHHHHHHHcCCChHHhcCCc-----ccCCHH
Confidence 2 345689999999988874 99999987543321 11 1234578899999996 4556555 489999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEe-CCeEEEE
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLS-EGYPLYS 269 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~-~G~iv~~ 269 (508)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |.|||++||+++. +. .+|++++|+ ++..+.+
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~~-~~d~i~~l~~~~~~~~~ 219 (225)
T PRK10247 142 EKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-IN-HADKVITLQPHAGEMQE 219 (225)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-HH-hCCEEEEEecccchHhh
Confidence 999999999999999999999999999999999999999999764 8999999999874 54 699999995 5555555
Q ss_pred cC
Q 010509 270 GE 271 (508)
Q Consensus 270 G~ 271 (508)
|.
T Consensus 220 ~~ 221 (225)
T PRK10247 220 AR 221 (225)
T ss_pred hh
Confidence 53
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=388.92 Aligned_cols=212 Identities=24% Similarity=0.396 Sum_probs=181.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+++.+. +++++|+|+|++++|||.+||+||||||||||+++|+|++ |++|+|.+||+++.+
T Consensus 349 ~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~ 415 (588)
T PRK11174 349 TIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRE 415 (588)
T ss_pred eEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEeccc
Confidence 699999997643 1357999999999999999999999999999999999999 899999999998854
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CcccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGL-------SECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~ 186 (508)
.+|+.++||+|++.+|+. |++||+.++. + +.++++ ++++++..++ .+-.||.+|. ...
T Consensus 416 ~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~----~-~~~~ee----i~~al~~a~l~~~i~~lp~G~dT~vge-~G~ 484 (588)
T PRK11174 416 LDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGN----P-DASDEQ----LQQALENAWVSEFLPLLPQGLDTPIGD-QAA 484 (588)
T ss_pred CCHHHHHhheEEecCCCcCCCc-CHHHHhhcCC----C-CCCHHH----HHHHHHHhCHHHHHHhccccccccccc-CCC
Confidence 568899999999999985 9999998852 1 234433 3444444444 3455788874 356
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||||+++|+||+||||||+||+.++..+.+.|+++. +++|+|++||+++ ..+.+|+|++|++|++
T Consensus 485 ~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~i 561 (588)
T PRK11174 485 GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQI 561 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeCCeE
Confidence 899999999999999999999999999999999999999999999986 4799999999996 3466999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
+..|+.++..
T Consensus 562 ~e~G~~~eL~ 571 (588)
T PRK11174 562 VQQGDYAELS 571 (588)
T ss_pred eecCCHHHHH
Confidence 9999988775
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-43 Score=340.62 Aligned_cols=209 Identities=26% Similarity=0.480 Sum_probs=175.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+++.++. ..+.+++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~ 70 (220)
T cd03245 2 RIEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQ 70 (220)
T ss_pred eEEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHH
Confidence 3788999998641 12469999999999999999999999999999999999999999999999998642
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccC------CCCCCc
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIG------GPLTRG 187 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg------~~~~~~ 187 (508)
..++.++|++|++.+++ .|+.||+.+... ... .+.++++++.+++.+..++.+. ...+.+
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 140 (220)
T cd03245 71 LDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRG 140 (220)
T ss_pred CCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCcc
Confidence 24567999999998887 699999976421 111 2345678888898876665431 123458
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||++. .. +++|++++|++|+++
T Consensus 141 LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~ 217 (220)
T cd03245 141 LSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIV 217 (220)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEe
Confidence 9999999999999999999999999999999999999999999999765 89999999986 34 689999999999998
Q ss_pred EEc
Q 010509 268 YSG 270 (508)
Q Consensus 268 ~~G 270 (508)
+.|
T Consensus 218 ~~~ 220 (220)
T cd03245 218 ADG 220 (220)
T ss_pred ecC
Confidence 754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=339.49 Aligned_cols=193 Identities=24% Similarity=0.354 Sum_probs=166.5
Q ss_pred cccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHH
Q 010509 61 IEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTE 140 (508)
Q Consensus 61 ~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E 140 (508)
++++++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+...+++.+||+|
T Consensus 32 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~--------~~~~~~~~~~~tv~e 103 (224)
T cd03220 32 VGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL--------LGLGGGFNPELTGRE 103 (224)
T ss_pred cCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh--------hcccccCCCCCcHHH
Confidence 346789999999999999999999999999999999999999999999999987531 111234567799999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 010509 141 TMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDS 220 (508)
Q Consensus 141 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~ 220 (508)
|+.+..... ..+.++.+++++++++.+||.+..++.++ +||||||||++||++|+.+|++++|||||+|||+
T Consensus 104 nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllDEP~~gLD~ 175 (224)
T cd03220 104 NIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPVK-----TYSSGMKARLAFAIATALEPDILLIDEVLAVGDA 175 (224)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 998875432 12344455678889999999988887764 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 221 TIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 221 ~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
.++..+.+.|++++++|+|||++||+++ .+..++|++++|++|++++.|
T Consensus 176 ~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 176 AFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 9999999999999877899999999986 567889999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-44 Score=326.36 Aligned_cols=218 Identities=27% Similarity=0.461 Sum_probs=194.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++||.++|+ ...+|++||++.+.|+++.|+|.|||||||+|+||.-+..|..|.|.+||+.+.-
T Consensus 6 ~l~v~dlHK~~G-------------~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~ 72 (256)
T COG4598 6 ALEVEDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRL 72 (256)
T ss_pred ceehhHHHhhcc-------------cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEe
Confidence 577888877654 6789999999999999999999999999999999999999999999999987620
Q ss_pred -----------------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 010509 118 -----------------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLI 180 (508)
Q Consensus 118 -----------------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 180 (508)
.+|.+.|+|+|+..|.+.+||.||+.-+-.--+ +.++.+..++++.+|+.+|+.+.+|.+.
T Consensus 73 k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~YP 150 (256)
T COG4598 73 KRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADAYP 150 (256)
T ss_pred eeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhcCc
Confidence 235579999999999999999999976432111 3578888999999999999999887554
Q ss_pred CCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEE
Q 010509 181 GGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLL 260 (508)
Q Consensus 181 g~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~l 260 (508)
..|||||+||++|||||+.+|+++++|||||.|||.-.-++++.+++|+++|+|.+++||.+. ...+...+|+.
T Consensus 151 -----~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~-FAR~Vss~v~f 224 (256)
T COG4598 151 -----AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG-FARDVSSHVIF 224 (256)
T ss_pred -----cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh-HHHhhhhheEE
Confidence 589999999999999999999999999999999999999999999999999999999999986 57788999999
Q ss_pred EeCCeEEEEcChhhHH
Q 010509 261 LSEGYPLYSGEASGAM 276 (508)
Q Consensus 261 L~~G~iv~~G~~~~~~ 276 (508)
|++|.|-..|+|+++.
T Consensus 225 Lh~G~iEE~G~P~qvf 240 (256)
T COG4598 225 LHQGKIEEEGPPEQVF 240 (256)
T ss_pred eecceecccCChHHHh
Confidence 9999999999998763
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=379.18 Aligned_cols=219 Identities=26% Similarity=0.412 Sum_probs=187.8
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC--CCcccEEEEC-----
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL--GRINGRITYN----- 111 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~--~~~~G~I~~~----- 111 (508)
|+++|++++++ ++.+|+|+||++++||+++|+||||||||||||+|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~ 67 (520)
T TIGR03269 1 IEVKNLTKKFD-------------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCE 67 (520)
T ss_pred CEEEEEEEEEC-------------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccc
Confidence 46789998874 357999999999999999999999999999999999996 7999999997
Q ss_pred ------------------CEeC----------Ch----hccccEEEEecC-CCCCCCCCHHHHHHHHHHhcCCCCCCHHH
Q 010509 112 ------------------GKPF----------SN----QMTRNTGFVTQE-DVLSPYLTVTETMVFTALLQLPNSFTEKE 158 (508)
Q Consensus 112 ------------------G~~~----------~~----~~~~~i~yv~Q~-~~l~~~lTv~E~l~~~~~l~~~~~~~~~~ 158 (508)
|.++ .. ..++.++|++|+ +.+++.+||+|++.+..... ..+.++
T Consensus 68 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~ 144 (520)
T TIGR03269 68 KCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKE 144 (520)
T ss_pred cccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHH
Confidence 2221 00 234679999997 67888899999998865432 223445
Q ss_pred HHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CC
Q 010509 159 KIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GG 237 (508)
Q Consensus 159 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g 237 (508)
.+++++++++.+||.+..++.++ +|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++ .|
T Consensus 145 ~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g 219 (520)
T TIGR03269 145 AVGRAVDLIEMVQLSHRITHIAR-----DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASG 219 (520)
T ss_pred HHHHHHHHHHHcCChhhhhcCcc-----cCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 56788999999999887776664 8999999999999999999999999999999999999999999999975 49
Q ss_pred CEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHHHHH
Q 010509 238 RTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNYF 279 (508)
Q Consensus 238 ~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~~f 279 (508)
+|||++|||+. .+.++||++++|++|++++.|++++..+.+
T Consensus 220 ~tviivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 220 ISMVLTSHWPE-VIEDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred cEEEEEeCCHH-HHHHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 99999999986 577899999999999999999988876654
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-43 Score=322.84 Aligned_cols=221 Identities=28% Similarity=0.506 Sum_probs=195.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
++.+++++.+|+.. ...+|+|+|+++.+||.++++||||||||||||+++|..+|..|+|.+||++++.
T Consensus 3 ~l~~~~~sl~y~g~-----------~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~g 71 (259)
T COG4525 3 MLNVSHLSLSYEGK-----------PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEG 71 (259)
T ss_pred eeehhheEEecCCc-----------chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccC
Confidence 46677888877621 2559999999999999999999999999999999999999999999999999853
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVS 197 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 197 (508)
- ...-|.|+|++.++|-+|+.||+.|+.+++ ++++.++.+++.+.+..+||.+..++.+ -+|||||||||.
T Consensus 72 P-gaergvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvG 142 (259)
T COG4525 72 P-GAERGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVG 142 (259)
T ss_pred C-CccceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHH
Confidence 1 223589999999999999999999998886 5678899999999999999999887766 499999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEe--CCeEEEEcChhh
Q 010509 198 IGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLS--EGYPLYSGEASG 274 (508)
Q Consensus 198 Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~--~G~iv~~G~~~~ 274 (508)
|||||+.+|++|+||||++.||.-+++++.++|.++.+ .|+.++++||+.++ ..-+++|+++|+ .||++..-+++-
T Consensus 143 iARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieE-AlflatrLvvlsp~pgRvv~~~~~df 221 (259)
T COG4525 143 IARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEE-ALFLATRLVVLSPGPGRVVERLPLDF 221 (259)
T ss_pred HHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH-HHhhhheeEEecCCCceeeEecCCCH
Confidence 99999999999999999999999999999999999865 59999999999976 446799999999 689999888875
Q ss_pred HHHHH
Q 010509 275 AMNYF 279 (508)
Q Consensus 275 ~~~~f 279 (508)
...|-
T Consensus 222 ~rR~a 226 (259)
T COG4525 222 ARRYA 226 (259)
T ss_pred HHHhh
Confidence 54444
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-43 Score=386.75 Aligned_cols=222 Identities=24% Similarity=0.373 Sum_probs=189.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC-
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS- 116 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~- 116 (508)
+|+++|+++++.... +..++|+||||++++||++||+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 12 ~l~v~~l~~~y~~~~---------~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~ 82 (623)
T PRK10261 12 VLAVENLNIAFMQEQ---------QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRR 82 (623)
T ss_pred eEEEeceEEEecCCC---------CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecc
Confidence 699999999985210 1347999999999999999999999999999999999999999999999986431
Q ss_pred ------------h----hc-cccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc---
Q 010509 117 ------------N----QM-TRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE--- 174 (508)
Q Consensus 117 ------------~----~~-~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~--- 174 (508)
. .. ++.+|||+|++ .+++.+||.||+.+...... ..+..+.+++++++++.+||.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~ 160 (623)
T PRK10261 83 RSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQT 160 (623)
T ss_pred ccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhh
Confidence 1 12 24799999997 68889999999998765421 2345566678899999999964
Q ss_pred ccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHh
Q 010509 175 CKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYY 253 (508)
Q Consensus 175 ~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~ 253 (508)
..++.+ .+|||||||||+||+||+.+|++|||||||++||+.++.+++++|++++++ |+|||++|||+. .+.+
T Consensus 161 ~~~~~~-----~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~~~ 234 (623)
T PRK10261 161 ILSRYP-----HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VVAE 234 (623)
T ss_pred HHhCCC-----ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHH
Confidence 345544 599999999999999999999999999999999999999999999999865 999999999986 5778
Q ss_pred hccEEEEEeCCeEEEEcChhhHH
Q 010509 254 MFHKVLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 254 ~~D~v~lL~~G~iv~~G~~~~~~ 276 (508)
+||||++|++|+++..|+++++.
T Consensus 235 ~adri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 235 IADRVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred hCCEEEEeeCCeecccCCHHHhh
Confidence 99999999999999999987763
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=351.19 Aligned_cols=223 Identities=22% Similarity=0.390 Sum_probs=183.6
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEEC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITYN 111 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~~ 111 (508)
..|+++|++++++ ++.+|+|+|+++++||+++|+|||||||||||++|+|+++ |++|+|.++
T Consensus 44 ~~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~ 110 (305)
T PRK14264 44 AKLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELD 110 (305)
T ss_pred ceEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3699999999875 3569999999999999999999999999999999999975 689999999
Q ss_pred CEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC--C-------CCC-HHHHHHHHHHHHHHcCCCcc
Q 010509 112 GKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP--N-------SFT-EKEKIKCAEAVMTELGLSEC 175 (508)
Q Consensus 112 G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~--~-------~~~-~~~~~~~v~~~l~~lgL~~~ 175 (508)
|+++.. ..++.++|++|++.+++ .||+||+.+....+.. . ..+ .+...++++++++.+++.+.
T Consensus 111 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 189 (305)
T PRK14264 111 GQDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDE 189 (305)
T ss_pred CEEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchh
Confidence 998742 24568999999998887 4999999986532100 0 011 22335678889999988532
Q ss_pred cccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhc
Q 010509 176 KNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMF 255 (508)
Q Consensus 176 ~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~ 255 (508)
.+... +..+++||||||||++||++|+.+|+||||||||+|||+.++..+.+.|++++++ .|||++||+++ .+.+++
T Consensus 190 ~~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~-~tiiivtH~~~-~i~~~~ 266 (305)
T PRK14264 190 VNDRL-DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE-YTVVVVTHNMQ-QAARIS 266 (305)
T ss_pred hhHHh-cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-CEEEEEEcCHH-HHHHhc
Confidence 22222 2345699999999999999999999999999999999999999999999999874 89999999986 577889
Q ss_pred cEE-EEEeCCeEEEEcChhhHH
Q 010509 256 HKV-LLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 256 D~v-~lL~~G~iv~~G~~~~~~ 276 (508)
|++ ++|++|+++..|++++..
T Consensus 267 d~i~~~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 267 DQTAVFLTGGELVEYDDTDKIF 288 (305)
T ss_pred CEEEEEecCCEEEEeCCHHHHH
Confidence 996 578999999999987653
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=333.59 Aligned_cols=195 Identities=26% Similarity=0.408 Sum_probs=171.8
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
|+++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~ 67 (201)
T cd03231 1 LEADELTCERD-------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQ 67 (201)
T ss_pred CEEEEEEEEeC-------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc
Confidence 46789998864 3579999999999999999999999999999999999999999999999988642
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.++|++|++.+++.+|++||+.+.... . ..++++++++.+|+.+..++.+ +.||||||||
T Consensus 68 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 133 (201)
T cd03231 68 RDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQRR 133 (201)
T ss_pred cHHhhhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHHH
Confidence 4567899999999999999999999875311 1 2346788999999988777665 4899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||++.. ....+|+++++
T Consensus 134 l~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~-~~~~~~~~~~~ 198 (201)
T cd03231 134 VALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLG-LSEAGARELDL 198 (201)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchh-hhhccceeEec
Confidence 999999999999999999999999999999999999998779999999999864 66789999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-43 Score=369.43 Aligned_cols=216 Identities=28% Similarity=0.457 Sum_probs=187.1
Q ss_pred CceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEe
Q 010509 35 HPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP 114 (508)
Q Consensus 35 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~ 114 (508)
+++.++.+|+++.++. ++++++|+|+++++|+.+||+|+||||||||+++|+|+.+|++|+|.+||.+
T Consensus 317 ~~~ei~~~~l~~~y~~------------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~ 384 (559)
T COG4988 317 PPIEISLENLSFRYPD------------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGID 384 (559)
T ss_pred CCceeeecceEEecCC------------CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCcc
Confidence 4567777899999762 3489999999999999999999999999999999999999999999999998
Q ss_pred CCh----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc------ccccccCCCC
Q 010509 115 FSN----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE------CKNSLIGGPL 184 (508)
Q Consensus 115 ~~~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~------~~~~~vg~~~ 184 (508)
..+ .++++++||+|++.+++. |++||+.++.. ..+++ .+.++++..||.+ -.|+.+| +.
T Consensus 385 l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~~s~e----~i~~al~~a~l~~~v~~p~GLdt~ig-e~ 453 (559)
T COG4988 385 LRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARP-----DASDE----EIIAALDQAGLLEFVPKPDGLDTVIG-EG 453 (559)
T ss_pred ccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-----cCCHH----HHHHHHHHhcHHHhhcCCCcccchhc-cC
Confidence 753 678999999999999986 99999998631 22333 3556667666654 3466776 45
Q ss_pred CCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
.++|||||+|||++||||+.+++++++||||++||.++.+.|++.|.+++++ +|++++||++.. + .-+|+|++|++|
T Consensus 454 G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHrl~~-~-~~~D~I~vld~G 530 (559)
T COG4988 454 GAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHRLED-A-ADADRIVVLDNG 530 (559)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcChHH-H-hcCCEEEEecCC
Confidence 6789999999999999999999999999999999999999999999999875 999999999863 4 558999999999
Q ss_pred eEEEEcChhhHH
Q 010509 265 YPLYSGEASGAM 276 (508)
Q Consensus 265 ~iv~~G~~~~~~ 276 (508)
+++..|..++..
T Consensus 531 ~l~~~g~~~~L~ 542 (559)
T COG4988 531 RLVEQGTHEELS 542 (559)
T ss_pred ceeccCCHHHHh
Confidence 999999998874
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=378.22 Aligned_cols=219 Identities=28% Similarity=0.489 Sum_probs=189.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++|+|++|.|+.+ ++.+||+|+||+++|||.+||+||||+||||+.++|-.++.|++|+|.+||+|+.+
T Consensus 465 ~IeF~~VsFaYP~R----------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~ 534 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTR----------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISD 534 (716)
T ss_pred eEEEEEeeeecCCC----------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhh
Confidence 69999999999843 25789999999999999999999999999999999999999999999999999864
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH---HcCCCcccccccCCCCCCccCH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMT---ELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~---~lgL~~~~~~~vg~~~~~~LSG 190 (508)
.+|++||+|.|||.||.. ||+||+.|+.. ..++++..+.++..-. ..++.+-.||.+| ++..+|||
T Consensus 535 ~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VG-EkG~qLSG 607 (716)
T KOG0058|consen 535 INHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD-----NATDEEIEAAAKMANAHEFITNFPDGYNTVVG-EKGSQLSG 607 (716)
T ss_pred cCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHhCccccccccC-Cccccccc
Confidence 468899999999999986 99999999753 2344444333322211 1367888999998 55668999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
|||||++|||||++||+||||||.||+||+.+...+.+.|.++.+ ++|||++.|.++. + +.+|+|+++++|++++.|
T Consensus 608 GQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLST-V-~~Ad~Ivvi~~G~V~E~G 684 (716)
T KOG0058|consen 608 GQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLST-V-RHADQIVVIDKGRVVEMG 684 (716)
T ss_pred hHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhH-h-hhccEEEEEcCCeEEecc
Confidence 999999999999999999999999999999999999999999875 4999999999973 4 679999999999999999
Q ss_pred ChhhHH
Q 010509 271 EASGAM 276 (508)
Q Consensus 271 ~~~~~~ 276 (508)
+-++..
T Consensus 685 ~h~eLl 690 (716)
T KOG0058|consen 685 THDELL 690 (716)
T ss_pred cHHHHh
Confidence 877664
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-43 Score=342.87 Aligned_cols=212 Identities=27% Similarity=0.467 Sum_probs=171.1
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~ 68 (236)
T cd03253 1 IEFENVTFAYDP------------GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREV 68 (236)
T ss_pred CEEEEEEEEeCC------------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhC
Confidence 467899887641 2469999999999999999999999999999999999999999999999998742
Q ss_pred ---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCCCCCc
Q 010509 118 ---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK-------NSLIGGPLTRG 187 (508)
Q Consensus 118 ---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~~ 187 (508)
..++.++|++|++.+++ .|++||+.+... ..+..+ +.+.++..++.+.. ++.. +..++.
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~~~ 137 (236)
T cd03253 69 TLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRP-----DATDEE----VIEAAKAAQIHDKIMRFPDGYDTIV-GERGLK 137 (236)
T ss_pred CHHHHHhhEEEECCCChhhc-chHHHHHhhcCC-----CCCHHH----HHHHHHHcCcHHHHHhccccccchh-hcCCCc
Confidence 34567999999998886 699999987531 112211 22223333332221 1111 123468
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||+++. +. .+|++++|++|+++
T Consensus 138 LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~-~~-~~d~~~~l~~g~i~ 214 (236)
T cd03253 138 LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLST-IV-NADKIIVLKDGRIV 214 (236)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-HH-hCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999987 9999999999874 54 49999999999999
Q ss_pred EEcChhhHH
Q 010509 268 YSGEASGAM 276 (508)
Q Consensus 268 ~~G~~~~~~ 276 (508)
..|++++..
T Consensus 215 ~~~~~~~~~ 223 (236)
T cd03253 215 ERGTHEELL 223 (236)
T ss_pred eeCCHHHHh
Confidence 999877654
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=332.19 Aligned_cols=220 Identities=24% Similarity=0.428 Sum_probs=198.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|++++++ .+.+|+|+|+++++|.+++++|||||||||||.+++.+++.++|+|+++|.++..
T Consensus 1 MI~i~nv~K~y~-------------~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~ 67 (252)
T COG4604 1 MITIENVSKSYG-------------TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTS 67 (252)
T ss_pred CeeehhhhHhhC-------------CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeeccc
Confidence 367888888765 6889999999999999999999999999999999999999999999999999853
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
++.+.++.+-|+......+||+|-+.|+..- ..++...++.+..+++.++.++|++..|+... +||||||
T Consensus 68 ~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfP-YSqGRlt~eD~~~I~~aieyl~L~~l~dryLd-----~LSGGQr 141 (252)
T COG4604 68 TPSKELAKKLSILKQENHINSRLTVRDLVGFGRFP-YSQGRLTKEDRRIINEAIEYLHLEDLSDRYLD-----ELSGGQR 141 (252)
T ss_pred CChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCc-ccCCCCchHHHHHHHHHHHHhcccchHHHhHH-----hcccchh
Confidence 5677899999999999999999999997422 11233456677889999999999999998875 9999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
||.-||+.++.+.+.++||||.++||-..+.++|+.|++++++ |+||+++.||.+ .+..++|+|+-|++|+++..|++
T Consensus 142 QRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN-fAS~YsD~IVAlK~G~vv~~G~~ 220 (252)
T COG4604 142 QRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN-FASCYSDHIVALKNGKVVKQGSP 220 (252)
T ss_pred hhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc-HHHhhhhheeeecCCEEEecCCH
Confidence 9999999999999999999999999999999999999999976 999999999997 57788999999999999999999
Q ss_pred hhHHH
Q 010509 273 SGAMN 277 (508)
Q Consensus 273 ~~~~~ 277 (508)
+++.+
T Consensus 221 ~eii~ 225 (252)
T COG4604 221 DEIIQ 225 (252)
T ss_pred HHhcC
Confidence 98753
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=343.11 Aligned_cols=217 Identities=21% Similarity=0.316 Sum_probs=182.7
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-----cccEEEE
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-----INGRITY 110 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-----~~G~I~~ 110 (508)
+..|+++|++++++ ++++|+|+|+++++||+++|+|+||||||||+++|+|+..| ++|+|.+
T Consensus 14 ~~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~ 80 (265)
T PRK14252 14 QQKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL 80 (265)
T ss_pred CceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEE
Confidence 45699999999875 35799999999999999999999999999999999999864 7999999
Q ss_pred CCEeCC--------hhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHHcCCCc----ccc
Q 010509 111 NGKPFS--------NQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFT-EKEKIKCAEAVMTELGLSE----CKN 177 (508)
Q Consensus 111 ~G~~~~--------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~-~~~~~~~v~~~l~~lgL~~----~~~ 177 (508)
+|+++. ...++.++|++|++.+++. |++||+.+..... ... +...+++++++++.+++.+ ..+
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~ 156 (265)
T PRK14252 81 HPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALWDEVKDRLG 156 (265)
T ss_pred cCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCchhhhHHHh
Confidence 997653 1345679999999999886 9999998765322 111 2223456788888888742 233
Q ss_pred cccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccE
Q 010509 178 SLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHK 257 (508)
Q Consensus 178 ~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~ 257 (508)
+. ...||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++|+
T Consensus 157 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~ 229 (265)
T PRK14252 157 DL-----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDY 229 (265)
T ss_pred CC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCE
Confidence 33 358999999999999999999999999999999999999999999999976 689999999986 57789999
Q ss_pred EEEEeCCeEEEEcChhhHH
Q 010509 258 VLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 258 v~lL~~G~iv~~G~~~~~~ 276 (508)
+++|++|+++..|+.++..
T Consensus 230 i~~l~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 230 TAYMYMGELIEFGATDTIF 248 (265)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999987653
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=377.11 Aligned_cols=222 Identities=23% Similarity=0.391 Sum_probs=187.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-----cccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-----INGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-----~~G~I~~~G 112 (508)
+++++|++++++... ..+.+|+|+||++++||+++|+||||||||||+|+|+|+++| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~---------~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 75 (529)
T PRK15134 5 LLAIENLSVAFRQQQ---------TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHG 75 (529)
T ss_pred eEEEeceEEEecCCC---------CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECC
Confidence 699999999975210 125799999999999999999999999999999999999875 799999999
Q ss_pred EeCCh----h---cc-ccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc---cccc
Q 010509 113 KPFSN----Q---MT-RNTGFVTQEDV--LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC---KNSL 179 (508)
Q Consensus 113 ~~~~~----~---~~-~~i~yv~Q~~~--l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~~~ 179 (508)
+++.. . .+ +.+||++|++. +++.+|+.|++.+...... ..+..+.+++++++++.+||.+. .++.
T Consensus 76 ~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 153 (529)
T PRK15134 76 ESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTDY 153 (529)
T ss_pred EecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhhC
Confidence 98742 1 22 47999999974 6777899999876543211 23445566788999999999763 4655
Q ss_pred cCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEE
Q 010509 180 IGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKV 258 (508)
Q Consensus 180 vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v 258 (508)
+ .+|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++|||+. .+..+|||+
T Consensus 154 ~-----~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri 227 (529)
T PRK15134 154 P-----HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRV 227 (529)
T ss_pred C-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEE
Confidence 5 499999999999999999999999999999999999999999999999865 899999999986 567889999
Q ss_pred EEEeCCeEEEEcChhhHH
Q 010509 259 LLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 259 ~lL~~G~iv~~G~~~~~~ 276 (508)
++|++|++++.|+++++.
T Consensus 228 ~~l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 228 AVMQNGRCVEQNRAATLF 245 (529)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999887653
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=413.15 Aligned_cols=224 Identities=27% Similarity=0.392 Sum_probs=200.7
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
...|+++||++.++. +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++
T Consensus 926 ~~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI 994 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEP-----------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI 994 (2272)
T ss_pred CceEEEEeEEEEecC-----------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 347999999998741 136799999999999999999999999999999999999999999999999998
Q ss_pred Ch---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 116 SN---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 116 ~~---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
.. ..++.+||++|++.+++.+||+|++.+.++++ +.+.++.+++++++++.+||.+.+|+.++ +|||||
T Consensus 995 ~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~~~~~~~~~-----~LSGGq 1066 (2272)
T TIGR01257 995 ETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEEAQ-----DLSGGM 1066 (2272)
T ss_pred cchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHH
Confidence 53 35678999999999999999999999987654 23344556788999999999988887765 899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
||||+||+||+.+|++++|||||+|||+.++..++++|++++ +|+|||++||+++ ++..++||+++|++|+++..|++
T Consensus 1067 KQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~GkL~~~Gs~ 1144 (2272)
T TIGR01257 1067 QRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQGRLYCSGTP 1144 (2272)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCH
Confidence 999999999999999999999999999999999999999995 5999999999986 57789999999999999999999
Q ss_pred hhHHHHHH
Q 010509 273 SGAMNYFA 280 (508)
Q Consensus 273 ~~~~~~f~ 280 (508)
+++.+.|.
T Consensus 1145 ~~Lk~~~g 1152 (2272)
T TIGR01257 1145 LFLKNCFG 1152 (2272)
T ss_pred HHHHHhcC
Confidence 99987764
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-43 Score=391.82 Aligned_cols=211 Identities=27% Similarity=0.414 Sum_probs=182.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++|+|+. .++++|+|+|+++++||.+||+||||||||||+|+|+|+++|++|+|.+||+++.+
T Consensus 451 ~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~ 519 (686)
T TIGR03797 451 AIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAG 519 (686)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCc
Confidence 6999999999852 13579999999999999999999999999999999999999999999999999853
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-------CKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~ 186 (508)
.+|+.+|||+|++.+++. |++||+.++.. .++ +++.++++..|+.+ -.||.+|+ ...
T Consensus 520 ~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~------~~~----e~i~~al~~a~l~~~i~~lp~G~dt~ige-~G~ 587 (686)
T TIGR03797 520 LDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP------LTL----DEAWEAARMAGLAEDIRAMPMGMHTVISE-GGG 587 (686)
T ss_pred CCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC------CCH----HHHHHHHHHcCcHHHHHhccccccccccC-CCC
Confidence 578899999999999975 99999987521 233 33556677666654 34777773 456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||||+++|++|+||||||+||+.+..++.+.|+++ ++|+|++||+++. + +.+|+|++|++|++
T Consensus 588 ~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~-i-~~~D~Iivl~~G~i 662 (686)
T TIGR03797 588 TLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLST-I-RNADRIYVLDAGRV 662 (686)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHH-H-HcCCEEEEEECCEE
Confidence 89999999999999999999999999999999999999999999887 5799999999863 4 66999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
+..|+.++..
T Consensus 663 v~~G~~~~Ll 672 (686)
T TIGR03797 663 VQQGTYDELM 672 (686)
T ss_pred EEECCHHHHH
Confidence 9999988775
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=343.34 Aligned_cols=199 Identities=27% Similarity=0.441 Sum_probs=174.5
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh----hccccEEEEecCCCCCCCCCHHHH
Q 010509 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----QMTRNTGFVTQEDVLSPYLTVTET 141 (508)
Q Consensus 66 iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lTv~E~ 141 (508)
+|+|+||++++||+++|+||||||||||+++|+|+.+ .+|+|.++|+++.. ..++.++|++|++.+++.+|+.||
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~n 89 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQY 89 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHH
Confidence 7999999999999999999999999999999999985 49999999998743 334579999999888888999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhh-------CCCEEEEeCC
Q 010509 142 MVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILI-------NPSLLFLDEP 214 (508)
Q Consensus 142 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~-------~P~illLDEP 214 (508)
+.+.... ..+.++..++++++++.+||.+..++.+ +.||||||||++||++|+. +|++++||||
T Consensus 90 l~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEP 160 (248)
T PRK03695 90 LTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEP 160 (248)
T ss_pred HHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCC
Confidence 9875321 1223344567889999999988777665 4899999999999999998 6799999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 215 TSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 215 tsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
|+|||+.++..+.+.|++++++|+|||++||+++ .+.+++|++++|++|+++..|++++.
T Consensus 161 t~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 161 MNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999877999999999986 57789999999999999999988765
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=340.40 Aligned_cols=224 Identities=23% Similarity=0.321 Sum_probs=188.6
Q ss_pred eeEEEEeEEEEEeccccc-------cCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEE
Q 010509 37 VTLKFEDIVYKIKMKKGF-------YGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRIT 109 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~-------~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~ 109 (508)
+.++++|+++.++..... +........+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~ 82 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD 82 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 578999999988753211 0001122356799999999999999999999999999999999999999999999
Q ss_pred ECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccC
Q 010509 110 YNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVS 189 (508)
Q Consensus 110 ~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 189 (508)
++|+ +++++|+..+.+.+|+.||+.+..... ..+.++..+.++++++.+++.+..++.+ +.||
T Consensus 83 ~~g~---------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 145 (264)
T PRK13546 83 RNGE---------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPV-----KKYS 145 (264)
T ss_pred ECCE---------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccCC
Confidence 9985 457778877888899999998764332 2234455566788899999988777665 4899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++.|+|||++||++. .+.+.+|++++|++|+++..
T Consensus 146 ~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~G~i~~~ 224 (264)
T PRK13546 146 SGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEGGKLKDY 224 (264)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999878999999999986 57788999999999999999
Q ss_pred cChhhHHHH
Q 010509 270 GEASGAMNY 278 (508)
Q Consensus 270 G~~~~~~~~ 278 (508)
|++++..+-
T Consensus 225 g~~~~~~~~ 233 (264)
T PRK13546 225 GELDDVLPK 233 (264)
T ss_pred CCHHHHHHH
Confidence 998876553
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=376.19 Aligned_cols=223 Identities=22% Similarity=0.359 Sum_probs=187.6
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEEC-CEe-
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYN-GKP- 114 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~-G~~- 114 (508)
.+|+++|++++++.. +.+.+.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++ |.+
T Consensus 278 ~~l~~~~l~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~ 349 (520)
T TIGR03269 278 PIIKVRNVSKRYISV--------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEW 349 (520)
T ss_pred ceEEEeccEEEeccC--------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcc
Confidence 369999999987410 0013569999999999999999999999999999999999999999999996 532
Q ss_pred --CCh-------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-----cccccc
Q 010509 115 --FSN-------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-----CKNSLI 180 (508)
Q Consensus 115 --~~~-------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~v 180 (508)
+.. ..++.++|++|++.+++.+||.|++.+..... .+.++.+++++++++.+||.+ ..++.+
T Consensus 350 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 425 (520)
T TIGR03269 350 VDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYP 425 (520)
T ss_pred ccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCCh
Confidence 211 23457999999999999999999998754321 223334567889999999975 345555
Q ss_pred CCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEE
Q 010509 181 GGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVL 259 (508)
Q Consensus 181 g~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~ 259 (508)
++|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |.|||++|||+. .+.++||+++
T Consensus 426 -----~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~ 499 (520)
T TIGR03269 426 -----DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAA 499 (520)
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEE
Confidence 599999999999999999999999999999999999999999999999764 899999999986 5778999999
Q ss_pred EEeCCeEEEEcChhhHHH
Q 010509 260 LLSEGYPLYSGEASGAMN 277 (508)
Q Consensus 260 lL~~G~iv~~G~~~~~~~ 277 (508)
+|++|+++..|+++++.+
T Consensus 500 ~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 500 LMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred EEECCEEEEECCHHHHHh
Confidence 999999999999877643
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=377.59 Aligned_cols=222 Identities=21% Similarity=0.365 Sum_probs=187.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-CcccEEEECCEeCC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-RINGRITYNGKPFS 116 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-~~~G~I~~~G~~~~ 116 (508)
.|+++|++++++.. +++.+|+|+||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 259 ~l~~~~l~~~~~~~----------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~ 328 (506)
T PRK13549 259 ILEVRNLTAWDPVN----------PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVK 328 (506)
T ss_pred eEEEecCccccccc----------cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECC
Confidence 58999999876310 13469999999999999999999999999999999999998 59999999999874
Q ss_pred h-----hccccEEEEecCC---CCCCCCCHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 010509 117 N-----QMTRNTGFVTQED---VLSPYLTVTETMVFTALLQLPN--SFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLT 185 (508)
Q Consensus 117 ~-----~~~~~i~yv~Q~~---~l~~~lTv~E~l~~~~~l~~~~--~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~ 185 (508)
. ..++.++|++|++ .+++.+||.||+.+........ ..++++.+++++++++.+|+. +..++.++
T Consensus 329 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 404 (506)
T PRK13549 329 IRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIA---- 404 (506)
T ss_pred CCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccc----
Confidence 2 2345799999985 4788899999998753211110 012334456789999999996 56777665
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.++|++++++|+|||++|||++ .+.++||++++|++|+
T Consensus 405 -~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~G~ 482 (506)
T PRK13549 405 -RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHEGK 482 (506)
T ss_pred -cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999999888999999999986 5778999999999999
Q ss_pred EEEEcChhhH
Q 010509 266 PLYSGEASGA 275 (508)
Q Consensus 266 iv~~G~~~~~ 275 (508)
++..|+++++
T Consensus 483 i~~~~~~~~~ 492 (506)
T PRK13549 483 LKGDLINHNL 492 (506)
T ss_pred EEEEeccccC
Confidence 9999987764
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=324.17 Aligned_cols=170 Identities=33% Similarity=0.557 Sum_probs=155.5
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~ 67 (173)
T cd03230 1 IEVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKE 67 (173)
T ss_pred CEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccc
Confidence 46789988764 2469999999999999999999999999999999999999999999999998743
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.++|++|++.+++.+|+.||+. ||||||||
T Consensus 68 ~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~qr 103 (173)
T cd03230 68 PEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQR 103 (173)
T ss_pred hHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHHH
Confidence 34568999999999999899999863 89999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||+++ .+.+.+|++++|++|++
T Consensus 104 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 104 LALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999999999999999877999999999986 57788999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=377.43 Aligned_cols=230 Identities=29% Similarity=0.506 Sum_probs=189.6
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|++++++...... .++.+++.+|+|+||++++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.
T Consensus 274 ~~l~~~~l~~~~~~~~~~~--~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~ 350 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGIL--KRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLH 350 (529)
T ss_pred CcccccCcEEEeecCcccc--ccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcc
Confidence 3699999999875210000 000013579999999999999999999999999999999999985 8999999998874
Q ss_pred h-------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 010509 117 N-------QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTR 186 (508)
Q Consensus 117 ~-------~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 186 (508)
. ..++.++|++|++ .+++.+||.||+.+....+.. ..+..+.+++++++++.+||. +..++.+ +
T Consensus 351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 424 (529)
T PRK15134 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYP-----A 424 (529)
T ss_pred ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCC-----c
Confidence 2 1246799999996 488889999999886533211 123344556788999999997 4567665 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
+|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++ |+|||++|||+. .+.++||++++|++|+
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQGE 503 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEECCE
Confidence 89999999999999999999999999999999999999999999999875 899999999986 5778999999999999
Q ss_pred EEEEcChhhHH
Q 010509 266 PLYSGEASGAM 276 (508)
Q Consensus 266 iv~~G~~~~~~ 276 (508)
++..|+++++.
T Consensus 504 i~~~~~~~~~~ 514 (529)
T PRK15134 504 VVEQGDCERVF 514 (529)
T ss_pred EEEEcCHHHHh
Confidence 99999987763
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-43 Score=384.35 Aligned_cols=215 Identities=22% Similarity=0.363 Sum_probs=184.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++|+++. +++++|+|+|+++++||.+||+||||||||||+|+|+|+++|++|+|.+||+++++
T Consensus 341 ~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~ 409 (582)
T PRK11176 341 DIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRD 409 (582)
T ss_pred eEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhh
Confidence 5999999999752 13579999999999999999999999999999999999999999999999999854
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-------ECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~ 186 (508)
.+++.++||+|++.+++. |++||+.++. +...+++ +++++++..|+. +-.||.+|+ ..+
T Consensus 410 ~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~~~~~~----~i~~al~~~~l~~~i~~lp~Gldt~ig~-~g~ 479 (582)
T PRK11176 410 YTLASLRNQVALVSQNVHLFND-TIANNIAYAR----TEQYSRE----QIEEAARMAYAMDFINKMDNGLDTVIGE-NGV 479 (582)
T ss_pred cCHHHHHhhceEEccCceeecc-hHHHHHhcCC----CCCCCHH----HHHHHHHHhCcHHHHHhcccccCceeCC-CCC
Confidence 467889999999999985 9999998752 1122333 355566665543 445788874 356
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||||+++|++++||||||+||+.++..+++.|+++.+ ++|+|++||+++ ..+.||+|++|++|++
T Consensus 480 ~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~-~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i 556 (582)
T PRK11176 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEKADEILVVEDGEI 556 (582)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999999854 699999999985 4567999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
+..|+.++..
T Consensus 557 ~e~g~~~~l~ 566 (582)
T PRK11176 557 VERGTHAELL 566 (582)
T ss_pred EEeCCHHHHH
Confidence 9999988775
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=330.61 Aligned_cols=192 Identities=30% Similarity=0.483 Sum_probs=165.0
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC--CCCcccEEEECCEeCC
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGR--LGRINGRITYNGKPFS 116 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~--~~~~~G~I~~~G~~~~ 116 (508)
++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|. ..|++|+|.++|+++.
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~ 67 (200)
T cd03217 1 LEIKDLHVSVG-------------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDIT 67 (200)
T ss_pred CeEEEEEEEeC-------------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECC
Confidence 46789998864 35699999999999999999999999999999999998 4789999999999875
Q ss_pred h----h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 117 N----Q-MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 117 ~----~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
. . .++.++|++|++.+++..|+++++. . ..+.||||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~-----~~~~LS~G 108 (200)
T cd03217 68 DLPPEERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------Y-----VNEGFSGG 108 (200)
T ss_pred cCCHHHHhhCcEEEeecChhhccCccHHHHHh----------------------------------h-----ccccCCHH
Confidence 3 1 2345999999998888888877650 0 01379999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHh-hccEEEEEeCCeEEEEc
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYY-MFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~-~~D~v~lL~~G~iv~~G 270 (508)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+ .+|++++|++|+++..|
T Consensus 109 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~ 187 (200)
T cd03217 109 EKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSG 187 (200)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999877899999999987 4656 79999999999999999
Q ss_pred ChhhHHHHHHhcCC
Q 010509 271 EASGAMNYFASIGY 284 (508)
Q Consensus 271 ~~~~~~~~f~~~g~ 284 (508)
+.+ +.++|.+.||
T Consensus 188 ~~~-~~~~~~~~~~ 200 (200)
T cd03217 188 DKE-LALEIEKKGY 200 (200)
T ss_pred cHH-HHhhhccccC
Confidence 544 6566654443
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=329.95 Aligned_cols=194 Identities=26% Similarity=0.409 Sum_probs=167.8
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~ 67 (198)
T TIGR01189 1 LAARNLACSRG-------------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQ 67 (198)
T ss_pred CEEEEEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccc
Confidence 46789988764 3579999999999999999999999999999999999999999999999998643
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.++|++|++.+++.+|+.||+.+....+. . + +++++++++.+|+.+..++.++ .||||||||
T Consensus 68 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 135 (198)
T TIGR01189 68 RDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLPAA-----QLSAGQQRR 135 (198)
T ss_pred hHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCChh-----hcCHHHHHH
Confidence 345689999999989998999999987654321 1 1 2457889999999988777664 899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEE
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLL 260 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~l 260 (508)
++||++++.+|++++|||||+|||+.++..+.+.|++++++|.|||++||++.. ..+++++.
T Consensus 136 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 136 LALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 999999999999999999999999999999999999998789999999999864 23577654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=341.37 Aligned_cols=202 Identities=26% Similarity=0.407 Sum_probs=175.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.
T Consensus 4 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~---- 66 (251)
T PRK09544 4 LVSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK---- 66 (251)
T ss_pred EEEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc----
Confidence 589999999875 356999999999999999999999999999999999999999999999872
Q ss_pred hccccEEEEecCCCCCCCC--CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 QMTRNTGFVTQEDVLSPYL--TVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~l--Tv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++|++|++.+++.+ |+.+++.+. .... .+++.++++.+||.+..++.+ +.||||||||
T Consensus 67 ---~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~~----~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qr 128 (251)
T PRK09544 67 ---LRIGYVPQKLYLDTTLPLTVNRFLRLR------PGTK----KEDILPALKRVQAGHLIDAPM-----QKLSGGETQR 128 (251)
T ss_pred ---cCEEEeccccccccccChhHHHHHhcc------cccc----HHHHHHHHHHcCChHHHhCCh-----hhCCHHHHHH
Confidence 3699999998877764 677776431 1111 235678999999998877765 4899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|++++|++ +++..|++++
T Consensus 129 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~~-~i~~~g~~~~ 206 (251)
T PRK09544 129 VLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLNH-HICCSGTPEV 206 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEECC-ceEeeCCHHH
Confidence 99999999999999999999999999999999999999875 899999999986 57788999999965 7999999876
Q ss_pred HH
Q 010509 275 AM 276 (508)
Q Consensus 275 ~~ 276 (508)
..
T Consensus 207 ~~ 208 (251)
T PRK09544 207 VS 208 (251)
T ss_pred Hh
Confidence 53
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=374.93 Aligned_cols=215 Identities=24% Similarity=0.403 Sum_probs=183.0
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|+++.+ +.+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.
T Consensus 264 ~~l~~~~l~~~~---------------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~ 328 (510)
T PRK09700 264 TVFEVRNVTSRD---------------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDIS 328 (510)
T ss_pred cEEEEeCccccC---------------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECC
Confidence 368999998642 13899999999999999999999999999999999999999999999999874
Q ss_pred h-----hccccEEEEecC---CCCCCCCCHHHHHHHHHHhc---CCC--C-CCHHHHHHHHHHHHHHcCCC-cccccccC
Q 010509 117 N-----QMTRNTGFVTQE---DVLSPYLTVTETMVFTALLQ---LPN--S-FTEKEKIKCAEAVMTELGLS-ECKNSLIG 181 (508)
Q Consensus 117 ~-----~~~~~i~yv~Q~---~~l~~~lTv~E~l~~~~~l~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~~~~vg 181 (508)
+ ..++.++|++|+ ..+++.+||.||+.+....+ ... . ....+.+++++++++.+||. +..++.++
T Consensus 329 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 408 (510)
T PRK09700 329 PRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNIT 408 (510)
T ss_pred CCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccc
Confidence 2 234679999998 46889999999998753211 000 0 12233345678999999997 67777765
Q ss_pred CCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 182 ~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
+|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||+. .+.++||++++|
T Consensus 409 -----~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l 482 (510)
T PRK09700 409 -----ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVF 482 (510)
T ss_pred -----cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEE
Confidence 89999999999999999999999999999999999999999999999878999999999986 577899999999
Q ss_pred eCCeEEEEcCh
Q 010509 262 SEGYPLYSGEA 272 (508)
Q Consensus 262 ~~G~iv~~G~~ 272 (508)
++|+++..++.
T Consensus 483 ~~G~i~~~~~~ 493 (510)
T PRK09700 483 CEGRLTQILTN 493 (510)
T ss_pred ECCEEEEEecC
Confidence 99999988865
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=362.02 Aligned_cols=217 Identities=26% Similarity=0.422 Sum_probs=196.4
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
+..++++|++++++ ..++|+||||++++||++||+|.||||||||+|+|+|.++|++|+|.++|++.
T Consensus 6 ~~ll~~~~i~K~Fg-------------gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~ 72 (500)
T COG1129 6 PPLLELRGISKSFG-------------GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPV 72 (500)
T ss_pred cceeeeecceEEcC-------------CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEc
Confidence 34689999999976 57899999999999999999999999999999999999999999999999987
Q ss_pred Ch-----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccC
Q 010509 116 SN-----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP-NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVS 189 (508)
Q Consensus 116 ~~-----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 189 (508)
.. .....|+.|+|+..+.|+|||.||+.++...+.+ .-.+++..++++.++|+.+|+....+++++ +||
T Consensus 73 ~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~Ls 147 (500)
T COG1129 73 AFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DLS 147 (500)
T ss_pred cCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hCC
Confidence 42 3456799999999999999999999887554331 235677888899999999999655788886 899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
+||||.|.||+||..+++||+||||||.|+......+.+.+++|+++|.+||++||.++ ++++.|||+.+|.||+.+..
T Consensus 148 iaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRDG~~v~~ 226 (500)
T COG1129 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRDGRVVGT 226 (500)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeCCEEeee
Confidence 99999999999999999999999999999999999999999999999999999999986 69999999999999999988
Q ss_pred cC
Q 010509 270 GE 271 (508)
Q Consensus 270 G~ 271 (508)
++
T Consensus 227 ~~ 228 (500)
T COG1129 227 RP 228 (500)
T ss_pred cc
Confidence 87
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-42 Score=332.87 Aligned_cols=209 Identities=24% Similarity=0.379 Sum_probs=172.5
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEEC--CE--e
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYN--GK--P 114 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~--G~--~ 114 (508)
++++|++++++... +....+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++ |+ +
T Consensus 2 l~~~~l~~~~~~~~------~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~ 75 (224)
T TIGR02324 2 LEVEDLSKTFTLHQ------QGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVD 75 (224)
T ss_pred EEEEeeEEEeeccc------CCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccc
Confidence 78899999875210 00012479999999999999999999999999999999999999999999998 43 4
Q ss_pred CCh----h----ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCC
Q 010509 115 FSN----Q----MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC-KNSLIGGPLT 185 (508)
Q Consensus 115 ~~~----~----~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~ 185 (508)
+.. . .++.++|++|++.+++.+||.|++.+..... ....++..++++++++.+||.+. .++.+
T Consensus 76 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 147 (224)
T TIGR02324 76 LAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLPP----- 147 (224)
T ss_pred hhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCCc-----
Confidence 321 1 1357999999999999999999998764322 12334445678889999999763 45444
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+..++|+++.+.
T Consensus 148 ~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 148 ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 589999999999999999999999999999999999999999999999877999999999965 5667899998764
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=391.08 Aligned_cols=213 Identities=23% Similarity=0.387 Sum_probs=182.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++|+|+. .++++|+|+|+++++||.+||+||||||||||+|+|+|+++|++|+|.+||.++.+
T Consensus 477 ~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~ 545 (710)
T TIGR03796 477 YVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREE 545 (710)
T ss_pred eEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHH
Confidence 6999999999862 13579999999999999999999999999999999999999999999999999853
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-------CKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~ 186 (508)
.+|+.++||+|++.+++. |++||+.++. + ..+++ ++.++++..|+.+ -.||.+|+ ...
T Consensus 546 ~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~----~-~~~~~----~i~~al~~~~l~~~i~~lp~gl~t~i~e-~G~ 614 (710)
T TIGR03796 546 IPREVLANSVAMVDQDIFLFEG-TVRDNLTLWD----P-TIPDA----DLVRACKDAAIHDVITSRPGGYDAELAE-GGA 614 (710)
T ss_pred CCHHHHHhheeEEecCChhhhc-cHHHHhhCCC----C-CCCHH----HHHHHHHHhCCHHHHHhCcCcccceecc-CCC
Confidence 578899999999999975 9999998642 1 22333 3445566656543 45677763 457
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+||||||||++|||||+++|++|+||||||+||+.+..++.+.|++ .++|+|++||+++. + ..+|||++|++|++
T Consensus 615 ~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~-i-~~~D~Iivl~~G~i 689 (710)
T TIGR03796 615 NLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLST-I-RDCDEIIVLERGKV 689 (710)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHH-H-HhCCEEEEEeCCEE
Confidence 8999999999999999999999999999999999999999999986 48999999999863 4 56999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
+..|+.+++.+
T Consensus 690 ~~~G~~~~Ll~ 700 (710)
T TIGR03796 690 VQRGTHEELWA 700 (710)
T ss_pred EEecCHHHHHH
Confidence 99999988764
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=380.05 Aligned_cols=212 Identities=22% Similarity=0.372 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+++.++. ++++|+|+|+++++||.+||+|+||||||||+|+|+|+++|++|+|.+||+++++
T Consensus 340 ~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~ 407 (592)
T PRK10790 340 RIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSS 407 (592)
T ss_pred eEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhh
Confidence 5999999999751 2469999999999999999999999999999999999999999999999998854
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-------CKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~ 186 (508)
.++++++||+|++.+|+. |++||+.++. ..++ ++++++++.+|+.+ -.||.+|. ...
T Consensus 408 ~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~ 475 (592)
T PRK10790 408 LSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DISE----EQVWQALETVQLAELARSLPDGLYTPLGE-QGN 475 (592)
T ss_pred CCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCCH----HHHHHHHHHcCcHHHHHhccccccccccC-CCC
Confidence 568899999999999986 9999998852 1222 34666777777653 34677763 456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||||+.+|+|++||||||+||+.+..++.+.|+++.+ ++|+|++||+++ ....+|+|++|++|++
T Consensus 476 ~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G~i 552 (592)
T PRK10790 476 NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHRGQA 552 (592)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEE
Confidence 7999999999999999999999999999999999999999999999865 699999999985 3456999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
+..|+.++..
T Consensus 553 ~~~G~~~~L~ 562 (592)
T PRK10790 553 VEQGTHQQLL 562 (592)
T ss_pred EEEcCHHHHH
Confidence 9999998875
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=330.53 Aligned_cols=198 Identities=25% Similarity=0.392 Sum_probs=171.1
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 68 (207)
T PRK13539 2 MLEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD 68 (207)
T ss_pred EEEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc
Confidence 589999999875 3569999999999999999999999999999999999999999999999987642
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH
Q 010509 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 -~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 196 (508)
..++.++|++|++.+++.+|++||+.+..... ... .++++++++.+||.+..++.+ +.||||||||+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 136 (207)
T PRK13539 69 PDVAEACHYLGHRNAMKPALTVAENLEFWAAFL---GGE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRRV 136 (207)
T ss_pred hhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc---CCc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHHH
Confidence 25667999999998888999999998765332 111 234788999999987766655 48999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
+||++|+.+|++++|||||+|||+.++.++.+.|++++++|+|||++||++.. +.. |+++.+..
T Consensus 137 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~--~~~~~~~~ 200 (207)
T PRK13539 137 ALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLG-LPG--ARELDLGP 200 (207)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchh-hcc--CcEEeecC
Confidence 99999999999999999999999999999999999998789999999999863 544 88877743
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=377.91 Aligned_cols=216 Identities=30% Similarity=0.557 Sum_probs=186.5
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|++++|+.. ++.+|+|+|++++|||.+||+||||||||||+|+|+|.++|++|+|.+||+++.
T Consensus 337 ~~i~~~~v~f~y~~~-----------~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~ 405 (574)
T PRK11160 337 VSLTLNNVSFTYPDQ-----------PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIA 405 (574)
T ss_pred CeEEEEEEEEECCCC-----------CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhh
Confidence 369999999997521 246999999999999999999999999999999999999999999999999875
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc------cccccCCCCCC
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC------KNSLIGGPLTR 186 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~------~~~~vg~~~~~ 186 (508)
+ .+++.++||+|++.+++. |++||+.++. + ..++ +.++++++..++.+. .||.+|. ...
T Consensus 406 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~----~-~~~~----~~i~~al~~~~l~~~i~~p~GldT~vge-~g~ 474 (574)
T PRK11160 406 DYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAA----P-NASD----EALIEVLQQVGLEKLLEDDKGLNAWLGE-GGR 474 (574)
T ss_pred hCCHHHHHhheeEEcccchhhcc-cHHHHhhcCC----C-ccCH----HHHHHHHHHcCCHHHHcCccccCchhcC-CCC
Confidence 4 567889999999999975 9999998753 1 1222 346778888888654 4677763 456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||+|+++|++|+||||||+||+.++..+.+.|+++. +++|+|+++|+++. + ..+|++++|++|++
T Consensus 475 ~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~-~-~~~d~i~~l~~G~i 551 (574)
T PRK11160 475 QLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG-L-EQFDRICVMDNGQI 551 (574)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH-H-HhCCEEEEEeCCeE
Confidence 899999999999999999999999999999999999999999999986 48999999999964 4 56999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
+..|+.++..+
T Consensus 552 ~~~g~~~~l~~ 562 (574)
T PRK11160 552 IEQGTHQELLA 562 (574)
T ss_pred EEeCCHHHHHh
Confidence 99999887653
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=344.86 Aligned_cols=214 Identities=21% Similarity=0.332 Sum_probs=181.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++|+++.+.. +...+|+|+|++|++||+++|+||||||||||+++|+|+++ .+|+|.++|.++..
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~ 69 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNS 69 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhh
Confidence 4789999999851 13469999999999999999999999999999999999987 79999999998743
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCC------CCCCc
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGG------PLTRG 187 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~------~~~~~ 187 (508)
..++.++|++|++.+++. |++||+.... ..+. +++.+.++.+||.+..++.++. ...+.
T Consensus 70 ~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~------~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~ 138 (275)
T cd03289 70 VPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYG------KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCV 138 (275)
T ss_pred CCHHHHhhhEEEECCCcccchh-hHHHHhhhcc------CCCH----HHHHHHHHHcCCHHHHHhCcccccceecCCCCC
Confidence 456789999999999985 9999996421 1122 3456788889998766655431 12345
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
||||||||++|||||+.+|+|++|||||++||+.+...+.+.|+++. +++|||+++|+++ .+. .+||+++|++|+++
T Consensus 139 LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~-~~dri~vl~~G~i~ 215 (275)
T cd03289 139 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AML-ECQRFLVIEENKVR 215 (275)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HHH-hCCEEEEecCCeEe
Confidence 99999999999999999999999999999999999999999999875 4899999999985 454 49999999999999
Q ss_pred EEcChhhHHH
Q 010509 268 YSGEASGAMN 277 (508)
Q Consensus 268 ~~G~~~~~~~ 277 (508)
+.|+++++..
T Consensus 216 ~~g~~~~l~~ 225 (275)
T cd03289 216 QYDSIQKLLN 225 (275)
T ss_pred ecCCHHHHhh
Confidence 9999998754
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=373.50 Aligned_cols=208 Identities=22% Similarity=0.302 Sum_probs=181.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++|++++++ ++++|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~ 69 (490)
T PRK10938 3 SLQISQGTFRLS-------------DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITR 69 (490)
T ss_pred eEEEEeEEEEcC-------------CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCccccc
Confidence 589999999875 3469999999999999999999999999999999999999999999999976532
Q ss_pred ----hccccEEEEecCCCC--C-C-----CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVL--S-P-----YLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT 185 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l--~-~-----~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 185 (508)
..++.++|++|++.. + + .+|++|++.+. .+.+++++++++.+||.+..++.++
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~---- 134 (490)
T PRK10938 70 LSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRFK---- 134 (490)
T ss_pred CCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCcc----
Confidence 234569999998643 1 1 46888876431 1234568899999999988887765
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||++. .+.+.||++++|++|+
T Consensus 135 -~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~G~ 212 (490)
T PRK10938 135 -YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLADCT 212 (490)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999999888999999999986 5778999999999999
Q ss_pred EEEEcChhhH
Q 010509 266 PLYSGEASGA 275 (508)
Q Consensus 266 iv~~G~~~~~ 275 (508)
++..|++++.
T Consensus 213 i~~~~~~~~~ 222 (490)
T PRK10938 213 LAETGEREEI 222 (490)
T ss_pred EEEeCCHHHH
Confidence 9999998765
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=338.70 Aligned_cols=210 Identities=27% Similarity=0.454 Sum_probs=171.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|+++.++.. +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 11 ~l~~~~l~~~~~~~----------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~ 80 (226)
T cd03248 11 IVKFQNVTFAYPTR----------PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQ 80 (226)
T ss_pred eEEEEEEEEEeCCC----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHH
Confidence 69999999997521 12469999999999999999999999999999999999999999999999987642
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc--CCCcccccccCCCCCCccCHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTEL--GLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSGG 191 (508)
..++.++|++|++.+++ .|++||+.+...........+......++++++.+ |+.+..++.+ ++||||
T Consensus 81 ~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~-----~~LSgG 154 (226)
T cd03248 81 YEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKG-----SQLSGG 154 (226)
T ss_pred cCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCC-----CcCCHH
Confidence 34567999999998876 59999998753211000000011112356788888 7776666554 589999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
|||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++. +. .+|++++|++|++
T Consensus 155 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~-~~d~i~~l~~g~i 226 (226)
T cd03248 155 QKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLST-VE-RADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHH-HH-hCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999999875 6899999999874 54 4999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-42 Score=325.93 Aligned_cols=177 Identities=34% Similarity=0.546 Sum_probs=154.8
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh------hccccEEEEecCCC--CCC
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN------QMTRNTGFVTQEDV--LSP 134 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~------~~~~~i~yv~Q~~~--l~~ 134 (508)
++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..++.++|++|++. ++
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~- 82 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF- 82 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc-
Confidence 4579999999999999999999999999999999999999999999999998731 23567999999973 44
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 010509 135 YLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEP 214 (508)
Q Consensus 135 ~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEP 214 (508)
..||+||+.+..... ..+.++..++++++++.+||.+..++.+. +||||||||++||++|+.+|++++||||
T Consensus 83 ~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 83 AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPTH-----CLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 479999999865432 22344455678899999999887777664 8999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcc
Q 010509 215 TSGLDSTIAQQILSILLKLANGGRTIVMTIHQPS 248 (508)
Q Consensus 215 tsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~ 248 (508)
|+|||+.++..+.+.|++++++|+|||++||+++
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 9999999999999999999877999999999985
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=372.39 Aligned_cols=221 Identities=22% Similarity=0.365 Sum_probs=185.6
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-cccEEEECCEeC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-INGRITYNGKPF 115 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-~~G~I~~~G~~~ 115 (508)
..|+++|+++++... +++.+|+|+||++++||+++|+||||||||||||+|+|+.+| ++|+|.++|+++
T Consensus 256 ~~l~~~~l~~~~~~~----------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~ 325 (500)
T TIGR02633 256 VILEARNLTCWDVIN----------PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPV 325 (500)
T ss_pred ceEEEeCCccccccc----------ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEEC
Confidence 368999998865210 124699999999999999999999999999999999999985 899999999987
Q ss_pred Ch-----hccccEEEEecCC---CCCCCCCHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCC
Q 010509 116 SN-----QMTRNTGFVTQED---VLSPYLTVTETMVFTALLQLP--NSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPL 184 (508)
Q Consensus 116 ~~-----~~~~~i~yv~Q~~---~l~~~lTv~E~l~~~~~l~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~ 184 (508)
.. ..++.++|++|+. .+++.+||+||+.+....... ......+.+++++++++.+++.+ ..++.++
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 402 (500)
T TIGR02633 326 DIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIG--- 402 (500)
T ss_pred CCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccc---
Confidence 42 2356799999995 588999999999875321111 01223344567889999999974 5676664
Q ss_pred CCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|.|||++|||++ .+.++||++++|++|
T Consensus 403 --~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~G 479 (500)
T TIGR02633 403 --RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGEG 479 (500)
T ss_pred --cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECC
Confidence 89999999999999999999999999999999999999999999999888999999999986 577899999999999
Q ss_pred eEEEEcChh
Q 010509 265 YPLYSGEAS 273 (508)
Q Consensus 265 ~iv~~G~~~ 273 (508)
+++..++.+
T Consensus 480 ~i~~~~~~~ 488 (500)
T TIGR02633 480 KLKGDFVNH 488 (500)
T ss_pred EEEEEEccc
Confidence 999887654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=332.97 Aligned_cols=208 Identities=21% Similarity=0.346 Sum_probs=172.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++. ..+.+|+|+||++++||+++|+||||||||||+++|+|..+|++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 70 (221)
T cd03244 2 DIEFKNVSLRYRP-----------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISK 70 (221)
T ss_pred cEEEEEEEEecCC-----------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHh
Confidence 3789999998751 12469999999999999999999999999999999999999999999999998743
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccc-------ccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNS-------LIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-------~vg~~~~~ 186 (508)
..++.++|++|++.+++ .|++||+.+.. .... +++.+.++.+++.+..++ .. +..++
T Consensus 71 ~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~------~~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~~ 138 (221)
T cd03244 71 IGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFG------EYSD----EELWQALERVGLKEFVESLPGGLDTVV-EEGGE 138 (221)
T ss_pred CCHHHHhhhEEEECCCCcccc-chHHHHhCcCC------CCCH----HHHHHHHHHhCcHHHHHhccccccccc-ccCCC
Confidence 45678999999998776 59999986431 1121 235556677776554332 11 13456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++.. +.. +|++++|++|++
T Consensus 139 ~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~~-~d~i~~l~~g~~ 215 (221)
T cd03244 139 NLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDT-IID-SDRILVLDKGRV 215 (221)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-Hhh-CCEEEEEECCeE
Confidence 9999999999999999999999999999999999999999999999865 6899999999864 544 899999999999
Q ss_pred EEEcC
Q 010509 267 LYSGE 271 (508)
Q Consensus 267 v~~G~ 271 (508)
++.|+
T Consensus 216 ~~~~~ 220 (221)
T cd03244 216 VEFDS 220 (221)
T ss_pred EecCC
Confidence 98876
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=386.23 Aligned_cols=216 Identities=25% Similarity=0.475 Sum_probs=185.1
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++|+. ..+++|+|+|+++++||.+||+||||||||||+|+|+|+++|++|+|.+||+++.+
T Consensus 463 ~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~ 531 (694)
T TIGR03375 463 EIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQ 531 (694)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhh
Confidence 5999999999852 13569999999999999999999999999999999999999999999999999854
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-------ECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~ 186 (508)
.+|+.++||+|++.+++. |++||+.++. + ..+++ ++.++++..|+. +-.||.+|+ ...
T Consensus 532 ~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~----~-~~~~~----~i~~a~~~~~l~~~i~~lp~gl~T~i~e-~G~ 600 (694)
T TIGR03375 532 IDPADLRRNIGYVPQDPRLFYG-TLRDNIALGA----P-YADDE----EILRAAELAGVTEFVRRHPDGLDMQIGE-RGR 600 (694)
T ss_pred CCHHHHHhccEEECCChhhhhh-hHHHHHhCCC----C-CCCHH----HHHHHHHHcChHHHHHhCcccccceecC-CCC
Confidence 568899999999999985 9999998752 1 22333 344555555543 345778874 456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||||+++|++++||||||+||+.+..++.+.|+++.+ ++|+|++||+++ ..+.||+|++|++|++
T Consensus 601 ~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl~~G~i 677 (694)
T TIGR03375 601 SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMDNGRI 677 (694)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEeCCEE
Confidence 8999999999999999999999999999999999999999999999864 799999999986 3467999999999999
Q ss_pred EEEcChhhHHHH
Q 010509 267 LYSGEASGAMNY 278 (508)
Q Consensus 267 v~~G~~~~~~~~ 278 (508)
++.|+.++..+.
T Consensus 678 ~e~G~~~eLl~~ 689 (694)
T TIGR03375 678 VADGPKDQVLEA 689 (694)
T ss_pred EeeCCHHHHHHH
Confidence 999998887654
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=322.53 Aligned_cols=171 Identities=32% Similarity=0.582 Sum_probs=155.3
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ ++.+++|+|+++++||+++|+||||||||||+++|+|.++|++|+|.++|+++..
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~ 67 (178)
T cd03229 1 LELKNVSKRYG-------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDL 67 (178)
T ss_pred CEEEEEEEEEC-------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccc
Confidence 46789988864 3569999999999999999999999999999999999999999999999988642
Q ss_pred -----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 -----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 -----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
..++.++|++|++.+++.+|++|++.+. |||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G~ 105 (178)
T cd03229 68 EDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGGQ 105 (178)
T ss_pred chhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHHH
Confidence 3456899999999999889999987532 89999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
|||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++. .+.+.+|++++|++|+
T Consensus 106 ~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 106 QQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence 99999999999999999999999999999999999999999887 899999999986 5777899999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=388.04 Aligned_cols=214 Identities=23% Similarity=0.365 Sum_probs=182.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++|+|+. ++++|+|+|+++++||.+||+||||||||||+++|+|++.|++|+|++||.++.+
T Consensus 473 ~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~ 540 (708)
T TIGR01193 473 DIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKD 540 (708)
T ss_pred cEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHH
Confidence 5999999999751 3569999999999999999999999999999999999999999999999998753
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-------ECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~ 186 (508)
.+|+.+|||+|++.+++. |++||+.++.. + ..+++ ++.++++..|+. +-.||.+|+ ...
T Consensus 541 ~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~---~-~~~~~----~i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~ 610 (708)
T TIGR01193 541 IDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK---E-NVSQD----EIWAACEIAEIKDDIENMPLGYQTELSE-EGS 610 (708)
T ss_pred cCHHHHHHheEEEecCceehhH-HHHHHHhccCC---C-CCCHH----HHHHHHHHhCCHHHHHhcccccCcEecC-CCC
Confidence 578899999999999976 99999987531 1 22333 344555555543 345778873 456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+||||||||++|||||+++|++|+||||||+||+.+...+.+.|+++ +|+|+|+++|+++ ..+.+|++++|++|++
T Consensus 611 ~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~G~i 686 (708)
T TIGR01193 611 SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDHGKI 686 (708)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEECCEE
Confidence 89999999999999999999999999999999999999999999985 4799999999986 3467999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
+..|+.++..+
T Consensus 687 ~~~G~~~~L~~ 697 (708)
T TIGR01193 687 IEQGSHDELLD 697 (708)
T ss_pred EEECCHHHHHh
Confidence 99999887754
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-42 Score=327.14 Aligned_cols=192 Identities=22% Similarity=0.358 Sum_probs=167.1
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
|+++|++++++ ++++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~ 68 (200)
T PRK13540 2 LDVIELDFDYH-------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKD 68 (200)
T ss_pred EEEEEEEEEeC-------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccC
Confidence 78899999875 3569999999999999999999999999999999999999999999999998742
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.++|++|+..+++.+||+||+.+.... . .. ...++++++.+++.+..++.++ +||||||||
T Consensus 69 ~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~--~----~~--~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~r 135 (200)
T PRK13540 69 LCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF--S----PG--AVGITELCRLFSLEHLIDYPCG-----LLSSGQKRQ 135 (200)
T ss_pred HHHHHhheEEeccccccCcCCCHHHHHHHHHhc--C----cc--hHHHHHHHHHcCCchhhhCChh-----hcCHHHHHH
Confidence 3567899999999888899999999876421 1 11 2367889999999877776654 899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEE
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKV 258 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v 258 (508)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||++.. + +.+|..
T Consensus 136 v~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-~-~~~d~~ 196 (200)
T PRK13540 136 VALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP-L-NKADYE 196 (200)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh-c-cccchh
Confidence 999999999999999999999999999999999999997779999999999763 3 456654
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=379.41 Aligned_cols=217 Identities=28% Similarity=0.480 Sum_probs=187.2
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|+++.|+. ++++|+|+|++++|||.+||+||||||||||++.|.|+++|++|+|.+||+++.
T Consensus 327 ~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~ 394 (567)
T COG1132 327 GSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIR 394 (567)
T ss_pred CeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehh
Confidence 35999999999861 468999999999999999999999999999999999999999999999999986
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH-----HHHcCCCcccccccCCCCCCc
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAV-----MTELGLSECKNSLIGGPLTRG 187 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~-----l~~lgL~~~~~~~vg~~~~~~ 187 (508)
. .+|+.++||+|++.+|. -||+||+.++.. ..++++..+.++.+ ++ .+.+..||.+| +....
T Consensus 395 ~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~-----~at~eei~~a~k~a~~~d~I~--~lp~g~dt~vg-e~G~~ 465 (567)
T COG1132 395 DISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP-----DATDEEIEEALKLANAHEFIA--NLPDGYDTIVG-ERGVN 465 (567)
T ss_pred hcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCcccccceec-CCCcc
Confidence 4 57889999999999998 699999998642 23444443333322 33 33556799998 55678
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
||||||||++||||++.+|+||+||||||+||+.+...+.+.++++. +|+|+|+++|+++. +.+ +|+|++|++|+++
T Consensus 466 LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst-i~~-aD~IiVl~~G~i~ 542 (567)
T COG1132 466 LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST-IKN-ADRIIVLDNGRIV 542 (567)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH-HHh-CCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999887 56899999999964 544 9999999999999
Q ss_pred EEcChhhHHH
Q 010509 268 YSGEASGAMN 277 (508)
Q Consensus 268 ~~G~~~~~~~ 277 (508)
+.|+.++...
T Consensus 543 e~G~h~eLl~ 552 (567)
T COG1132 543 ERGTHEELLA 552 (567)
T ss_pred EecCHHHHHH
Confidence 9999998865
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=384.91 Aligned_cols=214 Identities=26% Similarity=0.446 Sum_probs=180.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++|+.. +++++|+|+|++++|||.+||+||||||||||+|+|+|+++|++|+|.+||+++++
T Consensus 478 ~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~ 547 (711)
T TIGR00958 478 LIEFQDVSFSYPNR----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQ 547 (711)
T ss_pred eEEEEEEEEECCCC----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHh
Confidence 59999999998621 13579999999999999999999999999999999999999999999999999853
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-------CKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~ 186 (508)
..+++++||+|++.+++ -|++||+.++. + ..++ +.+.++++..++.+ -.||.+|+ ...
T Consensus 548 ~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~----~-~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~ 616 (711)
T TIGR00958 548 YDHHYLHRQVALVGQEPVLFS-GSVRENIAYGL----T-DTPD----EEIMAAAKAANAHDFIMEFPNGYDTEVGE-KGS 616 (711)
T ss_pred cCHHHHHhhceEEecCccccc-cCHHHHHhcCC----C-CCCH----HHHHHHHHHcCCHHHHHhCCCccCCcccC-CCC
Confidence 46789999999999997 49999998753 1 1232 33556666666543 35777773 456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||||+++|+|++||||||+||+.+...+.+ .. ..+++|+|+++|+++. .+.+|+|++|++|++
T Consensus 617 ~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~--i~~aD~IivL~~G~i 691 (711)
T TIGR00958 617 QLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLST--VERADQILVLKKGSV 691 (711)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHH--HHhCCEEEEEECCEE
Confidence 899999999999999999999999999999999999999988 22 2358999999999863 466999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
+..|+.++..+
T Consensus 692 ve~Gt~~eL~~ 702 (711)
T TIGR00958 692 VEMGTHKQLME 702 (711)
T ss_pred EEeeCHHHHHh
Confidence 99999988754
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=308.81 Aligned_cols=215 Identities=30% Similarity=0.464 Sum_probs=193.1
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC-
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS- 116 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~- 116 (508)
.|+++++++.|+ ..++|.|++++.++||.+.++||||||||||+|.|.=+..|.+|+..+.|...+
T Consensus 2 sirv~~in~~yg-------------~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~ 68 (242)
T COG4161 2 SIQLNGINCFYG-------------AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDF 68 (242)
T ss_pred ceEEcccccccc-------------cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEeccccccc
Confidence 477888888765 467999999999999999999999999999999999888899999999886432
Q ss_pred ------h---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCc
Q 010509 117 ------N---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRG 187 (508)
Q Consensus 117 ------~---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 187 (508)
+ ..|+.+|+|+|+..+.|.+||.||+.-+- .+. .+.++++.+.++.++|+.+.|.+.+|+.. -.
T Consensus 69 s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~p-----lh 141 (242)
T COG4161 69 SKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRYP-----LH 141 (242)
T ss_pred ccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccCc-----ee
Confidence 1 46789999999999999999999997643 332 24678888999999999999999998765 48
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
|||||+|||+|||||+.+|++|++||||+.|||.-..++++++++|+..|.|=+++||..+ ...+.+.||+.|.+|+|+
T Consensus 142 lsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~-va~k~as~vvyme~g~iv 220 (242)
T COG4161 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE-VARKTASRVVYMENGHIV 220 (242)
T ss_pred cccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh-HHHhhhhheEeeecCeeE
Confidence 9999999999999999999999999999999999999999999999999999999999986 678899999999999999
Q ss_pred EEcChh
Q 010509 268 YSGEAS 273 (508)
Q Consensus 268 ~~G~~~ 273 (508)
..|+.+
T Consensus 221 e~g~a~ 226 (242)
T COG4161 221 EQGDAS 226 (242)
T ss_pred eecchh
Confidence 999865
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=357.59 Aligned_cols=215 Identities=28% Similarity=0.490 Sum_probs=185.5
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
+-.++|+|++++|.. +++||+++||+|++||-+||+|+|||||||++|+|.+... .+|+|++||+++
T Consensus 349 ~~~I~F~dV~f~y~~------------k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~di 415 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYGP------------KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDI 415 (591)
T ss_pred CCcEEEEeeEEEeCC------------CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeH
Confidence 345999999999861 4569999999999999999999999999999999999988 999999999998
Q ss_pred Ch----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CcccccccCCCC
Q 010509 116 SN----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGL-------SECKNSLIGGPL 184 (508)
Q Consensus 116 ~~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~ 184 (508)
.+ ..|+.|||||||..||.+ ||.+|+.++.. +.+.++ |-++.+..|+ ++-.+|.+| +.
T Consensus 416 k~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~-----sas~ee----V~e~~k~a~~hd~i~~l~~GY~T~VG-er 484 (591)
T KOG0057|consen 416 KEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNP-----SASDEE----VVEACKRAGLHDVISRLPDGYQTLVG-ER 484 (591)
T ss_pred hhhChHHhhhheeEeCCcccccch-hHHHHhhcCCC-----CcCHHH----HHHHHHHcCcHHHHHhccccchhhHh-hc
Confidence 54 578899999999999986 99999998742 234443 3344455554 445677787 45
Q ss_pred CCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
...|||||||||+||||++.||+|+++|||||.||+.+..++++.+.+ ...|+|+|++.|+.+ ...-||+|++|++|
T Consensus 485 G~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~--ll~~~DkI~~l~nG 561 (591)
T KOG0057|consen 485 GLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLD--LLKDFDKIIVLDNG 561 (591)
T ss_pred ccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecch--hHhcCCEEEEEECC
Confidence 568999999999999999999999999999999999999999999999 346899999999986 45679999999999
Q ss_pred eEEEEcChhhHHH
Q 010509 265 YPLYSGEASGAMN 277 (508)
Q Consensus 265 ~iv~~G~~~~~~~ 277 (508)
++...|+-+++..
T Consensus 562 ~v~e~gth~ell~ 574 (591)
T KOG0057|consen 562 TVKEYGTHSELLA 574 (591)
T ss_pred eeEEeccHHHHhh
Confidence 9999999998876
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=337.98 Aligned_cols=214 Identities=20% Similarity=0.330 Sum_probs=172.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++. ..+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++..
T Consensus 19 ~i~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~ 87 (257)
T cd03288 19 EIKIHDLCVRYEN-----------NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISK 87 (257)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhh
Confidence 5999999998751 12469999999999999999999999999999999999999999999999998743
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHH-----HHHHHHHHHc--CCCcccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKI-----KCAEAVMTEL--GLSECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~ 186 (508)
..++.++|++|++.+++ .|++||+.... ........ ..+++.++.+ |++...+ ...+
T Consensus 88 ~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~-----~~~~ 155 (257)
T cd03288 88 LPLHTLRSRLSIILQDPILFS-GSIRFNLDPEC------KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVT-----EGGE 155 (257)
T ss_pred CCHHHHhhhEEEECCCCcccc-cHHHHhcCcCC------CCCHHHHHHHHHHhCcHHHHhhcccccCcEec-----cCCC
Confidence 34678999999998887 49999875321 11111111 0122333333 3333322 2346
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||++||+++. +.. +||+++|++|++
T Consensus 156 ~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~-~~~-~dri~~l~~G~i 232 (257)
T cd03288 156 NFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVST-ILD-ADLVLVLSRGIL 232 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHH-HHh-CCEEEEEECCEE
Confidence 899999999999999999999999999999999999999999999975 48999999999974 544 999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
+..|++++..+
T Consensus 233 ~~~g~~~~~~~ 243 (257)
T cd03288 233 VECDTPENLLA 243 (257)
T ss_pred EEeCCHHHHHh
Confidence 99999887643
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=356.21 Aligned_cols=214 Identities=22% Similarity=0.308 Sum_probs=181.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++||++.+... ..+.+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~----------~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~-- 88 (549)
T PRK13545 21 FDKLKDLFFRSKDG----------EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA-- 88 (549)
T ss_pred eeEEEEEEEecCCC----------ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee--
Confidence 57777777765411 125699999999999999999999999999999999999999999999999752
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVS 197 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 197 (508)
++.+...+.+.+|++|++.+..... ..+.++..++++++++.+||.+..++.++ +||||||||++
T Consensus 89 -------~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~~-----~LSGGQrQRVa 153 (549)
T PRK13545 89 -------LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPVK-----TYSSGMKSRLG 153 (549)
T ss_pred -------eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCcc-----cCCHHHHHHHH
Confidence 2233445677799999998754332 23344555678889999999888777664 89999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHHH
Q 010509 198 IGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMN 277 (508)
Q Consensus 198 Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~ 277 (508)
||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+.++||++++|++|++++.|+++++..
T Consensus 154 LArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 154 FAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999999878999999999986 5778999999999999999999988765
Q ss_pred HH
Q 010509 278 YF 279 (508)
Q Consensus 278 ~f 279 (508)
-+
T Consensus 233 ~~ 234 (549)
T PRK13545 233 HY 234 (549)
T ss_pred hH
Confidence 44
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=318.25 Aligned_cols=169 Identities=31% Similarity=0.577 Sum_probs=152.0
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++. .++.+++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~ 69 (173)
T cd03246 1 LEVENVSFRYPG-----------AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQW 69 (173)
T ss_pred CEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccC
Confidence 467899988641 12469999999999999999999999999999999999999999999999998743
Q ss_pred ---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHH
Q 010509 118 ---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 118 ---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 194 (508)
..++.++|++|++.+++. |++||+ |||||||
T Consensus 70 ~~~~~~~~i~~~~q~~~~~~~-tv~~~l---------------------------------------------LS~G~~q 103 (173)
T cd03246 70 DPNELGDHVGYLPQDDELFSG-SIAENI---------------------------------------------LSGGQRQ 103 (173)
T ss_pred CHHHHHhheEEECCCCccccC-cHHHHC---------------------------------------------cCHHHHH
Confidence 346789999999988874 999886 8999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+ ..+|++++|++|++
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 999999999999999999999999999999999999999877999999999986 45 57999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=367.75 Aligned_cols=204 Identities=23% Similarity=0.403 Sum_probs=176.8
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-----hccccEEEEecCC---CCCCCCC
Q 010509 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN-----QMTRNTGFVTQED---VLSPYLT 137 (508)
Q Consensus 66 iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~-----~~~~~i~yv~Q~~---~l~~~lT 137 (508)
+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ..++.+|||+|++ .+++.+|
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t 346 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMS 346 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCc
Confidence 6999999999999999999999999999999999999999999999998742 2346799999995 5788999
Q ss_pred HHHHHHHHHHhcCC---CCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeC
Q 010509 138 VTETMVFTALLQLP---NSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDE 213 (508)
Q Consensus 138 v~E~l~~~~~l~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDE 213 (508)
|.|++.+....... ...+.++.+++++++++.+||. +..++.++ .|||||||||+||++|+.+|++|+|||
T Consensus 347 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqrv~lA~al~~~p~lllLDE 421 (501)
T PRK10762 347 VKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIG-----LLSGGNQQKVAIARGLMTRPKVLILDE 421 (501)
T ss_pred HHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchh-----hCCHHHHHHHHHHHHHhhCCCEEEEcC
Confidence 99999875321110 0122334456788999999995 66777665 899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 214 PTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 214 PtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
||+|||+.++..+.+.|++++++|.|||++|||+. .+.++||++++|++|+++..|+++++
T Consensus 422 Pt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 422 PTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred CCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEeccccC
Confidence 99999999999999999999878999999999986 57789999999999999999988765
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=318.50 Aligned_cols=175 Identities=31% Similarity=0.567 Sum_probs=155.0
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|+++.++.. .+.+++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 i~~~~~~~~~~~~-----------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~ 69 (178)
T cd03247 1 LSINNVSFSYPEQ-----------EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL 69 (178)
T ss_pred CEEEEEEEEeCCC-----------CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH
Confidence 4678999887510 1369999999999999999999999999999999999999999999999997642
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.++|++|++.+++ .|++||+ +..||||||||
T Consensus 70 ~~~~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~qr 106 (178)
T cd03247 70 EKALSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGERQR 106 (178)
T ss_pred HHHHHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHHHH
Confidence 34667999999998876 6998886 13799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
++|||+|+.+|++++|||||+|||+.++..+++.|++++ ++.|||++||++.. +. .+|++++|++|++++.|
T Consensus 107 v~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~~-~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 107 LALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTG-IE-HMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-HH-hCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999996 48999999999874 54 69999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=330.09 Aligned_cols=197 Identities=28% Similarity=0.449 Sum_probs=167.3
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCC--CCCHHHHHHHHHHhc
Q 010509 72 GMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSP--YLTVTETMVFTALLQ 149 (508)
Q Consensus 72 ~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~--~lTv~E~l~~~~~l~ 149 (508)
+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .++.++|++|++.+++ .+|+.||+.+.....
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 79 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGK-GWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGH 79 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchH-hhCcEEEecccccccCCCCccHHHHHHhccccc
Confidence 4689999999999999999999999999999999999999998643 4567999999987643 479999998753211
Q ss_pred CC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 010509 150 LP-NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILS 228 (508)
Q Consensus 150 ~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~ 228 (508)
.. ......+.+++++++++.+|+.+..++.++ +||||||||++||++|+.+|+++++||||+|||+.++..+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~ 154 (223)
T TIGR03771 80 IGWLRRPCVADFAAVRDALRRVGLTELADRPVG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTE 154 (223)
T ss_pred cccccCCcHHHHHHHHHHHHHhCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 00 001122334568899999999887777664 899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHH
Q 010509 229 ILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 229 ~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~ 276 (508)
.|++++++|+|+|++||+++ .+.+.+|+++++ +|++++.|++++..
T Consensus 155 ~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 155 LFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 99999877999999999986 577899999999 89999999987653
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=374.09 Aligned_cols=213 Identities=27% Similarity=0.462 Sum_probs=181.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++. ++.+|+|+|++++|||.++|+|+||||||||+|+|+|+++|.+|+|.+||+++.+
T Consensus 334 ~I~~~~vsf~y~~------------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~ 401 (588)
T PRK13657 334 AVEFDDVSFSYDN------------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRT 401 (588)
T ss_pred eEEEEEEEEEeCC------------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhh
Confidence 5999999999851 2469999999999999999999999999999999999999999999999998854
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-------ECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~ 186 (508)
..++.++||+|++.+++. |++||+.++. + +.++++ +.++++..|+. +-.||.+|. ..+
T Consensus 402 ~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~-~~~d~~----i~~al~~~~l~~~i~~lp~gldt~i~~-~g~ 470 (588)
T PRK13657 402 VTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGR----P-DATDEE----MRAAAERAQAHDFIERKPDGYDTVVGE-RGR 470 (588)
T ss_pred CCHHHHHhheEEEecCcccccc-cHHHHHhcCC----C-CCCHHH----HHHHHHHhCHHHHHHhCcccccchhcC-CCC
Confidence 567899999999999975 9999998752 1 223332 44455555543 345677763 356
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||+|+++|+|++||||||+||+.++..+.+.|+++.+ ++|+|++||+++ ..+.+|++++|++|++
T Consensus 471 ~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~-~~tvIiitHr~~--~~~~~D~ii~l~~G~i 547 (588)
T PRK13657 471 QLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMK-GRTTFIIAHRLS--TVRNADRILVFDNGRV 547 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEEecHH--HHHhCCEEEEEECCEE
Confidence 7999999999999999999999999999999999999999999998854 799999999985 3467999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
+..|+.++..
T Consensus 548 ~~~g~~~~l~ 557 (588)
T PRK13657 548 VESGSFDELV 557 (588)
T ss_pred EEeCCHHHHH
Confidence 9999987764
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=367.92 Aligned_cols=205 Identities=20% Similarity=0.367 Sum_probs=177.0
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-----hccccEEEEecCC---CCCCCC
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN-----QMTRNTGFVTQED---VLSPYL 136 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~-----~~~~~i~yv~Q~~---~l~~~l 136 (508)
.+++|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ..++.++|++|++ .+++.+
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 346 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH 346 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence 48999999999999999999999999999999999999999999999998642 2346799999986 488899
Q ss_pred CHHHHHHHHHHhcC-CCC--CCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 010509 137 TVTETMVFTALLQL-PNS--FTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLD 212 (508)
Q Consensus 137 Tv~E~l~~~~~l~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLD 212 (508)
|+.|++.+...... +.. ....+.+++++++++.+|+. +..++.++ .|||||||||+||++|+.+|++||||
T Consensus 347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrl~la~al~~~p~lllLD 421 (501)
T PRK11288 347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVILLD 421 (501)
T ss_pred CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccc-----cCCHHHHHHHHHHHHHccCCCEEEEc
Confidence 99999987532111 001 12233346788999999994 67777765 89999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 213 EPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 213 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
|||+|||+.++.++++.|++++++|.|||++|||++ .+.++||++++|++|++++.|+++++
T Consensus 422 EPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 422 EPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred CCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEECCEEEEEEccccC
Confidence 999999999999999999999888999999999986 57799999999999999999988753
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=318.83 Aligned_cols=171 Identities=27% Similarity=0.483 Sum_probs=154.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|+++++ +|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~-----------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 66 (182)
T cd03215 4 VLEVRGLSVKG-----------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTR 66 (182)
T ss_pred EEEEeccEEEe-----------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCc
Confidence 58889998752 7999999999999999999999999999999999999999999999998743
Q ss_pred -----hccccEEEEecCC---CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccC
Q 010509 118 -----QMTRNTGFVTQED---VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVS 189 (508)
Q Consensus 118 -----~~~~~i~yv~Q~~---~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 189 (508)
..++.++|++|++ .+++.+|++||+.+... ||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------LS 106 (182)
T cd03215 67 RSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------------LS 106 (182)
T ss_pred cCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------cC
Confidence 2356899999984 57888999999876420 89
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|+++ .+.+++|++++|++|++
T Consensus 107 ~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 107 GGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999999999877899999999986 57789999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=370.95 Aligned_cols=217 Identities=29% Similarity=0.469 Sum_probs=180.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++. +++++|+|+|+++++||.++|+||||||||||+++|+|+++|++|+|.+||+++..
T Consensus 316 ~i~~~~v~~~y~~-----------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~ 384 (544)
T TIGR01842 316 HLSVENVTIVPPG-----------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQ 384 (544)
T ss_pred eEEEEEEEEEcCC-----------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhh
Confidence 5999999999752 13578999999999999999999999999999999999999999999999998753
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHH-----HHHHHHHHcCCCcccccccCCCCCCcc
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIK-----CAEAVMTELGLSECKNSLIGGPLTRGV 188 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~L 188 (508)
..++.++||+|++.+++. |++||+.+.. ...++++..+ ..++.++.+ .+-.|+.+| +....|
T Consensus 385 ~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~-----~~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~-~~g~~L 455 (544)
T TIGR01842 385 WDRETFGKHIGYLPQDVELFPG-TVAENIARFG-----ENADPEKIIEAAKLAGVHELILRL--PDGYDTVIG-PGGATL 455 (544)
T ss_pred CCHHHHhhheEEecCCcccccc-cHHHHHhccC-----CCCCHHHHHHHHHHhChHHHHHhC--ccccccccC-CCcCCC
Confidence 467889999999999986 9999997532 1123332211 122333333 223456665 345789
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEE
Q 010509 189 SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLY 268 (508)
Q Consensus 189 SGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~ 268 (508)
|||||||++|||||+++|++++|||||||||+.++.++.+.|+++.++|+|+|+++|+++ ..+.+|++++|++|++++
T Consensus 456 SgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~ 533 (544)
T TIGR01842 456 SGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIAR 533 (544)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999999999767899999999986 346799999999999999
Q ss_pred EcChhhHH
Q 010509 269 SGEASGAM 276 (508)
Q Consensus 269 ~G~~~~~~ 276 (508)
.|+.++..
T Consensus 534 ~g~~~~l~ 541 (544)
T TIGR01842 534 FGERDEVL 541 (544)
T ss_pred eCCHHHHh
Confidence 99987764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=384.28 Aligned_cols=221 Identities=28% Similarity=0.458 Sum_probs=186.9
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|+.|+|+.+ .+.+||+|+|+.|++|+.+||+|||||||||++++|.+.+.|++|+|.++|.++.
T Consensus 349 g~ief~nV~FsYPsR----------pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~ 418 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSR----------PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIR 418 (1228)
T ss_pred cceEEEEEEecCCCC----------CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccch
Confidence 469999999998732 2568999999999999999999999999999999999999999999999999986
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH---HHHcCCCcccccccCCCCCCccC
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAV---MTELGLSECKNSLIGGPLTRGVS 189 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~---l~~lgL~~~~~~~vg~~~~~~LS 189 (508)
. ..|.+||.|.|+|.+|. .|++||+.|+. ++.++++..+..+.. --...|.+-.||.+|...+ +||
T Consensus 419 ~~~~~~lr~~iglV~QePvlF~-~tI~eNI~~G~-----~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~-qLS 491 (1228)
T KOG0055|consen 419 NLNLKWLRSQIGLVSQEPVLFA-TTIRENIRYGK-----PDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGV-QLS 491 (1228)
T ss_pred hcchHHHHhhcCeeeechhhhc-ccHHHHHhcCC-----CcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCC-CCC
Confidence 4 46789999999998886 59999999863 123343333222111 1113466778999996544 599
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
||||||++|||||+.+|+|||||||||+||+.+...+.+.|++.. +|+|.|+++|+++ .+.+ +|++++|++|+|++.
T Consensus 492 GGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLS-tIrn-aD~I~v~~~G~IvE~ 568 (1228)
T KOG0055|consen 492 GGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLS-TIRN-ADKIAVMEEGKIVEQ 568 (1228)
T ss_pred hHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh-hhhc-cCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999998875 5899999999997 4645 999999999999999
Q ss_pred cChhhHHH
Q 010509 270 GEASGAMN 277 (508)
Q Consensus 270 G~~~~~~~ 277 (508)
|+.+|++.
T Consensus 569 G~h~ELi~ 576 (1228)
T KOG0055|consen 569 GTHDELIA 576 (1228)
T ss_pred cCHHHHHh
Confidence 99998865
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-41 Score=322.27 Aligned_cols=198 Identities=21% Similarity=0.321 Sum_probs=165.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++.. .+.+++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 6 ~l~~~~l~~~~~~~-----------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~ 74 (207)
T cd03369 6 EIEVENLSVRYAPD-----------LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDIST 74 (207)
T ss_pred eEEEEEEEEEeCCC-----------CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHH
Confidence 58899999987510 2469999999999999999999999999999999999999999999999998742
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
..++.++|++|++.+++ .|++||+.+.. .... +.+.+.++ + ++ .++.||||||
T Consensus 75 ~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~----~~~~~~l~---~----~~-----~~~~LS~G~~ 131 (207)
T cd03369 75 IPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSD----EEIYGALR---V----SE-----GGLNLSQGQR 131 (207)
T ss_pred CCHHHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCH----HHHHHHhh---c----cC-----CCCcCCHHHH
Confidence 34668999999998887 59999996531 1122 12333333 2 22 3458999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. +|+|+|++||++.. +.. +|++++|++|+++..|++
T Consensus 132 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~-~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 132 QLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRT-IID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-Hhh-CCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999999999999999985 48999999999874 544 899999999999988763
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-42 Score=357.28 Aligned_cols=215 Identities=28% Similarity=0.495 Sum_probs=187.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++|++. ..++|+|+|+++++||.+||+|+||||||||++.|+|-.+|++|+|++||.++..
T Consensus 336 ~l~~~~vsF~y~~~-----------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~ 404 (573)
T COG4987 336 ALELRNVSFTYPGQ-----------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIAS 404 (573)
T ss_pred eeeeccceeecCCC-----------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhh
Confidence 69999999998732 3579999999999999999999999999999999999999999999999998753
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK-------NSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~ 186 (508)
..++.+++++|..++|.. |+++||..+. | +.+++ .+.++++++||++.. |+.+| +..+
T Consensus 405 l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~----~-~AsDE----el~~aL~qvgL~~l~~~~p~gl~t~lg-e~G~ 473 (573)
T COG4987 405 LDEQALRETISVLTQRVHLFSG-TLRDNLRLAN----P-DASDE----ELWAALQQVGLEKLLESAPDGLNTWLG-EGGR 473 (573)
T ss_pred CChhhHHHHHhhhccchHHHHH-HHHHHHhhcC----C-CCCHH----HHHHHHHHcCHHHHHHhChhhhhchhc-cCCC
Confidence 367889999999999986 9999998763 2 23443 356778888886543 55666 4567
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||+|++|.++++|||||.|||+.+..++++.|.+-++ |+|+|++||+... + +.||||++|++|++
T Consensus 474 ~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~-l-e~~drIivl~~Gki 550 (573)
T COG4987 474 RLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRG-L-ERMDRIIVLDNGKI 550 (573)
T ss_pred cCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEeccccc-H-hhcCEEEEEECCee
Confidence 8999999999999999999999999999999999999999999998765 8999999999874 4 56899999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
+.+|+..+...
T Consensus 551 ie~G~~~~Ll~ 561 (573)
T COG4987 551 IEEGTHAELLA 561 (573)
T ss_pred eecCCHHhhhc
Confidence 99999988764
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=319.59 Aligned_cols=175 Identities=33% Similarity=0.598 Sum_probs=153.2
Q ss_pred EEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--
Q 010509 40 KFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN-- 117 (508)
Q Consensus 40 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~-- 117 (508)
+++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 ~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~ 67 (180)
T cd03214 1 EVENLSVGYG-------------GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLS 67 (180)
T ss_pred CeeEEEEEEC-------------CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCC
Confidence 3678888764 3569999999999999999999999999999999999999999999999998742
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.++|++| +++.+|+.+..++.+ +.||||||||
T Consensus 68 ~~~~~~~i~~~~q-------------------------------------~l~~~gl~~~~~~~~-----~~LS~G~~qr 105 (180)
T cd03214 68 PKELARKIAYVPQ-------------------------------------ALELLGLAHLADRPF-----NELSGGERQR 105 (180)
T ss_pred HHHHHHHHhHHHH-------------------------------------HHHHcCCHhHhcCCc-----ccCCHHHHHH
Confidence 23446778877 566677776655544 4899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||+++ .+.+++|++++|++|++++.|
T Consensus 106 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 106 VLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999876 899999999986 566899999999999998654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=366.01 Aligned_cols=204 Identities=21% Similarity=0.283 Sum_probs=174.2
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-----hccccEEEEecCC---CCCCCCC
Q 010509 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN-----QMTRNTGFVTQED---VLSPYLT 137 (508)
Q Consensus 66 iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~-----~~~~~i~yv~Q~~---~l~~~lT 137 (508)
+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ..++.++|++|++ .+++.+|
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t 357 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP 357 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence 5899999999999999999999999999999999999999999999998743 1245799999984 4888899
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 010509 138 VTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTS 216 (508)
Q Consensus 138 v~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPts 216 (508)
+.|++........+......+.+++++++++.+||. +..++.++ +|||||||||+||++|+.+|++|||||||+
T Consensus 358 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrl~la~al~~~p~lLlLDEPt~ 432 (510)
T PRK15439 358 LAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAAR-----TLSGGNQQKVLIAKCLEASPQLLIVDEPTR 432 (510)
T ss_pred HHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccc-----cCCcHHHHHHHHHHHHhhCCCEEEECCCCc
Confidence 999986431111110111223345688999999997 67777765 899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 217 GLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 217 gLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
|||+.++..+.+.|++++++|.|||++|||+. .+.++||++++|++|+++..|+++++
T Consensus 433 gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 433 GVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred CcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEccccC
Confidence 99999999999999999888999999999986 57889999999999999999987654
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=378.22 Aligned_cols=216 Identities=25% Similarity=0.445 Sum_probs=182.7
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|++++|+. +++.+|+|+|+++++||.+||+|+||||||||+|+|+|+++|++|+|.+||+++.
T Consensus 454 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~ 522 (694)
T TIGR01846 454 GAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLA 522 (694)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehh
Confidence 36999999999852 1356999999999999999999999999999999999999999999999999985
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCC
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-------ECKNSLIGGPLT 185 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~ 185 (508)
+ .+|+.++||+|++.+++. |++||+.++. + ..+++ .+.++++..++. +-.||.+|+ ..
T Consensus 523 ~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~----~-~~~~~----~i~~a~~~~~l~~~i~~lp~gl~t~i~~-~g 591 (694)
T TIGR01846 523 IADPAWLRRQMGVVLQENVLFSR-SIRDNIALCN----P-GAPFE----HVIHAAKLAGAHDFISELPQGYNTEVGE-KG 591 (694)
T ss_pred hCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCC----C-CCCHH----HHHHHHHHcChHHHHHhCcCccCcEecC-CC
Confidence 4 567889999999999875 9999998642 1 22333 334445555543 335777764 35
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
.+||||||||++|||||+++|++|+||||||+||+.++.++.+.|+++. +++|+|++||+++. + ..||++++|++|+
T Consensus 592 ~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~-~-~~~d~ii~l~~G~ 668 (694)
T TIGR01846 592 ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLST-V-RACDRIIVLEKGQ 668 (694)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHH-H-HhCCEEEEEeCCE
Confidence 7899999999999999999999999999999999999999999999985 57999999999863 4 5699999999999
Q ss_pred EEEEcChhhHHH
Q 010509 266 PLYSGEASGAMN 277 (508)
Q Consensus 266 iv~~G~~~~~~~ 277 (508)
+++.|+.++..+
T Consensus 669 i~~~g~~~~l~~ 680 (694)
T TIGR01846 669 IAESGRHEELLA 680 (694)
T ss_pred EEEeCCHHHHHH
Confidence 999999887653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=371.81 Aligned_cols=215 Identities=23% Similarity=0.420 Sum_probs=184.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++.. ++.+|+|+|+++++||.++|+|+||||||||+++|+|+.+|.+|+|.+||+++++
T Consensus 330 ~i~~~~v~f~y~~~-----------~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~ 398 (571)
T TIGR02203 330 DVEFRNVTFRYPGR-----------DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLAD 398 (571)
T ss_pred eEEEEEEEEEcCCC-----------CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHh
Confidence 59999999997521 2569999999999999999999999999999999999999999999999998753
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-------CKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~ 186 (508)
..++.++||+|++.+++. |++||+.++. +++.++ ++++++++.+|+.+ -.||.+|+. .+
T Consensus 399 ~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~~~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~ 468 (571)
T TIGR02203 399 YTLASLRRQVALVSQDVVLFND-TIANNIAYGR----TEQADR----AEIERALAAAYAQDFVDKLPLGLDTPIGEN-GV 468 (571)
T ss_pred cCHHHHHhhceEEccCcccccc-cHHHHHhcCC----CCCCCH----HHHHHHHHHcChHHHHHhCcCcccceecCC-CC
Confidence 567889999999999875 9999998752 112233 34566677766643 356777743 56
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||+++.+|+|++||||||+||+.++..+++.|++++ +++|+|++||+++ ..+.||+|++|++|++
T Consensus 469 ~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~~g~i 545 (571)
T TIGR02203 469 LLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMDDGRI 545 (571)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEeCCEE
Confidence 899999999999999999999999999999999999999999999985 4699999999985 4578999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
+..|+.++..
T Consensus 546 ~~~g~~~~l~ 555 (571)
T TIGR02203 546 VERGTHNELL 555 (571)
T ss_pred EeeCCHHHHH
Confidence 9999988764
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=315.31 Aligned_cols=230 Identities=29% Similarity=0.385 Sum_probs=203.4
Q ss_pred eeEEEEeEEEEEeccccccCccccccc-ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC--CCcccEEEECCE
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEE-KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL--GRINGRITYNGK 113 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~-~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~--~~~~G~I~~~G~ 113 (508)
.+|+++||++++. + +.||++||++|++||+.+||||||||||||.++|+|.- .+++|+|.++|+
T Consensus 2 ~~L~I~dLhv~v~-------------~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~Ge 68 (251)
T COG0396 2 MMLEIKDLHVEVE-------------GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGE 68 (251)
T ss_pred ceeEEeeeEEEec-------------CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCc
Confidence 3699999999986 3 58999999999999999999999999999999999975 789999999999
Q ss_pred eCCh-----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCc
Q 010509 114 PFSN-----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTRG 187 (508)
Q Consensus 114 ~~~~-----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~ 187 (508)
++.. ..|+.+..-+|.|.=+|..|+.+.|..+...+........+..+.+++.++.+++.+ .+++.++ -+
T Consensus 69 dI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~G 144 (251)
T COG0396 69 DILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EG 144 (251)
T ss_pred ccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CC
Confidence 9853 456678999999999999999999998776543221113456678899999999987 6777776 48
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhc--cEEEEEeCCe
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMF--HKVLLLSEGY 265 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~--D~v~lL~~G~ 265 (508)
+|||||||..|+..++.+|++.+||||-||||..+-+.+-+.+++++++|.+++++||..+ +..+. |+|.+|.+|+
T Consensus 145 FSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~r--ll~~i~pD~vhvl~~Gr 222 (251)
T COG0396 145 FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQR--LLDYIKPDKVHVLYDGR 222 (251)
T ss_pred cCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHH--HHhhcCCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999999999999999964 55666 9999999999
Q ss_pred EEEEcChhhHHHHHHhcCCCC
Q 010509 266 PLYSGEASGAMNYFASIGYCP 286 (508)
Q Consensus 266 iv~~G~~~~~~~~f~~~g~~~ 286 (508)
|+..|.+ ++.++.++.||.|
T Consensus 223 Iv~sG~~-el~~~le~~gy~~ 242 (251)
T COG0396 223 IVKSGDP-ELAEELEEKGYDW 242 (251)
T ss_pred EEecCCH-HHHHHHHHhchHH
Confidence 9999999 8999999999965
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-41 Score=343.93 Aligned_cols=186 Identities=28% Similarity=0.439 Sum_probs=166.0
Q ss_pred EECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHH
Q 010509 82 MLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEK 159 (508)
Q Consensus 82 ilG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~ 159 (508)
|+||||||||||||+|+|+.+|++|+|.++|+++.. ..++.++|++|++.+++.+||+||+.|+...+ ..++++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~ 77 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRAEI 77 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHHHH
Confidence 689999999999999999999999999999998743 23567999999999999999999999876432 2344555
Q ss_pred HHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CC
Q 010509 160 IKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GR 238 (508)
Q Consensus 160 ~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~ 238 (508)
+++++++++.+||.+..++.+ ++|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+
T Consensus 78 ~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~ 152 (325)
T TIGR01187 78 KPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGI 152 (325)
T ss_pred HHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCC
Confidence 677899999999998887765 489999999999999999999999999999999999999999999999765 89
Q ss_pred EEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHH
Q 010509 239 TIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 239 tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~ 276 (508)
|+|++||++. ++..++||+++|++|+++..|+++++.
T Consensus 153 tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 153 TFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999986 577899999999999999999988774
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=335.42 Aligned_cols=234 Identities=27% Similarity=0.484 Sum_probs=204.5
Q ss_pred CceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEe
Q 010509 35 HPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP 114 (508)
Q Consensus 35 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~ 114 (508)
.++.++.+|+...++.+.+.+.. ......++++||+++++||-++|+|+||||||||=.+|.+++++. |+|.|+|++
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r--~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~ 349 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRR--TVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQD 349 (534)
T ss_pred CCceEEecceEEEEecCCccccc--cchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcc
Confidence 46789999999998876443221 223467999999999999999999999999999999999998765 999999999
Q ss_pred CCh-------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 010509 115 FSN-------QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT 185 (508)
Q Consensus 115 ~~~-------~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 185 (508)
+.. -.|+.+-.||||| .|.|.+||.|-+.-+....-| ..++.++.+++.++|+++||+... .+++|
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~----r~RYP 424 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPAT----RNRYP 424 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhH----hhcCC
Confidence 853 2467899999998 589999999999988766543 468899999999999999997532 13567
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
++.|||||||++|||||+.+|++++||||||.||-.-+.+++++|++|.++ |.+-++++||+. .+..+||+|+||++|
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~G 503 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRDG 503 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeCC
Confidence 899999999999999999999999999999999999999999999999764 999999999986 788999999999999
Q ss_pred eEEEEcChhhHHH
Q 010509 265 YPLYSGEASGAMN 277 (508)
Q Consensus 265 ~iv~~G~~~~~~~ 277 (508)
+||+.|+.+++++
T Consensus 504 kiVE~G~~~~if~ 516 (534)
T COG4172 504 KIVEQGPTEAVFA 516 (534)
T ss_pred EEeeeCCHHHHhc
Confidence 9999999987743
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=369.46 Aligned_cols=215 Identities=27% Similarity=0.465 Sum_probs=181.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++.. .++.+|+|+|++++|||.++|+||||||||||+|+|+|+++|.+|+|.+||.++++
T Consensus 337 ~i~~~~v~f~y~~~----------~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~ 406 (576)
T TIGR02204 337 EIEFEQVNFAYPAR----------PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQ 406 (576)
T ss_pred eEEEEEEEEECCCC----------CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHh
Confidence 59999999997521 12579999999999999999999999999999999999999999999999998753
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-------CKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~ 186 (508)
.+++.++|+||++.+++. |++||+.++. + ..++ ++++++++..|+.+ -.|+.+|+ ...
T Consensus 407 ~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~----~-~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~-~g~ 475 (576)
T TIGR02204 407 LDPAELRARMALVPQDPVLFAA-SVMENIRYGR----P-DATD----EEVEAAARAAHAHEFISALPEGYDTYLGE-RGV 475 (576)
T ss_pred cCHHHHHHhceEEccCCccccc-cHHHHHhcCC----C-CCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCC-CCC
Confidence 467789999999999875 9999998742 1 1222 34556666666543 34566653 356
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||+++.+|++++||||||+||+.++..+++.|+++. +++|+|++||+++ ....+|++++|++|++
T Consensus 476 ~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g~~ 552 (576)
T TIGR02204 476 TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQGRI 552 (576)
T ss_pred cCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEE
Confidence 799999999999999999999999999999999999999999999985 4799999999985 3467999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
+..|+.++..
T Consensus 553 ~~~g~~~~l~ 562 (576)
T TIGR02204 553 VAQGTHAELI 562 (576)
T ss_pred EeeecHHHHH
Confidence 9999988753
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=367.21 Aligned_cols=214 Identities=25% Similarity=0.420 Sum_probs=181.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++. +++.+|+|+|+++++||.++|+||||||||||+++|+|+++|++|+|.+||+++..
T Consensus 313 ~I~~~~v~~~y~~-----------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~ 381 (569)
T PRK10789 313 ELDVNIRQFTYPQ-----------TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTK 381 (569)
T ss_pred cEEEEEEEEECCC-----------CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhh
Confidence 5899999998752 13569999999999999999999999999999999999999999999999998753
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-------ECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~ 186 (508)
.+++.++|++|++.+++. |++||+.++. + ..+++ .++++++..++. +-.||.+|+ ...
T Consensus 382 ~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~-~~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~ 450 (569)
T PRK10789 382 LQLDSWRSRLAVVSQTPFLFSD-TVANNIALGR----P-DATQQ----EIEHVARLASVHDDILRLPQGYDTEVGE-RGV 450 (569)
T ss_pred CCHHHHHhheEEEccCCeeccc-cHHHHHhcCC----C-CCCHH----HHHHHHHHcCCHHHHHhCcCcccceecC-CCC
Confidence 467889999999999975 9999998742 1 12332 334455555543 345777764 456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||||+++|++++||||||+||+.++..+.+.|+++. +|+|+|++||+++. + +.+|++++|++|++
T Consensus 451 ~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~-~-~~~d~i~~l~~G~i 527 (569)
T PRK10789 451 MLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSA-L-TEASEILVMQHGHI 527 (569)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhH-H-HcCCEEEEEeCCEE
Confidence 899999999999999999999999999999999999999999999985 58999999999863 3 56999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
+..|+.++..
T Consensus 528 ~~~g~~~~l~ 537 (569)
T PRK10789 528 AQRGNHDQLA 537 (569)
T ss_pred EEecCHHHHH
Confidence 9999988764
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=329.14 Aligned_cols=194 Identities=28% Similarity=0.440 Sum_probs=174.9
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--------hccccEEEEecCCCCCCCCCHHH
Q 010509 69 GITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--------QMTRNTGFVTQEDVLSPYLTVTE 140 (508)
Q Consensus 69 ~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--------~~~~~i~yv~Q~~~l~~~lTv~E 140 (508)
++++..+.-.++||-|+||||||||+|+|+|+.+|++|.|.+||+-+.+ ..+|++||||||..|||++||+.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 6788887757999999999999999999999999999999999986532 23678999999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 010509 141 TMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDS 220 (508)
Q Consensus 141 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~ 220 (508)
||.|+.... .....+++.+.||++|..+++.. .|||||||||+|+|||++.|++|++|||.+.||-
T Consensus 96 NL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P~-----~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~ 161 (352)
T COG4148 96 NLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYPG-----TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161 (352)
T ss_pred chhhhhccc---------chHhHHHHHHHhCcHHHHhhCCC-----ccCcchhhHHHHHHHHhcCCCeeeecCchhhccc
Confidence 999986321 23456789999999999987764 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHHH
Q 010509 221 TIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMN 277 (508)
Q Consensus 221 ~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~ 277 (508)
.-+.+++-.|.+|+++ +..|+.+||.+. ++.+++|+|++|++|++..+|+.+++.+
T Consensus 162 ~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 162 PRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred chhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 9999999999999976 889999999986 5889999999999999999999998754
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=344.10 Aligned_cols=216 Identities=26% Similarity=0.365 Sum_probs=195.1
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++.+++++.++ ...+++|||++|++||+.||+|+||||||||+++|.|.+.|++|+|.++|+++.
T Consensus 3 ~~l~~~~itK~f~-------------~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~ 69 (501)
T COG3845 3 PALEMRGITKRFP-------------GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVR 69 (501)
T ss_pred ceEEEeccEEEcC-------------CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEec
Confidence 3588999999876 467999999999999999999999999999999999999999999999999874
Q ss_pred h-----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 117 N-----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 117 ~-----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
- ..+..||+|.|+..|+|++||.||+..+..-......+.++.+++++++.+..||.=..|.+++ .||-|
T Consensus 70 ~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~-----dLsVG 144 (501)
T COG3845 70 IKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-----DLSVG 144 (501)
T ss_pred cCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-----cCCcc
Confidence 1 3566899999999999999999999987643222234677788899999999999877888876 89999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
|||||.|-++|..+|++|+|||||+-|-|....++++.|++++++|+|||++||.+. ++.+.|||+.+|.+|+++-.-+
T Consensus 145 ~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 145 EQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred hhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeCCeEEeeec
Confidence 999999999999999999999999999999999999999999999999999999997 5889999999999999886555
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=364.60 Aligned_cols=214 Identities=25% Similarity=0.373 Sum_probs=178.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++. ++++|+|+|+++++||.++|+||||||||||+++|+|..+|++|+|.++|.++.+
T Consensus 334 ~i~~~~v~~~y~~------------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~ 401 (585)
T TIGR01192 334 AVEFRHITFEFAN------------SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINT 401 (585)
T ss_pred eEEEEEEEEECCC------------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhh
Confidence 5999999998751 2458999999999999999999999999999999999999999999999998753
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CcccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGL-------SECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~ 186 (508)
..++.++||+|++.+++ .|++||+.++. + ..++++.. +.++..++ .+..|+.+|. ...
T Consensus 402 ~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~----~-~~~~~~~~----~a~~~~~~~~~i~~l~~g~~t~~~~-~~~ 470 (585)
T TIGR01192 402 VTRESLRKSIATVFQDAGLFN-RSIRENIRLGR----E-GATDEEVY----EAAKAAAAHDFILKRSNGYDTLVGE-RGN 470 (585)
T ss_pred CCHHHHHhheEEEccCCccCc-ccHHHHHhcCC----C-CCCHHHHH----HHHHHhCcHHHHHhccccccchhcC-CCC
Confidence 46788999999999887 59999998752 1 22333322 23333333 2334566653 456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||+|+.+|++++||||||+||+.++..+.+.|+++. +++|+|++||+++. + ..+|++++|++|++
T Consensus 471 ~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~-~-~~~d~i~~l~~G~i 547 (585)
T TIGR01192 471 RLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLST-V-RNADLVLFLDQGRL 547 (585)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHH-H-HcCCEEEEEECCEE
Confidence 899999999999999999999999999999999999999999999885 48999999999863 4 56999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
+..|+.++..+
T Consensus 548 ~~~g~~~~l~~ 558 (585)
T TIGR01192 548 IEKGSFQELIQ 558 (585)
T ss_pred EEECCHHHHHH
Confidence 99999887653
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=314.86 Aligned_cols=191 Identities=20% Similarity=0.326 Sum_probs=162.7
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChh
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ 118 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~ 118 (508)
++++|++++++ ++.+++ +|+++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++...
T Consensus 2 l~~~~l~~~~~-------------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~ 67 (195)
T PRK13541 2 LSLHQLQFNIE-------------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNI 67 (195)
T ss_pred eEEEEeeEEEC-------------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChh
Confidence 78899999874 234555 9999999999999999999999999999999999999999999987543
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHH
Q 010509 119 MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSI 198 (508)
Q Consensus 119 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 198 (508)
.++.++|++|++.+++.+||.||+.+..... . ..++++++++.+++.+..++.+ +.||||||||++|
T Consensus 68 ~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rl~l 134 (195)
T PRK13541 68 AKPYCTYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEKC-----YSLSSGMQKIVAI 134 (195)
T ss_pred hhhhEEeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccCh-----hhCCHHHHHHHHH
Confidence 3456999999988888899999998754321 1 1345678899999987777665 4899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEE
Q 010509 199 GQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKV 258 (508)
Q Consensus 199 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v 258 (508)
|++|+.+|++++|||||+|||+.++..+.+.|++..++|+|+|++||+++. + ..+|-+
T Consensus 135 a~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-i-~~~~~~ 192 (195)
T PRK13541 135 ARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS-I-KSAQIL 192 (195)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccc-c-chhhee
Confidence 999999999999999999999999999999998877779999999999863 3 336654
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=318.27 Aligned_cols=196 Identities=28% Similarity=0.485 Sum_probs=155.5
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChh
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ 118 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~ 118 (508)
++++||+++++... ...+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~--------~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g------ 66 (204)
T cd03250 1 ISVEDASFTWDSGE--------QETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------ 66 (204)
T ss_pred CEEeEEEEecCCCC--------ccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC------
Confidence 46899998875110 0013699999999999999999999999999999999999999999999998
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCCCCCccCHH
Q 010509 119 MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK-------NSLIGGPLTRGVSGG 191 (508)
Q Consensus 119 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~~LSGG 191 (508)
.++|++|++.+++ .|++||+.+... ...+ ...+.++.+++.+.. ++... ..+++||||
T Consensus 67 ---~i~~~~q~~~l~~-~t~~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~lS~G 131 (204)
T cd03250 67 ---SIAYVSQEPWIQN-GTIRENILFGKP------FDEE----RYEKVIKACALEPDLEILPDGDLTEIG-EKGINLSGG 131 (204)
T ss_pred ---EEEEEecCchhcc-CcHHHHhccCCC------cCHH----HHHHHHHHcCcHHHHHhccCcccceec-CCCCcCCHH
Confidence 5999999998885 699999987421 1111 122333343432221 11222 235689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILS-ILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
||||++|||+|+.+|++++|||||+|||+.++..+.+ ++++++++|+|||++||+++ .+.. +|++++|++|+
T Consensus 132 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 132 QKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEEeCCC
Confidence 9999999999999999999999999999999999998 56777666899999999986 4555 99999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=309.93 Aligned_cols=167 Identities=33% Similarity=0.602 Sum_probs=148.6
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|+++.++.. +..+++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~-----------~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~ 69 (171)
T cd03228 1 IEFKNVSFSYPGR-----------PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDL 69 (171)
T ss_pred CEEEEEEEEcCCC-----------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhc
Confidence 4678998886410 1369999999999999999999999999999999999999999999999998742
Q ss_pred ---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHH
Q 010509 118 ---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 118 ---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 194 (508)
..++.++|++|++.+++ .|+.||+ |||||||
T Consensus 70 ~~~~~~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~~~ 103 (171)
T cd03228 70 DLESLRKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQRQ 103 (171)
T ss_pred CHHHHHhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHHHH
Confidence 34567999999988776 5888876 8999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
|++||++|+.+|++++|||||+|||+.++.++.+.|+++.+ ++|||++||++. .+.. ||++++|++|+
T Consensus 104 rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 104 RIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 99999999999999999999999999999999999999964 799999999987 4556 99999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=304.96 Aligned_cols=157 Identities=29% Similarity=0.460 Sum_probs=143.7
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ ++++++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~ 67 (163)
T cd03216 1 LELRGITKRFG-------------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFA 67 (163)
T ss_pred CEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcC
Confidence 46889998875 3569999999999999999999999999999999999999999999999998743
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
..++.++|++| ||||||
T Consensus 68 ~~~~~~~~~i~~~~q-----------------------------------------------------------LS~G~~ 88 (163)
T cd03216 68 SPRDARRAGIAMVYQ-----------------------------------------------------------LSVGER 88 (163)
T ss_pred CHHHHHhcCeEEEEe-----------------------------------------------------------cCHHHH
Confidence 23557889888 899999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEE
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLY 268 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~ 268 (508)
||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||++. .+.+.+|++++|++|++++
T Consensus 89 qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 89 QMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999999877999999999986 4778899999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=318.02 Aligned_cols=200 Identities=25% Similarity=0.434 Sum_probs=160.4
Q ss_pred EEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--
Q 010509 40 KFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN-- 117 (508)
Q Consensus 40 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~-- 117 (508)
.+.|+.+.++ +.+.+++|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++..
T Consensus 2 ~~~~~~~~~~------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~ 69 (218)
T cd03290 2 QVTNGYFSWG------------SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPS 69 (218)
T ss_pred eeeeeEEecC------------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCccccccc
Confidence 3567777654 13569999999999999999999999999999999999999999999999987632
Q ss_pred ------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------cccCCCC
Q 010509 118 ------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKN-------SLIGGPL 184 (508)
Q Consensus 118 ------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~ 184 (508)
..++.++|++|++.++ ..|++||+.+... ... +..+++++.+++.+..+ +..+ ..
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~ 137 (218)
T cd03290 70 FEATRSRNRYSVAYAAQKPWLL-NATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEIG-ER 137 (218)
T ss_pred ccccchhhcceEEEEcCCCccc-cccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCcc-cC
Confidence 1345799999999887 5799999976421 111 12334556666644322 1111 23
Q ss_pred CCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILS--ILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~--~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
+..||||||||++||++|+.+|+++||||||+|||+.++..+++ +++.+.+.|.|+|++||+++. + ..+|++++|+
T Consensus 138 ~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~ 215 (218)
T cd03290 138 GINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY-L-PHADWIIAMK 215 (218)
T ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH-H-hhCCEEEEec
Confidence 56899999999999999999999999999999999999999998 677776678999999999874 5 4699999999
Q ss_pred CCe
Q 010509 263 EGY 265 (508)
Q Consensus 263 ~G~ 265 (508)
+|+
T Consensus 216 ~G~ 218 (218)
T cd03290 216 DGS 218 (218)
T ss_pred CCC
Confidence 884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=361.60 Aligned_cols=220 Identities=27% Similarity=0.435 Sum_probs=192.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|++++++.. .+.+.+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++..
T Consensus 4 ~l~~~nl~~~y~~~---------~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~ 74 (648)
T PRK10535 4 LLELKDIRRSYPSG---------EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVAT 74 (648)
T ss_pred EEEEeeEEEEeCCC---------CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCc
Confidence 69999999987521 013569999999999999999999999999999999999999999999999998753
Q ss_pred ----h----ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccC
Q 010509 118 ----Q----MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVS 189 (508)
Q Consensus 118 ----~----~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 189 (508)
+ .++.++|++|++.+++.+|+.||+.+..... ..+.++.++++.++++.+||.+..|+.++ .||
T Consensus 75 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~-----~LS 146 (648)
T PRK10535 75 LDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQPS-----QLS 146 (648)
T ss_pred CCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCcc-----cCC
Confidence 1 1467999999999999999999998765322 22345566788999999999988777664 899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ .+ +.|||+++|++|++++.
T Consensus 147 ~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~-~~-~~~d~i~~l~~G~i~~~ 224 (648)
T PRK10535 147 GGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ-VA-AQAERVIEIRDGEIVRN 224 (648)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HH-HhCCEEEEEECCEEEee
Confidence 99999999999999999999999999999999999999999999877999999999986 34 56999999999999999
Q ss_pred cChhhHH
Q 010509 270 GEASGAM 276 (508)
Q Consensus 270 G~~~~~~ 276 (508)
|++++..
T Consensus 225 g~~~~~~ 231 (648)
T PRK10535 225 PPAQEKV 231 (648)
T ss_pred cCccccc
Confidence 9998775
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=355.55 Aligned_cols=216 Identities=22% Similarity=0.377 Sum_probs=178.9
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|+++.. +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 249 ~~i~~~~l~~~~---------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 313 (491)
T PRK10982 249 VILEVRNLTSLR---------------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKIN 313 (491)
T ss_pred cEEEEeCccccc---------------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECC
Confidence 368999988751 34899999999999999999999999999999999999999999999999874
Q ss_pred h-----hccccEEEEecCC---CCCCCCCHHHHHHHHHH--h-cCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCC
Q 010509 117 N-----QMTRNTGFVTQED---VLSPYLTVTETMVFTAL--L-QLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPL 184 (508)
Q Consensus 117 ~-----~~~~~i~yv~Q~~---~l~~~lTv~E~l~~~~~--l-~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~ 184 (508)
. ..++.++|++|++ .+++.+|+.+|..+... . ......+....+++++++++.+++. +..++.++
T Consensus 314 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 390 (491)
T PRK10982 314 NHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIG--- 390 (491)
T ss_pred CCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccc---
Confidence 3 2345699999985 47888998877432210 0 0000012233456788899999995 45566654
Q ss_pred CCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
+|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|.|||++|||++ .+..+|||+++|++|
T Consensus 391 --~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~g 467 (491)
T PRK10982 391 --SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSNG 467 (491)
T ss_pred --cCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEECC
Confidence 89999999999999999999999999999999999999999999999888999999999986 577899999999999
Q ss_pred eEEEEcChh
Q 010509 265 YPLYSGEAS 273 (508)
Q Consensus 265 ~iv~~G~~~ 273 (508)
+++..++.+
T Consensus 468 ~i~~~~~~~ 476 (491)
T PRK10982 468 LVAGIVDTK 476 (491)
T ss_pred EEEEEEccc
Confidence 999777653
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-40 Score=356.54 Aligned_cols=210 Identities=25% Similarity=0.414 Sum_probs=176.1
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++|++++++ ++++|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|.
T Consensus 1 ml~i~~ls~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---- 63 (530)
T PRK15064 1 MLSTANITMQFG-------------AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN---- 63 (530)
T ss_pred CEEEEEEEEEeC-------------CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----
Confidence 378999999875 357999999999999999999999999999999999999999999999873
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHH-h-----------cCCCC-----------------CCHHHHHHHHHHHHH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTAL-L-----------QLPNS-----------------FTEKEKIKCAEAVMT 168 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~-l-----------~~~~~-----------------~~~~~~~~~v~~~l~ 168 (508)
+.++|++|++.+++.+||+|++.++.. . ..+.. ....+.+++++++++
T Consensus 64 ---~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 140 (530)
T PRK15064 64 ---ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLL 140 (530)
T ss_pred ---CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 359999999999999999999986421 0 00000 000123457889999
Q ss_pred HcCCCccc-ccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCc
Q 010509 169 ELGLSECK-NSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQP 247 (508)
Q Consensus 169 ~lgL~~~~-~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~ 247 (508)
.+||.+.. ++.+ .+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||++|||+
T Consensus 141 ~~gl~~~~~~~~~-----~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~ 212 (530)
T PRK15064 141 GVGIPEEQHYGLM-----SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDR 212 (530)
T ss_pred hCCCChhHhcCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCH
Confidence 99997643 3344 48999999999999999999999999999999999999999999864 589999999998
Q ss_pred chHHHhhccEEEEEeCCeE-EEEcChhhHH
Q 010509 248 SNMLYYMFHKVLLLSEGYP-LYSGEASGAM 276 (508)
Q Consensus 248 ~~~~~~~~D~v~lL~~G~i-v~~G~~~~~~ 276 (508)
+ .+.++||++++|++|++ ++.|++++..
T Consensus 213 ~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 213 H-FLNSVCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred H-HHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence 6 57789999999999999 4889887654
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=359.93 Aligned_cols=187 Identities=32% Similarity=0.543 Sum_probs=160.4
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|++|+|+. ++++|+|+|+++++||.+||+||||||||||+|+|+|+++|++|+|.+||+++.
T Consensus 333 ~~I~~~~vsf~Y~~------------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~ 400 (529)
T TIGR02868 333 PTLELRDLSFGYPG------------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVS 400 (529)
T ss_pred ceEEEEEEEEecCC------------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhh
Confidence 36999999999851 245999999999999999999999999999999999999999999999999876
Q ss_pred h---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCC
Q 010509 117 N---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-------ECKNSLIGGPLTR 186 (508)
Q Consensus 117 ~---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~ 186 (508)
+ .+|+.++||+|++.+|+. |++||+.++. + ..++ ++++++++..++. +-.||.+|+ ...
T Consensus 401 ~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~----~-~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~ 469 (529)
T TIGR02868 401 SLQDELRRRISVFAQDAHLFDT-TVRDNLRLGR----P-DATD----EELWAALERVGLADWLRSLPDGLDTVLGE-GGA 469 (529)
T ss_pred hHHHHHHhheEEEccCcccccc-cHHHHHhccC----C-CCCH----HHHHHHHHHcCCHHHHHhCcccccchhcc-ccC
Confidence 3 567799999999999986 9999998852 1 2233 3355666666654 345888874 456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCc
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQP 247 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~ 247 (508)
.||||||||++|||||+.+|+|++||||||+||+.+...+.+.|+++. +++|+|+++|++
T Consensus 470 ~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 470 RLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 799999999999999999999999999999999999999999999864 479999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=316.69 Aligned_cols=218 Identities=28% Similarity=0.465 Sum_probs=189.1
Q ss_pred CceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEe
Q 010509 35 HPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP 114 (508)
Q Consensus 35 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~ 114 (508)
....|+++|++.+++ +|+||+|+|++|+|||-.+|+|||||||||||++++|..+|.+|.+.+.|++
T Consensus 28 ~~~li~l~~v~v~r~-------------gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~ 94 (257)
T COG1119 28 NEPLIELKNVSVRRN-------------GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRR 94 (257)
T ss_pred CcceEEecceEEEEC-------------CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeee
Confidence 345699999999875 6899999999999999999999999999999999999999999999999998
Q ss_pred CCh-----hccccEEEEecC--CCCCCCCCHHHHHHHHH--HhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 010509 115 FSN-----QMTRNTGFVTQE--DVLSPYLTVTETMVFTA--LLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT 185 (508)
Q Consensus 115 ~~~-----~~~~~i~yv~Q~--~~l~~~lTv~E~l~~~~--~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 185 (508)
..+ +.|++||+|.-+ ..+.+..+|+|-+.-+. ..........++..+++..+++.+|+.+.+|+..+
T Consensus 95 ~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~---- 170 (257)
T COG1119 95 FGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG---- 170 (257)
T ss_pred ccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh----
Confidence 743 578999999753 44566778888775332 22222212345667889999999999999999887
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC--CCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG--GRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~--g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
.||-||||||-|||||+.+|.+||||||++|||...+..+++.|.+++.. +.++|++||+++ ++-..|++++++++
T Consensus 171 -~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~~ 248 (257)
T COG1119 171 -SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKE 248 (257)
T ss_pred -hcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEeeC
Confidence 89999999999999999999999999999999999999999999999865 899999999986 68899999999999
Q ss_pred CeEEEEcC
Q 010509 264 GYPLYSGE 271 (508)
Q Consensus 264 G~iv~~G~ 271 (508)
|+++++|.
T Consensus 249 g~v~~~g~ 256 (257)
T COG1119 249 GEVVAQGK 256 (257)
T ss_pred Cceeeccc
Confidence 99999874
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=313.82 Aligned_cols=195 Identities=18% Similarity=0.210 Sum_probs=164.0
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEE-ECCEeCChhccccEEEEecCCCCCCCCCHHHHHH
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRIT-YNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~-~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
++|+|||+++++||+++|+||||||||||+|+|+|+.+|++|+|. ++|.... +.+++.+++.+|++||+.
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~---------~~~~~~l~~~ltv~enl~ 71 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP---------LGANSFILPGLTGEENAR 71 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec---------cccccccCCcCcHHHHHH
Confidence 379999999999999999999999999999999999999999997 7775431 234567889999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 010509 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIA 223 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~ 223 (508)
+..... ..+.++. .+.+.+.++|.+..++.++ .||||||||++||++|+.+|++++|||||+++|+.++
T Consensus 72 ~~~~~~---~~~~~~~---~~~~~~~~~l~~~~~~~~~-----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~ 140 (213)
T PRK15177 72 MMASLY---GLDGDEF---SHFCYQLTQLEQCYTDRVS-----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQ 140 (213)
T ss_pred HHHHHc---CCCHHHH---HHHHHHHhChhHHhhchHh-----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHH
Confidence 876543 1222222 2344566788877777665 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHHHHHHh
Q 010509 224 QQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNYFAS 281 (508)
Q Consensus 224 ~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~ 281 (508)
..+.+.|.+..+ ++|+|++||+++ .+..++|++++|++|++++.|+.+++.++++.
T Consensus 141 ~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 141 LRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 999998865443 468999999987 57788999999999999999999999888764
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=354.88 Aligned_cols=210 Identities=26% Similarity=0.354 Sum_probs=176.4
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
+++|+++||+++++. ++.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.+++.
T Consensus 4 ~~~l~i~~l~~~y~~------------~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-- 69 (556)
T PRK11819 4 QYIYTMNRVSKVVPP------------KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-- 69 (556)
T ss_pred cEEEEEeeEEEEeCC------------CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--
Confidence 347999999998741 357999999999999999999999999999999999999999999999752
Q ss_pred ChhccccEEEEecCCCCCCCCCHHHHHHHHHH-hc------------CCCCCCH--------------------HHHHHH
Q 010509 116 SNQMTRNTGFVTQEDVLSPYLTVTETMVFTAL-LQ------------LPNSFTE--------------------KEKIKC 162 (508)
Q Consensus 116 ~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~-l~------------~~~~~~~--------------------~~~~~~ 162 (508)
..+|||+|++.+++.+||.||+.++.. .+ ....... .+..++
T Consensus 70 -----~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (556)
T PRK11819 70 -----IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQ 144 (556)
T ss_pred -----CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHH
Confidence 459999999999999999999987531 00 0000000 012456
Q ss_pred HHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEE
Q 010509 163 AEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVM 242 (508)
Q Consensus 163 v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~ 242 (508)
++++++.+||.. .++.++ +|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .|||+
T Consensus 145 ~~~~l~~~gl~~-~~~~~~-----~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tvii 215 (556)
T PRK11819 145 LEIAMDALRCPP-WDAKVT-----KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVA 215 (556)
T ss_pred HHHHHHhCCCCc-ccCchh-----hcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEE
Confidence 788999999964 566654 899999999999999999999999999999999999999999999873 59999
Q ss_pred EecCcchHHHhhccEEEEEeCCeEE-EEcChhh
Q 010509 243 TIHQPSNMLYYMFHKVLLLSEGYPL-YSGEASG 274 (508)
Q Consensus 243 s~H~~~~~~~~~~D~v~lL~~G~iv-~~G~~~~ 274 (508)
+||+++ .+...+|++++|++|+++ +.|+.++
T Consensus 216 isHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~ 247 (556)
T PRK11819 216 VTHDRY-FLDNVAGWILELDRGRGIPWEGNYSS 247 (556)
T ss_pred EeCCHH-HHHhhcCeEEEEeCCEEEEecCCHHH
Confidence 999986 577899999999999986 8888765
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=392.52 Aligned_cols=216 Identities=22% Similarity=0.391 Sum_probs=184.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC--------------
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-------------- 103 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-------------- 103 (508)
.++++||+|+|+.+ .++++|+|+||+++||+.+||+||||||||||+++|.|++.|
T Consensus 1165 ~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~ 1234 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTN 1234 (1466)
T ss_pred eEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccc
Confidence 59999999998621 135799999999999999999999999999999999999987
Q ss_pred ----------------------------------------cccEEEECCEeCCh----hccccEEEEecCCCCCCCCCHH
Q 010509 104 ----------------------------------------INGRITYNGKPFSN----QMTRNTGFVTQEDVLSPYLTVT 139 (508)
Q Consensus 104 ----------------------------------------~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lTv~ 139 (508)
++|+|++||+++.+ .+|+.+|||+|++.+|+ .|++
T Consensus 1235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIr 1313 (1466)
T PTZ00265 1235 DMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIY 1313 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHH
Confidence 69999999999853 57889999999999996 5999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 010509 140 ETMVFTALLQLPNSFTEKEKIKCAEAVMTELG-------LSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLD 212 (508)
Q Consensus 140 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLD 212 (508)
|||.++. + ..++++ ++++++..+ |.+-.||.+| +....||||||||++|||||+++|+||+||
T Consensus 1314 eNI~~g~----~-~at~ee----I~~A~k~A~l~~fI~~LP~GydT~VG-e~G~~LSGGQkQRIaIARALlr~p~ILLLD 1383 (1466)
T PTZ00265 1314 ENIKFGK----E-DATRED----VKRACKFAAIDEFIESLPNKYDTNVG-PYGKSLSGGQKQRIAIARALLREPKILLLD 1383 (1466)
T ss_pred HHHhcCC----C-CCCHHH----HHHHHHHcCCHHHHHhCccccCCccC-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999863 1 234433 444444444 4556789998 456789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEecCcchHHHhhccEEEEEeC----CeEE-EEcChhhHH
Q 010509 213 EPTSGLDSTIAQQILSILLKLA-NGGRTIVMTIHQPSNMLYYMFHKVLLLSE----GYPL-YSGEASGAM 276 (508)
Q Consensus 213 EPtsgLD~~~~~~i~~~L~~l~-~~g~tii~s~H~~~~~~~~~~D~v~lL~~----G~iv-~~G~~~~~~ 276 (508)
||||+||+.+...|.+.|+++. .+++|+|+++|+++. + +.||+|++|++ |+++ ..|+.+++.
T Consensus 1384 EaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlst-i-~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1384 EATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIAS-I-KRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred CcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHH-H-HhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 9999999999999999999986 368999999999863 4 66999999999 9955 899988875
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=353.10 Aligned_cols=215 Identities=21% Similarity=0.354 Sum_probs=175.3
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-cccEEEECCEeC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-INGRITYNGKPF 115 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-~~G~I~~~G~~~ 115 (508)
..++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+|+|+|+.++ ++|+|.++|+++
T Consensus 259 ~~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~ 325 (490)
T PRK10938 259 PRIVLNNGVVSYN-------------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRR 325 (490)
T ss_pred ceEEEeceEEEEC-------------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccC
Confidence 4699999999875 35699999999999999999999999999999999998765 699999999875
Q ss_pred Ch-----hccccEEEEecCCCCCCC--CCHHHHHHHHHHh--cCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCC
Q 010509 116 SN-----QMTRNTGFVTQEDVLSPY--LTVTETMVFTALL--QLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLT 185 (508)
Q Consensus 116 ~~-----~~~~~i~yv~Q~~~l~~~--lTv~E~l~~~~~l--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~ 185 (508)
.. ..++.++|++|++.+++. .|+++++.+.... ....... .+.+++++++++.+||.+ ..++.++
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~---- 400 (490)
T PRK10938 326 GSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPFH---- 400 (490)
T ss_pred CCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCchh----
Confidence 32 235679999998765433 4677766543211 1111112 233457889999999987 7777664
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCC-CEEEEEecCcchHHHh-hccEEEEEeC
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGG-RTIVMTIHQPSNMLYY-MFHKVLLLSE 263 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tii~s~H~~~~~~~~-~~D~v~lL~~ 263 (508)
+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++| .|||++|||++. +.+ ++|++++|++
T Consensus 401 -~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~-~~~~~~d~v~~l~~ 478 (490)
T PRK10938 401 -SLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAED-APACITHRLEFVPD 478 (490)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhh-hhhhhheeEEEecC
Confidence 899999999999999999999999999999999999999999999998765 579999999864 555 6899999999
Q ss_pred CeEEEEcC
Q 010509 264 GYPLYSGE 271 (508)
Q Consensus 264 G~iv~~G~ 271 (508)
|+++..-.
T Consensus 479 G~i~~~~~ 486 (490)
T PRK10938 479 GDIYRYVQ 486 (490)
T ss_pred CceEEeec
Confidence 99887643
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=323.98 Aligned_cols=204 Identities=28% Similarity=0.426 Sum_probs=165.7
Q ss_pred CceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEe
Q 010509 35 HPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP 114 (508)
Q Consensus 35 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~ 114 (508)
....|+++|+++. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 36 ~~~~l~i~nls~~---------------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-- 98 (282)
T cd03291 36 DDNNLFFSNLCLV---------------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-- 98 (282)
T ss_pred CCCeEEEEEEEEe---------------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--
Confidence 3456999999884 14599999999999999999999999999999999999999999999988
Q ss_pred CChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCCCCCc
Q 010509 115 FSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK-------NSLIGGPLTRG 187 (508)
Q Consensus 115 ~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~~ 187 (508)
.++|++|++.+++. ||+||+.+.... .. .++.+.++.+++.+.. ++.++ ..++.
T Consensus 99 -------~i~yv~q~~~l~~~-tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~-~~~~~ 159 (282)
T cd03291 99 -------RISFSSQFSWIMPG-TIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLG-EGGIT 159 (282)
T ss_pred -------EEEEEeCccccccc-CHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceec-CCCCc
Confidence 38999999988875 999999864211 11 1122334444443322 22222 23468
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSIL-LKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L-~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.+ ++++ ++.|||++||++.. + ..+|++++|++|++
T Consensus 160 LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~i~~l~~G~i 236 (282)
T cd03291 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHEGSS 236 (282)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999865 5554 47999999999874 4 57999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
++.|+++++..
T Consensus 237 ~~~g~~~~~~~ 247 (282)
T cd03291 237 YFYGTFSELQS 247 (282)
T ss_pred EEECCHHHHHh
Confidence 99999887643
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=300.90 Aligned_cols=163 Identities=31% Similarity=0.526 Sum_probs=144.4
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChh
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ 118 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~ 118 (508)
++++|+++.++. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 i~~~~~~~~~~~------------~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~----- 63 (166)
T cd03223 1 IELENLSLATPD------------GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG----- 63 (166)
T ss_pred CEEEEEEEEcCC------------CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----
Confidence 467899887641 246999999999999999999999999999999999999999999999874
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHH
Q 010509 119 MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSI 198 (508)
Q Consensus 119 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 198 (508)
+.++|++|++.++ ..|++||+.+. .+++||||||||++|
T Consensus 64 --~~i~~~~q~~~~~-~~tv~~nl~~~--------------------------------------~~~~LS~G~~~rv~l 102 (166)
T cd03223 64 --EDLLFLPQRPYLP-LGTLREQLIYP--------------------------------------WDDVLSGGEQQRLAF 102 (166)
T ss_pred --ceEEEECCCCccc-cccHHHHhhcc--------------------------------------CCCCCCHHHHHHHHH
Confidence 5699999998765 57999998642 124899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 199 GQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 199 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
||+|+.+|++++|||||+|||+.++..+.+.|+++ ++|+|++||+++ . ...+|++++|++|
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~-~-~~~~d~i~~l~~~ 163 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS-L-WKFHDRVLDLDGE 163 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh-H-HhhCCEEEEEcCC
Confidence 99999999999999999999999999999999987 589999999985 3 4689999999865
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=353.13 Aligned_cols=203 Identities=23% Similarity=0.387 Sum_probs=174.8
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|++++++ ++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+
T Consensus 318 ~~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--- 381 (530)
T PRK15064 318 NALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN--- 381 (530)
T ss_pred ceEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc---
Confidence 3699999999875 356999999999999999999999999999999999999999999999873
Q ss_pred hhccccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCccCHHHH
Q 010509 117 NQMTRNTGFVTQEDV--LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 117 ~~~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGer 193 (508)
+.+||++|++. +++.+|+.|++.+.. .. . ..+++++++++.+|+. +..++.++ +||||||
T Consensus 382 ----~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-~----~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~ 444 (530)
T PRK15064 382 ----ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-G----DDEQAVRGTLGRLLFSQDDIKKSVK-----VLSGGEK 444 (530)
T ss_pred ----eEEEEEcccccccCCCCCcHHHHHHHhc---cC-C----ccHHHHHHHHHHcCCChhHhcCccc-----ccCHHHH
Confidence 46999999864 566799999986421 11 1 1235678899999994 56676664 9999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE-EEcCh
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL-YSGEA 272 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv-~~G~~ 272 (508)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++ +.|||++|||+. .+..+||++++|++|+++ +.|++
T Consensus 445 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~ 520 (530)
T PRK15064 445 GRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITPDGVVDFSGTY 520 (530)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEcCCCH
Confidence 9999999999999999999999999999999999999987 359999999986 577889999999999998 88887
Q ss_pred hhHH
Q 010509 273 SGAM 276 (508)
Q Consensus 273 ~~~~ 276 (508)
++..
T Consensus 521 ~~~~ 524 (530)
T PRK15064 521 EEYL 524 (530)
T ss_pred HHHH
Confidence 7553
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=302.51 Aligned_cols=192 Identities=25% Similarity=0.444 Sum_probs=171.0
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh----hccccEEEEecCCCCCCCCCH
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----QMTRNTGFVTQEDVLSPYLTV 138 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lTv 138 (508)
+.++|+++||.+++||..+|.||||||||||+|+++.+..|++|++++.|++++. .+|++++|+.|.+.||+. ||
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~-tV 93 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-TV 93 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccccc-ch
Confidence 5789999999999999999999999999999999999999999999999999863 678899999999999997 99
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 010509 139 TETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC-KNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSG 217 (508)
Q Consensus 139 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsg 217 (508)
++|+.|..++|..+. ..++..+.++.+++.+. .++.+ ..||||||||++|+|.|..-|+||+||||||.
T Consensus 94 eDNlifP~~~r~rr~-----dr~aa~~llar~~l~~~~L~k~i-----t~lSGGE~QriAliR~Lq~~P~ILLLDE~TsA 163 (223)
T COG4619 94 EDNLIFPWQIRNRRP-----DRAAALDLLARFALPDSILTKNI-----TELSGGEKQRIALIRNLQFMPKILLLDEITSA 163 (223)
T ss_pred hhccccchHHhccCC-----ChHHHHHHHHHcCCchhhhcchh-----hhccchHHHHHHHHHHhhcCCceEEecCchhh
Confidence 999999887764221 23456788999999764 34444 48999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHH-cCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 218 LDSTIAQQILSILLKLA-NGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 218 LD~~~~~~i~~~L~~l~-~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
||+.++..|-+++.++. ++++.++-+|||+.. ..+.||+++-+..|++
T Consensus 164 LD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dq-a~rha~k~itl~~G~~ 212 (223)
T COG4619 164 LDESNKRNIEEMIHRYVREQNVAVLWITHDKDQ-AIRHADKVITLQPGHA 212 (223)
T ss_pred cChhhHHHHHHHHHHHhhhhceEEEEEecChHH-HhhhhheEEEeccCcc
Confidence 99999999999999986 578999999999874 4588999999999864
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=367.37 Aligned_cols=220 Identities=25% Similarity=0.445 Sum_probs=191.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++|.|+.+ .+.+||+|+|+++++|+-+||+|||||||||.+.+|-..+.|++|.|.+||+++.+
T Consensus 987 ~I~~~~V~F~YPsR----------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~ 1056 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTR----------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKD 1056 (1228)
T ss_pred EEEEeeeEeeCCCC----------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCccccc
Confidence 69999999998743 36789999999999999999999999999999999999999999999999999865
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH-HH--HcCCCcccccccCCCCCCccCH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAV-MT--ELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~-l~--~lgL~~~~~~~vg~~~~~~LSG 190 (508)
.+|+++|.|.|+|.||.. |++||+.++. . ..+.+|..+.++.+ +. ..+|.+-.||.+| +...+|||
T Consensus 1057 lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~----~-~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vG-erG~QLSG 1129 (1228)
T KOG0055|consen 1057 LNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGS----E-EVSEEEIIEAAKLANAHNFISSLPQGYDTRVG-ERGVQLSG 1129 (1228)
T ss_pred CCHHHHHHhcceeccCchhhcc-cHHHHHhccC----C-CCCHHHHHHHHHHhhhHHHHhcCcCcccCccC-cccCcCCc
Confidence 468899999999999975 9999999982 1 24555544433222 11 1378888999999 45568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
|||||++||||+++||+||||||.||+||+++.+.+.+.|.+.. .|+|.|++.|+++. + +.+|.|.|+++|+|++.|
T Consensus 1130 GQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLST-I-qnaD~I~Vi~~G~VvE~G 1206 (1228)
T KOG0055|consen 1130 GQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLST-I-QNADVIAVLKNGKVVEQG 1206 (1228)
T ss_pred hHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhh-h-hcCCEEEEEECCEEEecc
Confidence 99999999999999999999999999999999999999999975 58999999999973 4 679999999999999999
Q ss_pred ChhhHHH
Q 010509 271 EASGAMN 277 (508)
Q Consensus 271 ~~~~~~~ 277 (508)
+-+++.+
T Consensus 1207 tH~~L~~ 1213 (1228)
T KOG0055|consen 1207 THDELLA 1213 (1228)
T ss_pred cHHHHHh
Confidence 9888876
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=355.82 Aligned_cols=199 Identities=30% Similarity=0.493 Sum_probs=169.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++|+.. ++++|+|+|++++|||.++|+||||||||||+|+|+|+++|++|+|.+||+++.+
T Consensus 320 ~i~~~~v~f~y~~~-----------~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~ 388 (529)
T TIGR02857 320 SLEFSGLSVAYPGR-----------RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLAD 388 (529)
T ss_pred eEEEEEEEEECCCC-----------CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhh
Confidence 69999999998521 2469999999999999999999999999999999999999999999999998753
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-------CKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~ 186 (508)
.+++.++||+|++.+++ .|++||+.++. + ..++ +.++++++..++.+ -.||.+|. ...
T Consensus 389 ~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~ 457 (529)
T TIGR02857 389 ADADSWRDQIAWVPQHPFLFA-GTIAENIRLAR----P-DASD----AEIRRALERAGLDEFVAALPQGLDTLIGE-GGA 457 (529)
T ss_pred CCHHHHHhheEEEcCCCcccC-cCHHHHHhccC----C-CCCH----HHHHHHHHHcCcHHHHHhCcccccchhcc-ccc
Confidence 56789999999999997 49999998753 1 1232 34556666666653 34777763 456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
.||||||||++|||+|+++|++++||||||+||+.+...+.+.|+++. +++|+|+++|+++. + +.||++++|
T Consensus 458 ~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~-~-~~~d~i~~l 529 (529)
T TIGR02857 458 GLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLAL-A-ERADRIVVL 529 (529)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-HhCCEEEeC
Confidence 899999999999999999999999999999999999999999999985 58999999999863 4 679999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=316.41 Aligned_cols=235 Identities=24% Similarity=0.332 Sum_probs=195.3
Q ss_pred eEEEEeEEEEEeccccc--c------CcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEE
Q 010509 38 TLKFEDIVYKIKMKKGF--Y------GSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRIT 109 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~--~------~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~ 109 (508)
++..+||++.+...-.. . -.+.++....+++|+||+|++|++++++|||||||||+||+|+|++.|++|.|.
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~ 82 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR 82 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEE
Confidence 46678887765432110 0 001222234589999999999999999999999999999999999999999999
Q ss_pred ECCEeCCh---hccccEEEEe-cCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 010509 110 YNGKPFSN---QMTRNTGFVT-QEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT 185 (508)
Q Consensus 110 ~~G~~~~~---~~~~~i~yv~-Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 185 (508)
++|.+.-+ .+-+.+++|+ |...+...+.+.|.+....... +.+.++-+++.+.+.+.++|++..+..+
T Consensus 83 V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~v----- 154 (325)
T COG4586 83 VNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPV----- 154 (325)
T ss_pred ecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhh-----
Confidence 99997632 3445677775 5556766777888877654433 4677888899999999999998887776
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
|.||-|||.|+.||.+|+++|+||||||||=|||..++..+.+.|++..+ .+.||+.+||+.+ .+..+||||++|+.|
T Consensus 155 r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~G 233 (325)
T COG4586 155 RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQG 233 (325)
T ss_pred hhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeCC
Confidence 69999999999999999999999999999999999999999999999975 5999999999997 588999999999999
Q ss_pred eEEEEcChhhHHHHHHh
Q 010509 265 YPLYSGEASGAMNYFAS 281 (508)
Q Consensus 265 ~iv~~G~~~~~~~~f~~ 281 (508)
+++|+|+.++..+-|..
T Consensus 234 qlv~dg~l~~l~~~f~~ 250 (325)
T COG4586 234 QLVFDGTLAQLQEQFGP 250 (325)
T ss_pred cEeecccHHHHHHHhCC
Confidence 99999999998876653
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=352.59 Aligned_cols=204 Identities=21% Similarity=0.273 Sum_probs=171.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++. ++++|+|+|+++++||.+||+||||||||||+++|+|+++|++|+|.+||+++.+
T Consensus 322 ~i~~~~v~f~y~~------------~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~ 389 (547)
T PRK10522 322 TLELRNVTFAYQD------------NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTA 389 (547)
T ss_pred eEEEEEEEEEeCC------------CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCC
Confidence 6999999999851 2469999999999999999999999999999999999999999999999999863
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
..+++++||+|++.+++. |++|| . .. ..++.+++.++.+++.+..+..-|......||||||
T Consensus 390 ~~~~~~~~~i~~v~q~~~lf~~-ti~~n---~------~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~ 455 (547)
T PRK10522 390 EQPEDYRKLFSAVFTDFHLFDQ-LLGPE---G------KP----ANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQK 455 (547)
T ss_pred CCHHHHhhheEEEecChhHHHH-hhccc---c------Cc----hHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHH
Confidence 467899999999988874 77776 1 11 123456788889998765432111001358999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
||++||||++.+|++|+||||||+||+.++..+.+.|.+..+ .|+|+|+++|+++ ..+.+|++++|++|+++..
T Consensus 456 qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 456 KRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999987643 5899999999985 4567999999999999866
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=385.63 Aligned_cols=213 Identities=21% Similarity=0.295 Sum_probs=183.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++|+. +.+++|+|+|++|+|||.+||+||||||||||+++|.|++.|++|+|.+||.++.+
T Consensus 1234 ~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~ 1302 (1495)
T PLN03232 1234 SIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAK 1302 (1495)
T ss_pred cEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhh
Confidence 5999999999851 12569999999999999999999999999999999999999999999999999864
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-------CKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~ 186 (508)
.+|++++||||++.+|+. |++|||..+. ..+++ .+.++++..++.+ -.|+.+| +...
T Consensus 1303 i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~-e~G~ 1370 (1495)
T PLN03232 1303 FGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHNDA----DLWEALERAHIKDVIDRNPFGLDAEVS-EGGE 1370 (1495)
T ss_pred CCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCCHH----HHHHHHHHcCCHHHHHhCcCCCCceec-CCCC
Confidence 578899999999999986 9999997531 22333 3455666666543 4577776 3456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|+|+++|+++. + ..||||++|++|++
T Consensus 1371 ~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~t-i-~~~DrIlVL~~G~i 1447 (1495)
T PLN03232 1371 NFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNT-I-IDCDKILVLSSGQV 1447 (1495)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEECCEE
Confidence 899999999999999999999999999999999999999999999874 47999999999964 4 44899999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
++.|++++..
T Consensus 1448 vE~Gt~~eLl 1457 (1495)
T PLN03232 1448 LEYDSPQELL 1457 (1495)
T ss_pred EEECCHHHHH
Confidence 9999999875
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=386.66 Aligned_cols=214 Identities=21% Similarity=0.312 Sum_probs=184.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++|++++|+. +.+++|+|+|++|+|||.+||+|+||||||||+++|.|++.|++|+|.+||.++.+
T Consensus 1237 ~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~ 1305 (1622)
T PLN03130 1237 SIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISK 1305 (1622)
T ss_pred cEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEeccc
Confidence 6999999999851 12469999999999999999999999999999999999999999999999999864
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-------ECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~ 186 (508)
.+|+++++||||+.+|+. |++|||..+. ..+++ .+.++++..++. +-.|+.+| +...
T Consensus 1306 i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~tde----ei~~Al~~a~l~~~I~~lp~GLdt~Vg-e~G~ 1373 (1622)
T PLN03130 1306 FGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHNDA----DLWESLERAHLKDVIRRNSLGLDAEVS-EAGE 1373 (1622)
T ss_pred CCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCCHH----HHHHHHHHcCcHHHHHhCccccCcccc-CCCC
Confidence 578899999999999986 9999997542 12333 345555555553 34677776 3456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|+|+++|+++. + ..||||++|++|++
T Consensus 1374 nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t-I-~~~DrIlVLd~G~I 1450 (1622)
T PLN03130 1374 NFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT-I-IDCDRILVLDAGRV 1450 (1622)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH-H-HhCCEEEEEECCEE
Confidence 899999999999999999999999999999999999999999999975 47999999999974 4 34899999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
++.|+++++.+
T Consensus 1451 vE~Gt~~eLl~ 1461 (1622)
T PLN03130 1451 VEFDTPENLLS 1461 (1622)
T ss_pred EEeCCHHHHHh
Confidence 99999998864
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=300.94 Aligned_cols=220 Identities=23% Similarity=0.394 Sum_probs=194.5
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECC-EeC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNG-KPF 115 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G-~~~ 115 (508)
..|+++|++++++ +.++|+|+||++.+||+-+|+|||||||||+|++|+|..+|++|++.++| .++
T Consensus 4 ~iL~~~~vsVsF~-------------GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl 70 (249)
T COG4674 4 IILYLDGVSVSFG-------------GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDL 70 (249)
T ss_pred ceEEEeceEEEEc-------------ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhh
Confidence 4689999999986 56799999999999999999999999999999999999999999999999 676
Q ss_pred Ch-----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC-----CCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 010509 116 SN-----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPN-----SFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT 185 (508)
Q Consensus 116 ~~-----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 185 (508)
.+ ..+..||--+|.|..|+.+||+|||..+.....+- .....+.+++++++|+..||.+.+|...+
T Consensus 71 ~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~---- 146 (249)
T COG4674 71 TKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA---- 146 (249)
T ss_pred ccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh----
Confidence 53 23567999999999999999999999875422110 01223445789999999999999998876
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
.||-||||++.|++-++.+|++|+||||++|+-.....+.-++|++++. +++|+++.||+. .+.+++|+|.+|++|.
T Consensus 147 -~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVlh~G~ 223 (249)
T COG4674 147 -LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMG-FVREIADKVTVLHEGS 223 (249)
T ss_pred -hhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHH-HHHHhhheeEEEeccc
Confidence 8999999999999999999999999999999999999999999999986 589999999996 7889999999999999
Q ss_pred EEEEcChhhHH
Q 010509 266 PLYSGEASGAM 276 (508)
Q Consensus 266 iv~~G~~~~~~ 276 (508)
+...|+.+++.
T Consensus 224 VL~EGsld~v~ 234 (249)
T COG4674 224 VLAEGSLDEVQ 234 (249)
T ss_pred eeecccHHHhh
Confidence 99999988764
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-39 Score=315.82 Aligned_cols=188 Identities=21% Similarity=0.279 Sum_probs=157.9
Q ss_pred eeeceEEEEe-----CCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHH
Q 010509 66 ILKGITGMVK-----PGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTE 140 (508)
Q Consensus 66 iL~~vs~~v~-----~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E 140 (508)
.++|++++++ +||+++|+||||||||||+++|+|+++|++|+|.++|+ .++|++|+....+.+||+|
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~--------~i~~~~q~~~~~~~~tv~e 80 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD--------TVSYKPQYIKADYEGTVRD 80 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc--------eEEEecccccCCCCCCHHH
Confidence 5666666665 79999999999999999999999999999999999985 4899999988777899999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 010509 141 TMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDS 220 (508)
Q Consensus 141 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~ 220 (508)
++.+...... . .....+++++.+||.+..++.++ .|||||||||+||++|+.+|++++|||||++||+
T Consensus 81 ~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~ 148 (246)
T cd03237 81 LLSSITKDFY----T---HPYFKTEIAKPLQIEQILDREVP-----ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDV 148 (246)
T ss_pred HHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 9976432110 1 12345788999999887777664 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEE--EEcChhh
Q 010509 221 TIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL--YSGEASG 274 (508)
Q Consensus 221 ~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv--~~G~~~~ 274 (508)
.++..+.+.|+++++ .|+|||++||++. .+..++|++++|+++..+ ..+++.+
T Consensus 149 ~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~ 204 (246)
T cd03237 149 EQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQS 204 (246)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence 999999999999976 4899999999986 577899999999765433 3445544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=333.83 Aligned_cols=224 Identities=27% Similarity=0.416 Sum_probs=192.2
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
.-.|.++++++--+ ..++++|+|+||.+.+||.++|+||||||||||.|+|.|..+|.+|.|.+||-++
T Consensus 332 ~g~L~Ve~l~~~PP-----------g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l 400 (580)
T COG4618 332 QGALSVERLTAAPP-----------GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADL 400 (580)
T ss_pred CceeeEeeeeecCC-----------CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhh
Confidence 34799999998322 1257899999999999999999999999999999999999999999999999987
Q ss_pred Ch----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHH-----HHHHHHHHHHHcCCCcccccccCCCCCC
Q 010509 116 SN----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKE-----KIKCAEAVMTELGLSECKNSLIGGPLTR 186 (508)
Q Consensus 116 ~~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 186 (508)
.. .+.++|||+||+-.||+. ||.||+.=. .++.+.+. +.+.+.|++ +.+.+-.||.+|+ -..
T Consensus 401 ~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf-----~~~~d~~kIieAA~lAgvHelI--l~lP~GYdT~iG~-~G~ 471 (580)
T COG4618 401 RQWDREQLGRHIGYLPQDVELFDG-TIAENIARF-----GEEADPEKVIEAARLAGVHELI--LRLPQGYDTRIGE-GGA 471 (580)
T ss_pred hcCCHHHhccccCcCcccceecCC-cHHHHHHhc-----cccCCHHHHHHHHHHcChHHHH--HhCcCCccCccCC-CCC
Confidence 53 567899999999999997 999999522 22222222 122233443 4677888999994 456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||+++||||-.+|.+++||||-|+||......+.+.|.+++++|.|+|+++|.|+ +...+|+|++|++|++
T Consensus 472 ~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~~ 549 (580)
T COG4618 472 TLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRI 549 (580)
T ss_pred CCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeeecCChH
Confidence 89999999999999999999999999999999999999999999999999999999999996 5678999999999999
Q ss_pred EEEcChhhHHHHHHh
Q 010509 267 LYSGEASGAMNYFAS 281 (508)
Q Consensus 267 v~~G~~~~~~~~f~~ 281 (508)
-.+|+.++++.....
T Consensus 550 ~~FG~r~eVLa~~~~ 564 (580)
T COG4618 550 AAFGPREEVLAKVLR 564 (580)
T ss_pred HhcCCHHHHHHHhcC
Confidence 999999999998764
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=350.84 Aligned_cols=209 Identities=27% Similarity=0.354 Sum_probs=173.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++||+++++. ++++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.+++
T Consensus 4 ~i~~~nls~~~~~------------~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~----- 66 (552)
T TIGR03719 4 IYTMNRVSKVVPP------------KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP----- 66 (552)
T ss_pred EEEEeeEEEecCC------------CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----
Confidence 6899999998741 35699999999999999999999999999999999999999999999975
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHh-c------------CCCCCCHH--------------------HHHHHHH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALL-Q------------LPNSFTEK--------------------EKIKCAE 164 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l-~------------~~~~~~~~--------------------~~~~~v~ 164 (508)
+..+|||+|++.+++.+||+||+.++... + ......+. +..++++
T Consensus 67 --~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (552)
T TIGR03719 67 --GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLE 144 (552)
T ss_pred --CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHH
Confidence 24699999999999999999999875321 0 00000000 0124567
Q ss_pred HHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEe
Q 010509 165 AVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTI 244 (508)
Q Consensus 165 ~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~ 244 (508)
++++.+|+.. .++.+ ..|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.|||++|
T Consensus 145 ~~l~~~~l~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiis 215 (552)
T TIGR03719 145 IAMDALRCPP-WDADV-----TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVT 215 (552)
T ss_pred HHHhhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEe
Confidence 7888888854 45555 489999999999999999999999999999999999999999999886 35999999
Q ss_pred cCcchHHHhhccEEEEEeCCeEE-EEcChhhH
Q 010509 245 HQPSNMLYYMFHKVLLLSEGYPL-YSGEASGA 275 (508)
Q Consensus 245 H~~~~~~~~~~D~v~lL~~G~iv-~~G~~~~~ 275 (508)
|++. .+...||++++|++|+++ +.|+.++.
T Consensus 216 Hd~~-~~~~~~d~v~~l~~g~i~~~~g~~~~~ 246 (552)
T TIGR03719 216 HDRY-FLDNVAGWILELDRGRGIPWEGNYSSW 246 (552)
T ss_pred CCHH-HHHhhcCeEEEEECCEEEEecCCHHHH
Confidence 9986 577899999999999976 78887754
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=313.53 Aligned_cols=195 Identities=28% Similarity=0.482 Sum_probs=169.7
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++||++.+..... ++ + .....+++||||++++||.++|+|+||||||||-|+|.|+.+|++|+|.++|+++.
T Consensus 3 ~ll~v~~l~k~f~~~~~-~~--~-~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~ 78 (268)
T COG4608 3 PLLEVKNLKKYFPVGKG-FG--K-KRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDIT 78 (268)
T ss_pred ceEEEeccEEEEecccc-cC--c-ccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchh
Confidence 36899999999875432 11 1 11257999999999999999999999999999999999999999999999999864
Q ss_pred hhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCccCHHHHHH
Q 010509 117 NQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 117 ~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqR 195 (508)
... ++++.+++.++|+.+||.+ .++ .+++++|||||||
T Consensus 79 ~~~------------------------------------~~~~~~~v~elL~~Vgl~~~~~~-----ryPhelSGGQrQR 117 (268)
T COG4608 79 KLS------------------------------------KEERRERVLELLEKVGLPEEFLY-----RYPHELSGGQRQR 117 (268)
T ss_pred hcc------------------------------------hhHHHHHHHHHHHHhCCCHHHhh-----cCCcccCchhhhh
Confidence 311 3456678999999999864 333 4568999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
+.|||||+.+|+++++|||+|.||...+.+++++|+++.++ |.|.++++||.+ .+.+++||+.+|..|++|..|+.++
T Consensus 118 i~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy~G~iVE~g~~~~ 196 (268)
T COG4608 118 IGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMYLGKIVEIGPTEE 196 (268)
T ss_pred HHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEecCceeEecCHHH
Confidence 99999999999999999999999999999999999999865 999999999986 6889999999999999999999998
Q ss_pred HHH
Q 010509 275 AMN 277 (508)
Q Consensus 275 ~~~ 277 (508)
+..
T Consensus 197 ~~~ 199 (268)
T COG4608 197 VFS 199 (268)
T ss_pred Hhh
Confidence 754
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-39 Score=322.25 Aligned_cols=225 Identities=26% Similarity=0.422 Sum_probs=197.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~~G 112 (508)
.|+++||++.+.... +...++++|||++++||.+||+|+||||||-..+.+.|+++ .-+|+|.|+|
T Consensus 6 lL~v~nLsV~f~~~~---------~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G 76 (534)
T COG4172 6 LLSIRNLSVAFHQEG---------GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDG 76 (534)
T ss_pred ceeeeccEEEEecCC---------cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcC
Confidence 589999999887432 35789999999999999999999999999999999999983 2479999999
Q ss_pred EeCCh----hc---c-ccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCC
Q 010509 113 KPFSN----QM---T-RNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGG 182 (508)
Q Consensus 113 ~~~~~----~~---~-~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 182 (508)
+++-. .. | .+|+++||++ .|.|-.|+.+.+.-..++. .+.++++.++++.++|+.+|+.+...++ +
T Consensus 77 ~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl--~ 152 (534)
T COG4172 77 EDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRL--D 152 (534)
T ss_pred hhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhh--h
Confidence 98721 22 2 3799999998 4888889998887765543 4667888999999999999998766544 4
Q ss_pred CCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEE
Q 010509 183 PLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 183 ~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
.+|++|||||||||.||+||+++|++|+.||||+.||...+.+|+++|++|.++ |..++++|||++ .+.+++|||++|
T Consensus 153 ~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~-iVr~~ADrV~VM 231 (534)
T COG4172 153 AYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG-IVRKFADRVYVM 231 (534)
T ss_pred hCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH-HHHHhhhhEEEE
Confidence 788999999999999999999999999999999999999999999999999764 999999999997 688999999999
Q ss_pred eCCeEEEEcChhhHH
Q 010509 262 SEGYPLYSGEASGAM 276 (508)
Q Consensus 262 ~~G~iv~~G~~~~~~ 276 (508)
.+|++++.|+.++++
T Consensus 232 ~~G~ivE~~~t~~lF 246 (534)
T COG4172 232 QHGEIVETGTTETLF 246 (534)
T ss_pred eccEEeecCcHHHHh
Confidence 999999999987764
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=332.11 Aligned_cols=232 Identities=28% Similarity=0.437 Sum_probs=193.7
Q ss_pred hhhcccccCCCceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCc
Q 010509 25 EASDVFTRAKHPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI 104 (508)
Q Consensus 25 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~ 104 (508)
+.+.+.+...+.-.++++|+++.|+ .+|++|+||||++.||+.+|++||||+||||++|+|.......
T Consensus 524 d~P~a~pl~~~~G~i~fsnvtF~Y~------------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~ 591 (790)
T KOG0056|consen 524 DLPGAPPLKVTQGKIEFSNVTFAYD------------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN 591 (790)
T ss_pred cCCCCCCccccCCeEEEEEeEEecC------------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc
Confidence 3344444444445799999999987 2588999999999999999999999999999999999999999
Q ss_pred ccEEEECCEeCCh----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHH--HHH-HHcCCCcccc
Q 010509 105 NGRITYNGKPFSN----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAE--AVM-TELGLSECKN 177 (508)
Q Consensus 105 ~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~--~~l-~~lgL~~~~~ 177 (508)
+|.|.++|+++.. ..|+.||.||||..+|++ |+..|+.++- | +.+.++..+.++ .+- +.++..+..+
T Consensus 592 sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak----~-~AsneevyaAAkAA~IHdrIl~fPegY~ 665 (790)
T KOG0056|consen 592 SGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAK----P-SASNEEVYAAAKAAQIHDRILQFPEGYN 665 (790)
T ss_pred CceEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecC----C-CCChHHHHHHHHHhhHHHHHhcCchhhh
Confidence 9999999999864 578899999999999976 9999998862 2 224444333322 222 2367888899
Q ss_pred cccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccE
Q 010509 178 SLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHK 257 (508)
Q Consensus 178 ~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~ 257 (508)
|++|. ..-.|||||||||+|||+++.+|.+++|||.||+||..+..+|...|.+++. ++|-|++.|.++. + -.+|.
T Consensus 666 t~VGE-RGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST-i-vnAD~ 741 (790)
T KOG0056|consen 666 TRVGE-RGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST-I-VNADL 741 (790)
T ss_pred hhhhh-cccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh-e-ecccE
Confidence 99994 3446899999999999999999999999999999999999999999999986 6788889999985 3 35899
Q ss_pred EEEEeCCeEEEEcChhhHHHH
Q 010509 258 VLLLSEGYPLYSGEASGAMNY 278 (508)
Q Consensus 258 v~lL~~G~iv~~G~~~~~~~~ 278 (508)
|+++++|+|++.|.-++.+..
T Consensus 742 ILvi~~G~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 742 ILVISNGRIVERGRHEELLKR 762 (790)
T ss_pred EEEEeCCeEeecCcHHHHHhc
Confidence 999999999999998887653
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=348.53 Aligned_cols=210 Identities=20% Similarity=0.286 Sum_probs=173.1
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|++++|+... ..++.+|+|+|+++++||.++|+||||||||||+++|+|.++|++|+|.++|.++.
T Consensus 336 ~~i~~~~v~f~y~~~~--------~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~ 407 (555)
T TIGR01194 336 DSIELKDVHMNPKAPE--------GSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVS 407 (555)
T ss_pred ceEEEEEEEEEeCCCC--------CCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence 3699999999986210 01246999999999999999999999999999999999999999999999999986
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCC-CCCCccCHH
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGG-PLTRGVSGG 191 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~-~~~~~LSGG 191 (508)
+ ..++.++||+|++.+++. |+++|.. + . ..+++++++++.+++.+..+...+. .....||||
T Consensus 408 ~~~~~~~~~~i~~v~q~~~lf~~-ti~~n~~-------~-~----~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgG 474 (555)
T TIGR01194 408 ADSRDDYRDLFSAIFADFHLFDD-LIGPDEG-------E-H----ASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTG 474 (555)
T ss_pred CCCHHHHHhhCcEEccChhhhhh-hhhcccc-------c-c----hhHHHHHHHHHHcCCchhhcccccccCCcccCCHH
Confidence 4 467889999999998875 7888731 1 1 1234577889999998765443221 113579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL-KLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~-~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
||||++|||+++.+|++++|||||++||+.+...+.+.+. .+..+|+|+|+++|+++ ..+.+|++++|++|+++..
T Consensus 475 q~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 475 QQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999998664 46567899999999986 3468999999999999754
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=346.30 Aligned_cols=205 Identities=21% Similarity=0.352 Sum_probs=172.4
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 323 ~~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--- 386 (556)
T PRK11819 323 KVIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGET--- 386 (556)
T ss_pred eEEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc---
Confidence 4699999999875 357999999999999999999999999999999999999999999999542
Q ss_pred hhccccEEEEecCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCccCHHHHH
Q 010509 117 NQMTRNTGFVTQED-VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 117 ~~~~~~i~yv~Q~~-~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerq 194 (508)
..+||++|+. .+++.+||.|++.+...... .... ...++++++.+|+.+ ..++.++ +|||||||
T Consensus 387 ----~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~~q 452 (556)
T PRK11819 387 ----VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKVG-----VLSGGERN 452 (556)
T ss_pred ----eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCchh-----hCCHHHHH
Confidence 1599999996 78889999999987643211 1111 123457899999964 4566664 89999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC-CeEE-EEcCh
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE-GYPL-YSGEA 272 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~-G~iv-~~G~~ 272 (508)
||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. | |||++|||+. .+..+||++++|++ |++. +.|+.
T Consensus 453 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~ 528 (556)
T PRK11819 453 RLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGNF 528 (556)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCCH
Confidence 9999999999999999999999999999999999999873 4 8999999986 57789999999985 7876 57766
Q ss_pred hhH
Q 010509 273 SGA 275 (508)
Q Consensus 273 ~~~ 275 (508)
++.
T Consensus 529 ~~~ 531 (556)
T PRK11819 529 QEY 531 (556)
T ss_pred HHH
Confidence 543
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=380.65 Aligned_cols=214 Identities=18% Similarity=0.260 Sum_probs=184.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++|+.. .+.+|+|+|++|+|||.+||+|+||||||||+++|.|++.|++|+|.+||.++.+
T Consensus 1284 ~I~f~nVsf~Y~~~-----------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~ 1352 (1522)
T TIGR00957 1284 RVEFRNYCLRYRED-----------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAK 1352 (1522)
T ss_pred cEEEEEEEEEeCCC-----------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccc
Confidence 69999999998621 2469999999999999999999999999999999999999999999999999864
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-------ECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~ 186 (508)
.+|++++|||||+.+|+. |++|||.... ..+++ .+.++++..++. +-.|+.+|. ...
T Consensus 1353 i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~ 1420 (1522)
T TIGR00957 1353 IGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSDE----EVWWALELAHLKTFVSALPDKLDHECAE-GGE 1420 (1522)
T ss_pred cCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCCHH----HHHHHHHHcCcHHHHhhCccCCCceecC-CCC
Confidence 578899999999999986 9999996321 22333 345666666664 345777763 456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|+|+++|+++. + ..+|||++|++|++
T Consensus 1421 ~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~t-i-~~~DrIlVld~G~I 1497 (1522)
T TIGR00957 1421 NLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNT-I-MDYTRVIVLDKGEV 1497 (1522)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCEEEEEECCEE
Confidence 799999999999999999999999999999999999999999999864 47999999999974 4 45899999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
++.|++++..+
T Consensus 1498 vE~G~~~eLl~ 1508 (1522)
T TIGR00957 1498 AEFGAPSNLLQ 1508 (1522)
T ss_pred EEECCHHHHHh
Confidence 99999998864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=380.22 Aligned_cols=214 Identities=21% Similarity=0.328 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++|++++|+. +...+|+||||+|+|||.+||+|+||||||||+++|.|++.|++|+|.+||+++.+
T Consensus 1308 ~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~ 1376 (1560)
T PTZ00243 1308 SLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGA 1376 (1560)
T ss_pred eEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccc
Confidence 5999999999862 12459999999999999999999999999999999999999999999999999864
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-------CKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~ 186 (508)
.+|+.++||||++.+|+. |++|||... ...++ +.+.++++..|+.+ -.|+.+|. ...
T Consensus 1377 i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge-~G~ 1444 (1560)
T PTZ00243 1377 YGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEASS----AEVWAALELVGLRERVASESEGIDSRVLE-GGS 1444 (1560)
T ss_pred CCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCCCH----HHHHHHHHHCCChHHHhhCcccccccccC-CcC
Confidence 578899999999999986 999999632 12233 34667777777754 35777773 456
Q ss_pred ccCHHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 187 GVSGGERKRVSIGQEILIN-PSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~-P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
.||||||||++|||||+++ |+||+||||||+||+.+...|.+.|++.. +++|+|+++|+++. + ..||+|++|++|+
T Consensus 1445 nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~t-i-~~~DrIlVLd~G~ 1521 (1560)
T PTZ00243 1445 NYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHT-V-AQYDKIIVMDHGA 1521 (1560)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHH-H-HhCCEEEEEECCE
Confidence 8999999999999999996 89999999999999999999999999864 47999999999863 4 5689999999999
Q ss_pred EEEEcChhhHHH
Q 010509 266 PLYSGEASGAMN 277 (508)
Q Consensus 266 iv~~G~~~~~~~ 277 (508)
+++.|+++++.+
T Consensus 1522 VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1522 VAEMGSPRELVM 1533 (1560)
T ss_pred EEEECCHHHHHh
Confidence 999999998863
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=345.38 Aligned_cols=200 Identities=23% Similarity=0.320 Sum_probs=173.4
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
+..++++|+++.++ + ..|+++|+++++||+++|+||||||||||+|+|+|+++|++|+|.++
T Consensus 338 ~~~l~~~~ls~~~~-------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---- 399 (590)
T PRK13409 338 ETLVEYPDLTKKLG-------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---- 399 (590)
T ss_pred ceEEEEcceEEEEC-------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe----
Confidence 34699999998764 2 24899999999999999999999999999999999999999999986
Q ss_pred ChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 116 SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 116 ~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++|++|+..+.+.+||+|++.+.... ... ...++++++.+||.+..++.++ +||||||||
T Consensus 400 -----~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~~-----~LSGGe~QR 461 (590)
T PRK13409 400 -----LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKNVK-----DLSGGELQR 461 (590)
T ss_pred -----eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCcc-----cCCHHHHHH
Confidence 1499999998888899999999875321 111 1246789999999988887765 899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
|+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++|||+. .+..++||+++|+ |++...|...
T Consensus 462 vaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~~~~~~g~~~ 538 (590)
T PRK13409 462 VAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-GEPGKHGHAS 538 (590)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-CcceeeeecC
Confidence 99999999999999999999999999999999999999864 899999999986 5778999999996 4887777643
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=376.39 Aligned_cols=213 Identities=22% Similarity=0.395 Sum_probs=174.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEEC-CEeCC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYN-GKPFS 116 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~-G~~~~ 116 (508)
.|+++||+++|+.. .++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++ |+++.
T Consensus 382 ~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~ 451 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR----------KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLK 451 (1466)
T ss_pred cEEEEEEEEEcCCC----------CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchh
Confidence 69999999998621 12469999999999999999999999999999999999999999999994 67764
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHh-cC---------CCC-----------------------------
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALL-QL---------PNS----------------------------- 153 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l-~~---------~~~----------------------------- 153 (508)
+ .+|+.+|||+|++.+|+. |++||+.++... +. +..
T Consensus 452 ~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (1466)
T PTZ00265 452 DINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTD 530 (1466)
T ss_pred hCCHHHHHHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccc
Confidence 2 457789999999999985 999999986310 00 000
Q ss_pred C---------CHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 010509 154 F---------TEKEKIKCAEAVMTELGLSE-------CKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSG 217 (508)
Q Consensus 154 ~---------~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsg 217 (508)
. ......+.+.++++.+++.+ ..||.+| .....||||||||++|||||+.+|+|||||||||+
T Consensus 531 ~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg-~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSa 609 (1466)
T PTZ00265 531 SNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVG-SNASKLSGGQKQRISIARAIIRNPKILILDEATSS 609 (1466)
T ss_pred hhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeC-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 0 00011245677777776654 3467776 34678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 218 LDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 218 LD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
||+.++..+.+.|+++++ +|+|+|+++|+++. + +.||+|++|++|
T Consensus 610 LD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~-i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 610 LDNKSEYLVQKTINNLKGNENRITIIIAHRLST-I-RYANTIFVLSNR 655 (1466)
T ss_pred cCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH-H-HhCCEEEEEeCC
Confidence 999999999999999975 58999999999974 4 689999999986
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=343.72 Aligned_cols=204 Identities=24% Similarity=0.375 Sum_probs=171.5
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|++++++ ++.+|+|+|++|++||+++|+|||||||||||++|+|+.+|++|+|.+++.
T Consensus 321 ~~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~--- 384 (552)
T TIGR03719 321 KVIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGET--- 384 (552)
T ss_pred eEEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCc---
Confidence 3699999999874 357999999999999999999999999999999999999999999999542
Q ss_pred hhccccEEEEecCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCccCHHHHH
Q 010509 117 NQMTRNTGFVTQED-VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 117 ~~~~~~i~yv~Q~~-~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerq 194 (508)
..+||++|++ .+++.+||.|++.+..... ..... ..+++++++.+|+.+ ..++.++ .|||||||
T Consensus 385 ----~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGe~q 450 (552)
T TIGR03719 385 ----VKLAYVDQSRDALDPNKTVWEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQKKVG-----QLSGGERN 450 (552)
T ss_pred ----eEEEEEeCCccccCCCCcHHHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhcCchh-----hCCHHHHH
Confidence 1599999996 4888899999998864321 11111 123567899999964 4566654 89999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC-CeEE-EEcCh
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE-GYPL-YSGEA 272 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~-G~iv-~~G~~ 272 (508)
||+||++|+.+|++|||||||+|||+.++..+.+.|+++. | |||++|||+. .+..+||++++|++ |++. +.|+.
T Consensus 451 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~~ 526 (552)
T TIGR03719 451 RVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGNY 526 (552)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCCH
Confidence 9999999999999999999999999999999999999983 3 8999999986 57789999999986 5876 66766
Q ss_pred hh
Q 010509 273 SG 274 (508)
Q Consensus 273 ~~ 274 (508)
++
T Consensus 527 ~~ 528 (552)
T TIGR03719 527 SE 528 (552)
T ss_pred HH
Confidence 54
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=313.10 Aligned_cols=189 Identities=25% Similarity=0.372 Sum_probs=160.6
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEE-----------ECCEeCCh---hcc---ccEEEEe
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRIT-----------YNGKPFSN---QMT---RNTGFVT 127 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~-----------~~G~~~~~---~~~---~~i~yv~ 127 (508)
.+|+|+| .+++||+++|+||||||||||||+|+|+++|++|+|. ++|+++.. ..+ ..++|++
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~ 93 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKP 93 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeec
Confidence 5899999 5999999999999999999999999999999999996 78887643 111 2478999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCC
Q 010509 128 QEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPS 207 (508)
Q Consensus 128 Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~ 207 (508)
|+..+++. ++.+++.+.. .....++.++++++.+||.+..++.+ +.||||||||++||++|+.+|+
T Consensus 94 ~~~~~~~~-~~~~~i~~~l--------~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~ 159 (255)
T cd03236 94 QYVDLIPK-AVKGKVGELL--------KKKDERGKLDELVDQLELRHVLDRNI-----DQLSGGELQRVAIAAALARDAD 159 (255)
T ss_pred chhccCch-HHHHHHHHHh--------chhHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHhCCC
Confidence 99888874 8888887642 11233456789999999988777655 4899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 208 LLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 208 illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
+++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|+ |++.+.|
T Consensus 160 illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 160 FYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC-CCCCcce
Confidence 99999999999999999999999999877999999999986 5777899999995 5566544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=344.29 Aligned_cols=203 Identities=25% Similarity=0.407 Sum_probs=172.8
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..|+++|+++.++ ++.+|+|+|++|++||+++|+||||||||||||+|+|+.+|++|+|.+++.
T Consensus 311 ~~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--- 374 (638)
T PRK10636 311 PLLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG--- 374 (638)
T ss_pred ceEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC---
Confidence 3699999999875 357999999999999999999999999999999999999999999999742
Q ss_pred hhccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCccCHHHH
Q 010509 117 NQMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 117 ~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGer 193 (508)
..+||++|+. .+.+..|+.+++.. . . .....++++++|+.+++. +..++.++ .||||||
T Consensus 375 ----~~igy~~Q~~~~~l~~~~~~~~~~~~---~--~----~~~~~~~~~~~L~~~~l~~~~~~~~~~-----~LSgGek 436 (638)
T PRK10636 375 ----IKLGYFAQHQLEFLRADESPLQHLAR---L--A----PQELEQKLRDYLGGFGFQGDKVTEETR-----RFSGGEK 436 (638)
T ss_pred ----EEEEEecCcchhhCCccchHHHHHHH---h--C----chhhHHHHHHHHHHcCCChhHhcCchh-----hCCHHHH
Confidence 2599999974 35566777776531 1 1 112345678999999996 35677665 8999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE-EEcCh
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL-YSGEA 272 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv-~~G~~ 272 (508)
|||+||++|+.+|++|||||||+|||+.++..+.+.|+++ .| |||++|||+. .+..+||++++|++|+++ +.|+.
T Consensus 437 qRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~~G~i~~~~g~~ 512 (638)
T PRK10636 437 ARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVHDGKVEPFDGDL 512 (638)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEECCEEEEcCCCH
Confidence 9999999999999999999999999999999999999987 34 9999999986 678899999999999997 88998
Q ss_pred hhHHH
Q 010509 273 SGAMN 277 (508)
Q Consensus 273 ~~~~~ 277 (508)
++..+
T Consensus 513 ~~~~~ 517 (638)
T PRK10636 513 EDYQQ 517 (638)
T ss_pred HHHHH
Confidence 87644
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=293.48 Aligned_cols=229 Identities=21% Similarity=0.313 Sum_probs=197.3
Q ss_pred eeEEEEeEEEEEeccccc-----------cCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcc
Q 010509 37 VTLKFEDIVYKIKMKKGF-----------YGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN 105 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~-----------~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~ 105 (508)
+.++++|+++.+...... +....+.....+|+||||++++||.++|+|+||||||||||+|+|.++|++
T Consensus 2 ~~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~ 81 (249)
T COG1134 2 VVIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTS 81 (249)
T ss_pred cEEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCC
Confidence 358889999887754210 111123456789999999999999999999999999999999999999999
Q ss_pred cEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 010509 106 GRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT 185 (508)
Q Consensus 106 G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 185 (508)
|+|.++|+-... +.- .-.+.|.+|.+||+.+-+.+. ++++++.+++++++++.-+|.+..|.++
T Consensus 82 G~v~v~G~v~~l-i~l-------g~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pv----- 145 (249)
T COG1134 82 GKVKVTGKVAPL-IEL-------GAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPV----- 145 (249)
T ss_pred ceEEEcceEehh-hhc-------ccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCch-----
Confidence 999999974321 111 223457799999999877653 5688999999999999999999999887
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
+.+|.||+-|++.|.+...+|+||++||-.+--|+.-++...+.++++.++++|||+++||++ .+.++|||+++|++|+
T Consensus 146 ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~~G~ 224 (249)
T COG1134 146 KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLEHGQ 224 (249)
T ss_pred hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEeCCE
Confidence 489999999999999999999999999999999999999999999999888899999999986 6899999999999999
Q ss_pred EEEEcChhhHHHHHHhc
Q 010509 266 PLYSGEASGAMNYFASI 282 (508)
Q Consensus 266 iv~~G~~~~~~~~f~~~ 282 (508)
+.+.|+++++.+++++.
T Consensus 225 i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 225 IRMEGSPEEVIPAYEED 241 (249)
T ss_pred EEEcCCHHHHHHHHHHh
Confidence 99999999999998763
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=370.83 Aligned_cols=213 Identities=21% Similarity=0.309 Sum_probs=183.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++||+++|+. +.+.+|+|+|++|+|||.+||+|+||||||||+++|.|++. .+|+|.+||.++++
T Consensus 1217 ~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~ 1284 (1490)
T TIGR01271 1217 QMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNS 1284 (1490)
T ss_pred eEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEccc
Confidence 6999999999862 13579999999999999999999999999999999999986 79999999999864
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-------CKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~ 186 (508)
.+|+.++||||++.+|+. |++|||.... ..++ +.+.++++..+|.+ -.|+.++. ...
T Consensus 1285 i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~td----eei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~ 1352 (1490)
T TIGR01271 1285 VTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWSD----EEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGY 1352 (1490)
T ss_pred CCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------CCCH----HHHHHHHHHCCCHHHHHhCcccccccccc-CCC
Confidence 578899999999999986 9999995421 1232 34667777777743 45777763 456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||||+++|+||+||||||+||..+...|.+.|++.. +++|||+++|+++. + ..+|||++|++|++
T Consensus 1353 nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~t-i-~~~DrIlvL~~G~i 1429 (1490)
T TIGR01271 1353 VLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEA-L-LECQQFLVIEGSSV 1429 (1490)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCEEEEEECCEE
Confidence 799999999999999999999999999999999999999999999875 47999999999863 4 45899999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
+..|+++++.+
T Consensus 1430 vE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1430 KQYDSIQKLLN 1440 (1490)
T ss_pred EEeCCHHHHHc
Confidence 99999998863
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=358.00 Aligned_cols=225 Identities=26% Similarity=0.436 Sum_probs=205.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.+..+++++.++.. +.+++++|+.|++||+.+++|+|||||||++|+|.|..+|++|++.++|.++..
T Consensus 564 ~~~~~~L~k~y~~~------------~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~ 631 (885)
T KOG0059|consen 564 ALVLNNLSKVYGGK------------DGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITV 631 (885)
T ss_pred eEEEcceeeeecch------------hhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCcccc
Confidence 47778888876521 118999999999999999999999999999999999999999999999998853
Q ss_pred -----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 -----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 -----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
+.++.+||+||+|.+.+.+|.+|++.+.++++ +.++++.++.++.+++.+||.+.+|+.++ .+|||+
T Consensus 632 ~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~-----~ySgG~ 703 (885)
T KOG0059|consen 632 STDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVR-----TYSGGN 703 (885)
T ss_pred ccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchh-----hCCCcc
Confidence 26788999999999999999999999999987 45566777789999999999999999886 899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
|||+++|.||+.+|++++|||||+|+||.++++++++++++.++|+.||+|||.++ +.+.+|||+.+|.+|+...-|++
T Consensus 704 kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR~aImv~G~l~ciGs~ 782 (885)
T KOG0059|consen 704 KRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTRTAIMVIGQLRCIGSP 782 (885)
T ss_pred hhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhhhheeecCeeEEecCh
Confidence 99999999999999999999999999999999999999999998889999999986 68899999999999999999999
Q ss_pred hhHHHHHHhcCC
Q 010509 273 SGAMNYFASIGY 284 (508)
Q Consensus 273 ~~~~~~f~~~g~ 284 (508)
++.+++|.. ||
T Consensus 783 q~LKsrfG~-gy 793 (885)
T KOG0059|consen 783 QELKSRYGS-GY 793 (885)
T ss_pred HHHHhhcCC-cE
Confidence 999988864 44
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=341.63 Aligned_cols=205 Identities=25% Similarity=0.439 Sum_probs=172.8
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..|+++|+++.++ ++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+ |.++
T Consensus 318 ~~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~- 382 (635)
T PRK11147 318 IVFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL- 382 (635)
T ss_pred ceEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc-
Confidence 4699999999875 357999999999999999999999999999999999999999999998 4332
Q ss_pred hhccccEEEEecCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCccCHHHHH
Q 010509 117 NQMTRNTGFVTQED-VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 117 ~~~~~~i~yv~Q~~-~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerq 194 (508)
.+||++|+. .+++.+||.|++.+.... . ... ....++.++++.+++. +..++.++ .|||||||
T Consensus 383 -----~i~y~~q~~~~l~~~~tv~e~l~~~~~~-~--~~~--~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekq 447 (635)
T PRK11147 383 -----EVAYFDQHRAELDPEKTVMDNLAEGKQE-V--MVN--GRPRHVLGYLQDFLFHPKRAMTPVK-----ALSGGERN 447 (635)
T ss_pred -----EEEEEeCcccccCCCCCHHHHHHhhccc-c--ccc--chHHHHHHHHHhcCCCHHHHhChhh-----hCCHHHHH
Confidence 599999985 588999999999875321 1 011 1234578899999996 45676665 89999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe-CCeEE-EEcCh
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS-EGYPL-YSGEA 272 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~-~G~iv-~~G~~ 272 (508)
||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||.. .+..+||++++|+ +|++. |.|+-
T Consensus 448 Rl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~y 523 (635)
T PRK11147 448 RLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGGY 523 (635)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCCH
Confidence 999999999999999999999999999999999999886 459999999975 5778999999998 89986 56665
Q ss_pred hhH
Q 010509 273 SGA 275 (508)
Q Consensus 273 ~~~ 275 (508)
++-
T Consensus 524 ~~y 526 (635)
T PRK11147 524 HDA 526 (635)
T ss_pred HHH
Confidence 543
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=291.22 Aligned_cols=218 Identities=23% Similarity=0.357 Sum_probs=178.6
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|+++.+... ...++++|+++|+++..|+++-|+|.||||||||+|+|+|.+.|++|+|.++|.++++
T Consensus 2 i~~~~~~~~f~~g--------~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~ 73 (263)
T COG1101 2 ISLSNATKTFFKG--------TPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKK 73 (263)
T ss_pred cccccceeeecCC--------ChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccC
Confidence 4455666554421 1236789999999999999999999999999999999999999999999999999975
Q ss_pred ---hccccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHHH--cCCCcccccccCCCCCCc
Q 010509 118 ---QMTRNTGFVTQEDV--LSPYLTVTETMVFTALLQLPNSFTE---KEKIKCAEAVMTE--LGLSECKNSLIGGPLTRG 187 (508)
Q Consensus 118 ---~~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~l~~~~~~~~---~~~~~~v~~~l~~--lgL~~~~~~~vg~~~~~~ 187 (508)
.....++-|+|++. ..|.||+.||+..+..-.-.++.+. ..+++...+-++. +||++..++++| -
T Consensus 74 ~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----l 148 (263)
T COG1101 74 SVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----L 148 (263)
T ss_pred CHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----h
Confidence 22346788999974 7999999999998653211122222 2333344455555 467888888887 7
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
|||||||-++++.|-++.|+||+|||-|++|||.++..+++.-.++.+ .+.|.+++||.++ .+.++-+|+++|++|+|
T Consensus 149 LSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~G~I 227 (263)
T COG1101 149 LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHSGKI 227 (263)
T ss_pred ccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeCCeE
Confidence 999999999999999999999999999999999999999999999875 4789999999997 46689999999999999
Q ss_pred EEEc
Q 010509 267 LYSG 270 (508)
Q Consensus 267 v~~G 270 (508)
|.+-
T Consensus 228 vlDv 231 (263)
T COG1101 228 VLDV 231 (263)
T ss_pred EEEc
Confidence 9663
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=278.47 Aligned_cols=144 Identities=31% Similarity=0.549 Sum_probs=132.5
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChh
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ 118 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~ 118 (508)
++++|+++.+. ++.+++++|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----- 62 (144)
T cd03221 1 IELENLSKTYG-------------GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----- 62 (144)
T ss_pred CEEEEEEEEEC-------------CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----
Confidence 46788888764 246999999999999999999999999999999999999999999999985
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHH
Q 010509 119 MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSI 198 (508)
Q Consensus 119 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 198 (508)
+.++|++| ||+|||||++|
T Consensus 63 --~~i~~~~~-----------------------------------------------------------lS~G~~~rv~l 81 (144)
T cd03221 63 --VKIGYFEQ-----------------------------------------------------------LSGGEKMRLAL 81 (144)
T ss_pred --EEEEEEcc-----------------------------------------------------------CCHHHHHHHHH
Confidence 46899998 89999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 199 GQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 199 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
||+|+.+|+++++||||+|||+.++..+.+.|+++ ++|++++||+++ .+...+|++++|++|+
T Consensus 82 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 82 AKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999999987 479999999986 5778899999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=338.44 Aligned_cols=207 Identities=24% Similarity=0.376 Sum_probs=166.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++||+++++ ++.+|+||||+|++||+++|+||||||||||||+|+|..+|++|+|.++|..
T Consensus 1 ~i~i~nls~~~g-------------~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~--- 64 (638)
T PRK10636 1 MIVFSSLQIRRG-------------VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW--- 64 (638)
T ss_pred CEEEEEEEEEeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC---
Confidence 378999999875 4679999999999999999999999999999999999999999999998742
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHH-----------------------HhcC-CCCCCHHHHHHHHHHHHHHcCCC
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTA-----------------------LLQL-PNSFTEKEKIKCAEAVMTELGLS 173 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~-----------------------~l~~-~~~~~~~~~~~~v~~~l~~lgL~ 173 (508)
.++|++|+.... ..|+.+.+.-.. .+.. .......+..++++++++.+|+.
T Consensus 65 ----~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~ 139 (638)
T PRK10636 65 ----QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFS 139 (638)
T ss_pred ----EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCC
Confidence 388999865333 246555432110 0000 00000112345788999999997
Q ss_pred -cccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHH
Q 010509 174 -ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLY 252 (508)
Q Consensus 174 -~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~ 252 (508)
+..++.++ .|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||+. .+.
T Consensus 140 ~~~~~~~~~-----~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~l~ 210 (638)
T PRK10636 140 NEQLERPVS-----DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-FLD 210 (638)
T ss_pred chhhcCchh-----hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHH
Confidence 56677765 89999999999999999999999999999999999999999999876 469999999986 577
Q ss_pred hhccEEEEEeCCeEE-EEcChhh
Q 010509 253 YMFHKVLLLSEGYPL-YSGEASG 274 (508)
Q Consensus 253 ~~~D~v~lL~~G~iv-~~G~~~~ 274 (508)
..||++++|++|+++ |.|+.+.
T Consensus 211 ~~~d~i~~L~~G~i~~~~g~~~~ 233 (638)
T PRK10636 211 PIVDKIIHIEQQSLFEYTGNYSS 233 (638)
T ss_pred HhcCEEEEEeCCEEEEecCCHHH
Confidence 899999999999996 6776553
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=281.13 Aligned_cols=227 Identities=20% Similarity=0.416 Sum_probs=196.1
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
-++++||++.+....+.++. ....+++.|||+++.|+.+||+|.||||||||.|+|+|.++|++|+|.+||+++.-
T Consensus 4 LLeV~nLsKtF~~~~~lf~r----~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~ 79 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRR----QTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHF 79 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhh----hhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccc
Confidence 47889999887644333322 24568999999999999999999999999999999999999999999999998742
Q ss_pred ----hccccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCccCH
Q 010509 118 ----QMTRNTGFVTQEDV--LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSG 190 (508)
...++|-+++||+. +.|.+.+.+-|.... ++..+++.+++.+++.+.|+.+||.+ .++ -+++.||-
T Consensus 80 ~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL--~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan-----~~~~~la~ 152 (267)
T COG4167 80 GDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPL--RLNTDLEPEQRRKQIFETLRMVGLLPDHAN-----YYPHMLAP 152 (267)
T ss_pred cchHhhhhheeeeecCCccccChhhhhhhHhcchh--hhcccCChHHHHHHHHHHHHHhccCccccc-----cchhhcCc
Confidence 23467999999974 788888888887664 44456788889999999999999964 344 34569999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
||||||++||||+.+|+|++.||...+||...+.++.++..+|.++ |.+-|.++.+.. .+..++|+|+||++|++++.
T Consensus 153 ~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~EG~vvE~ 231 (267)
T COG4167 153 GQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVMHEGEVVER 231 (267)
T ss_pred hhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEEecCceeec
Confidence 9999999999999999999999999999999999999999999865 999999999986 78999999999999999999
Q ss_pred cChhhHH
Q 010509 270 GEASGAM 276 (508)
Q Consensus 270 G~~~~~~ 276 (508)
|.+.++.
T Consensus 232 G~t~~v~ 238 (267)
T COG4167 232 GSTADVL 238 (267)
T ss_pred CChhhhh
Confidence 9988764
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=337.16 Aligned_cols=206 Identities=20% Similarity=0.351 Sum_probs=168.5
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|+++.++. ++.+|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.+++.
T Consensus 507 ~~L~~~~ls~~y~~------------~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~--- 571 (718)
T PLN03073 507 PIISFSDASFGYPG------------GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK--- 571 (718)
T ss_pred ceEEEEeeEEEeCC------------CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc---
Confidence 46999999998741 246999999999999999999999999999999999999999999998752
Q ss_pred hhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCccCHHHHHH
Q 010509 117 NQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 117 ~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqR 195 (508)
..+||++|+. .+.+++.++.........+ ... .++++++++.+|+.+ ..++.+ +.||||||||
T Consensus 572 ----~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~~-----~~LSgGqkqR 635 (718)
T PLN03073 572 ----VRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQPM-----YTLSGGQKSR 635 (718)
T ss_pred ----eeEEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCCc-----cccCHHHHHH
Confidence 3599999985 3456666664332211111 111 245788999999974 556555 4899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE-EEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL-YSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv-~~G~~~~ 274 (508)
|+||++|+.+|++|+|||||+|||+.++..+++.|++. .| |||++|||+. .+..+||++++|++|+++ +.|+.++
T Consensus 636 vaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l~~G~i~~~~g~~~~ 711 (718)
T PLN03073 636 VAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVVSEGKVTPFHGTFHD 711 (718)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 99999999999999999999999999999998888775 34 9999999986 577899999999999998 7887765
Q ss_pred HHH
Q 010509 275 AMN 277 (508)
Q Consensus 275 ~~~ 277 (508)
..+
T Consensus 712 ~~~ 714 (718)
T PLN03073 712 YKK 714 (718)
T ss_pred HHH
Confidence 443
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=284.98 Aligned_cols=145 Identities=27% Similarity=0.448 Sum_probs=130.6
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHH
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETM 142 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l 142 (508)
++.+++++ +++++||+++|+||||||||||+|+|+|+++|++|+|.++|++ ++|++|+..
T Consensus 12 ~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~--------i~~~~q~~~----------- 71 (177)
T cd03222 12 VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT--------PVYKPQYID----------- 71 (177)
T ss_pred CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE--------EEEEcccCC-----------
Confidence 46788885 8999999999999999999999999999999999999999864 788888532
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 010509 143 VFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTI 222 (508)
Q Consensus 143 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~ 222 (508)
||||||||++||++|+.+|++++|||||+|||+.+
T Consensus 72 ---------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~ 106 (177)
T cd03222 72 ---------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQ 106 (177)
T ss_pred ---------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCC-CEEEEEecCcchHHHhhccEEEEEeCCeEEEE--cChh
Q 010509 223 AQQILSILLKLANGG-RTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS--GEAS 273 (508)
Q Consensus 223 ~~~i~~~L~~l~~~g-~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~--G~~~ 273 (508)
+..+.+.++++++++ .|||++||++. .+.+++|++++|+++-.++. |+|.
T Consensus 107 ~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 107 RLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCCCccceeccCCc
Confidence 999999999997764 99999999986 56778999999998876655 5554
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=282.26 Aligned_cols=158 Identities=22% Similarity=0.301 Sum_probs=134.1
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHH
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETM 142 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l 142 (508)
.+++|+|+||++++||+++|+||||||||||||+|.+ ++|++.++|... ...++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~-~~~~~~~~~~~q-------------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLP-KFSRNKLIFIDQ-------------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCccc-ccccccEEEEhH--------------
Confidence 4679999999999999999999999999999999963 689999988732 222345788877
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCccCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCCC
Q 010509 143 VFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC-KNSLIGGPLTRGVSGGERKRVSIGQEILIN--PSLLFLDEPTSGLD 219 (508)
Q Consensus 143 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~--P~illLDEPtsgLD 219 (508)
.++++.++|.+. .++.+ +.||||||||++||++|+.+ |++++|||||+|||
T Consensus 68 ---------------------~~~l~~~~L~~~~~~~~~-----~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD 121 (176)
T cd03238 68 ---------------------LQFLIDVGLGYLTLGQKL-----STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLH 121 (176)
T ss_pred ---------------------HHHHHHcCCCccccCCCc-----CcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCC
Confidence 135777888653 55544 58999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 220 STIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 220 ~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
+.++..+.+.|++++++|+|||++||++.. + +.+|++++|.+|+..
T Consensus 122 ~~~~~~l~~~l~~~~~~g~tvIivSH~~~~-~-~~~d~i~~l~~g~~~ 167 (176)
T cd03238 122 QQDINQLLEVIKGLIDLGNTVILIEHNLDV-L-SSADWIIDFGPGSGK 167 (176)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEECCCCCC
Confidence 999999999999998789999999999864 4 679999999765443
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=336.73 Aligned_cols=198 Identities=21% Similarity=0.337 Sum_probs=163.1
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++.+|+|.+++
T Consensus 451 ~i~~~nv~~~~~------------~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~----- 513 (659)
T TIGR00954 451 GIKFENIPLVTP------------NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA----- 513 (659)
T ss_pred eEEEEeeEEECC------------CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----
Confidence 589999999764 134699999999999999999999999999999999999999999998864
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccC----CCCCCccCHHHH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIG----GPLTRGVSGGER 193 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg----~~~~~~LSGGer 193 (508)
++.++||+|++.+++. |++||+.++........ +...+++++++++.+|+.+..++..| ......||||||
T Consensus 514 --~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqk 588 (659)
T TIGR00954 514 --KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKR--RGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEK 588 (659)
T ss_pred --CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhhc--cCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHH
Confidence 4579999999998887 99999987532110000 00113456788999999876554321 113468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
||++|||+|+++|++++|||||+|||+.++..+.+.+++. |+|+|+++|+++. .+.+|++++|+
T Consensus 589 QRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~---~~tvI~isH~~~~--~~~~d~il~l~ 652 (659)
T TIGR00954 589 QRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF---GITLFSVSHRKSL--WKYHEYLLYMD 652 (659)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEeCchHH--HHhCCEEEEEe
Confidence 9999999999999999999999999999999999988763 8999999999863 47799999997
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=332.82 Aligned_cols=205 Identities=23% Similarity=0.360 Sum_probs=163.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++||+++++ ++.+|+|+||++++||+++|+||||||||||||+|+|+.+|++|+|.++|..
T Consensus 3 ~l~i~~ls~~~~-------------~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~--- 66 (635)
T PRK11147 3 LISIHGAWLSFS-------------DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL--- 66 (635)
T ss_pred EEEEeeEEEEeC-------------CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC---
Confidence 589999999875 3679999999999999999999999999999999999999999999998632
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHH------------------------------HHhc--CCCCCCHHHHHHHHHH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFT------------------------------ALLQ--LPNSFTEKEKIKCAEA 165 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~------------------------------~~l~--~~~~~~~~~~~~~v~~ 165 (508)
.++|++|++......++.+++..+ ..+. .. .....+..+++++
T Consensus 67 ----~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~ 141 (635)
T PRK11147 67 ----IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLD-HHNLWQLENRINE 141 (635)
T ss_pred ----EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH-hcCcccHHHHHHH
Confidence 267777765433334565543211 0000 00 0001123457889
Q ss_pred HHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEec
Q 010509 166 VMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIH 245 (508)
Q Consensus 166 ~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H 245 (508)
+++.+|+.. ++.+ ..|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++. .|||++||
T Consensus 142 ~l~~lgl~~--~~~~-----~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsH 211 (635)
T PRK11147 142 VLAQLGLDP--DAAL-----SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISH 211 (635)
T ss_pred HHHhCCCCC--CCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeC
Confidence 999999963 5555 4899999999999999999999999999999999999999999999873 59999999
Q ss_pred CcchHHHhhccEEEEEeCCeEE-EEcChhh
Q 010509 246 QPSNMLYYMFHKVLLLSEGYPL-YSGEASG 274 (508)
Q Consensus 246 ~~~~~~~~~~D~v~lL~~G~iv-~~G~~~~ 274 (508)
|+. .+...||++++|++|+++ |.|+.++
T Consensus 212 d~~-~l~~~~d~i~~L~~G~i~~~~g~~~~ 240 (635)
T PRK11147 212 DRS-FIRNMATRIVDLDRGKLVSYPGNYDQ 240 (635)
T ss_pred CHH-HHHHhcCeEEEEECCEEEEecCCHHH
Confidence 986 577899999999999997 5687653
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=359.86 Aligned_cols=206 Identities=23% Similarity=0.363 Sum_probs=171.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++.. .++++|+|+|+++++||.++|+||||||||||+++|.|.++|.+|.+.
T Consensus 614 ~I~~~~vsF~y~~~----------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~-------- 675 (1495)
T PLN03232 614 AISIKNGYFSWDSK----------TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV-------- 675 (1495)
T ss_pred cEEEEeeEEEcCCC----------CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE--------
Confidence 59999999997521 135799999999999999999999999999999999999999998763
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCCccCH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-------ECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSG 190 (508)
..++.++||+|++.+++. |++||+.|+.. .++ ++.+++++..+|. +-.+|.+|+ ....|||
T Consensus 676 ~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~~------~~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe-~G~~LSG 743 (1495)
T PLN03232 676 VIRGSVAYVPQVSWIFNA-TVRENILFGSD------FES----ERYWRAIDVTALQHDLDLLPGRDLTEIGE-RGVNISG 743 (1495)
T ss_pred EecCcEEEEcCccccccc-cHHHHhhcCCc------cCH----HHHHHHHHHhCCHHHHHhCCCCCCceecC-CCcccCH
Confidence 246789999999999975 99999998631 222 3345555555543 345788884 4568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSI-LLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~-L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
|||||++||||+..+|+|++||||||+||+.++.++++. ++.+ .+|+|+|++||+++ ....+|+|++|++|+++..
T Consensus 744 GQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~ 820 (1495)
T PLN03232 744 GQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEE 820 (1495)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999765 4443 35899999999986 3467999999999999999
Q ss_pred cChhhHH
Q 010509 270 GEASGAM 276 (508)
Q Consensus 270 G~~~~~~ 276 (508)
|+.++..
T Consensus 821 Gt~~eL~ 827 (1495)
T PLN03232 821 GTFAELS 827 (1495)
T ss_pred cCHHHHH
Confidence 9988875
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=357.78 Aligned_cols=205 Identities=23% Similarity=0.371 Sum_probs=172.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcc-cEEEECCEeCC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN-GRITYNGKPFS 116 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~-G~I~~~G~~~~ 116 (508)
.++++|++++++.. .++++|+|+|+++++||.++|+||||||||||+++|.|.++|.+ |+|.+
T Consensus 614 ~I~~~nvsf~y~~~----------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l------ 677 (1622)
T PLN03130 614 AISIKNGYFSWDSK----------AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI------ 677 (1622)
T ss_pred ceEEEeeEEEccCC----------CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE------
Confidence 59999999997521 13569999999999999999999999999999999999999999 99975
Q ss_pred hhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCccC
Q 010509 117 NQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-------CKNSLIGGPLTRGVS 189 (508)
Q Consensus 117 ~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LS 189 (508)
++.++||+|++.+++. |++||+.|+.. .+ +++.+++++..+|.+ -.+|.+|. ....||
T Consensus 678 ---~~~Iayv~Q~p~Lfng-TIreNI~fg~~------~d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe-~G~~LS 742 (1622)
T PLN03130 678 ---RGTVAYVPQVSWIFNA-TVRDNILFGSP------FD----PERYERAIDVTALQHDLDLLPGGDLTEIGE-RGVNIS 742 (1622)
T ss_pred ---cCeEEEEcCccccCCC-CHHHHHhCCCc------cc----HHHHHHHHHHhCcHHHHHhCCCcccccccC-CCCCCC
Confidence 4569999999999974 99999998632 12 234556666666543 34788874 356799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEE
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILS-ILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLY 268 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~ 268 (508)
||||||++||||+..+|+|++||||||+||+.+..++.+ .++.+. +|+|+|++||+++ ....+|+|++|++|+++.
T Consensus 743 GGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e 819 (1622)
T PLN03130 743 GGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKE 819 (1622)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEE
Confidence 999999999999999999999999999999999998875 455543 5899999999985 346799999999999999
Q ss_pred EcChhhHH
Q 010509 269 SGEASGAM 276 (508)
Q Consensus 269 ~G~~~~~~ 276 (508)
.|+.++..
T Consensus 820 ~Gt~~eL~ 827 (1622)
T PLN03130 820 EGTYEELS 827 (1622)
T ss_pred eCCHHHHH
Confidence 99988875
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=271.33 Aligned_cols=152 Identities=38% Similarity=0.745 Sum_probs=137.8
Q ss_pred EEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh---
Q 010509 41 FEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--- 117 (508)
Q Consensus 41 ~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--- 117 (508)
++|+++.++ .+.+++++|+++++||+++|+||||||||||+++|+|.+++.+|+|.++|.++..
T Consensus 2 ~~~~~~~~~-------------~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~ 68 (157)
T cd00267 2 IENLSFRYG-------------GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPL 68 (157)
T ss_pred eEEEEEEeC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCH
Confidence 567777764 3469999999999999999999999999999999999999999999999997643
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH
Q 010509 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 -~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 196 (508)
..++.++|++| |||||+||+
T Consensus 69 ~~~~~~i~~~~q-----------------------------------------------------------lS~G~~~r~ 89 (157)
T cd00267 69 EELRRRIGYVPQ-----------------------------------------------------------LSGGQRQRV 89 (157)
T ss_pred HHHHhceEEEee-----------------------------------------------------------CCHHHHHHH
Confidence 34567899988 899999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
+||++++.+|++++|||||+|||..++..+.+.++++.++++|++++||+++ .+...+|++++|++|+
T Consensus 90 ~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 90 ALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDGK 157 (157)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence 9999999999999999999999999999999999999777899999999986 5667889999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-36 Score=302.63 Aligned_cols=217 Identities=29% Similarity=0.450 Sum_probs=185.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.+.|+|+++.+. +.+++|+++||++++|+.+|++||||+||||++++|-..+.+.+|.|.++|+++..
T Consensus 262 ~v~F~~V~F~y~------------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~ 329 (497)
T COG5265 262 AVAFINVSFAYD------------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRD 329 (497)
T ss_pred eEEEEEEEeecc------------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHH
Confidence 488999999886 25789999999999999999999999999999999999999999999999999853
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH-----HHHHcCCCcccccccCCCCCCcc
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEA-----VMTELGLSECKNSLIGGPLTRGV 188 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~-----~l~~lgL~~~~~~~vg~~~~~~L 188 (508)
..|+.||.||||..||.. |...|+.++. ...+.++..+.++. .++ .+.+..|+.||.. .-.|
T Consensus 330 vtq~slR~aIg~VPQDtvLFND-ti~yni~ygr-----~~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vger-glkl 400 (497)
T COG5265 330 VTQQSLRRAIGIVPQDTVLFND-TIAYNIKYGR-----PDATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGER-GLKL 400 (497)
T ss_pred hHHHHHHHHhCcCcccceehhh-hHHHHHhccC-----ccccHHHHHHHHHHhhhhHHHH--hCchhhhcccchh-eeec
Confidence 568899999999999875 9999998863 23345554433332 222 3567788999843 3468
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEE
Q 010509 189 SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLY 268 (508)
Q Consensus 189 SGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~ 268 (508)
||||||||+|||+++.+|+||+|||.||.||..+.+++...|++++ .|+|-+++-|.++. +. -+|.+++|++|+|++
T Consensus 401 Sggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst-i~-~adeiivl~~g~i~e 477 (497)
T COG5265 401 SGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST-II-DADEIIVLDNGRIVE 477 (497)
T ss_pred cCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-cc-CCceEEEeeCCEEEe
Confidence 9999999999999999999999999999999999999999999987 57999999999985 43 479999999999999
Q ss_pred EcChhhHHHH
Q 010509 269 SGEASGAMNY 278 (508)
Q Consensus 269 ~G~~~~~~~~ 278 (508)
.|+-++++..
T Consensus 478 rg~h~~ll~~ 487 (497)
T COG5265 478 RGTHEELLAA 487 (497)
T ss_pred cCcHHHHHHc
Confidence 9998877653
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=326.70 Aligned_cols=181 Identities=28% Similarity=0.386 Sum_probs=155.7
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEE-----------ECCEeCChh------ccccEEEE
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRIT-----------YNGKPFSNQ------MTRNTGFV 126 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~-----------~~G~~~~~~------~~~~i~yv 126 (508)
..+|++++ .+++||+++|+||||||||||||+|+|+++|++|+|. ++|+++... .+..+++.
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~ 165 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHK 165 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeec
Confidence 46999999 9999999999999999999999999999999999998 999887431 12346666
Q ss_pred ecCCCCCCC---CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHh
Q 010509 127 TQEDVLSPY---LTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEIL 203 (508)
Q Consensus 127 ~Q~~~l~~~---lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~ 203 (508)
+|.....|. .||+|++... +..++++++++.+||.+..|+.++ +|||||||||+||++|+
T Consensus 166 ~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~ia~al~ 228 (590)
T PRK13409 166 PQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDIS-----ELSGGELQRVAIAAALL 228 (590)
T ss_pred ccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHh
Confidence 665444333 3999988631 123568899999999988888775 89999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 204 INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 204 ~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
.+|++|+|||||++||+.++..+.+.|+++++ |+|||+++|+++ .+..++|++++|+++
T Consensus 229 ~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 229 RDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999988 999999999986 577899999999864
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=263.86 Aligned_cols=190 Identities=27% Similarity=0.480 Sum_probs=165.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC---CcccEEEECCEe
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG---RINGRITYNGKP 114 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~---~~~G~I~~~G~~ 114 (508)
.+.++|++...+ +.-.|-|+|++|.+||++-|||||||||||||..+.|.+. ..+|++++|+++
T Consensus 2 ~l~l~nvsl~l~-------------g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~ 68 (213)
T COG4136 2 MLCLKNVSLRLP-------------GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQR 68 (213)
T ss_pred ceeeeeeeecCC-------------CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCee
Confidence 467888886543 4678999999999999999999999999999999999874 358999999999
Q ss_pred CCh--hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 115 FSN--QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 115 ~~~--~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
++. ..+|++|.++||+.+||.++|.+|+.|+. |.....+.+++.++..+++.||....++.. .+|||||
T Consensus 69 l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----~tlSGGQ 139 (213)
T COG4136 69 LDMLPAAQRQIGILFQDALLFPHLSVGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQDP-----ATLSGGQ 139 (213)
T ss_pred ccccchhhhheeeeecccccccccccccceEEec----CcccccHHHHhhHHHHHHHhccchhhhcCh-----hhcCcch
Confidence 864 45789999999999999999999999874 334444567778899999999998887654 4999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HcCCCEEEEEecCcch
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL-ANGGRTIVMTIHQPSN 249 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l-~~~g~tii~s~H~~~~ 249 (508)
|-||++-|+|+..|+.++||||+|.||..-+.++.+..-.- ...|...|.+|||..+
T Consensus 140 rARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~D 197 (213)
T COG4136 140 RARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQD 197 (213)
T ss_pred HHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccccc
Confidence 99999999999999999999999999999999999987654 4569999999999753
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=349.17 Aligned_cols=209 Identities=22% Similarity=0.426 Sum_probs=170.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+++.++. ..+++|+|+|+++++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 636 ~i~~~~~~~~~~~-----------~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----- 699 (1522)
T TIGR00957 636 SITVHNATFTWAR-----------DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG----- 699 (1522)
T ss_pred cEEEEEeEEEcCC-----------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-----
Confidence 6999999998751 125699999999999999999999999999999999999999999999987
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHH--HHHHHcCCC-cccccccCCCCCCccCHHHHH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAE--AVMTELGLS-ECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~--~~l~~lgL~-~~~~~~vg~~~~~~LSGGerq 194 (508)
.++||+|++.+++ .|++||+.|+.. .++++.++.++ ++.+.++.. +..+|.+| +...+|||||||
T Consensus 700 ----~i~yv~Q~~~l~~-~Ti~eNI~~g~~------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig-~~g~~LSGGQkq 767 (1522)
T TIGR00957 700 ----SVAYVPQQAWIQN-DSLRENILFGKA------LNEKYYQQVLEACALLPDLEILPSGDRTEIG-EKGVNLSGGQKQ 767 (1522)
T ss_pred ----EEEEEcCCccccC-CcHHHHhhcCCc------cCHHHHHHHHHHhCCHHHHHhcCCCCCceec-CCCCCCCHHHHH
Confidence 4899999998875 699999998632 12222221111 122333332 23456676 346789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--cCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLA--NGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~--~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
|++||||++.+|++++||||||+||+.++.++.+.+.+.. .+|+|+|++||+++. + ..+|++++|++|+++..|+.
T Consensus 768 RiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~-l-~~~D~ii~l~~G~i~~~g~~ 845 (1522)
T TIGR00957 768 RVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY-L-PQVDVIIVMSGGKISEMGSY 845 (1522)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh-h-hhCCEEEEecCCeEEeeCCH
Confidence 9999999999999999999999999999999999997542 357999999999863 4 45999999999999999998
Q ss_pred hhHH
Q 010509 273 SGAM 276 (508)
Q Consensus 273 ~~~~ 276 (508)
++..
T Consensus 846 ~~l~ 849 (1522)
T TIGR00957 846 QELL 849 (1522)
T ss_pred HHHH
Confidence 8875
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=267.11 Aligned_cols=215 Identities=26% Similarity=0.428 Sum_probs=171.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEe---
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP--- 114 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~--- 114 (508)
.++++++++.|. ...-.+||||++.|||+++|+|+|||||||||++|++++.|+.|+|.|.-.+
T Consensus 6 LL~V~~lsk~Yg-------------~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~ 72 (258)
T COG4107 6 LLSVSGLSKLYG-------------PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQP 72 (258)
T ss_pred ceeehhhhhhhC-------------CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCc
Confidence 588999998865 3446789999999999999999999999999999999999999999997532
Q ss_pred CC-----h-h----ccccEEEEecCCC--CCCCC----CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 010509 115 FS-----N-Q----MTRNTGFVTQEDV--LSPYL----TVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNS 178 (508)
Q Consensus 115 ~~-----~-~----~~~~i~yv~Q~~~--l~~~l----Tv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 178 (508)
.. + + .|..-|+|.|++. +-... .+.|-+.-.. .|. -...++.+.++|+++.++..+
T Consensus 73 ~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G-~RH-----YG~iR~~a~~WL~~VEI~~~R-- 144 (258)
T COG4107 73 RDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIG-ARH-----YGNIRAEAQDWLEEVEIDLDR-- 144 (258)
T ss_pred hhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhh-hhh-----hhhHHHHHHHHHHhcccCccc--
Confidence 21 1 1 2346799999864 32222 2334332111 111 123455677899998886432
Q ss_pred ccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccE
Q 010509 179 LIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHK 257 (508)
Q Consensus 179 ~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~ 257 (508)
+ +..|+..|||+|||+.|||.|++.|+++|+||||-|||...+..++++++.|..+ |.+++++|||.. .+.-++||
T Consensus 145 -i-DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~-VarLla~r 221 (258)
T COG4107 145 -I-DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLADR 221 (258)
T ss_pred -c-cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhH-HHHHhhhc
Confidence 2 2457899999999999999999999999999999999999999999999999865 999999999986 56678999
Q ss_pred EEEEeCCeEEEEcChhhHH
Q 010509 258 VLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 258 v~lL~~G~iv~~G~~~~~~ 276 (508)
.++|++|+++..|-++.++
T Consensus 222 lmvmk~g~vve~GLTDrvL 240 (258)
T COG4107 222 LMVMKQGQVVESGLTDRVL 240 (258)
T ss_pred ceeecCCCEeccccccccc
Confidence 9999999999999887654
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=340.93 Aligned_cols=193 Identities=27% Similarity=0.449 Sum_probs=157.9
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHH
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
+++|+|+|+++++||+++|+|||||||||||++|+|..+|++|+|.++| .++||+|++.+++. ||+||+.
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g---------~iayv~Q~~~l~~~-Ti~eNI~ 508 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG---------RISFSPQTSWIMPG-TIKDNII 508 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC---------EEEEEeCCCccCCc-cHHHHHH
Confidence 5699999999999999999999999999999999999999999999987 38999999999885 9999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHH--HHHHHcCC-CcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 010509 144 FTALLQLPNSFTEKEKIKCAE--AVMTELGL-SECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDS 220 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~--~~l~~lgL-~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~ 220 (508)
|+... +.+..++..+ .+.+.+.. .+..+|.+|. ....||||||||++||||++.+|++++||||||+||+
T Consensus 509 ~g~~~------~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~-~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~ 581 (1490)
T TIGR01271 509 FGLSY------DEYRYTSVIKACQLEEDIALFPEKDKTVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDV 581 (1490)
T ss_pred hcccc------chHHHHHHHHHHhHHHHHHhccccccccccC-cCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 86421 1111111111 11222221 2223456663 4678999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHH
Q 010509 221 TIAQQILSI-LLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 221 ~~~~~i~~~-L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~ 276 (508)
.++.++.+. ++++. +|+|+|++||+++. + ..+|++++|++|+++..|+.++..
T Consensus 582 ~~~~~i~~~~l~~~~-~~~tvilvtH~~~~-~-~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 582 VTEKEIFESCLCKLM-SNKTRILVTSKLEH-L-KKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred HHHHHHHHHHHHHHh-cCCeEEEEeCChHH-H-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999985 66665 48999999999874 4 459999999999999999988775
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=264.42 Aligned_cols=188 Identities=25% Similarity=0.411 Sum_probs=165.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++.+||+.+.+ +..++.++||++.+||++-|.||||||||||||+|+|+..|.+|+|.++|.++..
T Consensus 2 ~L~a~~L~~~R~-------------e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~ 68 (209)
T COG4133 2 MLEAENLSCERG-------------ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQN 68 (209)
T ss_pred cchhhhhhhccC-------------cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCcc
Confidence 355677776543 5789999999999999999999999999999999999999999999999998864
Q ss_pred ---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHH
Q 010509 118 ---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 118 ---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 194 (508)
..++.+-|+--.+.+=+.|||.|||.|-....-. . ..+.+.++++.+||....|..++ .||-||||
T Consensus 69 ~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~--~----~~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqR 137 (209)
T COG4133 69 VRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGS--G----NAATIWEALAQVGLAGLEDLPVG-----QLSAGQQR 137 (209)
T ss_pred chhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCC--C----chhhHHHHHHHcCcccccccchh-----hcchhHHH
Confidence 2446777888888888999999999998765321 1 12457889999999999999886 89999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcch
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSN 249 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~ 249 (508)
||+|||-.++.+++=|||||+++||......+-..+..-+.+|-.||.+||||..
T Consensus 138 RvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 138 RVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 9999999999999999999999999999999999999888889999999999874
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=306.07 Aligned_cols=206 Identities=28% Similarity=0.444 Sum_probs=172.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++|++++++ .+++++|+|+++.+|+.+||+|+||||||||||+|+|...|++|+|...+.
T Consensus 3 ~i~~~~ls~~~g-------------~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~---- 65 (530)
T COG0488 3 MITLENLSLAYG-------------DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG---- 65 (530)
T ss_pred eEEEeeeEEeeC-------------CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC----
Confidence 688999999875 588999999999999999999999999999999999999999999987532
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhc-------------CCCC--------------CCHHHHHHHHHHHHHHc
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQ-------------LPNS--------------FTEKEKIKCAEAVMTEL 170 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~-------------~~~~--------------~~~~~~~~~v~~~l~~l 170 (508)
-.++|++|++.+.+..||.+.+.-+..-. ++.. ...-+.+.+++.++..+
T Consensus 66 ---~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL 142 (530)
T COG0488 66 ---LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL 142 (530)
T ss_pred ---ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC
Confidence 25999999999999999999876543210 0000 00001235678889999
Q ss_pred CCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchH
Q 010509 171 GLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNM 250 (508)
Q Consensus 171 gL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~ 250 (508)
|+.+. ++.++ +||||||.||+||++|+.+|++|+|||||++||..+..-+-+.|++. +| |+|++||| +..
T Consensus 143 g~~~~-~~~~~-----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~F 212 (530)
T COG0488 143 GFPDE-DRPVS-----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYF 212 (530)
T ss_pred CCCcc-cCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHH
Confidence 99887 77776 89999999999999999999999999999999999999999999865 46 99999999 568
Q ss_pred HHhhccEEEEEeCCeEE-EEcChh
Q 010509 251 LYYMFHKVLLLSEGYPL-YSGEAS 273 (508)
Q Consensus 251 ~~~~~D~v~lL~~G~iv-~~G~~~ 273 (508)
+-..|++|+-++.|++. |.|.-+
T Consensus 213 Ld~V~t~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 213 LDNVATHILELDRGKLTPYKGNYS 236 (530)
T ss_pred HHHHhhheEEecCCceeEecCCHH
Confidence 89999999999999875 667654
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=318.87 Aligned_cols=216 Identities=21% Similarity=0.267 Sum_probs=158.1
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC---CCcccEEEECC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL---GRINGRITYNG 112 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~---~~~~G~I~~~G 112 (508)
+-.|+++|++++|+ ++.+|+|+||+|++||.+||+||||||||||||+|+|+. .|.+|+|.+.+
T Consensus 175 ~~~I~i~nls~~y~-------------~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~ 241 (718)
T PLN03073 175 IKDIHMENFSISVG-------------GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVE 241 (718)
T ss_pred ceeEEEceEEEEeC-------------CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEe
Confidence 44699999999975 356999999999999999999999999999999999964 46778887654
Q ss_pred EeC-----Ch-------------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC---------------CCCHHHH
Q 010509 113 KPF-----SN-------------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPN---------------SFTEKEK 159 (508)
Q Consensus 113 ~~~-----~~-------------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~---------------~~~~~~~ 159 (508)
+.+ +. ..++.++|++|++.+... ++.++.........+. .......
T Consensus 242 Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 320 (718)
T PLN03073 242 QEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTA 320 (718)
T ss_pred ccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchH
Confidence 432 10 012235666665432211 1111110000000000 0000123
Q ss_pred HHHHHHHHHHcCCC-cccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCC
Q 010509 160 IKCAEAVMTELGLS-ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGR 238 (508)
Q Consensus 160 ~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~ 238 (508)
.++++++++.+|+. +..++.++ +|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.
T Consensus 321 ~~r~~~~L~~lgl~~~~~~~~~~-----~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~ 392 (718)
T PLN03073 321 EARAASILAGLSFTPEMQVKATK-----TFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PK 392 (718)
T ss_pred HHHHHHHHHHCCCChHHHhCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CC
Confidence 45667788888885 44555554 89999999999999999999999999999999999999999999987 68
Q ss_pred EEEEEecCcchHHHhhccEEEEEeCCeEE-EEcChhh
Q 010509 239 TIVMTIHQPSNMLYYMFHKVLLLSEGYPL-YSGEASG 274 (508)
Q Consensus 239 tii~s~H~~~~~~~~~~D~v~lL~~G~iv-~~G~~~~ 274 (508)
|||++|||.. .+...||++++|++|++. |.|+.++
T Consensus 393 tviivsHd~~-~l~~~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 393 TFIVVSHARE-FLNTVVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred EEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 9999999975 577889999999999996 7777653
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=335.64 Aligned_cols=191 Identities=28% Similarity=0.423 Sum_probs=154.4
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHH
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETM 142 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l 142 (508)
++.+|+|+|+++++||+++|+|||||||||||++|+|.++|++|+|.++ +.++|++|++.+++ .|++||+
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~---------~~i~yv~Q~~~l~~-~Tv~enI 741 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE---------RSIAYVPQQAWIMN-ATVRGNI 741 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC---------CeEEEEeCCCccCC-CcHHHHH
Confidence 4679999999999999999999999999999999999999999999863 46999999998875 6999999
Q ss_pred HHHHHhcCCCCCCHHHHH-----HHHHHHHHHc--CCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 010509 143 VFTALLQLPNSFTEKEKI-----KCAEAVMTEL--GLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPT 215 (508)
Q Consensus 143 ~~~~~l~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPt 215 (508)
.|+.. ...+... ...++.++.+ |+ ++.+| +....||||||||++|||||+.+|++++|||||
T Consensus 742 ~~~~~------~~~~~~~~~~~~~~l~~~l~~l~~g~----~t~i~-~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~ 810 (1560)
T PTZ00243 742 LFFDE------EDAARLADAVRVSQLEADLAQLGGGL----ETEIG-EKGVNLSGGQKARVSLARAVYANRDVYLLDDPL 810 (1560)
T ss_pred HcCCh------hhHHHHHHHHHHhhhHHHHHHhhccc----hHHhc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 98521 1111111 1123334444 33 33444 335689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHH
Q 010509 216 SGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 216 sgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~ 276 (508)
++||+.++..+++.+.....+|+|+|++||+++. + ..+|++++|++|++++.|+.++..
T Consensus 811 saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~-~-~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 811 SALDAHVGERVVEECFLGALAGKTRVLATHQVHV-V-PRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred ccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999987543222358999999999863 4 579999999999999999988764
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=268.00 Aligned_cols=190 Identities=20% Similarity=0.299 Sum_probs=136.7
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHH-HHHhcCCCCcccEEEECC------------EeCCh--hcc-ccEEEE
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLL-TALGGRLGRINGRITYNG------------KPFSN--QMT-RNTGFV 126 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL-~~L~g~~~~~~G~I~~~G------------~~~~~--~~~-~~i~yv 126 (508)
+..+|+||||++++||+++|+||||||||||+ ..+.. +|++.+.+ ....+ ..+ ...++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-----EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-----HHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 46799999999999999999999999999995 44431 23321110 00000 111 233444
Q ss_pred ecCCC--CCCCCCHHH---HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCccCHHHHHHHHHHH
Q 010509 127 TQEDV--LSPYLTVTE---TMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTRGVSGGERKRVSIGQ 200 (508)
Q Consensus 127 ~Q~~~--l~~~lTv~E---~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~Ia~ 200 (508)
.|++. +.|..+|.. ...+...+. ..+...++ .+.++.+||.+ ..++.+ ++||||||||++||+
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~lar 150 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRSA-----PTLSGGEAQRIRLAT 150 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCcc-----CcCCHHHHHHHHHHH
Confidence 44432 344456542 222221111 11122233 46899999976 356554 589999999999999
Q ss_pred HHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE------eCCeEEEEc
Q 010509 201 EILINP--SLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL------SEGYPLYSG 270 (508)
Q Consensus 201 aL~~~P--~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL------~~G~iv~~G 270 (508)
+|+.+| ++++|||||+|||+.++..+.+.|++++++|.|+|++||+++ .+ ..||++++| ++|+++++|
T Consensus 151 al~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 151 QIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 999998 599999999999999999999999999878999999999986 45 589999999 999999876
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=252.58 Aligned_cols=213 Identities=23% Similarity=0.335 Sum_probs=177.9
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEe--
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP-- 114 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~-- 114 (508)
..|.++|+++++...... .-..++++|+||+++.||++++=||||||||||||+|-|.+.|++|+|++.-..
T Consensus 3 ~~l~v~~~~KtFtlH~q~------Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~ 76 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQG------GVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEW 76 (235)
T ss_pred ceeeeecchhheEeeecC------CEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcch
Confidence 358889999887643211 113579999999999999999999999999999999999999999999986432
Q ss_pred CC-----h----h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCC
Q 010509 115 FS-----N----Q-MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPL 184 (508)
Q Consensus 115 ~~-----~----~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 184 (508)
++ + + .++.+|||.|.-...|.....|.+.-....+ +.+.+..++++.+++..+++.+..-.+.
T Consensus 77 vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~---gv~~~~a~~~a~~Ll~rLnlperLW~La---- 149 (235)
T COG4778 77 VDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLTRLNLPERLWSLA---- 149 (235)
T ss_pred hhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCCHHHhcCC----
Confidence 11 1 2 2457999999988888888777776655433 5677888889999999999987654432
Q ss_pred CCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
|...||||||||.|||.++.+-+||+|||||+.||..++..+++++++-+..|..+|=+-||- +.-...+||++-+..
T Consensus 150 PaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDe-evre~vadR~~~~~~ 227 (235)
T COG4778 150 PATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDE-EVREAVADRLLDVSA 227 (235)
T ss_pred CcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccH-HHHHHHhhheeeccc
Confidence 568999999999999999999999999999999999999999999999888899999999994 466789999988764
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-33 Score=247.74 Aligned_cols=133 Identities=44% Similarity=0.714 Sum_probs=120.9
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh----hccccEEEEecCCCCCCCCCHHHHH
Q 010509 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----QMTRNTGFVTQEDVLSPYLTVTETM 142 (508)
Q Consensus 67 L~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lTv~E~l 142 (508)
|+|+|+++++||+++|+|+||||||||+++|+|..++.+|+|.++|+++.. ..++.++|++|++.+++.+||+|+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 789999999999999999999999999999999999999999999999864 457789999999999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 010509 143 VFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTS 216 (508)
Q Consensus 143 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPts 216 (508)
...++++++++.+++.+..++.++. ....||||||||++||++|+.+|++++|||||+
T Consensus 80 ---------------~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ---------------ESDERIEEVLKKLGLEDLLDRKIGQ-RASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ---------------HHHHHHHHHHHHTTHGGGTGSBGTS-CGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ---------------ccccccccccccccccccccccccc-ccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 2234578899999999988888853 347999999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-32 Score=312.66 Aligned_cols=215 Identities=22% Similarity=0.322 Sum_probs=182.4
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
-.++++|++.+|.. +...+|||||++|+|||-+||+|+.|||||||.++|-.+..|.+|+|.+||.++.
T Consensus 1137 G~I~f~~~~~RYrp-----------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~ 1205 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRP-----------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDIS 1205 (1381)
T ss_pred CeEEEEEeEEEeCC-----------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecc
Confidence 37999999999862 2357999999999999999999999999999999999999999999999999997
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCC
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-------CKNSLIGGPLT 185 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~ 185 (508)
+ +.|++++.+||||.+|.. |+|.||.=.. ..++++ +-++||..+|++ ..|+.+. +..
T Consensus 1206 ~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~------e~sD~~----IW~ALe~~~Lk~~v~~~p~~Ld~~v~-egG 1273 (1381)
T KOG0054|consen 1206 KIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFD------EYSDDE----IWEALERCQLKDVVSSLPGGLDSEVS-EGG 1273 (1381)
T ss_pred cccHHHHHhcCeeeCCCCceecC-ccccccCccc------ccCHHH----HHHHHHHhChHHHHhhCCcCCCceec-CCC
Confidence 5 689999999999999986 9999986221 223443 334555555433 3455553 345
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
.++|-||||.+++||||+++++||+|||+|++.|+.+-..|.+.+|+-- +++|||.+-|+.+. +.+ +|||+||++|+
T Consensus 1274 ~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T-Vmd-~DrVlVld~G~ 1350 (1381)
T KOG0054|consen 1274 ENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT-VMD-SDRVLVLDAGR 1350 (1381)
T ss_pred ccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch-hhh-cCeEEEeeCCe
Confidence 6899999999999999999999999999999999999999999999854 47999999999986 445 69999999999
Q ss_pred EEEEcChhhHHH
Q 010509 266 PLYSGEASGAMN 277 (508)
Q Consensus 266 iv~~G~~~~~~~ 277 (508)
++++|+|.++.+
T Consensus 1351 v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1351 VVEFDSPAELLS 1362 (1381)
T ss_pred EeecCChHHHHh
Confidence 999999998864
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=309.92 Aligned_cols=208 Identities=23% Similarity=0.434 Sum_probs=176.2
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|.+++-+.. ...+.|+|||++|++|+++||+||-|||||+||.+|.|..+..+|+|.++|.
T Consensus 517 ~~i~i~~~sfsW~~~----------~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs--- 583 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDSE----------SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS--- 583 (1381)
T ss_pred ceEEEeeeeEecCCC----------CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe---
Confidence 468889999885421 1344899999999999999999999999999999999999999999999876
Q ss_pred hhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCCCCCccC
Q 010509 117 NQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC-------KNSLIGGPLTRGVS 189 (508)
Q Consensus 117 ~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LS 189 (508)
++||+|++.+++. ||+||+.|+... + +++.+++++...|++. -.|.|| +..-+||
T Consensus 584 ------iaYv~Q~pWI~ng-TvreNILFG~~~------d----~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIG-ErGinLS 645 (1381)
T KOG0054|consen 584 ------VAYVPQQPWIQNG-TVRENILFGSPY------D----EERYDKVIKACALKKDLEILPFGDLTEIG-ERGINLS 645 (1381)
T ss_pred ------EEEeccccHhhCC-cHHHhhhcCccc------c----HHHHHHHHHHccCHhHHhhcCCCCcceec-CCccCCc
Confidence 8999999999875 999999997532 2 3455666776666533 356677 4455899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
||||||+++|||+-++++|++||.|.|++|++...++.+..-+..-+++|+|++|||.. ....+|+|++|++|+|+..
T Consensus 646 GGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~--~L~~ad~Iivl~~G~I~~~ 723 (1381)
T KOG0054|consen 646 GGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQ--FLPHADQIIVLKDGKIVES 723 (1381)
T ss_pred HhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchh--hhhhCCEEEEecCCeEecc
Confidence 99999999999999999999999999999999999998777654446899999999974 5577999999999999999
Q ss_pred cChhhHHH
Q 010509 270 GEASGAMN 277 (508)
Q Consensus 270 G~~~~~~~ 277 (508)
|+.+|..+
T Consensus 724 Gty~el~~ 731 (1381)
T KOG0054|consen 724 GTYEELLK 731 (1381)
T ss_pred cCHHHHHh
Confidence 99999873
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=264.09 Aligned_cols=193 Identities=25% Similarity=0.349 Sum_probs=153.6
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh-----cCC-----CC-----------cccEEEECCEeCChhc---
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG-----GRL-----GR-----------INGRITYNGKPFSNQM--- 119 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~-----g~~-----~~-----------~~G~I~~~G~~~~~~~--- 119 (508)
..-|+|||.+|+.|++++|.|+||||||||++.+. ... .| .+--|.+++.++....
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45699999999999999999999999999998552 110 01 1124677776663211
Q ss_pred -----------cc----------------cEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC
Q 010509 120 -----------TR----------------NTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGL 172 (508)
Q Consensus 120 -----------~~----------------~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL 172 (508)
|+ .+.|..++...+..+||.|++.|...++ ..+++.++++.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 11 2456666666677899999999876431 12456789999999
Q ss_pred Cc-ccccccCCCCCCccCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcc
Q 010509 173 SE-CKNSLIGGPLTRGVSGGERKRVSIGQEILIN---PSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPS 248 (508)
Q Consensus 173 ~~-~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~---P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~ 248 (508)
.+ ..++.+ +.||||||||+.||++|+.+ |++++|||||+|||+.....+.+.|++++++|.|||+++|++.
T Consensus 159 ~~l~l~~~~-----~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~ 233 (261)
T cd03271 159 GYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233 (261)
T ss_pred chhhhcCcc-----ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 87 355544 48999999999999999996 7999999999999999999999999999888999999999986
Q ss_pred hHHHhhccEEEEE------eCCeEEEEcCh
Q 010509 249 NMLYYMFHKVLLL------SEGYPLYSGEA 272 (508)
Q Consensus 249 ~~~~~~~D~v~lL------~~G~iv~~G~~ 272 (508)
.+ +.+|+++.| ++|++++.|++
T Consensus 234 -~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 -VI-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred -HH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 34 579999999 89999999974
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=272.29 Aligned_cols=214 Identities=23% Similarity=0.407 Sum_probs=181.8
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
++.++++|++.. ..++|+||++++||+++|-|-=|||+|-|+++|.|..++.+|+|.++|+++
T Consensus 261 ~~~l~v~~l~~~-----------------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v 323 (500)
T COG1129 261 EPVLEVRNLSGG-----------------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPV 323 (500)
T ss_pred CcEEEEecCCCC-----------------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEc
Confidence 345777777542 247899999999999999999999999999999998888999999999987
Q ss_pred Ch-----hccccEEEEecCC---CCCCCCCHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHcCCCc-ccccccCCCC
Q 010509 116 SN-----QMTRNTGFVTQED---VLSPYLTVTETMVFTALLQLPN--SFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPL 184 (508)
Q Consensus 116 ~~-----~~~~~i~yv~Q~~---~l~~~lTv~E~l~~~~~l~~~~--~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~ 184 (508)
.. ..+..++|||.|. .++..++|.+|+.++...+... -.++...++.+++..+.+++.. ..+..++
T Consensus 324 ~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~--- 400 (500)
T COG1129 324 RIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIG--- 400 (500)
T ss_pred cCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhh---
Confidence 42 3566899999874 5889999999998873322211 2455666678899999999963 3445554
Q ss_pred CCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
.||||.||||.||+.|..+|++|||||||.|.|.-++.+|.+++++++++|++||++|.++. ++..+||||++|++|
T Consensus 401 --~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~G 477 (500)
T COG1129 401 --TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMREG 477 (500)
T ss_pred --cCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEECC
Confidence 89999999999999999999999999999999999999999999999999999999999986 588999999999999
Q ss_pred eEEEEcCh
Q 010509 265 YPLYSGEA 272 (508)
Q Consensus 265 ~iv~~G~~ 272 (508)
+++..=+.
T Consensus 478 ri~~e~~~ 485 (500)
T COG1129 478 RIVGELDR 485 (500)
T ss_pred EEEEEecc
Confidence 99865443
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-32 Score=246.96 Aligned_cols=196 Identities=29% Similarity=0.487 Sum_probs=171.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh----hccccEEEEecCCCCCCCCCHHHH
Q 010509 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----QMTRNTGFVTQEDVLSPYLTVTET 141 (508)
Q Consensus 66 iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lTv~E~ 141 (508)
-|-.+|+++..||++-++|||||||||||-.++|++ |-+|+|.++|+++.. +..|+-+|..|+..-...|.|..+
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~Y 92 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHY 92 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhh
Confidence 377899999999999999999999999999999997 569999999999853 567788999998776667889998
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhh-----CC--CEEEEeCC
Q 010509 142 MVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILI-----NP--SLLFLDEP 214 (508)
Q Consensus 142 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~-----~P--~illLDEP 214 (508)
+... .+.+++...++++.+.++|.+...+.+ .+|||||-|||-+|...+. || ++|+||||
T Consensus 93 L~L~--------qP~~~~a~~i~~i~~~L~l~DKL~Rs~-----~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP 159 (248)
T COG4138 93 LTLH--------QPDKTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEP 159 (248)
T ss_pred hhhc--------CchHHHHHHHHHHHhhhcccchhhhhh-----hhcCcccceeeEEeEEEEEecCCCCccceeEEecCC
Confidence 8653 233566677888999999998887666 4899999999999977654 55 79999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHH
Q 010509 215 TSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 215 tsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~ 276 (508)
.++||...+..+-..|.++++.|.+||++.||.+- ..+.+|++.+|+.|++...|..+++.
T Consensus 160 ~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNh-TLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 160 MNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNH-TLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred CcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhh-HHHHHHHHHHHhcCeEEeecchhhhc
Confidence 99999999999999999999999999999999984 66889999999999999999998874
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=277.73 Aligned_cols=203 Identities=27% Similarity=0.451 Sum_probs=168.6
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
...++++|+++.++. .+.+++++||.+++|+.+||+||||+|||||||+|+|...|.+|+|.+.-.
T Consensus 319 ~~vl~~~~~~~~y~~------------~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-- 384 (530)
T COG0488 319 KLVLEFENVSKGYDG------------GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-- 384 (530)
T ss_pred CeeEEEeccccccCC------------CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc--
Confidence 456899999998751 368999999999999999999999999999999999999999999987522
Q ss_pred ChhccccEEEEecCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCccCHHHH
Q 010509 116 SNQMTRNTGFVTQED-VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC-KNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 116 ~~~~~~~i~yv~Q~~-~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGer 193 (508)
-.+||..|+. .+.+..|+.|++.-.. + ... ...+...|..+++... ..+.++ .||||||
T Consensus 385 -----v~igyf~Q~~~~l~~~~t~~d~l~~~~----~-~~~----e~~~r~~L~~f~F~~~~~~~~v~-----~LSGGEk 445 (530)
T COG0488 385 -----VKIGYFDQHRDELDPDKTVLEELSEGF----P-DGD----EQEVRAYLGRFGFTGEDQEKPVG-----VLSGGEK 445 (530)
T ss_pred -----eEEEEEEehhhhcCccCcHHHHHHhhC----c-ccc----HHHHHHHHHHcCCChHHHhCchh-----hcCHhHH
Confidence 2599999986 4457889999886432 1 111 4567889999999743 455554 8999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE-EEcCh
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL-YSGEA 272 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv-~~G~~ 272 (508)
.|+.+|+.++.+|.+|+|||||+.||..+...+.+.|.+. .-|||++|||. ..+...+++++.+.+ ++. +.|..
T Consensus 446 ~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr-~Fl~~va~~i~~~~~-~~~~~~g~y 520 (530)
T COG0488 446 ARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDR-YFLDRVATRIWLVED-KVEEFEGGY 520 (530)
T ss_pred HHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHhhcceEEEEcC-ceeEcCCCH
Confidence 9999999999999999999999999999999999999887 35999999996 479999999999998 554 44765
Q ss_pred hhHH
Q 010509 273 SGAM 276 (508)
Q Consensus 273 ~~~~ 276 (508)
++-.
T Consensus 521 ~~y~ 524 (530)
T COG0488 521 EDYL 524 (530)
T ss_pred HHHH
Confidence 5443
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-31 Score=250.85 Aligned_cols=163 Identities=15% Similarity=0.245 Sum_probs=131.5
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCc---------ccEEEECCEeCCh-hccccEEEEecCCCCCCCCC
Q 010509 68 KGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI---------NGRITYNGKPFSN-QMTRNTGFVTQEDVLSPYLT 137 (508)
Q Consensus 68 ~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~---------~G~I~~~G~~~~~-~~~~~i~yv~Q~~~l~~~lT 137 (508)
+++++++++| +++|+||||||||||+++|+|+.++. .|++.++|++... ..++.++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6889999999 99999999999999999999986443 4578888877533 3356799999998766
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHh----hCCCEEEEeC
Q 010509 138 VTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEIL----INPSLLFLDE 213 (508)
Q Consensus 138 v~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~----~~P~illLDE 213 (508)
|.. . ..++++++++. .+..++.+ +.||||||||++||++|+ .+|++++|||
T Consensus 89 ------~~~------~-----~~~~~~~~l~~---~~~~~~~~-----~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YSI------I-----SQGDVSEIIEA---PGKKVQRL-----SLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------eeE------E-----ehhhHHHHHhC---CCccccch-----hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 110 0 02356667766 44445544 589999999999999997 4669999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 214 PTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 214 PtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
||+|||+..+..+.+.|+++++ +.|||++||++. .+ +.+|+++.+..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~-~~-~~~d~v~~~~~ 190 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKG-TM-EAADRLYGVTM 190 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH-HH-hhcceEEEEEe
Confidence 9999999999999999999975 689999999986 34 67999999974
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.9e-30 Score=250.48 Aligned_cols=186 Identities=16% Similarity=0.286 Sum_probs=135.8
Q ss_pred cccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC----------------CCCccc--------EEEECCEe--
Q 010509 61 IEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGR----------------LGRING--------RITYNGKP-- 114 (508)
Q Consensus 61 ~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~----------------~~~~~G--------~I~~~G~~-- 114 (508)
++++.++++++ |++++|+||||||||||+++|++. +.+.+| +|.+++.+
T Consensus 12 y~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~ 86 (243)
T cd03272 12 YKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNR 86 (243)
T ss_pred cccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCc
Confidence 44577888887 789999999999999999999833 334455 66666532
Q ss_pred --CC-h--hccccEEEEecCCCCCC-CCCHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHHHcCCCcccccccCCCCCCc
Q 010509 115 --FS-N--QMTRNTGFVTQEDVLSP-YLTVTETMVFTALLQLPNSFTEK-EKIKCAEAVMTELGLSECKNSLIGGPLTRG 187 (508)
Q Consensus 115 --~~-~--~~~~~i~yv~Q~~~l~~-~lTv~E~l~~~~~l~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 187 (508)
.. . ..++.++|++|+..+++ ..|..|...+.....+....... .... ++.+.+++.+..+..+ +.
T Consensus 87 ~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg---~i~~l~~l~~~~~~~~-----~~ 158 (243)
T cd03272 87 FPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQG---KINSLTNMKQDEQQEM-----QQ 158 (243)
T ss_pred cCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcC---chHHhhhccccccccc-----cc
Confidence 11 1 34667999999887777 46777766665544322110000 0011 2333455554444444 58
Q ss_pred cCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 188 VSGGERKRVSIGQEILI----NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~----~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
||||||||++||++|+. +|+++++||||+|||+.++..+++.|+++++ ++|||+++|++ ++.+++|++++|.
T Consensus 159 lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 159 LSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred cCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 99999999999999974 5899999999999999999999999999876 78999999985 3668999999986
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-30 Score=251.10 Aligned_cols=180 Identities=13% Similarity=0.153 Sum_probs=138.0
Q ss_pred cccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHH
Q 010509 61 IEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTE 140 (508)
Q Consensus 61 ~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E 140 (508)
++++++++++++ ++++|+||||||||||+++|. .++|.+.....++++++++|+..++|.+|+.|
T Consensus 14 ~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 78 (212)
T cd03274 14 YAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRASKMRQKKLSDLIHNSAGHPNLDSCS 78 (212)
T ss_pred CCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHHHhhhhhHHHHhcCCCCCCCCceEE
Confidence 346789999987 899999999999999999997 22344332222356899999999999999999
Q ss_pred HHHHHHHhcCC-----CCCCHHHHHH--HHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhh----CCCEE
Q 010509 141 TMVFTALLQLP-----NSFTEKEKIK--CAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILI----NPSLL 209 (508)
Q Consensus 141 ~l~~~~~l~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~----~P~il 209 (508)
.+.+....... .+...+.... ..+++++.++|.+..++.++ .+|+|||||++||++++. +|+++
T Consensus 79 ~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~-----~lS~G~~~r~~la~al~~~~~~~p~il 153 (212)
T cd03274 79 VEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS-----NLSGGEKTLSSLALVFALHHYKPTPLY 153 (212)
T ss_pred EEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchh-----hcCHHHHHHHHHHHHHHhcccCCCCEE
Confidence 87665432100 0111111111 12566778888877777664 899999999999999974 47999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 210 FLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 210 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
++||||+|||+.++..+.+.|+++++ +.|+|++||++ .+.+.||++++|+.
T Consensus 154 ilDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 154 VMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 99999999999999999999999864 57888888995 46789999999974
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.4e-29 Score=245.20 Aligned_cols=179 Identities=17% Similarity=0.209 Sum_probs=137.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCCCCc-ccEEEECCE-eC-Ch-----hccccEEEEecCC---------CCCCCC
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRI-NGRITYNGK-PF-SN-----QMTRNTGFVTQED---------VLSPYL 136 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~-~G~I~~~G~-~~-~~-----~~~~~i~yv~Q~~---------~l~~~l 136 (508)
+.+| +++|+||||||||||+++|++.+.+. .|++...|. ++ .. ..+..+++++|++ .+.|.+
T Consensus 23 ~~~~-~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~l 101 (251)
T cd03273 23 FDPQ-FNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEI 101 (251)
T ss_pred CCCC-eEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceE
Confidence 3355 99999999999999999999998765 568888776 32 11 1234799999985 346688
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC--------------------cccccccCCCCCCccCHHHHHHH
Q 010509 137 TVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS--------------------ECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 137 Tv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--------------------~~~~~~vg~~~~~~LSGGerqRv 196 (508)
||.+++......+.... .++...+++.++++.+|+. +..++ .+++||||||||+
T Consensus 102 tV~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~-----~~~~lS~G~~qr~ 175 (251)
T cd03273 102 TVTRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKE-----SLTELSGGQRSLV 175 (251)
T ss_pred EEEEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcc-----cccccCHHHHHHH
Confidence 99988865432111000 1223346788899999986 22233 3468999999999
Q ss_pred HHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 197 SIGQEIL----INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 197 ~Ia~aL~----~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
+||++|+ .+|+++++||||+|||+.++..+.+.|++++ +|.|+|++||++ ++.+.+|+++-+.
T Consensus 176 ~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 176 ALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 9999998 5789999999999999999999999999985 489999999994 4667899998876
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-27 Score=244.31 Aligned_cols=221 Identities=23% Similarity=0.374 Sum_probs=189.1
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
.+.|+++||+..-. .+.+.+++|||++++||+++|.|=.|-|-+.|+.+|+|+.++.+|+|.++|+++
T Consensus 255 ~~vL~V~~L~v~~~------------~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v 322 (501)
T COG3845 255 EVVLEVEDLSVKDR------------RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDV 322 (501)
T ss_pred CeEEEEeeeEeecC------------CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEec
Confidence 46799999987633 124689999999999999999999999999999999999988889999999996
Q ss_pred ----Ch--hccccEEEEecCC---CCCCCCCHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHHHcCCCcc-cccccC
Q 010509 116 ----SN--QMTRNTGFVTQED---VLSPYLTVTETMVFTALLQLP----NSFTEKEKIKCAEAVMTELGLSEC-KNSLIG 181 (508)
Q Consensus 116 ----~~--~~~~~i~yv~Q~~---~l~~~lTv~E~l~~~~~l~~~----~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg 181 (508)
+. ..+..++|||+|. .+.+.+|+.||+.+...-+.| .-....+.++.++++++++++... .+..
T Consensus 323 ~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~-- 400 (501)
T COG3845 323 LGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAP-- 400 (501)
T ss_pred cccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcc--
Confidence 22 2345799999986 478899999999876542211 124567778889999999999733 2222
Q ss_pred CCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 182 ~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
.+.||||++||+-+||+|..+|++|++.+||.|||..+...|.+.|.+++++|+.|++++-|++ +++.++|||.+|
T Consensus 401 ---a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi 476 (501)
T COG3845 401 ---ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVI 476 (501)
T ss_pred ---hhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeee
Confidence 4589999999999999999999999999999999999999999999999999999999999986 689999999999
Q ss_pred eCCeEEEEcChhh
Q 010509 262 SEGYPLYSGEASG 274 (508)
Q Consensus 262 ~~G~iv~~G~~~~ 274 (508)
++|+++...++++
T Consensus 477 ~~Gri~~~~~~~~ 489 (501)
T COG3845 477 YEGRIVGIVPPEE 489 (501)
T ss_pred eCCceeccccccc
Confidence 9999998888765
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-27 Score=228.33 Aligned_cols=178 Identities=17% Similarity=0.193 Sum_probs=127.5
Q ss_pred eceEEEEe-CCeEEEEECCCCCcHHHHHHHHhcCC-CCcccEEEECCE--eCC-hhccccEEEEecCCCCCCCCCHHHHH
Q 010509 68 KGITGMVK-PGEMLAMLGPSGCGKTTLLTALGGRL-GRINGRITYNGK--PFS-NQMTRNTGFVTQEDVLSPYLTVTETM 142 (508)
Q Consensus 68 ~~vs~~v~-~Ge~~ailG~nGsGKSTLL~~L~g~~-~~~~G~I~~~G~--~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l 142 (508)
++++|... +|++++|+|||||||||||++|++.+ .+..+....+.. .+. ...+..+++++|++.... ++....
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~~ 95 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERSR 95 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEec
Confidence 55666543 58999999999999999999999643 444444443311 111 123456999999864311 121111
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhh----------CCCEEEEe
Q 010509 143 VFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILI----------NPSLLFLD 212 (508)
Q Consensus 143 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~----------~P~illLD 212 (508)
..+.++..+.+ .++..++.+..++.+ ..||||||||++||++|+. +|++++||
T Consensus 96 ----------gl~~~~~~~~~--~l~~g~l~~~l~~~~-----~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllD 158 (213)
T cd03279 96 ----------GLDYDQFTRIV--LLPQGEFDRFLARPV-----STLSGGETFLASLSLALALSEVLQNRGGARLEALFID 158 (213)
T ss_pred ----------CCCHHHHHHhh--hhhhcchHHHhcCCc-----cccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEe
Confidence 22333222211 234444555555444 4899999999999999985 57899999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 213 EPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 213 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
|||+|||+.++..+.+.|++++++|.|+|++||+++ .+...+|++++|++|.
T Consensus 159 Ep~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 159 EGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 999999999999999999999877999999999986 5778899999999874
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-27 Score=229.28 Aligned_cols=166 Identities=19% Similarity=0.276 Sum_probs=126.8
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHh----cCCCCcccEEEECCEeCCh-hccccEEEEecCC-----CCCCCCCH
Q 010509 69 GITGMVKPGEMLAMLGPSGCGKTTLLTALG----GRLGRINGRITYNGKPFSN-QMTRNTGFVTQED-----VLSPYLTV 138 (508)
Q Consensus 69 ~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~----g~~~~~~G~I~~~G~~~~~-~~~~~i~yv~Q~~-----~l~~~lTv 138 (508)
..++++.+| +++|+|||||||||||++|. |...+.+|.+..+.+.+.. ..+..+++++|++ .....+|+
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 344567788 99999999999999999995 8877777766522222221 3455799999987 34445688
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH------HHHHHHHhhCCCEEEEe
Q 010509 139 TETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR------VSIGQEILINPSLLFLD 212 (508)
Q Consensus 139 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR------v~Ia~aL~~~P~illLD 212 (508)
.|++.+. .+. .+++.+ ++ .++.||+||||| ++||++++.+|+++++|
T Consensus 94 ~~~~~~~---------~~~----~~~~~~---------~~-----~~~~LS~G~~~~~~la~rlala~al~~~p~illlD 146 (204)
T cd03240 94 LENVIFC---------HQG----ESNWPL---------LD-----MRGRCSGGEKVLASLIIRLALAETFGSNCGILALD 146 (204)
T ss_pred hhceeee---------chH----HHHHHH---------hc-----CccccCccHHHHHHHHHHHHHHHHhccCCCEEEEc
Confidence 8887542 111 122232 32 345899999996 78999999999999999
Q ss_pred CCCCCCCHHHHH-HHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEe-CC
Q 010509 213 EPTSGLDSTIAQ-QILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLS-EG 264 (508)
Q Consensus 213 EPtsgLD~~~~~-~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~-~G 264 (508)
|||++||+.++. .+.+.|++++++ |.|||++||++. ....+|+++.|. +|
T Consensus 147 EP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~~~ 199 (204)
T cd03240 147 EPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEKDG 199 (204)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEeeCC
Confidence 999999999999 999999999876 899999999975 336799999996 44
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=273.78 Aligned_cols=138 Identities=25% Similarity=0.342 Sum_probs=113.6
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCccCHHHHHHHHHHHHHh---hCCC
Q 010509 132 LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC-KNSLIGGPLTRGVSGGERKRVSIGQEIL---INPS 207 (508)
Q Consensus 132 l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~Ia~aL~---~~P~ 207 (508)
.+...||.|+|.+...-......+.++..+++ ++++.+||.+. .++.+ .+||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45678999999887542211111234455566 48899999875 56655 489999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe------CCeEEEEcChhhHHH
Q 010509 208 LLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS------EGYPLYSGEASGAMN 277 (508)
Q Consensus 208 illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~------~G~iv~~G~~~~~~~ 277 (508)
+++|||||+|||+.+..++++.|++++++|.|||+++|++. .+ +.+|++++|. +|+++..|+++++..
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 99999999999999999999999999988999999999986 45 7899999996 789999999987653
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.7e-28 Score=242.02 Aligned_cols=204 Identities=23% Similarity=0.288 Sum_probs=166.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+.|.+... .-=+..||+++++||++-|+|.||||||||++.|.|+..|++|+|.+||++++.
T Consensus 322 ~lelrnvrfay~~~------------~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~ 389 (546)
T COG4615 322 TLELRNVRFAYQDN------------AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSA 389 (546)
T ss_pred ceeeeeeeeccCcc------------cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCC
Confidence 58999999987622 134789999999999999999999999999999999999999999999999964
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
++|+..+-|+-|-.+|+.+--.|+ ..+ .+.++..++.+.|.+...-.-|+-.+-.||.|||
T Consensus 390 e~ledYR~LfSavFsDyhLF~~ll~~e~-----------~as----~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQk 454 (546)
T COG4615 390 EQLEDYRKLFSAVFSDYHLFDQLLGPEG-----------KAS----PQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQK 454 (546)
T ss_pred CCHHHHHHHHHHHhhhHhhhHhhhCCcc-----------CCC----hHHHHHHHHHHHHhhhhcccCCcccccccccchH
Confidence 567777778888777775321111 012 2346777888877765433333333568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLK-LANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~-l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||+++-.|++-+.+|+++||=-+.-||.-++.+.+.+.- +++.|+||+.+|||- .-|.++||++.|.+|+++..-
T Consensus 455 KRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 455 KRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCceeecc
Confidence 999999999999999999999999999999999887765 566799999999994 478899999999999999764
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-26 Score=246.23 Aligned_cols=197 Identities=28% Similarity=0.419 Sum_probs=160.9
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
...++++|++...+. ++..|++.++.+++||-+.|.||||||||||+|+|+|+-+--+|+|.+-
T Consensus 390 ~~~i~~~nl~l~~p~------------~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P---- 453 (604)
T COG4178 390 DHGITLENLSLRTPD------------GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP---- 453 (604)
T ss_pred cceeEEeeeeEECCC------------CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC----
Confidence 357999999987652 3589999999999999999999999999999999999998778888653
Q ss_pred ChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccC-CCCCCccCHHHHH
Q 010509 116 SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIG-GPLTRGVSGGERK 194 (508)
Q Consensus 116 ~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg-~~~~~~LSGGerq 194 (508)
....+-|+||.|.+... |.+|.+.+.... ...+ .+.+.++|.++||.+..++.-+ ++.-+.||+||||
T Consensus 454 ---~~~~~lflpQ~PY~p~G-tLre~l~YP~~~---~~~~----d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQ 522 (604)
T COG4178 454 ---ADSALLFLPQRPYLPQG-TLREALCYPNAA---PDFS----DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQ 522 (604)
T ss_pred ---CCCceEEecCCCCCCCc-cHHHHHhCCCCC---CCCC----hHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHH
Confidence 12347899999998776 999998875321 1123 3457789999999988766433 1345689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
|+++||.|+++|++++|||.||+||+.+...+.+.|++-. .+.|||-+.|++. +..+.++.+-+.
T Consensus 523 RlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 523 RLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred HHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeec
Confidence 9999999999999999999999999999999999998743 3799999999975 556667655554
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.6e-26 Score=257.77 Aligned_cols=125 Identities=26% Similarity=0.400 Sum_probs=107.0
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCccCHHHHHHHHHHHHHhhCC---CEEEE
Q 010509 136 LTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTRGVSGGERKRVSIGQEILINP---SLLFL 211 (508)
Q Consensus 136 lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P---~illL 211 (508)
+||.|++.|...+. + ..+..+.++.+||.+ ..++.+ ..||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~~~-----~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQPA-----TTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccCCc-----ccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999998875431 1 123467899999986 355555 489999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE------eCCeEEEEcChhhHH
Q 010509 212 DEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL------SEGYPLYSGEASGAM 276 (508)
Q Consensus 212 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL------~~G~iv~~G~~~~~~ 276 (508)
||||+|||+..+..+++.|+++.++|.|||+++|++. .+ ..+|+++.| ++|++++.|+++++.
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~-~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD-VI-KTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 9999999999999999999999888999999999986 34 579999999 799999999998764
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-26 Score=216.29 Aligned_cols=228 Identities=20% Similarity=0.303 Sum_probs=179.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC----CcccEEEECCE
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG----RINGRITYNGK 113 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~----~~~G~I~~~G~ 113 (508)
.+.++||+..+.... +..+++++||+++..||+-+++|.||||||-..|+|+|..+ .+.-...+++.
T Consensus 3 LLDIrnL~IE~~Tsq---------G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~i 73 (330)
T COG4170 3 LLDIRNLTIEFKTSQ---------GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDI 73 (330)
T ss_pred cccccceEEEEecCC---------CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccc
Confidence 367889999887443 34679999999999999999999999999999999999763 23445566666
Q ss_pred eCC---h-h----ccccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCC--CC-HHHHHHHHHHHHHHcCCCccccccc
Q 010509 114 PFS---N-Q----MTRNTGFVTQEDV--LSPYLTVTETMVFTALLQLPNS--FT-EKEKIKCAEAVMTELGLSECKNSLI 180 (508)
Q Consensus 114 ~~~---~-~----~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~l~~~~~--~~-~~~~~~~v~~~l~~lgL~~~~~~~v 180 (508)
++- + + ..+.+++++|++. +-|.-+|...+.-....+..++ .. -.-+++++-++|..+|+.+..|-.
T Consensus 74 dLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM- 152 (330)
T COG4170 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIM- 152 (330)
T ss_pred hhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHH-
Confidence 542 2 2 2346889999985 5555455444432211111010 00 012456778899999999877643
Q ss_pred CCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEE
Q 010509 181 GGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVL 259 (508)
Q Consensus 181 g~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~ 259 (508)
..++.+|--||-|+|.||.|++.+|++|+.||||+.+|+.++.++.++|.++.+ +|+||++++||.. .+.+.||++-
T Consensus 153 -~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~ 230 (330)
T COG4170 153 -RSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKIN 230 (330)
T ss_pred -HhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheE
Confidence 467889999999999999999999999999999999999999999999999976 5999999999987 5889999999
Q ss_pred EEeCCeEEEEcChhhHHH
Q 010509 260 LLSEGYPLYSGEASGAMN 277 (508)
Q Consensus 260 lL~~G~iv~~G~~~~~~~ 277 (508)
||.-|+-++.++.+++++
T Consensus 231 VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 231 VLYCGQTVESAPSEELVT 248 (330)
T ss_pred EEEecccccccchhHHhc
Confidence 999999999999988764
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=247.72 Aligned_cols=125 Identities=26% Similarity=0.396 Sum_probs=104.2
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCccCHHHHHHHHHHHHHhh---CCCEEE
Q 010509 135 YLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC-KNSLIGGPLTRGVSGGERKRVSIGQEILI---NPSLLF 210 (508)
Q Consensus 135 ~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~Ia~aL~~---~P~ill 210 (508)
.+||.|.+.|...+. . ..+..++++.+||... .++.+ ++||||||||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~~~-----~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 367778877765431 1 1134578899999753 45544 4899999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE------eCCeEEEEcChhhH
Q 010509 211 LDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL------SEGYPLYSGEASGA 275 (508)
Q Consensus 211 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL------~~G~iv~~G~~~~~ 275 (508)
|||||+|||+..+..+++.|+++.++|.|||+++|++. .+ ..+|+++.| ++|++++.|+++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999999999999999999888999999999986 45 579999999 79999999998764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.3e-26 Score=235.96 Aligned_cols=204 Identities=20% Similarity=0.317 Sum_probs=160.6
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
+..+.+.|+++.|+. +-.++++++|-+++++.+|++||||+|||||||++.|.+.|+.|.|.-.-+
T Consensus 387 ~pvi~~~nv~F~y~~------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-- 452 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSD------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-- 452 (614)
T ss_pred CCeEEEeccccCCCC------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc--
Confidence 445888888887652 226899999999999999999999999999999999999999999864322
Q ss_pred ChhccccEEEEecC--CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-ccccCCCCCCccCHHH
Q 010509 116 SNQMTRNTGFVTQE--DVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK-NSLIGGPLTRGVSGGE 192 (508)
Q Consensus 116 ~~~~~~~i~yv~Q~--~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~LSGGe 192 (508)
..+++-.|+ +.+.-..++-|++.-.. +++...+.++.++..+||+... +..+ ++||+||
T Consensus 453 -----~~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~p~-----~~LS~Gq 514 (614)
T KOG0927|consen 453 -----NKLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVVPM-----SQLSDGQ 514 (614)
T ss_pred -----ccchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCccccccch-----hhccccc
Confidence 234444554 23434567777764321 1123446678899999998544 4444 5999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE-EEEcC
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP-LYSGE 271 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i-v~~G~ 271 (508)
|+||..|+.++..|.+|+|||||+|||..+...+-+.|.+. .-++|+++||.. .+.+.++++.+..+|.+ .+.|+
T Consensus 515 r~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~G~ 590 (614)
T KOG0927|consen 515 RRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWDGD 590 (614)
T ss_pred chhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecCcc
Confidence 99999999999999999999999999999999999998876 358999999986 68899999999988765 46776
Q ss_pred hhhH
Q 010509 272 ASGA 275 (508)
Q Consensus 272 ~~~~ 275 (508)
...-
T Consensus 591 i~~y 594 (614)
T KOG0927|consen 591 IEIY 594 (614)
T ss_pred HHHH
Confidence 5533
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-24 Score=208.80 Aligned_cols=169 Identities=20% Similarity=0.209 Sum_probs=123.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-----hccccEEEEecCCCCCCCCCHHHH
Q 010509 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN-----QMTRNTGFVTQEDVLSPYLTVTET 141 (508)
Q Consensus 67 L~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~-----~~~~~i~yv~Q~~~l~~~lTv~E~ 141 (508)
++++++++.+| +.+|+|||||||||||.+|......... ....|..... .....+.+.+|+..+.++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~------ 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN------ 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccCC------
Confidence 46788888888 8899999999999999999854322111 0111221111 113457888887665541
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHH----hhCCCEEEEeCCCCC
Q 010509 142 MVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEI----LINPSLLFLDEPTSG 217 (508)
Q Consensus 142 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL----~~~P~illLDEPtsg 217 (508)
... ...+++++++++. .+..++.+ ++||+|||||++||+++ +.+|++++|||||+|
T Consensus 84 -----------~~~-~~~~~~~~~~l~~---~~~~~~~~-----~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~g 143 (198)
T cd03276 84 -----------PLC-VLSQDMARSFLTS---NKAAVRDV-----KTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVF 143 (198)
T ss_pred -----------cCC-HHHHHHHHHHhcc---ccccCCcc-----cccChhHHHHHHHHHHHHHhcccCCCEEEecCcccc
Confidence 011 1123567777776 55555555 48999999999999999 589999999999999
Q ss_pred CCHHHHHHHHHHHHHHHcC---CCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 218 LDSTIAQQILSILLKLANG---GRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 218 LD~~~~~~i~~~L~~l~~~---g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
||+.++..+.+.|++++++ +.|||+++|++.. +.+ +|+|.+|..++
T Consensus 144 lD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~-i~~-~d~v~~~~~~~ 192 (198)
T cd03276 144 MDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG-LAS-SDDVKVFRMKD 192 (198)
T ss_pred cCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc-ccc-ccceeEEEecC
Confidence 9999999999999998643 4689999999874 555 49999998764
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7e-25 Score=229.07 Aligned_cols=211 Identities=23% Similarity=0.358 Sum_probs=146.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEE--EECCEeC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRI--TYNGKPF 115 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I--~~~G~~~ 115 (508)
.++++|+++++. ++.+++|+++++.+|+-++|+|+|||||||+|++|+|+..|..-++ +.-.++.
T Consensus 75 dvk~~sls~s~~-------------g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~ 141 (614)
T KOG0927|consen 75 DVKIESLSLSFH-------------GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREI 141 (614)
T ss_pred cceeeeeeeccC-------------CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccC
Confidence 578888888764 5789999999999999999999999999999999999986543333 2222222
Q ss_pred ChhccccEEEEecCCCCCCCCCHHHHHHHHH------------------HhcCCCCCCHHHHHHHHHHHHHHcCC-Cccc
Q 010509 116 SNQMTRNTGFVTQEDVLSPYLTVTETMVFTA------------------LLQLPNSFTEKEKIKCAEAVMTELGL-SECK 176 (508)
Q Consensus 116 ~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~------------------~l~~~~~~~~~~~~~~v~~~l~~lgL-~~~~ 176 (508)
.+...+.+-++.+. .-..+.-+...+ ..|+ ..++.+....++-++|..+|. .+..
T Consensus 142 ~ps~~~av~~v~~~-----~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~-~~~d~~~~~~k~~~il~glgf~~~m~ 215 (614)
T KOG0927|consen 142 EPSEKQAVQAVVME-----TDHERKRLEYLAEDLAQACDDKEKDELDELYERL-DEMDNDTFEAKAAKILHGLGFLSEMQ 215 (614)
T ss_pred CCchHHHHHHHhhh-----hHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHH-HhhCchhHHHHHHHHHHhcCCCHhHH
Confidence 11111111111100 000000000000 0000 112233344556667777765 4556
Q ss_pred ccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhcc
Q 010509 177 NSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFH 256 (508)
Q Consensus 177 ~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D 256 (508)
++.+ .++|||+|+|+++||+|..+|++|+|||||+|||..+..-+-+.|.+..+ .++++++|.- +.+-..|.
T Consensus 216 ~k~~-----~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~Q-Dfln~vCT 287 (614)
T KOG0927|consen 216 DKKV-----KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHSQ-DFLNGVCT 287 (614)
T ss_pred HHHh-----hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecch-hhhhhHhh
Confidence 6665 48999999999999999999999999999999999999999998887632 2899999985 57889999
Q ss_pred EEEEEeCCe-EEEEcChhhH
Q 010509 257 KVLLLSEGY-PLYSGEASGA 275 (508)
Q Consensus 257 ~v~lL~~G~-iv~~G~~~~~ 275 (508)
+|+-|++++ +.|.|+-+.-
T Consensus 288 ~Ii~l~~kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 288 NIIHLDNKKLIYYEGNYDQY 307 (614)
T ss_pred hhheecccceeeecCCHHHH
Confidence 999999999 6677876643
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-24 Score=221.32 Aligned_cols=174 Identities=22% Similarity=0.333 Sum_probs=143.5
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHH
Q 010509 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFT 145 (508)
Q Consensus 66 iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~ 145 (508)
-|+-=.+++..||+++++||||-||||+.++|+|.++|++|+ .. .-.++|=||--.--...||++.+.-.
T Consensus 356 ~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~------~~~vSyKPQyI~~~~~gtV~~~l~~~ 425 (591)
T COG1245 356 KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EE------DLKVSYKPQYISPDYDGTVEDLLRSA 425 (591)
T ss_pred EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cc------cceEeecceeecCCCCCcHHHHHHHh
Confidence 355556777888999999999999999999999999999998 11 22488889965444567999988754
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 010509 146 ALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQ 225 (508)
Q Consensus 146 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~ 225 (508)
..-+...+ -...++++-|+|++..++.+. +|||||.|||+||.+|..++++.+||||++-||+..+..
T Consensus 426 ~~~~~~~s-------~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~ 493 (591)
T COG1245 426 IRSAFGSS-------YFKTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRII 493 (591)
T ss_pred hhhhcccc-------hhHHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHH
Confidence 43221111 123578888999999988875 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 226 ILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 226 i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
+.+.+++..+ +++|.+++-||.. .+-.+.||+++..
T Consensus 494 vakvIRR~~e~~~kta~vVdHDi~-~~dyvsDr~ivF~ 530 (591)
T COG1245 494 VAKVIRRFIENNEKTALVVDHDIY-MIDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHhhcCceEEEEeccee-hhhhhhceEEEEe
Confidence 9999999986 4899999999986 5777889988764
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-24 Score=214.18 Aligned_cols=179 Identities=14% Similarity=0.202 Sum_probs=120.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEe-C-Ch---------hccccEEEEecCCCC-CCCCCHHHHH
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP-F-SN---------QMTRNTGFVTQEDVL-SPYLTVTETM 142 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~-~-~~---------~~~~~i~yv~Q~~~l-~~~lTv~E~l 142 (508)
.++ +++|+|||||||||||++|++.+.+..|++..++.+ . .. ...-.+.|..|++.. .-..++.+..
T Consensus 21 ~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~ 99 (247)
T cd03275 21 FDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGS 99 (247)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCc
Confidence 344 999999999999999999999887666777554321 0 00 111123444443221 0011111110
Q ss_pred HHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccc---------cCC--------CCCCccCHHHHHHHHHHHHHhh
Q 010509 143 VFTALLQLP-NSFTEKEKIKCAEAVMTELGLSECKNSL---------IGG--------PLTRGVSGGERKRVSIGQEILI 204 (508)
Q Consensus 143 ~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~---------vg~--------~~~~~LSGGerqRv~Ia~aL~~ 204 (508)
. ..+.. ...+ .+.++++++.+|+....... +.+ ..+..||||||||++||++++.
T Consensus 100 ~---~~~ingk~~s----~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~ 172 (247)
T cd03275 100 S---SYRINGKVVS----LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAI 172 (247)
T ss_pred e---EEEECCEEec----HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHH
Confidence 0 00111 1112 23456888889986332111 111 1236899999999999999987
Q ss_pred C----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 205 N----PSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 205 ~----P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
+ |+++++||||+|||+..+..+.+.|++++++|.+||++||+++ +...+|++++|..
T Consensus 173 ~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~--~~~~~d~i~~~~~ 233 (247)
T cd03275 173 HSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEE--FFSKADALVGVYR 233 (247)
T ss_pred hccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHH--HHhhCCeEEEEEe
Confidence 5 8999999999999999999999999999877999999999964 5578999999973
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-22 Score=213.82 Aligned_cols=205 Identities=20% Similarity=0.315 Sum_probs=160.6
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
...+++++++...++. +..+++|+|++|++|+-+.|.||||||||+|||+|+|+-+..+|.+.--.+.-
T Consensus 431 Dn~i~~e~v~l~tPt~-----------g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~ 499 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTN-----------GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG 499 (659)
T ss_pred cceEEeeeeeecCCCC-----------CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC
Confidence 3579999999886521 35688999999999999999999999999999999999988999997644321
Q ss_pred ChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCC------CCCCccC
Q 010509 116 SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGG------PLTRGVS 189 (508)
Q Consensus 116 ~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~------~~~~~LS 189 (508)
-+.+-|+||.|...-. |.||.+.+....-.+. ++.-..+++.+.|+.++|.|..++.=|- ..-..||
T Consensus 500 ----~~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~~--~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS 572 (659)
T KOG0060|consen 500 ----PKDLFFLPQRPYMTLG-TLRDQVIYPLKAEDMD--SKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLS 572 (659)
T ss_pred ----CCceEEecCCCCcccc-chhheeeccCcccccc--ccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcC
Confidence 1458899999876554 8899888763211111 1112235677788888888776543221 1234699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
+||+||++.||-+.++|++-+|||-||++|......+.+.++++ |.|.|-+.|..+ +.++-|.++-|+.
T Consensus 573 ~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~---giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 573 PGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM---GITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc---CCeEEEeccHHH--HHhhhhEEEEecC
Confidence 99999999999999999999999999999999999999888775 899999999986 5565688877774
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-22 Score=187.87 Aligned_cols=211 Identities=22% Similarity=0.269 Sum_probs=162.0
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++++.|.|+. ..+++-|+|++++.|.-..++|.||||||||||+|+|..-.-.|.|.++|++.-
T Consensus 12 ~aievsgl~f~y~~------------~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaF 79 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKV------------SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAF 79 (291)
T ss_pred ceEEEeccEEeccc------------CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcc
Confidence 36999999999873 347999999999999999999999999999999999976444599999998752
Q ss_pred h---------------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccC
Q 010509 117 N---------------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIG 181 (508)
Q Consensus 117 ~---------------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 181 (508)
. ++.+.++.-- +-.+...+++.+.+ |+.. .... +|-+++++.+++.-..
T Consensus 80 hDt~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~mi-fgV~-----g~dp----~Rre~LI~iLDIdl~W----- 143 (291)
T KOG2355|consen 80 HDTSLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEHMI-FGVG-----GDDP----ERREKLIDILDIDLRW----- 143 (291)
T ss_pred ccccccccCceeEecccccccccccc-cccccccccHHHHH-hhcc-----CCCh----hHhhhhhhheeccceE-----
Confidence 1 1223333222 22334456665544 4321 1112 2345667777665221
Q ss_pred CCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEE
Q 010509 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLL 260 (508)
Q Consensus 182 ~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~l 260 (508)
..+.+|-||||||.|++.|++.=++|+|||-|-.||..++..+++.|++-.+ +|.||+..||--.. +.....+++.
T Consensus 144 --RmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDG-Le~Wpthl~y 220 (291)
T KOG2355|consen 144 --RMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDG-LETWPTHLVY 220 (291)
T ss_pred --EEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccc-hhhcchhEEE
Confidence 1247999999999999999999999999999999999999999999999876 59999999998764 6688899999
Q ss_pred EeCCeEEEEcChhhHHHH
Q 010509 261 LSEGYPLYSGEASGAMNY 278 (508)
Q Consensus 261 L~~G~iv~~G~~~~~~~~ 278 (508)
|++|+++-.-+.+++.++
T Consensus 221 i~~Gkl~~~l~~~~i~e~ 238 (291)
T KOG2355|consen 221 IKSGKLVDNLKYQKIKEF 238 (291)
T ss_pred ecCCeeeeccccchhhhh
Confidence 999999986666555544
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-23 Score=215.46 Aligned_cols=203 Identities=21% Similarity=0.299 Sum_probs=142.8
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
-.|...+.+..|+ .+.+|++-++++..|.-++|+|+||+|||||||+|+. |+|.. -++.
T Consensus 79 ~Di~~~~fdLa~G-------------~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~--f~ve 137 (582)
T KOG0062|consen 79 KDIHIDNFDLAYG-------------GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSG--FHVE 137 (582)
T ss_pred cceeeeeeeeeec-------------chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCc--cCch
Confidence 4566666666654 5789999999999999999999999999999999997 33322 2222
Q ss_pred hhccccEEEEecC-CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 117 NQMTRNTGFVTQE-DVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 117 ~~~~~~i~yv~Q~-~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
++.+ -.+++-. +.+... |.++.+...- -.+.... +..+...++|..+|.++..... ..++||||-|-|
T Consensus 138 qE~~--g~~t~~~~~~l~~D-~~~~dfl~~e-~~l~~~~---~l~ei~~~~L~glGFt~emq~~----pt~slSGGWrMr 206 (582)
T KOG0062|consen 138 QEVR--GDDTEALQSVLESD-TERLDFLAEE-KELLAGL---TLEEIYDKILAGLGFTPEMQLQ----PTKSLSGGWRMR 206 (582)
T ss_pred hhee--ccchHHHhhhhhcc-HHHHHHHHhh-hhhhccc---hHHHHHHHHHHhCCCCHHHHhc----cccccCcchhhH
Confidence 2222 1222221 122222 3333332211 0011111 2334455589999998654332 235999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE-EEEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP-LYSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i-v~~G~~~~ 274 (508)
+++||||..+|++|||||||+.||..+..-+-+.|+.+ +.|+|+++|| +..+-..|..|+-+++-++ .|.|+-++
T Consensus 207 laLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~~ 282 (582)
T KOG0062|consen 207 LALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYSQ 282 (582)
T ss_pred HHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHHH
Confidence 99999999999999999999999999999999999887 3799999999 5578788888888777665 36776554
Q ss_pred H
Q 010509 275 A 275 (508)
Q Consensus 275 ~ 275 (508)
.
T Consensus 283 F 283 (582)
T KOG0062|consen 283 F 283 (582)
T ss_pred H
Confidence 3
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-22 Score=192.25 Aligned_cols=146 Identities=21% Similarity=0.178 Sum_probs=110.1
Q ss_pred eeceEEEEeCCe-EEEEECCCCCcHHHHHHHHh--------cCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCC
Q 010509 67 LKGITGMVKPGE-MLAMLGPSGCGKTTLLTALG--------GRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLT 137 (508)
Q Consensus 67 L~~vs~~v~~Ge-~~ailG~nGsGKSTLL~~L~--------g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lT 137 (508)
..++|+++++|+ +++|.||||||||||||+|+ |..-|... ...++|..|...
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~-------------~~~~~~~~~~~~------ 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAE-------------GSSLPVFENIFA------ 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccc-------------cccCcCccEEEE------
Confidence 458999999994 89999999999999999998 33222110 012334333211
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 010509 138 VTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSG 217 (508)
Q Consensus 138 v~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsg 217 (508)
.++..+..+..+ ..+|+||||++.|+++ +.+|+++++|||++|
T Consensus 78 -------------------------------~lg~~~~l~~~~-----s~fs~g~~~~~~i~~~-~~~p~llllDEp~~g 120 (200)
T cd03280 78 -------------------------------DIGDEQSIEQSL-----STFSSHMKNIARILQH-ADPDSLVLLDELGSG 120 (200)
T ss_pred -------------------------------ecCchhhhhcCc-----chHHHHHHHHHHHHHh-CCCCcEEEEcCCCCC
Confidence 111111111112 3799999999999977 589999999999999
Q ss_pred CCHHHHHHHH-HHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 218 LDSTIAQQIL-SILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 218 LD~~~~~~i~-~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||+..+..+. ..++++.+.|.++|++||+. .+..++|++..|++|++.+.+
T Consensus 121 lD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 121 TDPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 9999999996 46888877799999999984 467899999999999999874
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-21 Score=189.27 Aligned_cols=80 Identities=21% Similarity=0.265 Sum_probs=68.3
Q ss_pred CCccCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-C-CEEEEEecCcchHHHhhcc--
Q 010509 185 TRGVSGGERKRVSIGQEI----LINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-G-RTIVMTIHQPSNMLYYMFH-- 256 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL----~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g-~tii~s~H~~~~~~~~~~D-- 256 (508)
+.+||||||||+.++.+| +.+|+++++||||+|||+.++..+++.|++++++ | .|+|++||++.. ..+.+|
T Consensus 124 ~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~~ 202 (213)
T cd03277 124 PHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEKM 202 (213)
T ss_pred hhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCce
Confidence 458999999999877554 5799999999999999999999999999999766 5 589999999764 445565
Q ss_pred EEEEEeCCe
Q 010509 257 KVLLLSEGY 265 (508)
Q Consensus 257 ~v~lL~~G~ 265 (508)
++++|++|+
T Consensus 203 ~v~~l~~g~ 211 (213)
T cd03277 203 TVLCVYNGP 211 (213)
T ss_pred EEEEEecCc
Confidence 788888886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-21 Score=199.87 Aligned_cols=191 Identities=24% Similarity=0.375 Sum_probs=149.1
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
|..|-++|++|.|+ +.++++++++|-|.-..-+||+||||.||||||++|.|.+.|..|+..-|
T Consensus 584 PPvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn---- 647 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN---- 647 (807)
T ss_pred CCeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc----
Confidence 45688888888765 25789999999999999999999999999999999999999999987644
Q ss_pred ChhccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 116 SNQMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 116 ~~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
.+-+||+..|+. .|-..-|..|.|.-.. .+ +.+ .++..|-.+||...++|.- ++.||||||
T Consensus 648 ---hrL~iG~FdQh~~E~L~~Eetp~EyLqr~F--Nl----pyq----~ARK~LG~fGL~sHAHTik----ikdLSGGQK 710 (807)
T KOG0066|consen 648 ---HRLRIGWFDQHANEALNGEETPVEYLQRKF--NL----PYQ----EARKQLGTFGLASHAHTIK----IKDLSGGQK 710 (807)
T ss_pred ---ceeeeechhhhhHHhhccccCHHHHHHHhc--CC----ChH----HHHHHhhhhhhhhccceEe----eeecCCcch
Confidence 234689888864 3555557777665322 12 222 3456788999998888753 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
-||++|.--+..|+||||||||++||..+...+.+.+++. .-.||+++||-+. +.+.-=.+.|+.+
T Consensus 711 aRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 711 ARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVEN 776 (807)
T ss_pred HHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEcc
Confidence 9999998889999999999999999999999999988876 3579999999653 3232224555543
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-22 Score=203.93 Aligned_cols=172 Identities=28% Similarity=0.432 Sum_probs=130.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEE-----------ECCEeCChhcc------ccEEEEecCCCCCC--
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRIT-----------YNGKPFSNQMT------RNTGFVTQEDVLSP-- 134 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~-----------~~G~~~~~~~~------~~i~yv~Q~~~l~~-- 134 (508)
.++|++++|+||||-||||-+|+|+|.+.|.=|+-. +.|..+..-++ -++..=+|--.+.|
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 579999999999999999999999999877655431 11111110000 01222233211112
Q ss_pred -CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeC
Q 010509 135 -YLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDE 213 (508)
Q Consensus 135 -~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDE 213 (508)
.-||.|-|.-. +.+-..+++++.++|++..|+.+. +|||||-||++||.+++++.+++++||
T Consensus 177 ~KG~v~elLk~~------------de~g~~devve~l~L~nvl~r~v~-----~LSGGELQr~aIaa~l~rdADvY~FDE 239 (591)
T COG1245 177 VKGKVGELLKKV------------DERGKFDEVVERLGLENVLDRDVS-----ELSGGELQRVAIAAALLRDADVYFFDE 239 (591)
T ss_pred hcchHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhhh-----hcCchHHHHHHHHHHHhccCCEEEEcC
Confidence 12566655321 111356889999999999998875 899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 214 PTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 214 PtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
|||-||...+....+.+++|++.+++||++.||+. .+-.++|-|.++..
T Consensus 240 psSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa-vLD~lsD~vhI~YG 288 (591)
T COG1245 240 PSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA-VLDYLSDFVHILYG 288 (591)
T ss_pred CcccccHHHHHHHHHHHHHHhccCCeEEEEechHH-HHHHhhheeEEEec
Confidence 99999999999999999999988999999999986 57778899888863
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-21 Score=199.69 Aligned_cols=205 Identities=22% Similarity=0.293 Sum_probs=160.9
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccc-eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEe
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEK-AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP 114 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~-~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~ 114 (508)
+..+++.++++.+.. +. +++.+++..++.-+-.+++|+||+||||++|++.|...|..|.+.+++
T Consensus 360 ~p~l~i~~V~f~y~p------------~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-- 425 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTP------------SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-- 425 (582)
T ss_pred CCeeEEEeeeccCCC------------cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc--
Confidence 446888888877651 12 689999999999999999999999999999999999999999887753
Q ss_pred CChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCccCHHHH
Q 010509 115 FSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 115 ~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGer 193 (508)
|.+++|-.|...-+-.+.|.+-- +....+ | +..++ .+++-+..+||+. .+...+ .+||||||
T Consensus 426 -----r~ri~~f~Qhhvd~l~~~v~~vd-~~~~~~-p-G~~~e----e~r~hl~~~Gl~g~la~~si-----~~LSGGQK 488 (582)
T KOG0062|consen 426 -----RLRIKYFAQHHVDFLDKNVNAVD-FMEKSF-P-GKTEE----EIRRHLGSFGLSGELALQSI-----ASLSGGQK 488 (582)
T ss_pred -----cceecchhHhhhhHHHHHhHHHH-HHHHhC-C-CCCHH----HHHHHHHhcCCCchhhhccc-----cccCCcch
Confidence 45689999975433334444432 323332 2 22333 3566788999974 333323 58999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE-EEcCh
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL-YSGEA 272 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv-~~G~~ 272 (508)
-||++|.....+|.+|+|||||+.||-.+-..+.+.|+.. +-.||++|||. +.+...|+.+.+.++|++. ..|..
T Consensus 489 srvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~-~fi~~~c~E~Wvve~g~vt~ieg~~ 564 (582)
T KOG0062|consen 489 SRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDE-EFISSLCKELWVVEDGKVTPIEGGI 564 (582)
T ss_pred hHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcH-HHHhhcCceeEEEcCCcEEeeeccH
Confidence 9999999999999999999999999999999999998886 35899999996 4799999999999999987 55655
Q ss_pred hhH
Q 010509 273 SGA 275 (508)
Q Consensus 273 ~~~ 275 (508)
++-
T Consensus 565 ~~y 567 (582)
T KOG0062|consen 565 DKY 567 (582)
T ss_pred HHH
Confidence 443
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.84 E-value=6e-21 Score=183.03 Aligned_cols=147 Identities=18% Similarity=0.179 Sum_probs=109.0
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHH
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
+.+++|+++.. |++++|+||||||||||+|+|+|... +...|.++.. ..+++|.+.+++.+|+.|++.
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a-----~~~~~q~~~l~~~~~~~d~l~ 81 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA-----SSFELPPVKIFTSIRVSDDLR 81 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec-----CccCcccceEEEeccchhccc
Confidence 56788887765 79999999999999999999998542 1234554432 136677788999999999997
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 010509 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIA 223 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~ 223 (508)
++.. ....+. ++++++++.+++ .+|+++++|||++|+|+..+
T Consensus 82 ~~~s------~~~~e~-~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~~~~ 123 (199)
T cd03283 82 DGIS------YFYAEL-RRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNSRER 123 (199)
T ss_pred cccC------hHHHHH-HHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCHHHH
Confidence 6431 112232 567777777652 68999999999999999999
Q ss_pred HHHH-HHHHHHHcCCCEEEEEecCcchHHHhh--ccEEEEE
Q 010509 224 QQIL-SILLKLANGGRTIVMTIHQPSNMLYYM--FHKVLLL 261 (508)
Q Consensus 224 ~~i~-~~L~~l~~~g~tii~s~H~~~~~~~~~--~D~v~lL 261 (508)
..+. ..++++.+.|.|+|++||+++. +... .+++-.+
T Consensus 124 ~~l~~~ll~~l~~~~~tiiivTH~~~~-~~~~~~~~~v~~~ 163 (199)
T cd03283 124 QAASAAVLKFLKNKNTIGIISTHDLEL-ADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCcHHH-HHhhhcCCCeEEE
Confidence 8875 4788888779999999999863 4433 3444443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.9e-21 Score=192.47 Aligned_cols=187 Identities=22% Similarity=0.354 Sum_probs=143.6
Q ss_pred cccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC--------CCcccEEEECCEeCChhccccEEEEecCC
Q 010509 59 KKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL--------GRINGRITYNGKPFSNQMTRNTGFVTQED 130 (508)
Q Consensus 59 ~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~--------~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~ 130 (508)
.......+|+|+|++++||++++|+|+|||||||||++|.|.. .|++|.|.+--.. ..+.+|.+.
T Consensus 391 ~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt-------~~a~iPge~ 463 (593)
T COG2401 391 QRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT-------VSALIPGEY 463 (593)
T ss_pred heeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc-------hhhccCccc
Confidence 3344678999999999999999999999999999999999953 5888888763221 234555543
Q ss_pred C-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEE
Q 010509 131 V-LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLL 209 (508)
Q Consensus 131 ~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~il 209 (508)
. -+..-|+.|++.- .+.+ -..+.++|+..||.+---- ....+.||-|||.|+.||.++..+|.++
T Consensus 464 Ep~f~~~tilehl~s-----~tGD------~~~AveILnraGlsDAvly---Rr~f~ELStGQKeR~KLAkllaerpn~~ 529 (593)
T COG2401 464 EPEFGEVTILEHLRS-----KTGD------LNAAVEILNRAGLSDAVLY---RRKFSELSTGQKERAKLAKLLAERPNVL 529 (593)
T ss_pred ccccCchhHHHHHhh-----ccCc------hhHHHHHHHhhccchhhhh---hccHhhcCcchHHHHHHHHHHhcCCCcE
Confidence 2 2234566666531 1111 1235678999999763211 1334689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhh-ccEEEEEeCCeEE
Q 010509 210 FLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYM-FHKVLLLSEGYPL 267 (508)
Q Consensus 210 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~-~D~v~lL~~G~iv 267 (508)
+.||-.+.||+.++..+.+-+.+++++ |.|.+++||.|+ .+..+ =|+++++.-|++.
T Consensus 530 ~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpE-v~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 530 LIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPE-VGNALRPDTLILVGYGKVP 588 (593)
T ss_pred EhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHhccCCceeEEeeccccc
Confidence 999999999999999999999999865 999999999985 56666 5888888766543
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.5e-20 Score=172.85 Aligned_cols=74 Identities=16% Similarity=0.253 Sum_probs=68.4
Q ss_pred cCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 188 VSGGERKRVSIGQEIL----INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~----~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
||||||||++||++++ .+|+++++|||+++||+..+..+.+.|++++++|.|+|+++|+++ ....+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 8999999999999996 699999999999999999999999999999877899999999975 3468999999975
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-20 Score=181.84 Aligned_cols=153 Identities=20% Similarity=0.196 Sum_probs=116.5
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEE-EEecCCCCCCCCCHHHH
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTG-FVTQEDVLSPYLTVTET 141 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~-yv~Q~~~l~~~lTv~E~ 141 (508)
.+.+.+|++++.++|++++|.||||+||||||++++-. .+..++| |||.+....+
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~-----------------~~la~~g~~vpa~~~~~~------- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI-----------------VLMAQIGCFVPCDSADIP------- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH-----------------HHHHHhCCCcCcccEEEe-------
Confidence 35789999999999999999999999999999999821 1112233 5555432111
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHH--hhCCCEEEEeCC---CC
Q 010509 142 MVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEI--LINPSLLFLDEP---TS 216 (508)
Q Consensus 142 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL--~~~P~illLDEP---ts 216 (508)
.++++++.+|+.+.. . +++|.|+++++.+++++ +++|++++|||| |+
T Consensus 72 --------------------~~~~il~~~~l~d~~---~-----~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~ 123 (222)
T cd03285 72 --------------------IVDCILARVGASDSQ---L-----KGVSTFMAEMLETAAILKSATENSLIIIDELGRGTS 123 (222)
T ss_pred --------------------ccceeEeeeccccch---h-----cCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCC
Confidence 123455556665432 1 48999999999999999 899999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 217 GLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 217 gLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
+||+.+... ..++.+.+ .|.++|++||+ .++.+++|++..+++|++...++
T Consensus 124 ~lD~~~~~~--~il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 124 TYDGFGLAW--AIAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred hHHHHHHHH--HHHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 999988854 33355543 58999999997 35788999999999999987764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-19 Score=181.99 Aligned_cols=75 Identities=23% Similarity=0.370 Sum_probs=68.2
Q ss_pred ccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 187 GVSGGERKRVSIGQEILI----NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~----~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
.||||||||+++|++++. +|+++++||||++||+.....+.+.|+++.+ +.|+|++||++. +...+|+++.|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 599999999999987654 9999999999999999999999999999865 789999999986 457899999998
Q ss_pred CC
Q 010509 263 EG 264 (508)
Q Consensus 263 ~G 264 (508)
+|
T Consensus 247 ~~ 248 (276)
T cd03241 247 KE 248 (276)
T ss_pred Ee
Confidence 76
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.1e-19 Score=209.57 Aligned_cols=197 Identities=20% Similarity=0.272 Sum_probs=144.7
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh-cCC--------CCcccEEEECCEeCCh--------------hccc-
Q 010509 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG-GRL--------GRINGRITYNGKPFSN--------------QMTR- 121 (508)
Q Consensus 66 iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~-g~~--------~~~~G~I~~~G~~~~~--------------~~~~- 121 (508)
=|+||+.+|+-|.+++|.|-||||||||++-.. ..+ ...+--|.++..|+.+ .+|+
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~l 1584 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNF 1584 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHH
Confidence 489999999999999999999999999997433 110 1123346666655521 0000
Q ss_pred ------------------------------cEEEEecCCCCC--------------------------------CCCCHH
Q 010509 122 ------------------------------NTGFVTQEDVLS--------------------------------PYLTVT 139 (508)
Q Consensus 122 ------------------------------~i~yv~Q~~~l~--------------------------------~~lTv~ 139 (508)
.-|++.=+-.+. -.|||.
T Consensus 1585 FA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~ 1664 (1809)
T PRK00635 1585 YASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIE 1664 (1809)
T ss_pred HhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHH
Confidence 012221111111 236777
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhC---CCEEEEeCCCC
Q 010509 140 ETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILIN---PSLLFLDEPTS 216 (508)
Q Consensus 140 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~---P~illLDEPts 216 (508)
|.+.|+.. ..+..+.-+.|+.+||.... .| +....|||||.||+-+|.+|..+ +.+++|||||+
T Consensus 1665 ea~~~F~~---------~~~i~~~L~~L~~vGLgYl~---LG-q~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~ 1731 (1809)
T PRK00635 1665 EVAETFPF---------LKKIQKPLQALIDNGLGYLP---LG-QNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIAT 1731 (1809)
T ss_pred HHHHHhhc---------cHHHHHHHHHHHHcCCCeee---CC-CcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCC
Confidence 77776531 11234456788999997653 33 33458999999999999999875 78999999999
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE------eCCeEEEEcChhhHHH
Q 010509 217 GLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL------SEGYPLYSGEASGAMN 277 (508)
Q Consensus 217 gLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL------~~G~iv~~G~~~~~~~ 277 (508)
||++.....+++.|++|.+.|.|||++.|++. +.+.||.++=| +.|+|++.|+|+++.+
T Consensus 1732 GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~--~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1732 SLDNQQKSALLVQLRTLVSLGHSVIYIDHDPA--LLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH--HHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 99999999999999999999999999999985 44669999998 4679999999998865
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-19 Score=168.81 Aligned_cols=140 Identities=22% Similarity=0.316 Sum_probs=101.2
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHH
Q 010509 68 KGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTAL 147 (508)
Q Consensus 68 ~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~ 147 (508)
...+..+.++.++.|+|||||||||+++++.......+|.+... .+. +.-.++++....+
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~-~~~-----~~g~~~~~~~~~~-------------- 71 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRR-SGV-----KAGCIVAAVSAEL-------------- 71 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhcc-Ccc-----cCCCcceeeEEEE--------------
Confidence 44455555667999999999999999999877654333333321 000 0001112111100
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHH
Q 010509 148 LQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILI----NPSLLFLDEPTSGLDSTIA 223 (508)
Q Consensus 148 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~----~P~illLDEPtsgLD~~~~ 223 (508)
.-+. -+||+||+||+++|++|.. +|+++++|||++|+|+...
T Consensus 72 ----------------------------i~~~------~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~ 117 (162)
T cd03227 72 ----------------------------IFTR------LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDG 117 (162)
T ss_pred ----------------------------ehhe------eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHH
Confidence 0000 1499999999999999987 7899999999999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 224 QQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 224 ~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
..+.+.+.++.++|.++|++||++. +...+|+++.|..
T Consensus 118 ~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~~ 155 (162)
T cd03227 118 QALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEEE
Confidence 9999999998655899999999985 4467899999864
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-19 Score=188.16 Aligned_cols=171 Identities=24% Similarity=0.411 Sum_probs=128.0
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHH
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETM 142 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l 142 (508)
...++..+||.++||..+.|.||||||||+|.|+|+|+-+...|.... + ...++-|+||.|..- .-|.+|.+
T Consensus 494 ~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~------P-~~~~mFYIPQRPYms-~gtlRDQI 565 (728)
T KOG0064|consen 494 GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI------P-RPNNIFYIPQRPYMS-GGTLRDQI 565 (728)
T ss_pred cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeec------C-CCcceEeccCCCccC-cCccccee
Confidence 456889999999999999999999999999999999998765554432 1 134599999987654 33666655
Q ss_pred HHHHH---hcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCC----CCCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 010509 143 VFTAL---LQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGP----LTRGVSGGERKRVSIGQEILINPSLLFLDEPT 215 (508)
Q Consensus 143 ~~~~~---l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~----~~~~LSGGerqRv~Ia~aL~~~P~illLDEPt 215 (508)
-+.-. .+ .++.++ +..+.+|+.+.|++...+-.|=. .-.-||||||||+.+||.+-++|+.-+|||-|
T Consensus 566 IYPdS~e~~~-~kg~~d----~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcT 640 (728)
T KOG0064|consen 566 IYPDSSEQMK-RKGYTD----QDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECT 640 (728)
T ss_pred ecCCcHHHHH-hcCCCH----HHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhh
Confidence 43210 00 011222 23556777777776665443311 12359999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcch
Q 010509 216 SGLDSTIAQQILSILLKLANGGRTIVMTIHQPSN 249 (508)
Q Consensus 216 sgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~ 249 (508)
|+..+.....+.+..++ .|.+.+-+||+|+.
T Consensus 641 sAvsidvE~~i~~~ak~---~gi~llsithrpsl 671 (728)
T KOG0064|consen 641 SAVSIDVEGKIFQAAKD---AGISLLSITHRPSL 671 (728)
T ss_pred cccccchHHHHHHHHHh---cCceEEEeecCccH
Confidence 99999888888887765 48999999999984
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-18 Score=188.96 Aligned_cols=128 Identities=27% Similarity=0.428 Sum_probs=105.9
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCC---CEEEE
Q 010509 135 YLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINP---SLLFL 211 (508)
Q Consensus 135 ~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P---~illL 211 (508)
.|||.|...|+... + +..+.-+.|..+||.-.. .| .....|||||.|||-+|.+|..+. -+++|
T Consensus 783 ~MTveEA~~FF~~~------p---~I~rkLqtL~dVGLgYi~---LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI------P---KIARKLQTLVDVGLGYIK---LG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc------h---HHHHHHHHHHHcCcceEe---cC-CccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 47888888876532 1 123445677788987542 34 334589999999999999999877 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE------eCCeEEEEcChhhHHH
Q 010509 212 DEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL------SEGYPLYSGEASGAMN 277 (508)
Q Consensus 212 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL------~~G~iv~~G~~~~~~~ 277 (508)
||||+||-.....++++.|.+|.++|.|||++.|.+. +.+.+|.|+=| ..|+|+..|+|+++.+
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLd--VIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccc--eEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 9999999999999999999999999999999999985 56889999988 4689999999999876
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-18 Score=198.61 Aligned_cols=135 Identities=24% Similarity=0.345 Sum_probs=110.3
Q ss_pred CCCCHHHHHHHHHHhcCCCCCC------HHHHHHHHHHHHHHcCCCcc-cccccCCCCCCccCHHHHHHHHHHHHHhhCC
Q 010509 134 PYLTVTETMVFTALLQLPNSFT------EKEKIKCAEAVMTELGLSEC-KNSLIGGPLTRGVSGGERKRVSIGQEILINP 206 (508)
Q Consensus 134 ~~lTv~E~l~~~~~l~~~~~~~------~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P 206 (508)
-.+||.|.+.|...+..+.... -++..++++ .|+.+||.+. .|+.+. +|||||||||.||++|..+|
T Consensus 435 ~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~-----~LSgGE~QRv~LA~aL~~~~ 508 (943)
T PRK00349 435 SELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSGL 508 (943)
T ss_pred hcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchh-----hCCHHHHHHHHHHHHHhhCC
Confidence 4689999998855443221000 013334554 6888999866 677664 89999999999999999997
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE------eCCeEEEEcChhhHH
Q 010509 207 --SLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL------SEGYPLYSGEASGAM 276 (508)
Q Consensus 207 --~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL------~~G~iv~~G~~~~~~ 276 (508)
++++|||||+|||+..+..+++.|++++++|.|||+++|++.. + ..+|+|++| ++|++++.|+++++.
T Consensus 509 ~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~-i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 509 TGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDT-I-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred CCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 9999999999999999999999999998889999999999874 5 469999999 999999999998864
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-18 Score=196.81 Aligned_cols=135 Identities=23% Similarity=0.328 Sum_probs=107.5
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCH------HHHHHHHHHHHHHcCCCcc-cccccCCCCCCccCHHHHHHHHHHHHHhhCC
Q 010509 134 PYLTVTETMVFTALLQLPNSFTE------KEKIKCAEAVMTELGLSEC-KNSLIGGPLTRGVSGGERKRVSIGQEILINP 206 (508)
Q Consensus 134 ~~lTv~E~l~~~~~l~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P 206 (508)
-.|||.|.+.|...+........ ++..++. +.++.+||... .++.+ .+|||||+|||.||++|+.+|
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~-----~tLSGGE~QRv~LA~aL~~~~ 506 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAA-----GTLSGGEAQRIRLATQIGSGL 506 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCc-----CcCCHHHHHHHHHHHHHhhCC
Confidence 36899999888766532210000 1112222 24677888754 45555 499999999999999999986
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE------eCCeEEEEcChhhHH
Q 010509 207 --SLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL------SEGYPLYSGEASGAM 276 (508)
Q Consensus 207 --~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL------~~G~iv~~G~~~~~~ 276 (508)
++++|||||+|||+.....+++.|++++++|.|||+++|++. .+ ..||++++| ++|++++.|+++++.
T Consensus 507 ~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 507 TGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 899999999999999999999999999888999999999986 45 489999999 899999999998764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.7e-19 Score=169.08 Aligned_cols=155 Identities=15% Similarity=0.087 Sum_probs=104.8
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC-CCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHH
Q 010509 69 GITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL-GRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTAL 147 (508)
Q Consensus 69 ~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~-~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~ 147 (508)
..++++.+|++++|.|||||||||||++|++.. ....|... . ..+..++|..|. +..++..++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~------~-~~~~~i~~~dqi---~~~~~~~d~------ 84 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV------P-AESASIPLVDRI---FTRIGAEDS------ 84 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCc------c-ccccccCCcCEE---EEEecCccc------
Confidence 445556689999999999999999999999542 12222211 0 011123332221 111111111
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 010509 148 LQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQIL 227 (508)
Q Consensus 148 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~ 227 (508)
.+..+ +.++++++| ++.+.+++.+|+++++||||+|+|+.....+.
T Consensus 85 ----------------------------i~~~~-----s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~ 130 (202)
T cd03243 85 ----------------------------ISDGR-----STFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIA 130 (202)
T ss_pred ----------------------------ccCCc-----eeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHH
Confidence 11111 256666655 66667889999999999999999999988876
Q ss_pred H-HHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 228 S-ILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 228 ~-~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
. +++.+.+.+.++|++||+++ +...+|++..++.|++...++.++.
T Consensus 131 ~~ll~~l~~~~~~vi~~tH~~~--~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 131 YAVLEHLLEKGCRTLFATHFHE--LADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHHhcCCeEEEECChHH--HHHHhhcCCCeEEEEEEEEecCCee
Confidence 5 56667767899999999963 5567899999999999988876443
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-17 Score=166.30 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=62.1
Q ss_pred CccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhc-
Q 010509 186 RGVSGGERKRVSIGQEIL---------INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMF- 255 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~---------~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~- 255 (508)
.-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.|+++. .+ ++++|+.. .+..++
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~-ii~~~~~~-~~~~~~~ 256 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QT-FVTTTDLA-DFDALWL 256 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CE-EEEeCCch-hccchhc
Confidence 458999999999999985 6999999999999999999999999998753 34 45555433 355666
Q ss_pred --cEEEEEeCCeE
Q 010509 256 --HKVLLLSEGYP 266 (508)
Q Consensus 256 --D~v~lL~~G~i 266 (508)
++++-+++|++
T Consensus 257 ~~~~i~~l~~g~i 269 (270)
T cd03242 257 RRAQIFRVDAGTL 269 (270)
T ss_pred cCccEEEEeCcEE
Confidence 68999999985
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.1e-19 Score=179.60 Aligned_cols=214 Identities=22% Similarity=0.302 Sum_probs=155.5
Q ss_pred CceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC--CCcccEEEECC
Q 010509 35 HPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL--GRINGRITYNG 112 (508)
Q Consensus 35 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~--~~~~G~I~~~G 112 (508)
+.+.|.++|.+.+.. ++.++.|.|+.|-.|.-++++||||-||||||+.|+.+- -|..=+|++..
T Consensus 261 na~DIKiEnF~ISA~-------------Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCE 327 (807)
T KOG0066|consen 261 NAMDIKIENFDISAQ-------------GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCE 327 (807)
T ss_pred hcccceeeeeeeecc-------------cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeee
Confidence 356788888877654 577899999999999999999999999999999999974 23334455555
Q ss_pred EeCCh--------hc---cccEEEEecCCC-----CCCCCCHHHHHHHH-HHhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 010509 113 KPFSN--------QM---TRNTGFVTQEDV-----LSPYLTVTETMVFT-ALLQLPNSFTEKEKIKCAEAVMTELGLSEC 175 (508)
Q Consensus 113 ~~~~~--------~~---~~~i~yv~Q~~~-----l~~~lTv~E~l~~~-~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~ 175 (508)
+.+-. -. .++...+..++. --...|+.|-+.-. ..+|-. .....+.+++++|.-||.+.-
T Consensus 328 QEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELrai---GA~sAEarARRILAGLGFskE 404 (807)
T KOG0066|consen 328 QEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAI---GADSAEARARRILAGLGFSKE 404 (807)
T ss_pred eeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHh---ccccchhHHHHHHhhcCCChh
Confidence 44310 00 111222211111 12345777766432 334421 122344677889999999765
Q ss_pred cccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhc
Q 010509 176 KNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMF 255 (508)
Q Consensus 176 ~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~ 255 (508)
...+. ....|||-|-||++||||...|-+|.|||||+.||.....-+-+.|+.+. +|.++++||-. .+-..|
T Consensus 405 MQ~rP----t~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQg-FLD~VC 476 (807)
T KOG0066|consen 405 MQERP----TTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQG-FLDSVC 476 (807)
T ss_pred HhcCC----ccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccc-hHHHHH
Confidence 44333 24799999999999999999999999999999999999888889998885 69999999975 688899
Q ss_pred cEEEEEeCCeEE-EEcCh
Q 010509 256 HKVLLLSEGYPL-YSGEA 272 (508)
Q Consensus 256 D~v~lL~~G~iv-~~G~~ 272 (508)
..|+-|++-+.- |.|+-
T Consensus 477 tdIIHLD~qkLhyYrGNY 494 (807)
T KOG0066|consen 477 TDIIHLDNQKLHYYRGNY 494 (807)
T ss_pred HHHhhhhhhhhhhhcchH
Confidence 999999988775 45654
|
|
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.5e-18 Score=162.58 Aligned_cols=137 Identities=19% Similarity=0.169 Sum_probs=100.0
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHH
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETM 142 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l 142 (508)
++.+.+|+++++++|++++|.||||+||||+++++++.. .+.+.-.|| +...+.+++.|++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~----------------~la~~G~~v---pa~~~~l~~~d~I 75 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA----------------IMAQIGCFV---PAEYATLPIFNRL 75 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH----------------HHHHcCCCc---chhhcCccChhhe
Confidence 467999999999999999999999999999999999863 011111233 3334456666665
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 010509 143 VFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTI 222 (508)
Q Consensus 143 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~ 222 (508)
... ++..+..++.. +.+|+|++|+ ..+.+++++|+++++|||++|+|+..
T Consensus 76 ~~~------------------------~~~~d~~~~~~-----S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~ 125 (204)
T cd03282 76 LSR------------------------LSNDDSMERNL-----STFASEMSET-AYILDYADGDSLVLIDELGRGTSSAD 125 (204)
T ss_pred eEe------------------------cCCccccchhh-----hHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHH
Confidence 321 12222122222 3789999975 55567899999999999999999987
Q ss_pred HHHH-HHHHHHHHcCCCEEEEEecCcc
Q 010509 223 AQQI-LSILLKLANGGRTIVMTIHQPS 248 (508)
Q Consensus 223 ~~~i-~~~L~~l~~~g~tii~s~H~~~ 248 (508)
...+ ...++.+.+.|.++|++||+.+
T Consensus 126 ~~~l~~~il~~l~~~~~~~i~~TH~~~ 152 (204)
T cd03282 126 GFAISLAILECLIKKESTVFFATHFRD 152 (204)
T ss_pred HHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 6665 4567778777999999999975
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-16 Score=159.58 Aligned_cols=139 Identities=23% Similarity=0.285 Sum_probs=98.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN-----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPN 152 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~-----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~ 152 (508)
.-++|+||||||||||+++|+|.+.+.+|+|.++|+++.. +..+.+++++|++. .+.++|.++..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~-~~r~~v~~~~~--------- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDV-GIRTDVLDGCP--------- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccc-cccccccccch---------
Confidence 5789999999999999999999999999999999998741 34456778888653 34445544311
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 010509 153 SFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLK 232 (508)
Q Consensus 153 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~ 232 (508)
+. .| ........+|+++++|||++ ...+..+++.
T Consensus 182 ---k~--------------------------------~~-----~~~~i~~~~P~villDE~~~------~e~~~~l~~~ 215 (270)
T TIGR02858 182 ---KA--------------------------------EG-----MMMLIRSMSPDVIVVDEIGR------EEDVEALLEA 215 (270)
T ss_pred ---HH--------------------------------HH-----HHHHHHhCCCCEEEEeCCCc------HHHHHHHHHH
Confidence 00 01 12223336999999999974 2334445555
Q ss_pred HHcCCCEEEEEecCcchH-H-----------HhhccEEEEEeCCeEEEEcChhhH
Q 010509 233 LANGGRTIVMTIHQPSNM-L-----------YYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 233 l~~~g~tii~s~H~~~~~-~-----------~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
+. +|.++|+++|+++.. + ..+|||+++|++|+ ..|+++++
T Consensus 216 ~~-~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 216 LH-AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred Hh-CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 43 699999999986532 1 26689999999887 56666544
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-16 Score=153.46 Aligned_cols=158 Identities=18% Similarity=0.102 Sum_probs=108.2
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC-CCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHH
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL-GRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTET 141 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~-~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~ 141 (508)
++.+.+|++++.++ ++++|.||||||||||||++++.. -... |..+.. .+..++++.| +++.+++.|+
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~------g~~vp~-~~~~i~~~~~---i~~~~~~~~~ 85 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQI------GSFVPA-SKAEIGVVDR---IFTRIGASDD 85 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhcc------CCeecc-ccceecceee---EeccCCchhh
Confidence 35689999999988 999999999999999999998743 1111 222221 1245677755 4566777666
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH--HHHHHHHHHHHHhhCCCEEEEeCC---CC
Q 010509 142 MVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG--GERKRVSIGQEILINPSLLFLDEP---TS 216 (508)
Q Consensus 142 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG--GerqRv~Ia~aL~~~P~illLDEP---ts 216 (508)
+..+ .|. .|+++++-+...+.+|+++++||| |+
T Consensus 86 ls~g------------------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~ 123 (216)
T cd03284 86 LAGG------------------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGTS 123 (216)
T ss_pred hccC------------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCC
Confidence 5432 111 122333333334579999999999 88
Q ss_pred CCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHHH
Q 010509 217 GLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMN 277 (508)
Q Consensus 217 gLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~ 277 (508)
++|.... ...+++.+.+. +.++|++||+. ++.+++|++.-+.+|++...+..++...
T Consensus 124 ~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~~ 181 (216)
T cd03284 124 TYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVVF 181 (216)
T ss_pred hHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEEE
Confidence 8887552 23445555555 89999999995 4667889887788898888777666543
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.6e-16 Score=159.15 Aligned_cols=177 Identities=24% Similarity=0.338 Sum_probs=137.9
Q ss_pred cceeeeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHhcCCCCccc-EEEECCEeCChhccccEEEEecCCCCCCCC
Q 010509 63 EKAILKGITGMVKPG-----EMLAMLGPSGCGKTTLLTALGGRLGRING-RITYNGKPFSNQMTRNTGFVTQEDVLSPYL 136 (508)
Q Consensus 63 ~~~iL~~vs~~v~~G-----e~~ailG~nGsGKSTLL~~L~g~~~~~~G-~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~l 136 (508)
.+..+.+..+.|+.| |++..+|.||.||||++++++|+++|++| +|- .-.++|=||.-.-=..-
T Consensus 348 m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p----------~lnVSykpqkispK~~~ 417 (592)
T KOG0063|consen 348 MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIP----------VLNVSYKPQKISPKREG 417 (592)
T ss_pred ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCccc----------ccceeccccccCccccc
Confidence 355677888888877 57899999999999999999999988764 331 12467777765444456
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 010509 137 TVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTS 216 (508)
Q Consensus 137 Tv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPts 216 (508)
||++.+.--.+ +.-..-+.+.++++-|.+++..|.-+ .+|||||.|||++|..|=..+++.+.|||.+
T Consensus 418 tvR~ll~~kIr-------~ay~~pqF~~dvmkpL~ie~i~dqev-----q~lSggelQRval~KOGGKpAdvYliDEpsA 485 (592)
T KOG0063|consen 418 TVRQLLHTKIR-------DAYMHPQFVNDVMKPLQIENIIDQEV-----QGLSGGELQRVALALCLGKPADVYLIDEPSA 485 (592)
T ss_pred hHHHHHHHHhH-------hhhcCHHHHHhhhhhhhHHHHHhHHh-----hcCCchhhHHHHHHHhcCCCCceEEecCchh
Confidence 88887653211 11122345778888888888887766 4899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-cCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 217 GLDSTIAQQILSILLKLA-NGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 217 gLD~~~~~~i~~~L~~l~-~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
-||+..+...-+.+++.. +.++|-.++.||.- ..-.++||+++..
T Consensus 486 ylDSeQRi~AskvikRfilhakktafvVEhdfI-maTYladrvivf~ 531 (592)
T KOG0063|consen 486 YLDSEQRIIASKVIKRFILHAKKTAFVVEHDFI-MATYLADRVIVFE 531 (592)
T ss_pred hcChHHHHHHHHHHHHHHHhccchhhhhhhHHH-HHHhhcceeEEEe
Confidence 999999999999999864 56789999999975 3446889987754
|
|
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-15 Score=144.44 Aligned_cols=78 Identities=17% Similarity=0.072 Sum_probs=56.8
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQIL-SILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~-~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
.+|+|++|...+.. .+.+|+++++|||++|+|+.....+. .+++.+.++ +.++|++||+++ +.+++|+.--+.++
T Consensus 61 ~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~--l~~~~~~~~~v~~~ 137 (185)
T smart00534 61 TFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE--LTKLADEHPGVRNL 137 (185)
T ss_pred HHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH--HHHHhhcCccceEE
Confidence 68888776444332 34599999999999999999888865 556777764 899999999973 66777753333444
Q ss_pred eEE
Q 010509 265 YPL 267 (508)
Q Consensus 265 ~iv 267 (508)
+..
T Consensus 138 ~~~ 140 (185)
T smart00534 138 HMS 140 (185)
T ss_pred EEE
Confidence 443
|
|
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-13 Score=142.40 Aligned_cols=78 Identities=22% Similarity=0.296 Sum_probs=65.7
Q ss_pred CCccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhc
Q 010509 185 TRGVSGGERKRVSIGQEIL---------INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMF 255 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~---------~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~ 255 (508)
...+|+||+|++.+|+.|+ .+|+|++||||+++||+..+..+++.+.++ +..+++|+|++.. +...+
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~-~~~~~ 346 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLED-LADLL 346 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhh-hhhhh
Confidence 3578999999999999886 699999999999999999999999998764 4578999998753 44443
Q ss_pred --cEEEEEeCCeE
Q 010509 256 --HKVLLLSEGYP 266 (508)
Q Consensus 256 --D~v~lL~~G~i 266 (508)
+++..+++|++
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 57899999986
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.9e-14 Score=135.62 Aligned_cols=132 Identities=16% Similarity=0.149 Sum_probs=89.2
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC-CCcccEEEECCEeCChhccccEEEEecCCCCCC-CCCHHHHH
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL-GRINGRITYNGKPFSNQMTRNTGFVTQEDVLSP-YLTVTETM 142 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~-~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~-~lTv~E~l 142 (508)
.+=+|+++.=..+..++|.||||+|||||||.++... -+..|...... .-.++|..|....+. ..++.+
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~-------~~~~~~~d~i~~~l~~~~si~~-- 87 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPAD-------SATIGLVDKIFTRMSSRESVSS-- 87 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcC-------CcEEeeeeeeeeeeCCccChhh--
Confidence 3445555542223899999999999999999998421 13455544321 123677777532111 111111
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 010509 143 VFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVS--GGERKRVSIGQEILINPSLLFLDEPTSGLDS 220 (508)
Q Consensus 143 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--GGerqRv~Ia~aL~~~P~illLDEPtsgLD~ 220 (508)
++| .-|-||++++++++.+|+++++|||++|+|+
T Consensus 88 --------------------------------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~ 123 (213)
T cd03281 88 --------------------------------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDT 123 (213)
T ss_pred --------------------------------------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCH
Confidence 222 3467999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHcC---CCEEEEEecCcch
Q 010509 221 TIAQQI-LSILLKLANG---GRTIVMTIHQPSN 249 (508)
Q Consensus 221 ~~~~~i-~~~L~~l~~~---g~tii~s~H~~~~ 249 (508)
.....+ ...++++.+. +.++|++||+++.
T Consensus 124 ~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l 156 (213)
T cd03281 124 EDGAGLLIATIEHLLKRGPECPRVIVSTHFHEL 156 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHH
Confidence 865555 5688888754 3589999999763
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.3e-15 Score=141.78 Aligned_cols=88 Identities=25% Similarity=0.409 Sum_probs=65.2
Q ss_pred HHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC
Q 010509 161 KCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEIL----INPSLLFLDEPTSGLDSTIAQQILSILLKLANG 236 (508)
Q Consensus 161 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~----~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~ 236 (508)
+.+.+.++..++... .+|||||.+++||--|+ .+.++++||||.++||...+..+.+.|+++.+
T Consensus 121 ~~~~~~l~~~~i~~~-----------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISPE-----------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTTT-----------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred ccccccccccccccc-----------ccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 345556666555432 69999999999997764 46799999999999999999999999999875
Q ss_pred CCEEEEEecCcchHHHhhccEEEEEe
Q 010509 237 GRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 237 g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
+.-+|++||++ ..+..+|+.+.+.
T Consensus 189 ~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccccccc--ccccccccccccc
Confidence 47799999996 4778889887764
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.4e-14 Score=144.15 Aligned_cols=188 Identities=25% Similarity=0.320 Sum_probs=131.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh---hccc--cEEE-------------EecCCCCCCC
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN---QMTR--NTGF-------------VTQEDVLSPY 135 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~---~~~~--~i~y-------------v~Q~~~l~~~ 135 (508)
-+||++.+++|-||-||||-|++++|..+|.-|.-. ++-+... .+|. .-+| =||.-..+|.
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr 175 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPR 175 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHH
Confidence 368999999999999999999999999876654321 1111110 0000 0001 0111111110
Q ss_pred ---CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 010509 136 ---LTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLD 212 (508)
Q Consensus 136 ---lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLD 212 (508)
.+|.+++. +...++..+++++.+.|.+..++-+. .|||||-||.+||.+-+.+.++..+|
T Consensus 176 ~~k~~v~~~l~------------~~~~r~~~~~~~~~~~L~~~~~re~~-----~lsggelqrfaia~~~vq~advyMFD 238 (592)
T KOG0063|consen 176 AVKGTVGSLLD------------RKDERDNKEEVCDQLDLNNLLDREVE-----QLSGGELQRFAIAMVCVQKADVYMFD 238 (592)
T ss_pred HHHHHHHHHHH------------HHhhcccHHHHHHHHHHhhHHHhhhh-----hcccchhhhhhhhhhhhhhcceeEec
Confidence 12222221 22223356778888889888887775 89999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC-----CeEEEEcChhhHHHHHH
Q 010509 213 EPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE-----GYPLYSGEASGAMNYFA 280 (508)
Q Consensus 213 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~-----G~iv~~G~~~~~~~~f~ 280 (508)
||.+-||...+..-...++.+....+=||++.||++ .+..+.|-+..|.. |-+..--+..+..+-|-
T Consensus 239 EpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLs-VLDylSDFiCcLYGvp~aYGVVT~Pfsvr~giniFl 310 (592)
T KOG0063|consen 239 EPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLS-VLDYLSDFICCLYGVPSAYGVVTMPFSVREGINIFL 310 (592)
T ss_pred CCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeech-HHHhhhcceeEEecCCccceEEEeccchhhhhhhhh
Confidence 999999999999999999999988899999999987 56678899988863 33333334455555443
|
|
| >PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.3e-15 Score=142.92 Aligned_cols=132 Identities=31% Similarity=0.585 Sum_probs=126.4
Q ss_pred hhhhhhhhhcCCCCcChHHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010509 314 LEQKMLEKEIPSGMYRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLFSVLVSQGLGLAIGAM 393 (508)
Q Consensus 314 ~er~v~~rE~~~~~Y~~~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~ 393 (508)
.|+..+.||+.++.|++.+|.+|+.+.+++..++.++++.++.|++.|++.+ +|+.+++.+++..+++.++|.+++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~ 154 (210)
T PF01061_consen 77 RERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAAL 154 (210)
T ss_pred hhccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccc
Confidence 6899999999999999999999999999999999999999999999999888 77888889999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhccccC--CchhhHHHhhhhCHHHHHHHHHHHHHh
Q 010509 394 VMEQKSATILGSIIMQLFVLAGGYYVQ--NVPSFIAWIEYLSIGHHTYKLLLGSQY 447 (508)
Q Consensus 394 ~~~~~~a~~~~~~~~~~~~l~~Gf~i~--~ip~~~~W~~yiS~~~y~~eal~~nef 447 (508)
+++...+..+++++..++++++|.+.| .+|+|++|+.|+||++|+.|++..++|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 155 FPSFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999998 899999999999999999999999886
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.3e-14 Score=158.54 Aligned_cols=131 Identities=24% Similarity=0.252 Sum_probs=92.6
Q ss_pred ceEEEEeCC-eEEEEECCCCCcHHHHHHHHhcC-CCCcccEEEECCEeCChhccccEEEEecCCC-CCCCCCHHHHHHHH
Q 010509 69 GITGMVKPG-EMLAMLGPSGCGKTTLLTALGGR-LGRINGRITYNGKPFSNQMTRNTGFVTQEDV-LSPYLTVTETMVFT 145 (508)
Q Consensus 69 ~vs~~v~~G-e~~ailG~nGsGKSTLL~~L~g~-~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~ 145 (508)
.+|+.+.+| ++++|.||||+|||||||+++|. +.+..| .+||.... .++ +.+.+.
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G-----------------~~Vpa~~~~~~~---~~d~i~-- 370 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG-----------------IPIPANEHSEIP---YFEEIF-- 370 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC-----------------CCccCCcccccc---chhhee--
Confidence 378888887 99999999999999999999986 233333 13333221 111 111110
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 010509 146 ALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQ 225 (508)
Q Consensus 146 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~ 225 (508)
. ....++ .+ .+ ..+.+|+|+++++.|++.+ .+|+++++|||++|+|+.....
T Consensus 371 ~------~i~~~~---si---~~---------------~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~a 422 (771)
T TIGR01069 371 A------DIGDEQ---SI---EQ---------------NLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSA 422 (771)
T ss_pred e------ecChHh---HH---hh---------------hhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHH
Confidence 0 000100 01 00 1237999999999998876 8999999999999999999999
Q ss_pred H-HHHHHHHHcCCCEEEEEecCcch
Q 010509 226 I-LSILLKLANGGRTIVMTIHQPSN 249 (508)
Q Consensus 226 i-~~~L~~l~~~g~tii~s~H~~~~ 249 (508)
+ ..+|+.+.+.|.++|++||+...
T Consensus 423 la~aiLe~l~~~g~~viitTH~~eL 447 (771)
T TIGR01069 423 LAISILEYLLKQNAQVLITTHYKEL 447 (771)
T ss_pred HHHHHHHHHHhcCCEEEEECChHHH
Confidence 9 57888888889999999999754
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.1e-14 Score=121.06 Aligned_cols=73 Identities=18% Similarity=0.108 Sum_probs=61.7
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh----hccccEEEEecCCCCCCCCCHH
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----QMTRNTGFVTQEDVLSPYLTVT 139 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lTv~ 139 (508)
+.+|+++++++++||+++|+||||||||||++++. +|++.++|.++.. ..++.++|++|+ +++ -|++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~ti~ 72 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-IRLR 72 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-hhHH
Confidence 46899999999999999999999999999999986 7999999998743 345567788777 443 4999
Q ss_pred HHHHHH
Q 010509 140 ETMVFT 145 (508)
Q Consensus 140 E~l~~~ 145 (508)
|||.+.
T Consensus 73 ~Ni~~~ 78 (107)
T cd00820 73 LNIFLI 78 (107)
T ss_pred hhceee
Confidence 999873
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.8e-13 Score=129.32 Aligned_cols=133 Identities=17% Similarity=0.154 Sum_probs=90.6
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhc-CCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHH
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGG-RLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETM 142 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g-~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l 142 (508)
+.+.+|+++.+++|++++|.||||+||||+++++++ .+.+..|...... . -.++|..|- +..+...|++
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~------~~~~~~~~i---~~~~~~~d~~ 87 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S------ATLSIFDSV---LTRMGASDSI 87 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c------eEEeccceE---EEEecCcccc
Confidence 578999999999999999999999999999999999 4466677654331 1 113333221 1111111111
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 010509 143 VFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVS--GGERKRVSIGQEILINPSLLFLDEPTSGLDS 220 (508)
Q Consensus 143 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--GGerqRv~Ia~aL~~~P~illLDEPtsgLD~ 220 (508)
. .++| ..|-+|++-...-+++|+++|+|||.+|.|+
T Consensus 88 ~------------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~ 125 (222)
T cd03287 88 Q------------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGTST 125 (222)
T ss_pred c------------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCCh
Confidence 0 0122 2234444444455678999999999999997
Q ss_pred HHHHHH-HHHHHHHHcC-CCEEEEEecCcc
Q 010509 221 TIAQQI-LSILLKLANG-GRTIVMTIHQPS 248 (508)
Q Consensus 221 ~~~~~i-~~~L~~l~~~-g~tii~s~H~~~ 248 (508)
.....+ ..+++.+.+. +.++|++||+++
T Consensus 126 ~d~~~i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 126 HDGIAIAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred hhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence 777775 5677777765 899999999976
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=2e-12 Score=137.35 Aligned_cols=171 Identities=18% Similarity=0.235 Sum_probs=115.3
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC---Ch---------hccccEEEEecCCC
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF---SN---------QMTRNTGFVTQEDV 131 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~---~~---------~~~~~i~yv~Q~~~ 131 (508)
..+++++ +.+.+|+.++|+|+||+|||||+++|+|...++.|.|.+.|++- .+ .+++.+.++.+.+.
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~ 224 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ 224 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence 5689999 99999999999999999999999999999999999999966543 21 24567888987544
Q ss_pred CCCCCCHHHHH--HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH-HHHHHHHHHHHHhhCCCE
Q 010509 132 LSPYLTVTETM--VFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG-GERKRVSIGQEILINPSL 208 (508)
Q Consensus 132 l~~~lTv~E~l--~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG-GerqRv~Ia~aL~~~P~i 208 (508)
- +.+-. .+.+ .. +.|.+..-|-. .++- .-+++- -|-+ |++.
T Consensus 225 ~-----~~~r~~~~~~a-------------~~-iAEyfr~~g~~----Vll~---~Dsltr~A~A~-----rEis----- 268 (438)
T PRK07721 225 P-----ALMRIKGAYTA-------------TA-IAEYFRDQGLN----VMLM---MDSVTRVAMAQ-----REIG----- 268 (438)
T ss_pred C-----HHHHHHHHHHH-------------HH-HHHHHHHCCCc----EEEE---EeChHHHHHHH-----HHHH-----
Confidence 1 11111 1111 01 11122222211 1100 001110 0111 1111
Q ss_pred EEEeCC--CCCCCHHHHHHHHHHHHHHHc--CCC-----EEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 209 LFLDEP--TSGLDSTIAQQILSILLKLAN--GGR-----TIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 209 llLDEP--tsgLD~~~~~~i~~~L~~l~~--~g~-----tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
+.+.|| |+|+|+.....+.++++++.+ +|. ||++.+||+++ ..+|++..+.+|+++.+++..+
T Consensus 269 l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 269 LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence 123464 679999999999999999974 575 99999999974 6799999999999999998754
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-13 Score=131.38 Aligned_cols=45 Identities=22% Similarity=0.331 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHc
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPT-----SGLDSTIAQQILSILLKLAN 235 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPt-----sgLD~~~~~~i~~~L~~l~~ 235 (508)
-|++++.||++++.+|+++++|||| +|||+.++.++.+.++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999 99999999999999999974
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-12 Score=144.48 Aligned_cols=77 Identities=22% Similarity=0.328 Sum_probs=69.9
Q ss_pred CccCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 186 RGVSGGERKRVSIGQEILIN----PSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~----P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
+.+||||+||++||++++.. |+++++||||+|||+.++..+.+.|+++++ +++||++||+|. ....+|++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 57899999999999999985 699999999999999999999999999975 899999999985 33689999999
Q ss_pred eCCe
Q 010509 262 SEGY 265 (508)
Q Consensus 262 ~~G~ 265 (508)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8763
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.1e-11 Score=117.20 Aligned_cols=148 Identities=14% Similarity=0.090 Sum_probs=121.1
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010509 329 RLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLFSVLVSQGLGLAIGAMVMEQKSATILGSIIM 408 (508)
Q Consensus 329 ~~~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~ 408 (508)
+.+.++++|.+..++..++.++++..+.|++.|++.. .++.+++.+++..++..++|.++++++++...+ ++.+.+
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~--~~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRF--LALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH--HHHHHH
Confidence 4456799999999999999999999999999999864 577788888889999999999999999876543 444555
Q ss_pred HHHHHhhccccC--CchhhHHHhhhhCHHHHHHHHHHHHHhCCCCcccCCCCCCccccCCcccceeeCCCcchhHHHHHH
Q 010509 409 QLFVLAGGYYVQ--NVPSFIAWIEYLSIGHHTYKLLLGSQYNYNETYPCGDSGGLCLVGEHPTIKKVGLHRKYYSVIALA 486 (508)
Q Consensus 409 ~~~~l~~Gf~i~--~ip~~~~W~~yiS~~~y~~eal~~nef~~~~~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~~~il~ 486 (508)
.+.++++|.+.| .+|.|++|+.|++|++|+.+++-...+++. ....|.++++++
T Consensus 134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~------------------------~~~~~~~~~~L~ 189 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGN------------------------DGTLWQAVAVLL 189 (208)
T ss_pred HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCc------------------------HHHHHHHHHHHH
Confidence 667777888888 999999999999999999999977766531 013577889999
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 010509 487 IMLVGYRLIAYIALMRIG 504 (508)
Q Consensus 487 ~~~~~~~~~~~~~l~~~~ 504 (508)
++.+++.++++...|+.|
T Consensus 190 ~~~~v~~~la~~~~~~~~ 207 (208)
T TIGR03062 190 LILVVFLALSLLSARRKR 207 (208)
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 999988888888776533
|
This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057. |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-12 Score=148.15 Aligned_cols=81 Identities=22% Similarity=0.243 Sum_probs=64.6
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILS-ILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
..+|+|++|++.|++++ ++|+++++|||++|+|+.....+.. ++..+.+.|.++|++||++. .....+|+..++ ++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~e-l~~~~~~~~~v~-~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKE-LKALMYNREGVE-NA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHH-HHHHHhcCCCeE-EE
Confidence 37999999999999988 8999999999999999999998864 67777777999999999965 343445554443 45
Q ss_pred eEEEE
Q 010509 265 YPLYS 269 (508)
Q Consensus 265 ~iv~~ 269 (508)
.+.++
T Consensus 466 ~~~~d 470 (782)
T PRK00409 466 SVEFD 470 (782)
T ss_pred EEEEe
Confidence 55543
|
|
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.4e-12 Score=140.08 Aligned_cols=76 Identities=21% Similarity=0.379 Sum_probs=69.3
Q ss_pred CccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 186 RGVSGGERKRVSIGQEILI----NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~----~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
+.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+||++||+|. +..++|+.+++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 4589999999999999997 5899999999999999999999999999975 699999999985 44799999999
Q ss_pred eCC
Q 010509 262 SEG 264 (508)
Q Consensus 262 ~~G 264 (508)
+++
T Consensus 506 ~k~ 508 (553)
T PRK10869 506 SKE 508 (553)
T ss_pred ecc
Confidence 874
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.4e-12 Score=125.66 Aligned_cols=176 Identities=16% Similarity=0.184 Sum_probs=104.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCccc--EEEE--CCEe-CCh-hccc---cEEEEecCCCCCCCCCH---H
Q 010509 72 GMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRING--RITY--NGKP-FSN-QMTR---NTGFVTQEDVLSPYLTV---T 139 (508)
Q Consensus 72 ~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G--~I~~--~G~~-~~~-~~~~---~i~yv~Q~~~l~~~lTv---~ 139 (508)
..+.+||.++|+||+|+|||||++.|++......+ .+.+ -|.+ .+. ++.+ .+-.+.+-+. .+...+ +
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~~~~ 89 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQVAE 89 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHHHHH
Confidence 46789999999999999999999999998754332 2222 2221 111 1111 1222333222 111000 0
Q ss_pred HHHHHHHHhcC-CCC----CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH--------HHHHHHHHHHhhCC
Q 010509 140 ETMVFTALLQL-PNS----FTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE--------RKRVSIGQEILINP 206 (508)
Q Consensus 140 E~l~~~~~l~~-~~~----~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe--------rqRv~Ia~aL~~~P 206 (508)
.-+..+...+. .+. +++- .+..+.. ++..+ ...+.+|||+ +||+++|+++..++
T Consensus 90 ~~~~~a~~~~~~G~~vll~iDei---~r~a~a~---------~ev~~-~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~g 156 (249)
T cd01128 90 MVLEKAKRLVEHGKDVVILLDSI---TRLARAY---------NTVVP-PSGKILSGGVDANALHKPKRFFGAARNIEEGG 156 (249)
T ss_pred HHHHHHHHHHHCCCCEEEEEECH---HHhhhhh---------hhccc-cCCCCCCCCcChhhhhhhHHHHHHhcCCCCCC
Confidence 11111110000 000 0000 0111111 22222 3335689999 99999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHH-HHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 207 SLLFLDEPTSGLDSTIAQQ-ILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 207 ~illLDEPtsgLD~~~~~~-i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
+|.+| ||+.+|+.+... ++ +.++...+.|.|+.+|++. ....+|.|.+|+.|++.
T Consensus 157 sIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la--~~~~~paI~vl~s~sr~ 212 (249)
T cd01128 157 SLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLA--ERRIFPAIDILKSGTRK 212 (249)
T ss_pred ceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHh--hCCCCCeEEEcCCCCcc
Confidence 99999 999999655544 54 5555546789999999986 45789999999999873
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-12 Score=124.75 Aligned_cols=63 Identities=25% Similarity=0.500 Sum_probs=54.3
Q ss_pred CccCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcc
Q 010509 186 RGVSGGERKRVSIGQEILINP---SLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPS 248 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P---~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~ 248 (508)
..+|.|+||.+.++..+...+ .++++|||-++|+|..+..+++.|+++++.+.-+|+|||.|.
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 456999999999999988776 899999999999999999999999988776889999999985
|
|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.5e-12 Score=139.75 Aligned_cols=79 Identities=25% Similarity=0.333 Sum_probs=69.5
Q ss_pred CCCccCHHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHH
Q 010509 184 LTRGVSGGERKRVSIGQEIL----------INPSLLFLDEPT-SGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLY 252 (508)
Q Consensus 184 ~~~~LSGGerqRv~Ia~aL~----------~~P~illLDEPt-sgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~ 252 (508)
.+..||||||||++||++|+ .+|++++||||| ++||+.+...+.+.|+++ +|.|||++||++. ..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--ch
Confidence 34689999999999999887 599999999998 789999999999999998 5899999999975 44
Q ss_pred hhccEEEEEeC-CeE
Q 010509 253 YMFHKVLLLSE-GYP 266 (508)
Q Consensus 253 ~~~D~v~lL~~-G~i 266 (508)
..+|++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 67899999986 543
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.6e-12 Score=147.74 Aligned_cols=80 Identities=24% Similarity=0.347 Sum_probs=73.8
Q ss_pred CCCccCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHh
Q 010509 184 LTRGVSGGERKRVSIGQEILI----------NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYY 253 (508)
Q Consensus 184 ~~~~LSGGerqRv~Ia~aL~~----------~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~ 253 (508)
.++.|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+++.+.|++|+++||++. ....
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~-~~~~ 1025 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPE-FRER 1025 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHh
Confidence 457999999999999999986 79999999999999999999999999999888999999999986 5778
Q ss_pred hccEEEEEeCC
Q 010509 254 MFHKVLLLSEG 264 (508)
Q Consensus 254 ~~D~v~lL~~G 264 (508)
++|+|.|++.|
T Consensus 1026 ~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1026 IPHRILVKKTN 1036 (1042)
T ss_pred hCCEEEEEECC
Confidence 99999999754
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.5e-11 Score=119.16 Aligned_cols=150 Identities=17% Similarity=0.226 Sum_probs=93.4
Q ss_pred EEeCCeEEEEECCCCCcHHHH-HHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC
Q 010509 73 MVKPGEMLAMLGPSGCGKTTL-LTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP 151 (508)
Q Consensus 73 ~v~~Ge~~ailG~nGsGKSTL-L~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~ 151 (508)
-+++|++++|.|+|||||||| ++.+++..++ | ..+.|+..+ .|..+.+.....+..
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~--g--------------~~~~yi~~e------~~~~~~~~~~~~~g~- 76 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQN--G--------------YSVSYVSTQ------LTTTEFIKQMMSLGY- 76 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC--C--------------CcEEEEeCC------CCHHHHHHHHHHhCC-
Confidence 489999999999999999999 7888886532 1 123555532 245555544333211
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCC----CHHHH
Q 010509 152 NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEIL----INPSLLFLDEPTSGL----DSTIA 223 (508)
Q Consensus 152 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~----~~P~illLDEPtsgL----D~~~~ 223 (508)
.- ++.... +.-...+. . ..+|+++.++-.+.+.+- .+|+++++||||+++ |+...
T Consensus 77 ---~~-------~~~~~~-~~l~~~~~-----~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~ 139 (230)
T PRK08533 77 ---DI-------NKKLIS-GKLLYIPV-----Y-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAV 139 (230)
T ss_pred ---ch-------HHHhhc-CcEEEEEe-----c-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHH
Confidence 11 011110 11001110 1 146777665555544333 369999999999999 88888
Q ss_pred HHHHHHHHHHHcCCCEEEEEecCcch------HHHhhccEEEEEe
Q 010509 224 QQILSILLKLANGGRTIVMTIHQPSN------MLYYMFHKVLLLS 262 (508)
Q Consensus 224 ~~i~~~L~~l~~~g~tii~s~H~~~~------~~~~~~D~v~lL~ 262 (508)
.++.+.++++++.|.|+++++|+... .+..++|-++.|+
T Consensus 140 ~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 140 NDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 89999999998878888776654320 1245667777776
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.7e-11 Score=113.95 Aligned_cols=145 Identities=20% Similarity=0.147 Sum_probs=96.2
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHH
Q 010509 80 LAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEK 159 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~ 159 (508)
+.|.||+|+|||||.--++-.... +| +.+.|+.=+ .|..+.+.....+. .+.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-------~g--------~~v~~~s~e------~~~~~~~~~~~~~g----~~~~-- 54 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-------RG--------EPGLYVTLE------ESPEELIENAESLG----WDLE-- 54 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-------CC--------CcEEEEECC------CCHHHHHHHHHHcC----CChH--
Confidence 678999999999987755432100 11 123444321 24444443332221 1111
Q ss_pred HHHHHHHHHHcCCCcccccccCCCCCCccCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHHHH
Q 010509 160 IKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK------RVSIGQEILINPSLLFLDEPTSGLD---STIAQQILSIL 230 (508)
Q Consensus 160 ~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq------Rv~Ia~aL~~~P~illLDEPtsgLD---~~~~~~i~~~L 230 (508)
-+...|+....+.. +..+|+||+| +.........+|+++++|||++.+| ......+.+.+
T Consensus 55 ------~l~~~g~l~~~d~~-----~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~ 123 (187)
T cd01124 55 ------RLEDEGLLAIVDAD-----PDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLL 123 (187)
T ss_pred ------HHHhcCCeEEEecC-----ccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHH
Confidence 12234444444433 3478999998 4555555667999999999999999 88888899999
Q ss_pred HHHHcCCCEEEEEecCcch--------HHHhhccEEEEEe
Q 010509 231 LKLANGGRTIVMTIHQPSN--------MLYYMFHKVLLLS 262 (508)
Q Consensus 231 ~~l~~~g~tii~s~H~~~~--------~~~~~~D~v~lL~ 262 (508)
+.+++.|.|+|+++|+... .+..++|.++.|+
T Consensus 124 ~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 124 FALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred HHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 9998889999999998653 2568899999887
|
A related protein is found in archaea. |
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-11 Score=119.58 Aligned_cols=134 Identities=19% Similarity=0.148 Sum_probs=88.9
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-CcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHH
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-RINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTET 141 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~ 141 (508)
++.+-+|+++..++|++++|.||||+||||+++++++..- ... |..+..+ ...++++ +.++..+...|+
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~------G~~vpa~-~~~i~~~---~~i~~~~~~~d~ 85 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQM------GMDVPAK-SMRLSLV---DRIFTRIGARDD 85 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHc------CCccCcc-ccEeccc---cEEEEecCcccc
Confidence 3578899999999999999999999999999999998531 111 1111110 0011111 222222222222
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH--HHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 010509 142 MVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG--GERKRVSIGQEILINPSLLFLDEPTSGLD 219 (508)
Q Consensus 142 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG--GerqRv~Ia~aL~~~P~illLDEPtsgLD 219 (508)
+.. ++|. .|-+|++-....+++|+++++|||.+|+|
T Consensus 86 ~~~------------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~ 123 (218)
T cd03286 86 IMK------------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGTS 123 (218)
T ss_pred ccc------------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCC
Confidence 211 1121 23444444444567899999999999999
Q ss_pred HHHHHHHHHH-HHHHHcC-CCEEEEEecCcc
Q 010509 220 STIAQQILSI-LLKLANG-GRTIVMTIHQPS 248 (508)
Q Consensus 220 ~~~~~~i~~~-L~~l~~~-g~tii~s~H~~~ 248 (508)
+.....+... ++.+.+. +.++|++||+++
T Consensus 124 ~~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 124 THDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred chHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 9999998888 7778765 899999999975
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-10 Score=128.54 Aligned_cols=136 Identities=19% Similarity=0.329 Sum_probs=102.6
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH------HHHcCCCcc-cccccCCCCCCccCHHHHHHHHHHHHHhhCC
Q 010509 134 PYLTVTETMVFTALLQLPNSFTEKEKIKCAEAV------MTELGLSEC-KNSLIGGPLTRGVSGGERKRVSIGQEILINP 206 (508)
Q Consensus 134 ~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~------l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P 206 (508)
..|++.|.+.|...+.+... .....++...++ |-.+||.-. .++. ...|||||.||+-+|..+=++=
T Consensus 427 ~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~-----a~TLSGGEaQRIRLAtqiGS~L 500 (935)
T COG0178 427 SEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYLTLSRS-----AGTLSGGEAQRIRLATQIGSGL 500 (935)
T ss_pred hhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCccccccc-----CCCcChhHHHHHHHHHHhcccc
Confidence 35778888888776653221 111112222333 334566543 2333 3489999999999999997763
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE------eCCeEEEEcChhhHHH
Q 010509 207 --SLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL------SEGYPLYSGEASGAMN 277 (508)
Q Consensus 207 --~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL------~~G~iv~~G~~~~~~~ 277 (508)
=+++||||+-||-+..-.++++.|++|++.|-|+|++.||++ ....+|+|+=| +.|+|++.|+++++++
T Consensus 501 tGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed--ti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 501 TGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED--TIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred eeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH--HHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 467999999999999999999999999999999999999964 55789999987 6789999999998864
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.5e-12 Score=118.74 Aligned_cols=78 Identities=10% Similarity=0.141 Sum_probs=63.9
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEP--TSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEP--tsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
.+||+|+.+..+++..+.+|+++++||| +.++| ..+++.+.++.+.|+++|+++|+. ......|++..+.+|
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~~ 151 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPGG 151 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCCc
Confidence 6999999999999999999999999995 43444 445677777666789999999984 355778999999999
Q ss_pred eEEEEc
Q 010509 265 YPLYSG 270 (508)
Q Consensus 265 ~iv~~G 270 (508)
+++.--
T Consensus 152 ~i~~~~ 157 (174)
T PRK13695 152 RVYELT 157 (174)
T ss_pred EEEEEc
Confidence 987653
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.8e-11 Score=122.89 Aligned_cols=142 Identities=15% Similarity=0.159 Sum_probs=96.7
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEe-CChhccccEEEEecCCC-CCCCCCHHHHHHHHHH
Q 010509 70 ITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP-FSNQMTRNTGFVTQEDV-LSPYLTVTETMVFTAL 147 (508)
Q Consensus 70 vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~-~~~~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~ 147 (508)
+++.+++|+.++|.||+|||||||+++|++.+++..|.+.+.... +....+..+.++.+... -..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~------------- 203 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLA------------- 203 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcC-------------
Confidence 557788999999999999999999999999998888877775321 00001112222211100 000
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 010509 148 LQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQIL 227 (508)
Q Consensus 148 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~ 227 (508)
.++ ..-.+..+|-.+|+++++|||.+ .+.+
T Consensus 204 ---------------------------------------~~~----~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~ 233 (308)
T TIGR02788 204 ---------------------------------------KVT----PKDLLQSCLRMRPDRIILGELRG-------DEAF 233 (308)
T ss_pred ---------------------------------------ccC----HHHHHHHHhcCCCCeEEEeccCC-------HHHH
Confidence 111 11134456778999999999996 3456
Q ss_pred HHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHH
Q 010509 228 SILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 228 ~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~ 276 (508)
+.++.+...+.+++.|+|..+ .....||+..|..|++...|.+.+..
T Consensus 234 ~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 234 DFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 677776643446799999987 44568999999999988888877665
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.8e-11 Score=106.40 Aligned_cols=64 Identities=20% Similarity=0.283 Sum_probs=49.3
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchH
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTS----------GLDSTIAQQILSILLKLANGGRTIVMTIHQPSNM 250 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPts----------gLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~ 250 (508)
..+.++.++...+.+...+|+++++|||++ +.|......+.+++....+.+.|+|+++|.....
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 345666677888888999999999999994 5555656666666666656699999999987643
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.7e-11 Score=136.63 Aligned_cols=77 Identities=27% Similarity=0.327 Sum_probs=68.4
Q ss_pred CCCccCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccE
Q 010509 184 LTRGVSGGERK------RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHK 257 (508)
Q Consensus 184 ~~~~LSGGerq------Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~ 257 (508)
.+..|||||++ |+++|++++.+|+++++||||+|||+..+..+.+.|..+++.+.+||++||++. +...||+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~--~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE--LKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH--HHHhCCe
Confidence 45689999999 455566788999999999999999999999999999998777889999999974 5688999
Q ss_pred EEEEe
Q 010509 258 VLLLS 262 (508)
Q Consensus 258 v~lL~ 262 (508)
+++|.
T Consensus 863 ~~~l~ 867 (880)
T PRK03918 863 VIRVS 867 (880)
T ss_pred EEEEE
Confidence 99998
|
|
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.5e-10 Score=126.13 Aligned_cols=69 Identities=22% Similarity=0.191 Sum_probs=60.6
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHcCCCEEEEEecCcchHH--------HhhccEEEEEeCCeEEEEcC
Q 010509 203 LINPSLLFLDEPTSGL-DSTIAQQILSILLKLANGGRTIVMTIHQPSNML--------YYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 203 ~~~P~illLDEPtsgL-D~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~--------~~~~D~v~lL~~G~iv~~G~ 271 (508)
..+|+++++|||+.+| |+..+..+.+.++++++.|.+++++||+++... .+.||+.++|.+|++...|.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 5799999999999999 799999999999999888999999999997532 26799999999998876654
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.5e-10 Score=105.37 Aligned_cols=78 Identities=24% Similarity=0.358 Sum_probs=58.5
Q ss_pred CCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
...-|-||-=---+.+. .++--+.+||||-++|.+.-+.+++..|+++++.|.-+|+.||.|-... ----+|+-++.+
T Consensus 127 Lh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlA-iP~A~I~~~~~~ 204 (233)
T COG3910 127 LHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLA-IPGAEIYEISES 204 (233)
T ss_pred hhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhhee-CCCcEEEEEecC
Confidence 34679998654333333 4567899999999999999999999999999999999999999984221 112345555544
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-10 Score=135.23 Aligned_cols=79 Identities=30% Similarity=0.300 Sum_probs=69.8
Q ss_pred CCCccCHHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhc
Q 010509 184 LTRGVSGGERKRVSIGQEILI--------NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMF 255 (508)
Q Consensus 184 ~~~~LSGGerqRv~Ia~aL~~--------~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~ 255 (508)
.+++|||||+++++||++|+. +|++||+||||+|||+.+...+++.|.++.+.|+||+++||... ...++-
T Consensus 946 ~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~-l~~~i~ 1024 (1047)
T PRK10246 946 DTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEA-MKERIP 1024 (1047)
T ss_pred CcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHH-HHHhcc
Confidence 457999999999999999996 89999999999999999999999999999888999999999754 455666
Q ss_pred cEEEEEeC
Q 010509 256 HKVLLLSE 263 (508)
Q Consensus 256 D~v~lL~~ 263 (508)
.+|.|-..
T Consensus 1025 ~qi~V~k~ 1032 (1047)
T PRK10246 1025 VQIKVKKI 1032 (1047)
T ss_pred ceEEEEEC
Confidence 67777654
|
|
| >TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=3e-09 Score=104.23 Aligned_cols=146 Identities=16% Similarity=0.216 Sum_probs=119.1
Q ss_pred cChHHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010509 328 YRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLFSVLVSQGLGLAIGAMVMEQKSATILGSII 407 (508)
Q Consensus 328 Y~~~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~ 407 (508)
.+...|+++|.+.+++..++..+++..+.|++.+++. ..++.+++..++..++..++|.++++..++.+.+..+.+++
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~~~~ 164 (236)
T TIGR01247 87 ASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSMEGFQIIMSML 164 (236)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3578899999999999999999999999998877554 34566666667777888999999999999999999999999
Q ss_pred HHHHHHhhccccC--CchhhHHHhhhhCHHHHHHHHHHHHHhCCCCcccCCCCCCccccCCcccceeeCCCcchhHHHHH
Q 010509 408 MQLFVLAGGYYVQ--NVPSFIAWIEYLSIGHHTYKLLLGSQYNYNETYPCGDSGGLCLVGEHPTIKKVGLHRKYYSVIAL 485 (508)
Q Consensus 408 ~~~~~l~~Gf~i~--~ip~~~~W~~yiS~~~y~~eal~~nef~~~~~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~~~il 485 (508)
..+++.+||.+.| .+|+|++|+.|++|++|+.|++-....++. + ..+.+.+++++
T Consensus 165 ~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~~~----~-------------------~~~~~~~~~~l 221 (236)
T TIGR01247 165 MLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAGVS----P-------------------TFPLEQDLLVL 221 (236)
T ss_pred HHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhCCC----c-------------------ccchHHHHHHH
Confidence 9999999999999 899999999999999999999665433321 0 01345578888
Q ss_pred HHHHHHHHHHHHH
Q 010509 486 AIMLVGYRLIAYI 498 (508)
Q Consensus 486 ~~~~~~~~~~~~~ 498 (508)
+++.+++.+++..
T Consensus 222 ~~~~~~~~~l~~~ 234 (236)
T TIGR01247 222 TLLAVIFVGIAAV 234 (236)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777654
|
This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.11 E-value=3e-10 Score=120.19 Aligned_cols=155 Identities=18% Similarity=0.141 Sum_probs=110.5
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHH
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
..+++++ +.+.+|+.++|+|+||+|||||+++|++..+++.|.|.+.|++. .+|.|.+.
T Consensus 144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg--------------------~ev~e~~~ 202 (432)
T PRK06793 144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG--------------------REVKDFIR 202 (432)
T ss_pred CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc--------------------ccHHHHHH
Confidence 4688885 99999999999999999999999999999888888776665431 35666543
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHh-------hCCCEEEEeCCCC
Q 010509 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEIL-------INPSLLFLDEPTS 216 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~-------~~P~illLDEPts 216 (508)
... ..-|+.+. ..+ ....+-|.|+|+|+..+.+.+ .++-++++|+||+
T Consensus 203 ~~l---------------------~~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr 257 (432)
T PRK06793 203 KEL---------------------GEEGMRKS--VVV--VATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTR 257 (432)
T ss_pred HHh---------------------hhccccee--EEE--EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHH
Confidence 211 11122111 011 123478999999999998877 7899999999999
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 217 GLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 217 gLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
..|+. .++-..+.+.-..|.+..+.+|. + ++++|.-...+|.+...+.
T Consensus 258 ~a~A~--reisl~~~e~p~~G~~~~~~s~l-~----~L~ERag~~~~GSiT~~~t 305 (432)
T PRK06793 258 FADAR--RSVDIAVKELPIGGKTLLMESYM-K----KLLERSGKTQKGSITGIYT 305 (432)
T ss_pred HHHHH--HHHHHHhcCCCCCCeeeeeeccc-h----hHHHHhccCCCcceEEEEE
Confidence 99996 55555666665458888888884 3 2334444457888765554
|
|
| >TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.4e-09 Score=102.99 Aligned_cols=148 Identities=11% Similarity=0.159 Sum_probs=107.6
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHH
Q 010509 329 RLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLFSVLVSQGLGLAIGAMVM---EQKSATILGS 405 (508)
Q Consensus 329 ~~~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~---~~~~a~~~~~ 405 (508)
+...|+++|.+..++..++..+++ .+++++.|++..... +..++.+.+....+.+++.+++++++ +.+.+..+++
T Consensus 77 ~~~~~l~g~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~ 154 (232)
T TIGR00025 77 PRLGILAGRSLAVVARVFLQTLIL-LVIGFVLGFRFAGGA-LTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVAN 154 (232)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 678899999988888876665444 455677898865443 33334444555666677777777764 5555588888
Q ss_pred HHHHHHHHhhccccC--CchhhHHHhhhhCHHHHHHHHHHHHHhCCCCcccCCCCCCccccCCcccceeeCCCcchhHHH
Q 010509 406 IIMQLFVLAGGYYVQ--NVPSFIAWIEYLSIGHHTYKLLLGSQYNYNETYPCGDSGGLCLVGEHPTIKKVGLHRKYYSVI 483 (508)
Q Consensus 406 ~~~~~~~l~~Gf~i~--~ip~~~~W~~yiS~~~y~~eal~~nef~~~~~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~~~ 483 (508)
++..+++++||.+.| .+|.|++|+.+++|++|+.+++-..-.++. +....|.+++
T Consensus 155 ~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~~~-----------------------~~~~~~~~~~ 211 (232)
T TIGR00025 155 LVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATVSV-----------------------DTFGAVRDLV 211 (232)
T ss_pred HHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcCCC-----------------------ChhhHHHHHH
Confidence 999999999999999 999999999999999999998755433221 0123466788
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010509 484 ALAIMLVGYRLIAYIALM 501 (508)
Q Consensus 484 il~~~~~~~~~~~~~~l~ 501 (508)
+++++.+++..++....|
T Consensus 212 ~l~~~~~v~~~la~~~~~ 229 (232)
T TIGR00025 212 VVLAFWVALAALAAIRLR 229 (232)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 888888887777766554
|
This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance. |
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.8e-10 Score=127.77 Aligned_cols=77 Identities=25% Similarity=0.313 Sum_probs=66.7
Q ss_pred CCCccCHHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cC-C-CEEEEEecCcchHHHhh
Q 010509 184 LTRGVSGGERKRVSI------GQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLA-NG-G-RTIVMTIHQPSNMLYYM 254 (508)
Q Consensus 184 ~~~~LSGGerqRv~I------a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~-~~-g-~tii~s~H~~~~~~~~~ 254 (508)
.+..||||||+|++| |++++.+|++++|||||+|||+.....+.+.++... +. | .++|++||++. ....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 356899999999975 589999999999999999999999999999998643 33 3 48999999985 3478
Q ss_pred ccEEEEEe
Q 010509 255 FHKVLLLS 262 (508)
Q Consensus 255 ~D~v~lL~ 262 (508)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999998
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.1e-10 Score=134.55 Aligned_cols=69 Identities=19% Similarity=0.373 Sum_probs=61.5
Q ss_pred CccCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-----CCCEEEEEecCcchHHHhh
Q 010509 186 RGVSGGERK------RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-----GGRTIVMTIHQPSNMLYYM 254 (508)
Q Consensus 186 ~~LSGGerq------Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-----~g~tii~s~H~~~~~~~~~ 254 (508)
..||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|.++.. .|.+||++||++. .+..+
T Consensus 1198 ~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~-~~~~~ 1276 (1311)
T TIGR00606 1198 GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED-FVELL 1276 (1311)
T ss_pred CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH-HHHHH
Confidence 479999999 99999999999999999999999999999999999988742 3789999999986 45555
Q ss_pred c
Q 010509 255 F 255 (508)
Q Consensus 255 ~ 255 (508)
+
T Consensus 1277 ~ 1277 (1311)
T TIGR00606 1277 G 1277 (1311)
T ss_pred h
Confidence 3
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.2e-09 Score=104.16 Aligned_cols=161 Identities=16% Similarity=0.102 Sum_probs=98.1
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHhc-CCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHH
Q 010509 66 ILKGI-TGMVKPGEMLAMLGPSGCGKTTLLTALGG-RLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 66 iL~~v-s~~v~~Ge~~ailG~nGsGKSTLL~~L~g-~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
-|+.+ .+=+++|+++.|.|++|+|||||...++- ... + .+.+.|+..+. +..+.+.
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~--------~--------g~~~~y~~~e~------~~~~~~~ 70 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK--------Q--------GKKVYVITTEN------TSKSYLK 70 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh--------C--------CCEEEEEEcCC------CHHHHHH
Confidence 35553 56799999999999999999999988852 111 1 12345555432 2333322
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhh--CCCEEEEeCCCCC---C
Q 010509 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILI--NPSLLFLDEPTSG---L 218 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~--~P~illLDEPtsg---L 218 (508)
-...+. ++-. +.+. -|.....+..+. .....|.++++.+.....++. +|+++++||||+. .
T Consensus 71 ~~~~~g----~~~~-------~~~~-~g~l~i~~~~~~--~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~ 136 (234)
T PRK06067 71 QMESVK----IDIS-------DFFL-WGYLRIFPLNTE--GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYA 136 (234)
T ss_pred HHHHCC----CChh-------HHHh-CCCceEEecccc--ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcC
Confidence 221111 1100 0000 011111111111 012356788999999999997 9999999999964 4
Q ss_pred CHHHHHHHHHHHHHHHcCCCEEEEEecCcch------HHHhhccEEEEEe
Q 010509 219 DSTIAQQILSILLKLANGGRTIVMTIHQPSN------MLYYMFHKVLLLS 262 (508)
Q Consensus 219 D~~~~~~i~~~L~~l~~~g~tii~s~H~~~~------~~~~~~D~v~lL~ 262 (508)
|.....++++.++.++++|.|+++++|+... .+..++|-++.|+
T Consensus 137 ~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~ 186 (234)
T PRK06067 137 EEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLR 186 (234)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEE
Confidence 5555556666677777779999999998653 1456777777776
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-09 Score=103.76 Aligned_cols=57 Identities=16% Similarity=0.282 Sum_probs=42.5
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
+++++|..+|+++++|||. |..+...+ .+.+..|..++.|+|.++. ....||++.|.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~----l~~a~~G~~v~~t~Ha~~~--~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLA----LTAAETGHLVMSTLHTNSA--AKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHH----HHHHHcCCEEEEEecCCcH--HHHHhHHHhhc
Confidence 4778899999999999996 55543333 3445679999999999863 35678887664
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.6e-10 Score=131.42 Aligned_cols=76 Identities=14% Similarity=0.232 Sum_probs=67.0
Q ss_pred CCCccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEE
Q 010509 184 LTRGVSGGERKRVSIGQEIL----INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVL 259 (508)
Q Consensus 184 ~~~~LSGGerqRv~Ia~aL~----~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~ 259 (508)
.+..||||||+|++||++++ .+|++++|||||++||+.+...+.+.|+++++ +.++|++||++.. ...||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~--~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGT--MEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhH--HHHhhhHe
Confidence 45689999999999999985 56799999999999999999999999999875 4789999999863 46799998
Q ss_pred EEe
Q 010509 260 LLS 262 (508)
Q Consensus 260 lL~ 262 (508)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 765
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-09 Score=115.67 Aligned_cols=151 Identities=19% Similarity=0.246 Sum_probs=96.5
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHH
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVF 144 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~ 144 (508)
.++++.+..+++|++++++||||+||||++..|++.+....|. +.++++.+|. ...++.|+|.+
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-------------~kV~LI~~Dt---~RigA~EQLr~ 307 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-------------SKVALLTTDS---YRIGGHEQLRI 307 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-------------CeEEEEeCCc---cchhHHHHHHH
Confidence 3567777788899999999999999999999999976444442 2478888875 35789999998
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHH-HHHHHHHHhhCC-----CEEEEeCCCCCC
Q 010509 145 TALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK-RVSIGQEILINP-----SLLFLDEPTSGL 218 (508)
Q Consensus 145 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq-Rv~Ia~aL~~~P-----~illLDEPtsgL 218 (508)
.+..... +........+...+..++.+....++. +...+++. .+.-..+++.++ .+|+||.++.+
T Consensus 308 ~AeilGV---pv~~~~~~~Dl~~aL~~L~d~d~VLID-----TaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~- 378 (484)
T PRK06995 308 YGKILGV---PVHAVKDAADLRLALSELRNKHIVLID-----TIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG- 378 (484)
T ss_pred HHHHhCC---CeeccCCchhHHHHHHhccCCCeEEeC-----CCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH-
Confidence 7765421 111112223344556677776666664 32222322 234444555554 68999999887
Q ss_pred CHHHHHHHHHHHHHHHcCCCEEEEEec
Q 010509 219 DSTIAQQILSILLKLANGGRTIVMTIH 245 (508)
Q Consensus 219 D~~~~~~i~~~L~~l~~~g~tii~s~H 245 (508)
..+.+.++.....+.+=++.|+
T Consensus 379 -----~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 379 -----DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred -----HHHHHHHHHhccCCCCEEEEeC
Confidence 3345555555555555444444
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.4e-10 Score=118.33 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=46.8
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCccc-EEEECCEeCC
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRING-RITYNGKPFS 116 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G-~I~~~G~~~~ 116 (508)
+.+|++||+++++||+++|+|||||||||||+ +|+..|++| +|.++|+++.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECC
Confidence 46899999999999999999999999999999 777777777 7999999874
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.7e-09 Score=102.82 Aligned_cols=136 Identities=22% Similarity=0.396 Sum_probs=86.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECC-EeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNG-KPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFT 155 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G-~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~ 155 (508)
|++..|.||+|+|||||.-.++=-. .+|.=.+.+ .... ....+-|+.=|+ +
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~v--a~G~~~~g~~~~~~--~~~~Vlyi~~Ed------------------------~ 52 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAM--ALGKNLFGGGLKVT--EPGRVVYLSAED------------------------P 52 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHH--hcCccccCCccccC--CCceEEEEECCC------------------------C
Confidence 6788999999999999988876322 122111111 1111 122355554321 2
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHH----------------HHhhCCCEEEEeCCCC---
Q 010509 156 EKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQ----------------EILINPSLLFLDEPTS--- 216 (508)
Q Consensus 156 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~----------------aL~~~P~illLDEPts--- 216 (508)
.++..+|+..+...+++.+..++.. ..+|+.|++.+++ ....+|+++++| |++
T Consensus 53 ~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~ 124 (239)
T cd01125 53 REEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFH 124 (239)
T ss_pred HHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhC
Confidence 2334456666666666655444332 2245555555443 335799999999 765
Q ss_pred ---CCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcc
Q 010509 217 ---GLDSTIAQQILSILLKLANG-GRTIVMTIHQPS 248 (508)
Q Consensus 217 ---gLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~ 248 (508)
.+|+.....+++.|++++++ |.||++++|...
T Consensus 125 ~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 125 GVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 47999999999999999864 999999999863
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.8e-08 Score=84.27 Aligned_cols=117 Identities=32% Similarity=0.434 Sum_probs=77.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCCCCcc-cEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRLGRIN-GRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSF 154 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~-G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~ 154 (508)
++..+.|.||+|+||||+++.|+....... +-+.++........ .....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~------------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEV-----------------LDQLL------------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccC-----------------HHHHH-------------
Confidence 467899999999999999999999875443 44444443321100 00000
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH------
Q 010509 155 TEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILS------ 228 (508)
Q Consensus 155 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~------ 228 (508)
.... ........+++..+..++++--.+|+++++||+..-.+.........
T Consensus 51 ------------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~ 107 (148)
T smart00382 51 ------------------LIIV-----GGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRL 107 (148)
T ss_pred ------------------hhhh-----hccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHH
Confidence 0000 00112567777888888877777799999999999999988887765
Q ss_pred HHHHHHcCCCEEEEEec
Q 010509 229 ILLKLANGGRTIVMTIH 245 (508)
Q Consensus 229 ~L~~l~~~g~tii~s~H 245 (508)
........+..+|+++|
T Consensus 108 ~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 108 LLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHhcCCCEEEEEeC
Confidence 22333345788999998
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.8e-09 Score=125.64 Aligned_cols=77 Identities=13% Similarity=0.186 Sum_probs=68.1
Q ss_pred CCCccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEE
Q 010509 184 LTRGVSGGERKRVSIGQEILI----NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVL 259 (508)
Q Consensus 184 ~~~~LSGGerqRv~Ia~aL~~----~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~ 259 (508)
.+..||||||++++||.+++. +|++++||||+++||+.....+.+.|+++++ +.++|++||++. ....||+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeE
Confidence 356899999999999999985 6799999999999999999999999999865 478999999974 558999998
Q ss_pred EEeC
Q 010509 260 LLSE 263 (508)
Q Consensus 260 lL~~ 263 (508)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 8763
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.1e-09 Score=121.59 Aligned_cols=78 Identities=28% Similarity=0.371 Sum_probs=67.2
Q ss_pred CCccCHHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCC-EEEEEecCcchHH
Q 010509 185 TRGVSGGERK------RVSIGQEILIN-----P-SLLFLDEPTSGLDSTIAQQILSILLKLANGGR-TIVMTIHQPSNML 251 (508)
Q Consensus 185 ~~~LSGGerq------Rv~Ia~aL~~~-----P-~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~-tii~s~H~~~~~~ 251 (508)
+..||||||+ |+++|++++.+ | +++++||||++||+.....+.+.|+++.+.|. +||++||++.. +
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~-~ 857 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDEL-V 857 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHH-H
Confidence 5689999999 89999998864 3 67999999999999999999999999986664 89999999853 3
Q ss_pred HhhccEEEEEeCC
Q 010509 252 YYMFHKVLLLSEG 264 (508)
Q Consensus 252 ~~~~D~v~lL~~G 264 (508)
..+|+++.|...
T Consensus 858 -~~ad~~~~~~~~ 869 (880)
T PRK02224 858 -GAADDLVRVEKD 869 (880)
T ss_pred -HhcCeeEEeecC
Confidence 679999999743
|
|
| >TIGR01291 nodJ ABC-2 type transporter, NodJ family | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-07 Score=93.63 Aligned_cols=159 Identities=11% Similarity=0.054 Sum_probs=116.6
Q ss_pred hhhhhcCCCCc--------ChHHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 010509 318 MLEKEIPSGMY--------RLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLFSVLVSQGLGLA 389 (508)
Q Consensus 318 v~~rE~~~~~Y--------~~~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~ 389 (508)
.+.|||.+|.+ ++..+.++|++.+.-..++..++...+.+++ |..+. ...+..+...++..++..++|++
T Consensus 81 ~~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~-g~~~~-~~~l~~~~~~ll~~l~~~~lg~~ 158 (253)
T TIGR01291 81 TFARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTATL-GYIEW-WSLIYILPVIALTGLAFASLSML 158 (253)
T ss_pred HHHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566655553 5677899999988776666666555544433 44433 33444445556677777899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhhccccC--CchhhHHHhhhhCHHHHHHHHHHHHHhCCCCcccCCCCCCccccCCc
Q 010509 390 IGAMVMEQKSATILGSIIMQLFVLAGGYYVQ--NVPSFIAWIEYLSIGHHTYKLLLGSQYNYNETYPCGDSGGLCLVGEH 467 (508)
Q Consensus 390 i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~--~ip~~~~W~~yiS~~~y~~eal~~nef~~~~~~~c~~~~~~c~~~~~ 467 (508)
+|++.++.+.+..+.+++..|++..||.+.| .+|.|++|+.+++|+.|+.|++-..-+++. .
T Consensus 159 ~a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g~~--~-------------- 222 (253)
T TIGR01291 159 VAALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLGGP--G-------------- 222 (253)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhCCC--c--------------
Confidence 9999999999999999999999999999998 999999999999999999999655533321 0
Q ss_pred ccceeeCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 010509 468 PTIKKVGLHRKYYSVIALAIMLVGYRLIAYIALMR 502 (508)
Q Consensus 468 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~ 502 (508)
.+.|.++++++++.+++..++....|+
T Consensus 223 --------~~~~~~~~~l~~~~vv~~~la~~~fr~ 249 (253)
T TIGR01291 223 --------TQVGLHLGALCLYAVVPFFISAALLRR 249 (253)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 023456778888888777776665554
|
Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins. |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.9e-10 Score=124.73 Aligned_cols=166 Identities=20% Similarity=0.230 Sum_probs=103.8
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHH--hcCCCCcccEEEECCEeCChhc---cccEEEEecCCCCCCCCCHH
Q 010509 66 ILKGI-TGMVKPGEMLAMLGPSGCGKTTLLTAL--GGRLGRINGRITYNGKPFSNQM---TRNTGFVTQEDVLSPYLTVT 139 (508)
Q Consensus 66 iL~~v-s~~v~~Ge~~ailG~nGsGKSTLL~~L--~g~~~~~~G~I~~~G~~~~~~~---~~~i~yv~Q~~~l~~~lTv~ 139 (508)
-|+.+ .+=+.+|..+.|.|++|||||||..-. .|....-+.-+++.......++ .+..|+-.|+...-..+.+
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g~l~~- 87 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEGKLFI- 87 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcCceEE-
Confidence 35664 567899999999999999999998866 3433323445666554332222 1234443332110000000
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHH--HHHhhCCCEEEEeCCCCC
Q 010509 140 ETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIG--QEILINPSLLFLDEPTSG 217 (508)
Q Consensus 140 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia--~aL~~~P~illLDEPtsg 217 (508)
.. .... ...+.+++.+++.+..++.. +.+|+|++|||.|+ .+|..+|+..
T Consensus 88 --------~~----~~~~---~~~~~~~~~~~l~~~l~~i~-----~~ls~g~~qRVvIDSl~aL~~~~~~~-------- 139 (484)
T TIGR02655 88 --------LD----ASPD---PEGQDVVGGFDLSALIERIN-----YAIRKYKAKRVSIDSVTAVFQQYDAV-------- 139 (484)
T ss_pred --------Ee----cCch---hccccccccCCHHHHHHHHH-----HHHHHhCCcEEEEeehhHhhhhcCch--------
Confidence 00 0000 00112344556666555554 38999999999999 6666665543
Q ss_pred CCHHHHHHHHHHHHHHHcCCCEEEEEecCcchH--------HHhhccEEEEEe
Q 010509 218 LDSTIAQQILSILLKLANGGRTIVMTIHQPSNM--------LYYMFHKVLLLS 262 (508)
Q Consensus 218 LD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~--------~~~~~D~v~lL~ 262 (508)
...+.++.++++.+++.|.|+|+++|++... ...++|.|+.|+
T Consensus 140 --~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 --SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred --HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 4677889999999988899999999987531 256889999886
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.1e-08 Score=110.45 Aligned_cols=71 Identities=15% Similarity=0.175 Sum_probs=55.4
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHh-hccEEEEEeCCeEEE
Q 010509 198 IGQEILINPSLLFLDEPTSGL-DSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYY-MFHKVLLLSEGYPLY 268 (508)
Q Consensus 198 Ia~aL~~~P~illLDEPtsgL-D~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~-~~D~v~lL~~G~iv~ 268 (508)
|++++..+|+++++|||+.+| |+..+..+.+.++++++.|.+++++||+++..... .++.++-..+.++..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~s~i~~~ilen~~t~I~L 752 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAANSGILDVIVESTATKIFL 752 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhCchHHHHHHcCCcceec
Confidence 577788999999999999999 79999999999999988899999999999753321 234333334445443
|
|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.7e-08 Score=100.97 Aligned_cols=123 Identities=20% Similarity=0.364 Sum_probs=76.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCCC-CcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLG-RINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPN 152 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~ 152 (508)
.+++.++.|.||+||||||+|++|.+.+. +.+|.|...+.++........+.+.|..
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~e---------------------- 176 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQRE---------------------- 176 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccc----------------------
Confidence 35788999999999999999999998654 3456665543332110000001111100
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 010509 153 SFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLK 232 (508)
Q Consensus 153 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~ 232 (508)
.|.. ..+ -.-+++++|-.+|+++++||+. |+.++...++
T Consensus 177 -----------------vg~~-------------~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~---- 215 (343)
T TIGR01420 177 -----------------VGLD-------------TLS----FANALRAALREDPDVILIGEMR---DLETVELALT---- 215 (343)
T ss_pred -----------------cCCC-------------CcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH----
Confidence 0000 001 1123566888999999999997 8888765444
Q ss_pred HHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 233 LANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 233 l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
.+..|.+++.|+|-.+. ....+|++-|
T Consensus 216 aa~tGh~v~~T~Ha~~~--~~~~~Rl~~~ 242 (343)
T TIGR01420 216 AAETGHLVFGTLHTNSA--AQTIERIIDV 242 (343)
T ss_pred HHHcCCcEEEEEcCCCH--HHHHHHHHHh
Confidence 35679999999998653 3456776544
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.4e-08 Score=104.52 Aligned_cols=175 Identities=19% Similarity=0.214 Sum_probs=110.7
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh------------hccccEEEEecCC
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN------------QMTRNTGFVTQED 130 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~------------~~~~~i~yv~Q~~ 130 (508)
+..+++++ +.+.+||.++|+|+||+|||||+++|++...++.|.+...|++-.+ .+++.+.++.+-+
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d 228 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSD 228 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCC
Confidence 35789999 9999999999999999999999999999998888887776654321 1223344444433
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH-HHHHHHHHHHHHhhCCCEE
Q 010509 131 VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG-GERKRVSIGQEILINPSLL 209 (508)
Q Consensus 131 ~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG-GerqRv~Ia~aL~~~P~il 209 (508)
. ++.+-..-+ ......+| .+...|-. . ++- .-+++- -|-+| ++. +
T Consensus 229 ~-----~p~~r~~~~-----------~~a~t~AE-~frd~G~~-V---ll~---~DslTr~A~A~R-----Eis-----l 274 (440)
T TIGR01026 229 Q-----SPLLRLKGA-----------YVATAIAE-YFRDQGKD-V---LLL---MDSVTRFAMAQR-----EIG-----L 274 (440)
T ss_pred C-----CHHHHHHHH-----------HHHHHHHH-HHHHCCCC-E---EEE---EeChHHHHHHHH-----HHH-----H
Confidence 2 111111100 00001112 22222321 1 100 001111 11111 111 3
Q ss_pred EEeCC--CCCCCHHHHHHHHHHHHHHHcCCC-------EEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 210 FLDEP--TSGLDSTIAQQILSILLKLANGGR-------TIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 210 lLDEP--tsgLD~~~~~~i~~~L~~l~~~g~-------tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
.+.|| +.|+|+.....+.+++.+....+. ||++.+||..+ ..+|++.-+.+|+++.+.+..+.
T Consensus 275 ~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~d---pi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 275 AAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNE---PIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred hcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCc---chhhhhccccceEEEEecchhhC
Confidence 35675 459999999999999999876667 88889999754 46899999999999999886643
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.3e-08 Score=93.00 Aligned_cols=83 Identities=20% Similarity=0.099 Sum_probs=62.3
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-hccccEEEEecCC--CCCCCCCHHHHH
Q 010509 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN-QMTRNTGFVTQED--VLSPYLTVTETM 142 (508)
Q Consensus 66 iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~-~~~~~i~yv~Q~~--~l~~~lTv~E~l 142 (508)
..+=+.+.+++|+.++|+||||||||||+++|+|++++..|.|.+.+..-.. ..+..++++.|.+ ...+..|..+.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLL 93 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHH
Confidence 3444556789999999999999999999999999999999999997753211 2234566666543 346678888888
Q ss_pred HHHHHh
Q 010509 143 VFTALL 148 (508)
Q Consensus 143 ~~~~~l 148 (508)
....+.
T Consensus 94 ~~~lR~ 99 (186)
T cd01130 94 RSALRM 99 (186)
T ss_pred HHHhcc
Confidence 776543
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.69 E-value=2e-08 Score=106.55 Aligned_cols=173 Identities=17% Similarity=0.156 Sum_probs=108.0
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcc---cEEEECCEeCCh----------hccccEEEEecC
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN---GRITYNGKPFSN----------QMTRNTGFVTQE 129 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~---G~I~~~G~~~~~----------~~~~~i~yv~Q~ 129 (508)
+..+++++ +.+.+||.++|+|+||+|||||+++|+|..+++. |.|-.+|+++.. ..+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 35799999 9999999999999999999999999999887665 344444444321 124479999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEE
Q 010509 130 DVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLL 209 (508)
Q Consensus 130 ~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~il 209 (508)
+..+..+++.|++.+.+......+ +.|--+++ .+...++.. |+ ++ +
T Consensus 221 ~s~~~rl~a~e~a~~iAEyfr~~g-------~~Vll~~D--sltr~a~A~------RE--------is-----------l 266 (434)
T PRK07196 221 ESPLMRIKATELCHAIATYYRDKG-------HDVLLLVD--SLTRYAMAQ------RE--------IA-----------L 266 (434)
T ss_pred CChhhhHHHHHHHHHHHHHhhhcc-------CCEEEeec--chhHHHhhh------hH--------HH-----------H
Confidence 999999999999987765421100 00000000 011111000 01 11 1
Q ss_pred EEeCC--CCCCCHHHHHHHHHHHHHHHc---CC-CEEEEEecCcchHHH-hhccEEEEEeCCeEEEEc
Q 010509 210 FLDEP--TSGLDSTIAQQILSILLKLAN---GG-RTIVMTIHQPSNMLY-YMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 210 lLDEP--tsgLD~~~~~~i~~~L~~l~~---~g-~tii~s~H~~~~~~~-~~~D~v~lL~~G~iv~~G 270 (508)
.+.|| +.|-.+..-..+-+++.+.-+ .| .|.+.+..-+..++. -.+|.+.-+-||+++.+-
T Consensus 267 ~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLsr 334 (434)
T PRK07196 267 SLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLSR 334 (434)
T ss_pred hcCCCCcccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEcH
Confidence 22354 236777776777777777532 22 566766654433322 356777778899998753
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.9e-09 Score=100.91 Aligned_cols=48 Identities=23% Similarity=0.236 Sum_probs=34.2
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHhc-CCCCcccEEEECCE
Q 010509 66 ILKGI-TGMVKPGEMLAMLGPSGCGKTTLLTALGG-RLGRINGRITYNGK 113 (508)
Q Consensus 66 iL~~v-s~~v~~Ge~~ailG~nGsGKSTLL~~L~g-~~~~~~G~I~~~G~ 113 (508)
-|+++ .+-+++|++++|.||+|+|||||...++. ...+.++.+.+...
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 35553 56799999999999999999999886652 22233445666554
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.5e-08 Score=103.30 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=55.5
Q ss_pred CccCHHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcc
Q 010509 186 RGVSGGERKRVSIGQEILI---------NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPS 248 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~---------~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~ 248 (508)
..+|.||+|++.||..|+. +|+|++||||+++||+..+..+++.|++. |.++++|+|++.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 3589999999999999999 99999999999999999999999999764 679999999875
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.1e-07 Score=101.18 Aligned_cols=83 Identities=18% Similarity=0.263 Sum_probs=66.5
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECC---
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNG--- 112 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G--- 112 (508)
+..++.++++..+.. +..+++.++ .+.+||.++|+||||+|||||+++|+++..++.|.|.+.|
T Consensus 137 p~~~~r~~v~~~l~T------------Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGerg 203 (450)
T PRK06002 137 PPAMTRARVETGLRT------------GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERG 203 (450)
T ss_pred CCCeEeecceEEcCC------------CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCC
Confidence 445777888877642 356888886 8999999999999999999999999999999999998865
Q ss_pred EeCCh--------hccccEEEEecCCC
Q 010509 113 KPFSN--------QMTRNTGFVTQEDV 131 (508)
Q Consensus 113 ~~~~~--------~~~~~i~yv~Q~~~ 131 (508)
+++.. ..++.+++|+|.+.
T Consensus 204 rev~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 204 REVREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred ccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 44421 12457999999765
|
|
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.2e-08 Score=100.01 Aligned_cols=76 Identities=21% Similarity=0.230 Sum_probs=63.5
Q ss_pred ccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccE
Q 010509 187 GVSGGERKRVSIGQEIL---------INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHK 257 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~---------~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~ 257 (508)
-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|.+. ..++|.+|+.+ ..+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~~-----~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEAP-----PGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCCC-----CCCce
Confidence 47999999999999998 899999999999999999999999888654 24666666544 45899
Q ss_pred EEEEeCCeEEEEc
Q 010509 258 VLLLSEGYPLYSG 270 (508)
Q Consensus 258 v~lL~~G~iv~~G 270 (508)
++.+.+|++.-..
T Consensus 335 ~~~~~~~~~~~~~ 347 (349)
T PRK14079 335 TLRIEAGVFTPEA 347 (349)
T ss_pred EEEEeccEecCCC
Confidence 9999999875443
|
|
| >TIGR01248 drrC daunorubicin resistance protein C | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.6e-06 Score=79.76 Aligned_cols=126 Identities=9% Similarity=0.006 Sum_probs=89.7
Q ss_pred hhhhhhhhcCCCCcChHHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010509 315 EQKMLEKEIPSGMYRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTA--SNFFETLFVLLFSVLVSQGLGLAIGA 392 (508)
Q Consensus 315 er~v~~rE~~~~~Y~~~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~--~~f~~f~~~~~l~~~~~~s~~~~i~~ 392 (508)
|+..+.|-+..-. +.+.++++|++...-..++..++..++.+.+ |.+... ...+.+++...+.......++..++.
T Consensus 17 ~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~~-g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~a~ 94 (152)
T TIGR01248 17 EIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALAL-GFRFRNGVAAALLFLLIPSIFGIAFAALVMAMAL 94 (152)
T ss_pred HhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554444 6788999999999988888887777777544 877653 22333444444445555566677765
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhhccccC--CchhhHHHhhhhCHHHHHHHHHH
Q 010509 393 MVMEQKSATILGSIIMQLFVLAGGYYVQ--NVPSFIAWIEYLSIGHHTYKLLL 443 (508)
Q Consensus 393 ~~~~~~~a~~~~~~~~~~~~l~~Gf~i~--~ip~~~~W~~yiS~~~y~~eal~ 443 (508)
..++.+..+ ...++..|++..+|.+.| ++|.|++|+.+++|+.|+.|++=
T Consensus 95 ~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 95 RKEGRFAME-ALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 556655433 457777888888888888 99999999999999999999874
|
The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters. |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.4e-08 Score=91.99 Aligned_cols=112 Identities=16% Similarity=0.211 Sum_probs=66.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHH-hcCCCCCCHH
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTAL-LQLPNSFTEK 157 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~-l~~~~~~~~~ 157 (508)
+++|.||||||||||.++|++.+ ..|. +.++++|+.. ..++..+....... ...|...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~---------------~~v~~~D~~~-~~~~~~~~~~~~~~~~~~~~~~--- 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPK---------------VVIISQDSYY-KDLSHEELEERKNNNYDHPDAF--- 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCC---------------eEEEEecccc-cccccccHHHhccCCCCCCCcc---
Confidence 57999999999999999999986 2222 3344444332 22333332221111 1111111
Q ss_pred HHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 010509 158 EKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDS 220 (508)
Q Consensus 158 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~ 220 (508)
..+...+.++.+...+..+... ...|.|++++..+ .+.+|+++++|+|..+.++
T Consensus 60 -~~~~~~~~l~~l~~~~~~~~p~-----~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 60 -DFDLLISHLQDLKNGKSVEIPV-----YDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred -cHHHHHHHHHHHHCCCCEeccc-----cccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 1233445666665544333333 3678888776555 5678999999999999986
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.5e-07 Score=107.81 Aligned_cols=78 Identities=29% Similarity=0.373 Sum_probs=69.5
Q ss_pred CCCccCHHHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhc
Q 010509 184 LTRGVSGGERKRVSIGQEIL------IN--PSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMF 255 (508)
Q Consensus 184 ~~~~LSGGerqRv~Ia~aL~------~~--P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~ 255 (508)
.+..|||||+-.++||.+|+ .+ -+++||||||..||+.+...++++|..+...+.+|+++||+. ++...+
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~~ 889 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKERA 889 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHhC
Confidence 56799999999998888775 35 599999999999999999999999999998899999999996 466789
Q ss_pred cEEEEEeC
Q 010509 256 HKVLLLSE 263 (508)
Q Consensus 256 D~v~lL~~ 263 (508)
|.++.++.
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 99998874
|
|
| >PRK15066 inner membrane transport permease; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.1e-06 Score=82.71 Aligned_cols=153 Identities=12% Similarity=0.142 Sum_probs=109.8
Q ss_pred cChHHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010509 328 YRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLFSVLVSQGLGLAIGAMVMEQKSATILGSII 407 (508)
Q Consensus 328 Y~~~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~ 407 (508)
-+...+.+++++...-..++..++...+.+...|.+.. ....+....++...+....|+++|.+.++.+.+..+.+++
T Consensus 101 ~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~~a~~~~~~~~~~~i~~~~ 178 (257)
T PRK15066 101 VPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLINAVFAKSFDDISIIPTFV 178 (257)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 46777899999987766666655555555444466543 2233333333333434445888998889988888899999
Q ss_pred HHHHHHhhccccC--CchhhHHHhhhhCHHHHHHHHHHHHHhCCCCcccCCCCCCccccCCcccceeeCCCcchhHHHHH
Q 010509 408 MQLFVLAGGYYVQ--NVPSFIAWIEYLSIGHHTYKLLLGSQYNYNETYPCGDSGGLCLVGEHPTIKKVGLHRKYYSVIAL 485 (508)
Q Consensus 408 ~~~~~l~~Gf~i~--~ip~~~~W~~yiS~~~y~~eal~~nef~~~~~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~~~il 485 (508)
+.|++..||.+.| ++|.|++|+.+++|+.|..|++=..-+++. ....|.+++++
T Consensus 179 ~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~g~~------------------------~~~~~~~l~~l 234 (257)
T PRK15066 179 LTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFLGIS------------------------DVPLWLAFAVL 234 (257)
T ss_pred HHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHcCCC------------------------CccHHHHHHHH
Confidence 9999999999988 999999999999999999998764433210 01246788889
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q 010509 486 AIMLVGYRLIAYIALMRIGAT 506 (508)
Q Consensus 486 ~~~~~~~~~~~~~~l~~~~~~ 506 (508)
+++.+++..++....|+.++-
T Consensus 235 ~~~~~v~~~la~~~~~r~~~~ 255 (257)
T PRK15066 235 LVFIVVLYLLAWYLLERGRGL 255 (257)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 999998888888887765543
|
|
| >TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.2e-06 Score=82.37 Aligned_cols=147 Identities=14% Similarity=0.206 Sum_probs=107.3
Q ss_pred cChHHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010509 328 YRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLFSVLVSQGLGLAIGAMVMEQKSATILGSII 407 (508)
Q Consensus 328 Y~~~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~ 407 (508)
.+...+.+++++...-..++..+++..+.+. .|.+.....++......++..++..++|+++|+++++.+.+..+.+++
T Consensus 99 ~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~lgl~la~l~~~~~~~~~i~~~~ 177 (253)
T TIGR03861 99 LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGALGLALSNLIRQLENFAGVMNFV 177 (253)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3677789999999987777766555544443 366655444554455556667778899999999999999888888899
Q ss_pred HHHHHHhhccccC--Cc---hhhHHHhhhhCHHHHHHHHHHHHHhCCCCcccCCCCCCccccCCcccceeeCCCcchhHH
Q 010509 408 MQLFVLAGGYYVQ--NV---PSFIAWIEYLSIGHHTYKLLLGSQYNYNETYPCGDSGGLCLVGEHPTIKKVGLHRKYYSV 482 (508)
Q Consensus 408 ~~~~~l~~Gf~i~--~i---p~~~~W~~yiS~~~y~~eal~~nef~~~~~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~~ 482 (508)
+.+++..+|.+.| .+ |.|++|+.+++|+.|..|++=..-+ +. ..|..+
T Consensus 178 ~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~~~-g~--------------------------~~~~~~ 230 (253)
T TIGR03861 178 IFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFALY-GQ--------------------------LNLPAL 230 (253)
T ss_pred HHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHHHh-CC--------------------------cchhHH
Confidence 9999999999876 44 8999999999999999998754322 21 013455
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 010509 483 IALAIMLVGYRLIAYIALMR 502 (508)
Q Consensus 483 ~il~~~~~~~~~~~~~~l~~ 502 (508)
++++++.+++..++....|+
T Consensus 231 ~~~~~~~~v~~~~~~~~fr~ 250 (253)
T TIGR03861 231 GWTLGATTLFTLLAFWGFDP 250 (253)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 66667777777766665554
|
Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis. |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.4e-07 Score=107.57 Aligned_cols=163 Identities=18% Similarity=0.230 Sum_probs=92.0
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC-CCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHH
Q 010509 69 GITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL-GRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTAL 147 (508)
Q Consensus 69 ~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~-~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~ 147 (508)
=+++..+++++++|.|++|+|||||++++++.. ...+|.+.+++..+.... . .+-.++... .+...
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~-~--~~~~~~~~~-------~~~~~--- 265 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSM-E--IYSSANPDD-------YNMKL--- 265 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccch-h--hcccccccc-------cchhH---
Confidence 356778899999999999999999999998866 456899988753221100 0 000010000 00000
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 010509 148 LQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQIL 227 (508)
Q Consensus 148 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~ 227 (508)
...++.+.++++..++. +. .+ ++.|+| |..++-+|+||+- |.. ..+
T Consensus 266 ---------~l~~~~l~~il~~~~~~------~~-----~~-~~~~~~------L~~krvLLVLDdv----~~~---~~l 311 (1153)
T PLN03210 266 ---------HLQRAFLSEILDKKDIK------IY-----HL-GAMEER------LKHRKVLIFIDDL----DDQ---DVL 311 (1153)
T ss_pred ---------HHHHHHHHHHhCCCCcc------cC-----CH-HHHHHH------HhCCeEEEEEeCC----CCH---HHH
Confidence 01122334444443331 11 22 566666 3355667888983 433 334
Q ss_pred HHHHHHH---cCCCEEEEEecCcchHHHhh-ccEEEEEeCCeEEEEcChhhHHHHHHhcCCC
Q 010509 228 SILLKLA---NGGRTIVMTIHQPSNMLYYM-FHKVLLLSEGYPLYSGEASGAMNYFASIGYC 285 (508)
Q Consensus 228 ~~L~~l~---~~g~tii~s~H~~~~~~~~~-~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~ 285 (508)
+.|+... ..|.+||+|||+... +... +|+++-+. .-+.+++.+.|....|.
T Consensus 312 ~~L~~~~~~~~~GsrIIiTTrd~~v-l~~~~~~~~~~v~------~l~~~ea~~LF~~~Af~ 366 (1153)
T PLN03210 312 DALAGQTQWFGSGSRIIVITKDKHF-LRAHGIDHIYEVC------LPSNELALEMFCRSAFK 366 (1153)
T ss_pred HHHHhhCccCCCCcEEEEEeCcHHH-HHhcCCCeEEEec------CCCHHHHHHHHHHHhcC
Confidence 4444432 358999999999753 3332 56665543 12446788888775543
|
syringae 6; Provisional |
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.4e-06 Score=98.35 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=43.8
Q ss_pred HhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHcCCCEEEEEecCcch
Q 010509 202 ILINPSLLFLDEPTSGLD-STIAQQILSILLKLANGGRTIVMTIHQPSN 249 (508)
Q Consensus 202 L~~~P~illLDEPtsgLD-~~~~~~i~~~L~~l~~~g~tii~s~H~~~~ 249 (508)
+..+|.++++|||...|| +..+..+.+.++++++.|..++++||+++.
T Consensus 639 ~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 687 (800)
T PRK13898 639 LDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED 687 (800)
T ss_pred hcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 456899999999999999 888999999999998889999999999864
|
|
| >COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.2e-06 Score=81.97 Aligned_cols=151 Identities=17% Similarity=0.275 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHH
Q 010509 331 SAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLFSVLVSQGLGLAIG-AMVMEQKSATILGSIIMQ 409 (508)
Q Consensus 331 ~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~-~~~~~~~~a~~~~~~~~~ 409 (508)
..+++++.+...-...+...+...++.+..| ......++.+.....+..+...++|.+++ ....+.+.+..++.++..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 209 (286)
T COG0842 131 LFILLGKIVPYLVVASLIAGLVLLVIAFLLG-VPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLIL 209 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4566777777766666666666666666667 33334555666666777777788888666 366778888899989999
Q ss_pred HHHHhhccccC--CchhhHHHhhhhCHHHHHHHHHHHHHhCCCCcccCCCCCCccccCCcccceeeCCCcchhHHHHHHH
Q 010509 410 LFVLAGGYYVQ--NVPSFIAWIEYLSIGHHTYKLLLGSQYNYNETYPCGDSGGLCLVGEHPTIKKVGLHRKYYSVIALAI 487 (508)
Q Consensus 410 ~~~l~~Gf~i~--~ip~~~~W~~yiS~~~y~~eal~~nef~~~~~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~~~il~~ 487 (508)
++..++|.+.| .+|.|++|+.++.|..|+.+++-.....+. .. ...|.+++++++
T Consensus 210 ~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~-~~----------------------~~~~~~~~~l~~ 266 (286)
T COG0842 210 PLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGW-RN----------------------DGIWISLLILLL 266 (286)
T ss_pred HHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCC-ch----------------------hhHHHHHHHHHH
Confidence 99999999999 999999999999999999999887666542 10 025778899999
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 010509 488 MLVGYRLIAYIALMRIGA 505 (508)
Q Consensus 488 ~~~~~~~~~~~~l~~~~~ 505 (508)
+.+++.+++...+|+.++
T Consensus 267 ~~~v~~~~~~~~~~~~~~ 284 (286)
T COG0842 267 FAVVFLLLGLLLLRRRRK 284 (286)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999999999999887554
|
|
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=4e-07 Score=105.04 Aligned_cols=138 Identities=20% Similarity=0.229 Sum_probs=86.4
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHH
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
..+=+|+++. +.+.++.|.|||++||||+||.++-..- +.+.=+|||-+..- +.+.+.
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~i----------------lAq~G~~VPa~~a~---i~~~d~-- 652 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVL----------------LAQIGSFVPAESAR---IGIVDR-- 652 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHH----------------HHhcCCceeccceE---ecccCe--
Confidence 4577788888 7788999999999999999999875310 01111233322111 111111
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHh--hCCCEEEEeCC---CCCC
Q 010509 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEIL--INPSLLFLDEP---TSGL 218 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~--~~P~illLDEP---tsgL 218 (508)
++..+|-. |.. .++.|.-+.....++..|- ++++++++||| |+.+
T Consensus 653 ----------------------I~triga~---d~i-----~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~ 702 (854)
T PRK05399 653 ----------------------IFTRIGAS---DDL-----ASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTY 702 (854)
T ss_pred ----------------------eeeccCcc---ccc-----ccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcc
Confidence 11111111 111 1367777777777776664 48999999999 8889
Q ss_pred CHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccE
Q 010509 219 DSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHK 257 (508)
Q Consensus 219 D~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~ 257 (508)
|..+ ....+++.+.+. |.+++++||.. ++.+++++
T Consensus 703 dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 703 DGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred hhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 9444 455566666655 68999999994 45666664
|
|
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-07 Score=89.55 Aligned_cols=65 Identities=17% Similarity=0.339 Sum_probs=47.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChh--cc-ccEEEEecCCCCCCCCCHHHHHHH
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ--MT-RNTGFVTQEDVLSPYLTVTETMVF 144 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~--~~-~~i~yv~Q~~~l~~~lTv~E~l~~ 144 (508)
+||+++|+|+||||||||+++|++++++ +.++|.++... .+ ...++.+|+....+..++.++..+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999998866 57888776431 22 235666666555555555555554
|
|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.40 E-value=4e-07 Score=109.66 Aligned_cols=60 Identities=28% Similarity=0.411 Sum_probs=53.4
Q ss_pred CCccCHHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCc
Q 010509 185 TRGVSGGERKRVS----IGQE--------ILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQP 247 (508)
Q Consensus 185 ~~~LSGGerqRv~----Ia~a--------L~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~ 247 (508)
..+||||||||++ +|++ +..+|++++|||||+|||+.+...++++++++ |.++|+++|..
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 4689999999996 5644 55899999999999999999999999999988 78999999874
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >PRK13873 conjugal transfer ATPase TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.9e-05 Score=91.13 Aligned_cols=47 Identities=26% Similarity=0.292 Sum_probs=42.7
Q ss_pred hhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHcCCCEEEEEecCcch
Q 010509 203 LINPSLLFLDEPTSGLD-STIAQQILSILLKLANGGRTIVMTIHQPSN 249 (508)
Q Consensus 203 ~~~P~illLDEPtsgLD-~~~~~~i~~~L~~l~~~g~tii~s~H~~~~ 249 (508)
-.+|+++++|||+.+|| +..+..+.+.++.+++.|.+++++||++..
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 680 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLAD 680 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence 45899999999999999 788999999999998889999999999863
|
|
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.5e-07 Score=87.29 Aligned_cols=74 Identities=19% Similarity=0.303 Sum_probs=53.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCCCcccE----EEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhc
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLGRINGR----ITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQ 149 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~----I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~ 149 (508)
.+..+++|.||||||||||.+.|++++++.+|. |.+++........+..+++++.+ .++.+++.+.+.+...++
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~l~ 108 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKG-APETFDVAGLAALLRRLR 108 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccC-CCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999999988898 55555433333334467776643 345677777776655544
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.9e-06 Score=83.23 Aligned_cols=38 Identities=29% Similarity=0.460 Sum_probs=33.7
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.+.|+++.+-+++|+++.|.|++|+|||||+..++...
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45788988899999999999999999999999887643
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.8e-06 Score=91.98 Aligned_cols=108 Identities=16% Similarity=0.200 Sum_probs=71.0
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-CcccEEEECC---EeCCh----hc---cccEEEE-----e
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-RINGRITYNG---KPFSN----QM---TRNTGFV-----T 127 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-~~~G~I~~~G---~~~~~----~~---~~~i~yv-----~ 127 (508)
..+++++ +.+.+||.++|+|+||+|||||+++|+|..+ ...|.|.+.| +++.+ .+ ....+++ +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 5689998 9999999999999999999999999999874 3446777755 44421 11 1234555 7
Q ss_pred cCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 010509 128 QEDV--LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS 173 (508)
Q Consensus 128 Q~~~--l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~ 173 (508)
|++. +.|.+ +...+....+.+........+...++.+++++++|.
T Consensus 231 q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 231 QSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 8753 34433 444443333222111113345667888899999884
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.2e-06 Score=95.72 Aligned_cols=110 Identities=24% Similarity=0.369 Sum_probs=72.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCCCCcc--------cEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHH
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRLGRIN--------GRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTAL 147 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~--------G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~ 147 (508)
..+.++|.||||+|||||.+++.+..++.. +-|.++|..+....+. + ++-.+.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~----------------i-~~~llg-- 234 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE----------------V-TNPLLG-- 234 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH----------------H-hHHhcC--
Confidence 345799999999999999999998764433 3355655433100000 0 011111
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 010509 148 LQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQIL 227 (508)
Q Consensus 148 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~ 227 (508)
.. .+...+.+++.++..|+.+.++..+. .+||| +||+|| +..||+..+..++
T Consensus 235 -----~~-~~~~~~~a~~~l~~~gl~~~~~g~v~-----~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll 286 (615)
T TIGR02903 235 -----SV-HDPIYQGARRDLAETGVPEPKTGLVT-----DAHGG----------------VLFIDE-IGELDPLLQNKLL 286 (615)
T ss_pred -----Cc-cHHHHHHHHHHHHHcCCCchhcCchh-----hcCCC----------------eEEEec-cccCCHHHHHHHH
Confidence 01 11112334556788898877665553 78888 999999 7999999999999
Q ss_pred HHHHH
Q 010509 228 SILLK 232 (508)
Q Consensus 228 ~~L~~ 232 (508)
+.|++
T Consensus 287 ~~Le~ 291 (615)
T TIGR02903 287 KVLED 291 (615)
T ss_pred HHHhh
Confidence 99875
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.5e-06 Score=90.82 Aligned_cols=106 Identities=19% Similarity=0.265 Sum_probs=70.2
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC-hhccccEEEEecCCCCCCCCCHHHHHHHH
Q 010509 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS-NQMTRNTGFVTQEDVLSPYLTVTETMVFT 145 (508)
Q Consensus 67 L~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~ 145 (508)
++.+.-.+++|+.++++|+||+|||||+|+|+|...+..|+|.+++.... ...++.+.+++|+..++++ ....++.+.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~~l~ 263 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMRELQLW 263 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhhccc
Confidence 44555567899999999999999999999999999999999999875432 2345678999998877764 344444332
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 010509 146 ALLQLPNSFTEKEKIKCAEAVMTELGLSECKNS 178 (508)
Q Consensus 146 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 178 (508)
. +.. .-...-....++.+.+...+|.+.
T Consensus 264 ~----~~~-~l~~~f~~~~~~~~~c~f~~c~h~ 291 (356)
T PRK01889 264 D----AED-GVEETFSDIEELAAQCRFRDCAHE 291 (356)
T ss_pred C----chh-hHHHhHHHHHHHHccCCCCCCCCC
Confidence 1 000 001111234455666666666553
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.4e-06 Score=74.24 Aligned_cols=55 Identities=20% Similarity=0.276 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-----CCCEEEEEecCcc
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-----GGRTIVMTIHQPS 248 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-----~g~tii~s~H~~~ 248 (508)
++..........++.++++||.-.. +......+.+.+..... .+.++|+++++..
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3444455566778999999998765 56667788888888753 4788999988654
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.7e-06 Score=91.59 Aligned_cols=62 Identities=21% Similarity=0.274 Sum_probs=43.9
Q ss_pred hCCCEEEEeCCCCC----CC-----HHHHHHHHHHHHHHHc-CCCEEEEEecCcch-------HHHhhccEEEEEeCCe
Q 010509 204 INPSLLFLDEPTSG----LD-----STIAQQILSILLKLAN-GGRTIVMTIHQPSN-------MLYYMFHKVLLLSEGY 265 (508)
Q Consensus 204 ~~P~illLDEPtsg----LD-----~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~-------~~~~~~D~v~lL~~G~ 265 (508)
.+|+++++|.-++= ++ .....+++..|.++++ .|.|++++.|...+ .+.+++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 47999999987652 11 2234556667777765 59999999996542 2567899999998654
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.5e-05 Score=75.16 Aligned_cols=66 Identities=14% Similarity=0.148 Sum_probs=44.3
Q ss_pred HHHHHHHHcCCC-cccccccCCCCCCccCHHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC
Q 010509 162 CAEAVMTELGLS-ECKNSLIGGPLTRGVSGGERKRVS--IGQEILI-NPSLLFLDEPTSGLDSTIAQQILSILLKLANG 236 (508)
Q Consensus 162 ~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~--Ia~aL~~-~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~ 236 (508)
.+.+.++..++. -...+++ ..+|+||+|++. +++.+-. +++++ |+|++|.....++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~-----Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKA-----DKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcEEEEEECc-----ccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 344556666653 1222233 268999999987 5544433 34443 99999999999999999988754
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.3e-06 Score=82.67 Aligned_cols=50 Identities=28% Similarity=0.488 Sum_probs=37.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChh----ccccEEEEecC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ----MTRNTGFVTQE 129 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~----~~~~i~yv~Q~ 129 (508)
|++++|+||||||||||+++|++...+ .+.+++..+... .++.+++++|+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQE 55 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHH
Confidence 789999999999999999999998764 577777765431 12345555554
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.7e-06 Score=67.06 Aligned_cols=35 Identities=40% Similarity=0.647 Sum_probs=29.0
Q ss_pred eeceEEEEeC-CeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 67 LKGITGMVKP-GEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 67 L~~vs~~v~~-Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++.++++.+ |++++|.|||||||||||++|.=.+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456777775 5799999999999999999998655
|
|
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.19 E-value=3e-06 Score=89.91 Aligned_cols=68 Identities=19% Similarity=0.287 Sum_probs=56.4
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcc---cEEEECCEeCCh--------hccccEEEEecCCC
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN---GRITYNGKPFSN--------QMTRNTGFVTQEDV 131 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~---G~I~~~G~~~~~--------~~~~~i~yv~Q~~~ 131 (508)
+.++++++ +.+.+||.++|+|+||+|||||+++|++...++. |.|-.+|+++.. ...+++++|+....
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd 216 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSD 216 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCC
Confidence 45799999 9999999999999999999999999999887765 899999988743 12356788876543
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.8e-06 Score=76.96 Aligned_cols=43 Identities=14% Similarity=0.160 Sum_probs=32.6
Q ss_pred ccCHHHHHHHHHHHHH-----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 010509 187 GVSGGERKRVSIGQEI-----LINPSLLFLDEPTSGLDSTIAQQILSILLKL 233 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL-----~~~P~illLDEPtsgLD~~~~~~i~~~L~~l 233 (508)
.++++++++.....+. ...|+++ |+|++|.....++++.|.++
T Consensus 122 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 122 KLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred cCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 5788888877666553 2345555 99999999999999988764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.6e-06 Score=87.94 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=52.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCCC--CcccEEEECCEeC---ChhccccEEEEecCCCCCCCCCHHHHHHHHHHhc
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRLG--RINGRITYNGKPF---SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQ 149 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~~--~~~G~I~~~G~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~ 149 (508)
=.++||.||||||||||+++|.+++. +.+|+|.+-+.+- +...++..++. |+..+++.+++.+.+.+...++
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence 36999999999999999999999875 6688877755442 22333345544 6666778888888887766554
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.5e-06 Score=69.85 Aligned_cols=47 Identities=32% Similarity=0.488 Sum_probs=36.9
Q ss_pred CccCHHHH-HHHHHHHHHh------h------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 010509 186 RGVSGGER-KRVSIGQEIL------I------NPSLLFLDEPTSGLDSTIAQQILSILLK 232 (508)
Q Consensus 186 ~~LSGGer-qRv~Ia~aL~------~------~P~illLDEPtsgLD~~~~~~i~~~L~~ 232 (508)
.++||||| ..+.++.+++ . .|++++||||+++||+.....+++.|++
T Consensus 31 ~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 31 GTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 48999999 5555544432 2 3799999999999999999999999875
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.6e-06 Score=87.66 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=54.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh----------hccccEEEEecCCCCCCCCCHHHHHHH
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----------QMTRNTGFVTQEDVLSPYLTVTETMVF 144 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~----------~~~~~i~yv~Q~~~l~~~lTv~E~l~~ 144 (508)
++|++++++||||+||||++..|++.+.+..|+|.+.+.|..+ ..++.+.+++|.....|..++.+++..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 5799999999999999999999999887778899988877521 124468888887655565566666654
Q ss_pred H
Q 010509 145 T 145 (508)
Q Consensus 145 ~ 145 (508)
.
T Consensus 192 ~ 192 (318)
T PRK10416 192 A 192 (318)
T ss_pred H
Confidence 3
|
|
| >PF00488 MutS_V: MutS domain V C-terminus | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.2e-05 Score=74.75 Aligned_cols=46 Identities=24% Similarity=0.299 Sum_probs=34.5
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHc-CCCEEEEEecCcc
Q 010509 203 LINPSLLFLDEPTSGLDSTIAQQILS-ILLKLAN-GGRTIVMTIHQPS 248 (508)
Q Consensus 203 ~~~P~illLDEPtsgLD~~~~~~i~~-~L~~l~~-~g~tii~s~H~~~ 248 (508)
+++..++|+||+-.|=++.....+.. .++.+.+ .+..++++||..+
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~ 167 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHE 167 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GG
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccch
Confidence 45678999999999999999887654 4555776 4889999999975
|
; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 508 | ||||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 3e-15 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 5e-12 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 5e-12 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 3e-09 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 8e-09 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-08 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-08 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-08 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-08 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 1e-08 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 1e-08 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 1e-08 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-08 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 3e-08 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 3e-08 | ||
| 1g29_1 | 372 | Malk Length = 372 | 3e-08 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-08 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 4e-08 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-06 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 5e-08 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 5e-08 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 6e-08 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 7e-08 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 7e-08 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 7e-08 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 7e-08 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-07 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-07 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-07 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 2e-07 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 2e-07 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-07 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 2e-07 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-07 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 4e-07 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 5e-07 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 5e-07 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 5e-07 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 5e-07 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 6e-07 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 8e-07 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 8e-07 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 1e-06 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 4e-06 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 4e-06 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 4e-06 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 5e-06 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 7e-06 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 9e-06 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 1e-05 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 2e-05 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 3e-05 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-05 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 9e-05 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-04 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 1e-04 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-04 | ||
| 2vf7_A | 842 | Crystal Structure Of Uvra2 From Deinococcus Radiodu | 2e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 2e-04 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 2e-04 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-04 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-04 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 3e-04 | ||
| 3pih_A | 916 | T. Maritima Uvra In Complex With Fluorescein-Modifi | 3e-04 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 5e-04 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 5e-04 |
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans Length = 842 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 4e-33
Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 19/215 (8%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMT- 120
+ K ILK I+ + G+ + G +G GKTTLL L +G + GK
Sbjct: 32 QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYS 91
Query: 121 -----RNTGFVTQE--DVLSPYLTVTETMV--FTALLQLPNSFTEKEKIKCAEAVMTELG 171
++ GFV+ + V + ++ + + ++ + + A ++ +G
Sbjct: 92 AETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE-AHQLLKLVG 150
Query: 172 LSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL 231
+S I +S GE++RV I + ++ P +L LDEP +GLD + +LSIL
Sbjct: 151 MSAKAQQYI-----GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILD 205
Query: 232 KLANGGR--TIVMTIHQPSNMLYYMFHKVLLLSEG 264
L++ ++ H + F K+LLL +G
Sbjct: 206 SLSDSYPTLAMIYVTHFIEEITAN-FSKILLLKDG 239
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 3e-31
Identities = 43/190 (22%), Positives = 87/190 (45%), Gaps = 16/190 (8%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117
+ ++ L+ IT ++ G ++ GP+G GKTTLL + L + G I YNG P +
Sbjct: 17 SVGYDKPV-LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT- 74
Query: 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALL-QLPNSFTEKEKIKCAEAVMTELGLSECK 176
++ F+ +E ++ ++V + + A L + + K +I + + + + K
Sbjct: 75 KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN---KNEI---MDALESVEVLDLK 128
Query: 177 NSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLA-N 235
L +S G +RV + +L+N + LD+P +D ++L +L++
Sbjct: 129 KKL------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE 182
Query: 236 GGRTIVMTIH 245
G I+ +
Sbjct: 183 KGIVIISSRE 192
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 119 bits (302), Expect = 4e-31
Identities = 59/217 (27%), Positives = 97/217 (44%), Gaps = 30/217 (13%)
Query: 61 IEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--- 117
+ E L ++G V+ GE+L ++GP+G GK+TLL + G + G I + G+P
Sbjct: 10 VAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSA 68
Query: 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK 176
++ + +++Q+ V + L Q K + + V L L +
Sbjct: 69 TKLALHRAYLSQQQTPPFATPVWHYL---TLHQHD-----KTRTELLNDVAGALALDD-- 118
Query: 177 NSLIGGPLTRGVSGGERKRVSI-------GQEILINPSLLFLDEPTSGLDSTIAQQI--L 227
+G + +SGGE +RV + + LL LDEP + LD +AQQ
Sbjct: 119 --KLGRSTNQ-LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLD--VAQQSALD 173
Query: 228 SILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
IL L+ G IVM+ H ++ L + H+ LL G
Sbjct: 174 KILSALSQQGLAIVMSSHDLNHTLRH-AHRAWLLKGG 209
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 7e-31
Identities = 53/190 (27%), Positives = 92/190 (48%), Gaps = 11/190 (5%)
Query: 59 KKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ 118
K+I +K ILKGI+ ++ GE+ ++GP+G GKTT L + + +G +T GK +
Sbjct: 23 KRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE 82
Query: 119 MT---RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC 175
+ ++ +E + E + F A + + E + E GL E
Sbjct: 83 PHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGF---YASSSSEIEEMVERATEIAGLGEK 139
Query: 176 KNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN 235
+ S G +++ I + +++NP L LDEPTSGLD A+++ IL + +
Sbjct: 140 IKDRVST-----YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ 194
Query: 236 GGRTIVMTIH 245
G TI+++ H
Sbjct: 195 EGLTILVSSH 204
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 2e-30
Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 35/213 (16%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRN 122
E + + + + G++LA+LG +GCGK+TLL L G I G+I ++ ++
Sbjct: 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI---------EVYQS 67
Query: 123 TGFVTQEDVLSPYLTVTETMV------FTALLQLPNSFTEKEKIKCAEAVMTELGLSECK 176
GFV Q +V + +V P + A + L L+
Sbjct: 68 IGFVPQFFSSPFAYSVLD-IVLMGRSTHINTFAKPK----SHDYQVAMQALDYLNLTHLA 122
Query: 177 NSLIGGPLTRGVSGGERKRVSIG----QEILINPSLLFLDEPTSGLDSTIAQQILSILLK 232
+SGG+R+ + I E L+ LDEPTS LD +LS+L+
Sbjct: 123 KREFT-----SLSGGQRQLILIARAIASE----CKLILLDEPTSALDLANQDIVLSLLID 173
Query: 233 LA-NGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
LA + T+V T HQP+ ++ +K LLL++
Sbjct: 174 LAQSQNMTVVFTTHQPNQVVAI-ANKTLLLNKQ 205
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 1e-28
Identities = 50/242 (20%), Positives = 87/242 (35%), Gaps = 30/242 (12%)
Query: 42 EDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL 101
+ + K K + K L G K GE++ +LGP+G GKTT L G +
Sbjct: 259 DLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEI 318
Query: 102 GRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIK 161
G +T + S + Q + TV + L+ +
Sbjct: 319 TADEGSVTPEKQILSYKP--------QRIFPNYDGTVQQ------YLENASKDALSTSSW 364
Query: 162 CAEAVMTELGLSECKN----SLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSG 217
E V L L L SGGE +++ I + L LD+P+S
Sbjct: 365 FFEEVTKRLNLHRLLESNVNDL---------SGGELQKLYIAATLAKEADLYVLDQPSSY 415
Query: 218 LDSTIAQQILSILLKLANGGRTIVMTI-HQPSNMLYYMFHKVLLLSEGYPLYSGEASGAM 276
LD + + ++ + + I H S + Y+ ++++ +G P +G A+ +
Sbjct: 416 LDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVF-KGEPEKAGLATSPV 473
Query: 277 NY 278
Sbjct: 474 TL 475
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 1e-20
Identities = 35/190 (18%), Positives = 70/190 (36%), Gaps = 35/190 (18%)
Query: 73 MVKPGEMLAMLGPSGCGKTTLLTALGGRL----GRINGRITYN---------------GK 113
K +L +LG +G GKTT+L L G + G N ++ + +
Sbjct: 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE 80
Query: 114 PFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS 173
+SN++ Q Y+ + + ++ T+ ++ + V L ++
Sbjct: 81 LYSNEL--KIVHKIQ------YVEYASKFLKGTVNEI---LTKIDERGKKDEVKELLNMT 129
Query: 174 ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL 233
N +SGG +R+ + +L + D+P+S LD + + +L
Sbjct: 130 NLWNKDANI-----LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL 184
Query: 234 ANGGRTIVMT 243
IV+
Sbjct: 185 LKNKYVIVVD 194
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 2e-28
Identities = 58/284 (20%), Positives = 104/284 (36%), Gaps = 35/284 (12%)
Query: 3 MIKVVANDINEAQTDQKEDQLLEASDVFTRAKHPVTLKFEDIVYKIKMKKGFYGSNKKIE 62
K N INE L+ +V R K + V + Y K
Sbjct: 313 KPKGTRNGINEFL-----QGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDY 367
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRN 122
L+ G ++ GE++ ++GP+G GKTT + L G G++ ++
Sbjct: 368 GSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT--------- 418
Query: 123 TGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGG 182
+ Q TV E + + + + ++ LG+ + + +
Sbjct: 419 VAYKPQYIKAEYEGTVYE--LLSKIDS--SKLNSNFYK---TELLKPLGIIDLYDRNVED 471
Query: 183 PLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVM 242
+SGGE +RV+I +L + + LDEP++ LD + + L +
Sbjct: 472 -----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526
Query: 243 TI-HQPSNMLYYMFHKVLLLSEGYPLYSGEASG------AMNYF 279
+ H M+ Y+ ++++ EG P G A MN F
Sbjct: 527 VVEHDVL-MIDYVSDRLIVF-EGEPGRHGRALPPMGMREGMNRF 568
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 2e-22
Identities = 47/192 (24%), Positives = 82/192 (42%), Gaps = 23/192 (11%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL------GRINGRIT---YNGK 113
A + +VK G ++ ++GP+G GKTT + L G+L + + G
Sbjct: 103 VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGN 162
Query: 114 PFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS 173
N R + V Y+ + V + +L + +++ E V+ EL L
Sbjct: 163 ELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVREL---LKKVDEVGKFEEVVKELELE 219
Query: 174 ECKNSLIGGPLTRGV---SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSIL 230
L R + SGGE +RV+I +L F DEP+S LD ++ ++
Sbjct: 220 N--------VLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVI 271
Query: 231 LKLANGGRTIVM 242
+LAN G+ +++
Sbjct: 272 RRLANEGKAVLV 283
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 8e-27
Identities = 63/294 (21%), Positives = 106/294 (36%), Gaps = 55/294 (18%)
Query: 3 MIKVVANDINEAQTDQKEDQLLEASDVFTRAKHPVTLKFEDIVYKIKMKKGFYGSNKKIE 62
K N INE L+ +V R K + V + Y K
Sbjct: 243 QPKGTRNGINE-----FLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDY 297
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP-FSNQMTR 121
L+ G +K GE++ ++GP+G GKTT + L G G+I ++ + Q +
Sbjct: 298 GSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIK 357
Query: 122 NTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKC-----AEAVMTELGLSECK 176
TV E ++ + K ++ LG+ +
Sbjct: 358 ----------ADYEGTVYEL------------LSKIDASKLNSNFYKTELLKPLGIIDLY 395
Query: 177 N----SLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLK 232
+ L SGGE +RV+I +L + + LDEP++ LD + +
Sbjct: 396 DREVNEL---------SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH 446
Query: 233 LA-NGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG------AMNYF 279
L +T ++ H M+ Y+ ++++ EG P G A MN F
Sbjct: 447 LMEKNEKTALVVEHDVL-MIDYVSDRLMVF-EGEPGKYGRALPPMGMREGMNRF 498
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 2e-20
Identities = 48/198 (24%), Positives = 85/198 (42%), Gaps = 25/198 (12%)
Query: 55 YGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL------GRINGRI 108
YG N +L + +VK G ++ ++GP+G GK+T + L G+L +
Sbjct: 31 YGVNA-----FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDG 84
Query: 109 T---YNGKPFSNQMTR-NTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAE 164
+ G N + G + V Y+ + V +++L E K+ E
Sbjct: 85 VIRAFRGNELQNYFEKLKNGEIRP-VVKPQYVDLIPKAVKGKVIELLKKADETGKL---E 140
Query: 165 AVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQ 224
V+ L L I + +SGGE +RV+I +L N + F DEP+S LD
Sbjct: 141 EVVKALELENVLEREI-----QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRL 195
Query: 225 QILSILLKLANGGRTIVM 242
+ +L+ G+++++
Sbjct: 196 NAARAIRRLSEEGKSVLV 213
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-26
Identities = 72/206 (34%), Positives = 103/206 (50%), Gaps = 32/206 (15%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-INGRITYNGKPFS 116
K I ILKGI+ VK GE ++++G SG GK+TLL LG L G++ GK
Sbjct: 11 KKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGL-LDAPTEGKVFLEGKEVD 69
Query: 117 ----NQMT--RNT--GFVTQEDVLSPYLTVTETMVFTALLQLP---NSFTEKEKIKCAEA 165
+++ RN GFV Q L P LT E + +P +KE + E
Sbjct: 70 YTNEKELSLLRNRKLGFVFQFHYLIPELTALEN------VIVPMLKMGKPKKEAKERGEY 123
Query: 166 VMTELGLSECK----NSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDST 221
+++ELGL + L SGGE++RV+I + + P LLF DEPT LDS
Sbjct: 124 LLSELGLGDKLSRKPYEL---------SGGEQQRVAIARALANEPILLFADEPTGNLDSA 174
Query: 222 IAQQILSILLKLANGGRTIVMTIHQP 247
++++ I LK+ GG +IVM H+
Sbjct: 175 NTKRVMDIFLKINEGGTSIVMVTHER 200
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 3e-26
Identities = 52/254 (20%), Positives = 90/254 (35%), Gaps = 32/254 (12%)
Query: 34 KHPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTL 93
+ + ED+ + Y S KK + +L G E+L M+G +G GKTTL
Sbjct: 335 QFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTL 394
Query: 94 LTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNS 153
+ L G L G+ + T +F ++
Sbjct: 395 IKLLAGALKPDEGQDIPKLNVS--MKPQKIAPKFPG---------TVRQLFFK--KIRGQ 441
Query: 154 FTEKEKIKCAEAVMTELGLSECKN----SLIGGPLTRGVSGGERKRVSIGQEILINPSLL 209
F + V+ L + + + L SGGE +RV+I + I +
Sbjct: 442 FLNPQFQ---TDVVKPLRIDDIIDQEVQHL---------SGGELQRVAIVLALGIPADIY 489
Query: 210 FLDEPTSGLDSTIAQQILSILLKLA-NGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLY 268
+DEP++ LDS ++ + + +T + H M Y+ KV++ EG P
Sbjct: 490 LIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVF-EGIPSK 547
Query: 269 SGEASGAMNYFASI 282
+ A +
Sbjct: 548 NAHARAPESLLTGC 561
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 2e-19
Identities = 41/214 (19%), Positives = 71/214 (33%), Gaps = 44/214 (20%)
Query: 55 YGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL----GRINGRIT- 109
Y +N +PG++L ++G +G GK+T L L G+ GR +
Sbjct: 87 YSANS------FKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEW 140
Query: 110 ------YNGKPFSNQMTR----------NTGFVTQ--EDVLSPYLTVTETMVFTALLQLP 151
+ G N T+ +V + P V E +
Sbjct: 141 QEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELL--------- 191
Query: 152 NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFL 211
++ + + + L L I +SGGE +R +IG + +
Sbjct: 192 -KLRMEKSPEDVKRYIKILQLENVLKRDI-----EKLSGGELQRFAIGMSCVQEADVYMF 245
Query: 212 DEPTSGLDSTIAQQILSILLKLANGGRTIVMTIH 245
DEP+S LD I+ L + ++ H
Sbjct: 246 DEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEH 279
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-25
Identities = 57/201 (28%), Positives = 98/201 (48%), Gaps = 25/201 (12%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-INGRITYNGKPFS---- 116
E LK + +K GE ++++GPSG GK+T+L +G L + G + + +
Sbjct: 16 EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC-LDKPTEGEVYIDNIKTNDLDD 74
Query: 117 NQMT--RNT--GFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGL 172
+++T R GFV Q+ L P LT E + + + + + +E+ K A + L
Sbjct: 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL 134
Query: 173 SECK-----NSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQIL 227
E N L SGG+++RV+I + + NP ++ D+PT LDS ++I+
Sbjct: 135 EERFANHKPNQL---------SGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIM 185
Query: 228 SILLKL-ANGGRTIVMTIHQP 247
+L KL G+T+V+ H
Sbjct: 186 QLLKKLNEEDGKTVVVVTHDI 206
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 3e-24
Identities = 57/242 (23%), Positives = 108/242 (44%), Gaps = 34/242 (14%)
Query: 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG 98
++ ++ + + +E+KA L+ ++ ++ GE L + G +G GK+TLL +
Sbjct: 3 IEVVNVSHI-------FHRGTPLEKKA-LENVSLVINEGECLLVAGNTGSGKSTLLQIVA 54
Query: 99 GRLGRINGRITYNGKPFSNQMTRNT-GFVTQ--EDVL-SPYLTVTETMVFTALLQLPNSF 154
G + +G + Y+G+ R G Q ED + V + + F + N +
Sbjct: 55 GLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAE--RVFDEVAFA----VKNFY 108
Query: 155 TEKEKIKCAEAVMTELGLSECK------NSLIGGPLTRGVSGGERKRVSIGQEILINPSL 208
+++ + + M +GL L SGGE++RV+I I+ P +
Sbjct: 109 PDRDPVPLVKKAMEFVGLDFDSFKDRVPFFL---------SGGEKRRVAIASVIVHEPDI 159
Query: 209 LFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLY 268
L LDEP GLD +L I+ K G+T+++ H + +V++L +G ++
Sbjct: 160 LILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI-ETVINHVDRVVVLEKGKKVF 218
Query: 269 SG 270
G
Sbjct: 219 DG 220
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 3e-22
Identities = 44/192 (22%), Positives = 75/192 (39%), Gaps = 24/192 (12%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117
+ K E+ L+ I V GE + +LGP+G GKTTLL A+ G L +G I NG
Sbjct: 12 SGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG-LLPYSGNIFINGMEVRK 69
Query: 118 QMTRNTGFVTQE-DVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK 176
+ + T + +TV + + +++ ++ L L E
Sbjct: 70 -IRNYIRYSTNLPEAYEIGVTVNDIVYLY----EELKGLDRDLFL---EMLKALKLGE-- 119
Query: 177 NSLIGGPLTRGV---SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL 233
L R + S G+ V + P ++ LDEP +D+ I + +
Sbjct: 120 -----EILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY 174
Query: 234 ANGGRTIVMTIH 245
G+ ++ H
Sbjct: 175 ---GKEGILVTH 183
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 2e-21
Identities = 69/247 (27%), Positives = 116/247 (46%), Gaps = 43/247 (17%)
Query: 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG 98
LK E++ Y Y LKGI +K GE+ A+LG +G GK+TL
Sbjct: 8 LKVEELNYN-------YSDGTHA-----LKGINMNIKRGEVTAILGGNGVGKSTLFQNFN 55
Query: 99 GRLGRINGRITYNGKPFS------NQMTRNTGFVTQ--EDVL-SPYLTVTETMVFTAL-L 148
G L +GRI ++ KP ++ + G V Q ++ L S +V + + F A+ +
Sbjct: 56 GILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSA--SVYQDVSFGAVNM 113
Query: 149 QLPNSFTEKEKIKCAEAVMTELGLSECKN----SLIGGPLTRGVSGGERKRVSIGQEILI 204
+LP E E K + + G+ K+ L S G++KRV+I +++
Sbjct: 114 KLP----EDEIRKRVDNALKRTGIEHLKDKPTHCL---------SFGQKKRVAIAGVLVM 160
Query: 205 NPSLLFLDEPTSGLDSTIAQQILSILLKL-ANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263
P +L LDEPT+GLD +I+ +L+++ G TI++ H +++ V ++ E
Sbjct: 161 EPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI-DIVPLYCDNVFVMKE 219
Query: 264 GYPLYSG 270
G + G
Sbjct: 220 GRVILQG 226
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 1e-20
Identities = 48/193 (24%), Positives = 83/193 (43%), Gaps = 27/193 (13%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMT- 120
LK I + G A++G +G GK+T+ L R G I GK +
Sbjct: 31 TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RFYDAEGDIKIGGKNVNK-YNR 88
Query: 121 ----RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEA------VMTEL 170
G V Q+ +L ET+ + L ++ T++E IK ++ +
Sbjct: 89 NSIRSIIGIVPQDTIL-----FNETIKYNILYGKLDA-TDEEVIKATKSAQLYDFIEA-- 140
Query: 171 GLSECKNSLIGGPLTRGV--SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILS 228
L + ++++G +G+ SGGER+R++I + +L +P ++ DE TS LDS
Sbjct: 141 -LPKKWDTIVG---NKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196
Query: 229 ILLKLANGGRTIV 241
+ L I+
Sbjct: 197 AVEDLRKNRTLII 209
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 1e-19
Identities = 59/195 (30%), Positives = 96/195 (49%), Gaps = 23/195 (11%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN-GRITYNGKPFSNQMT 120
+ + L+ ++ V PG+ LA++GPSG GK+T+L L R I+ G I +G+ S Q+T
Sbjct: 65 DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF-RFYDISSGCIRIDGQDIS-QVT 122
Query: 121 -----RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTE---LGL 172
+ G V Q+ VL +T+ + E A+A +
Sbjct: 123 QASLRSHIGVVPQDTVL-----FNDTIADNIRYGRVTA-GNDEVEAAAQAAGIHDAIMAF 176
Query: 173 SECKNSLIGGPLTRGV--SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSIL 230
E + +G RG+ SGGE++RV+I + IL P ++ LDE TS LD++ + I + L
Sbjct: 177 PEGYRTQVG---ERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASL 233
Query: 231 LKLANGGRTIVMTIH 245
K+ RT ++ H
Sbjct: 234 AKVCA-NRTTIVVAH 247
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 85.6 bits (213), Expect = 4e-19
Identities = 59/201 (29%), Positives = 100/201 (49%), Gaps = 46/201 (22%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR----INGRITYNGKPFSN 117
+ + IL+ I+ +P ++A GPSG GK+T+ +L L R G IT +G+P N
Sbjct: 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIF-SL---LERFYQPTAGEITIDGQPIDN 68
Query: 118 QMT-----RNTGFVTQEDVLSPYL---TVTETMVFTALLQLPNSFTEKEKIKCAEA---- 165
++ GFV+Q+ + T+ E + + L +T+++ + +
Sbjct: 69 -ISLENWRSQIGFVSQD----SAIMAGTIRENLTYG----LEGDYTDEDLWQVLDLAFAR 119
Query: 166 --VMTELGLSECKNSLIGGPLTRGV--SGGERKRVSIGQEILINPSLLFLDEPTSGLDS- 220
V + + N+ +G RGV SGG+R+R++I + L NP +L LDE T+ LDS
Sbjct: 120 SFVE---NMPDQLNTEVG---ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSE 173
Query: 221 --TIAQQILSILLKLANGGRT 239
++ Q+ L L+K GRT
Sbjct: 174 SESMVQKALDSLMK----GRT 190
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 84.9 bits (211), Expect = 9e-19
Identities = 54/211 (25%), Positives = 98/211 (46%), Gaps = 35/211 (16%)
Query: 55 YGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN-GRITYNGK 113
YG ++ +LKG++ + G++++++G SG GK+T L + L + + G I NG+
Sbjct: 16 YGGHE------VLKGVSLQARAGDVISIIGSSGSGKSTFLRCIN-FLEKPSEGAIIVNGQ 68
Query: 114 PFS-----------------NQMTRNTGFVTQEDVLSPYLTVTE--TMVFTALLQLPNSF 154
+ + V Q L ++TV E +L L
Sbjct: 69 NINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLS--- 125
Query: 155 TEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEP 214
+ + + A + ++G+ E L SGG+++RVSI + + + P +L DEP
Sbjct: 126 -KHDARERALKYLAKVGIDERAQGKYPVHL----SGGQQQRVSIARALAMEPDVLLFDEP 180
Query: 215 TSGLDSTIAQQILSILLKLANGGRTIVMTIH 245
TS LD + ++L I+ +LA G+T+V+ H
Sbjct: 181 TSALDPELVGEVLRIMQQLAEEGKTMVVVTH 211
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 9e-19
Identities = 61/224 (27%), Positives = 112/224 (50%), Gaps = 26/224 (11%)
Query: 31 TRAKHPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGK 90
+ P ++ ++KK +GS + +LKGI ++ GE++ ++GPSG GK
Sbjct: 11 SSGLVPRGSHMLQMIDVHQLKK-SFGSLE------VLKGINVHIREGEVVVVIGPSGSGK 63
Query: 91 TTLLTALGGRLGRIN-GRITYNGKPFS------NQMTRNTGFVTQEDVLSPYLTVTE--T 141
+T L L L + G I +G N++ G V Q L P++TV T
Sbjct: 64 STFLRCLN-LLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNIT 122
Query: 142 MVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQE 201
+ + + P ++ A ++ ++GL + ++ P + +SGG+ +RV+I +
Sbjct: 123 LAPMKVRKWP----REKAEAKAMELLDKVGLKDKAHAY---PDS--LSGGQAQRVAIARA 173
Query: 202 ILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIH 245
+ + P ++ DEPTS LD + ++LS++ +LAN G T+V+ H
Sbjct: 174 LAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTH 217
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 1e-18
Identities = 59/192 (30%), Positives = 94/192 (48%), Gaps = 23/192 (11%)
Query: 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMT---- 120
+L I+ + PGE+L ++G SGCGKTTLL L G +G I+ +GK ++ T
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPV 77
Query: 121 --RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTEL-GLSECKN 177
R G++ QE VL P+LTV + + L N + + M EL G+SE
Sbjct: 78 RERRLGYLVQEGVLFPHLTVYRNIAYG----LGNGKGRTAQERQRIEAMLELTGISELAG 133
Query: 178 SLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLD----STIAQQILSILLKL 233
+SGG+++R ++ + + +P L+ LDEP S LD I + +++ L
Sbjct: 134 RYP-----HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRAN 188
Query: 234 ANGGRTIVMTIH 245
G++ V H
Sbjct: 189 ---GKSAVFVSH 197
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 2e-18
Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 12/145 (8%)
Query: 77 GEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMT--RNTGFVTQEDVLSP 134
+ +LGP+G GK+ L + G + G + NG + R GFV Q+ L P
Sbjct: 24 RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFP 83
Query: 135 YLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK 194
+L+V + + L + E+ + + +LG++ + +SGGER+
Sbjct: 84 HLSVYRNIAY-GLRNVE----RVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQ 133
Query: 195 RVSIGQEILINPSLLFLDEPTSGLD 219
RV++ + ++I P LL LDEP S +D
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVD 158
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 4e-18
Identities = 45/186 (24%), Positives = 84/186 (45%), Gaps = 24/186 (12%)
Query: 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTA 96
+T++F + K + G + ++G++ ++ GEM+ +LGPSG GKTT+L
Sbjct: 13 MTIEFVGVE------KIYPGGAR------SVRGVSFQIREGEMVGLLGPSGSGKTTILRL 60
Query: 97 LGGRLGRINGRITYNGKPFSNQMT--RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSF 154
+ G G + GK ++ RN G V Q L ++TV + + F +
Sbjct: 61 IAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVP-- 118
Query: 155 TEKEKIKCAEAVMTEL-GLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDE 213
K+++ + L N +SGG+++RV++ + + P +L DE
Sbjct: 119 --KDEMDARVRELLRFMRLESYANRFP-----HELSGGQQQRVALARALAPRPQVLLFDE 171
Query: 214 PTSGLD 219
P + +D
Sbjct: 172 PFAAID 177
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 82.1 bits (204), Expect = 6e-18
Identities = 52/206 (25%), Positives = 94/206 (45%), Gaps = 45/206 (21%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR----INGRITYNGKPFSN 117
+ IL I +K GE++ ++G SG GK+TL T L + R NG++ +G +
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTL-TKL---IQRFYIPENGQVLIDGHDLAL 75
Query: 118 ----QMTRNTGFVTQEDVLSPYL---TVTETMVFTALLQLPNSFTEKEKIKCAEA----- 165
+ R G V Q+ L ++ + + P + ++ I A+
Sbjct: 76 ADPNWLRRQVGVVLQD----NVLLNRSIIDNISLAN----PGM-SVEKVIYAAKLAGAHD 126
Query: 166 -VMTELGLSECKNSLIGGPLTRGV--SGGERKRVSIGQEILINPSLLFLDEPTSGLDS-- 220
+ L E N+++G +G SGG+R+R++I + ++ NP +L DE TS LD
Sbjct: 127 FIS---ELREGYNTIVG---EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES 180
Query: 221 -TIAQQILSILLKLANGGRTIVMTIH 245
+ + + + K GRT+++ H
Sbjct: 181 EHVIMRNMHKICK----GRTVIIIAH 202
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 1e-16
Identities = 50/205 (24%), Positives = 90/205 (43%), Gaps = 42/205 (20%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR----INGRITYNGKPFSN- 117
+L+G+T + PG++ A++GP+G GK+T+ AL L G++ +G+P
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVA-AL---LQNLYQPTGGKVLLDGEPLVQY 86
Query: 118 ---QMTRNTGFVTQEDVLSPYL---TVTETMVFTALLQLPNSFTEKEKIKCAEA------ 165
+ V QE P L + E + + L + T +E A
Sbjct: 87 DHHYLHTQVAAVGQE----PLLFGRSFRENIAYG----LTRTPTMEEITAVAMESGAHDF 138
Query: 166 VMTELGLSECKNSLIGGPLTRGV--SGGERKRVSIGQEILINPSLLFLDEPTSGLDS--- 220
+ G + ++ +G G SGG+R+ V++ + ++ P LL LD TS LD+
Sbjct: 139 IS---GFPQGYDTEVG---ETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 221 TIAQQILSILLKLANGGRTIVMTIH 245
Q++L + A RT+++
Sbjct: 193 LRVQRLLYESPEWA--SRTVLLITQ 215
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 1e-16
Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 27/162 (16%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMT------ 120
L ++ V+ GE +LGP+G GKT L + G +GRI +GK +T
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKD----VTDLSPEK 71
Query: 121 RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLI 180
+ FV Q L P++ V + + F +++ +KIK + V+ + I
Sbjct: 72 HDIAFVYQNYSLFPHMNVKKNLEFG--MRM-------KKIKDPKRVLDTARDLK-----I 117
Query: 181 GGPLTRGV---SGGERKRVSIGQEILINPSLLFLDEPTSGLD 219
L R SGGE++RV++ + ++ NP +L LDEP S LD
Sbjct: 118 EHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 77.1 bits (191), Expect = 3e-16
Identities = 55/184 (29%), Positives = 94/184 (51%), Gaps = 17/184 (9%)
Query: 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ-----MT 120
+KGI V G+++ ++G +G GKTT L+A+ G + G+I +NG+ +N+
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80
Query: 121 RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTEL--GLSECKNS 178
V + + P LTV E ++ A + +KE IK + L L E
Sbjct: 81 MGIALVPEGRRIFPELTVYENLMMGAYNR-----KDKEGIKRDLEWIFSLFPRLKERLKQ 135
Query: 179 LIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGR 238
L GG L SGGE++ ++IG+ ++ P LL +DEP+ GL + ++ ++ K+ G
Sbjct: 136 L-GGTL----SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGT 190
Query: 239 TIVM 242
TI++
Sbjct: 191 TILL 194
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 4e-16
Identities = 50/189 (26%), Positives = 73/189 (38%), Gaps = 54/189 (28%)
Query: 60 KIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG--RINGRITYNGKPFSN 117
I+ + ILKG+ +V GE+ A++GP+G GK+TL L G G I +G
Sbjct: 12 SIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDG----- 66
Query: 118 QMTRNTGFVTQEDVLSPYLTVTE--------------------TMVF--TALLQLPNSFT 155
E++L L+ E F AL +
Sbjct: 67 -----------ENILE--LSPDERARKGLFLAFQYPVEVPGVTIANFLRLAL----QAKL 109
Query: 156 EKEK-----IKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLF 210
+E + + L E S + L G SGGE+KR I Q +++ P+
Sbjct: 110 GREVGVAEFWTKVKKALELLDWDE---SYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAV 166
Query: 211 LDEPTSGLD 219
LDE SGLD
Sbjct: 167 LDETDSGLD 175
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 3e-15
Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 40/198 (20%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN-GRITYNGKPFSNQMT 120
E L+ I + G+ +A++G SG GK+T+ +L R I+ G I +G + T
Sbjct: 354 REVPALRNINLKIPAGKTVALVGRSGSGKSTIA-SLITRFYDIDEGHILMDGHDL-REYT 411
Query: 121 -----RNTGFVTQEDVLSPYL---TVTETMVFTALLQLPNSFTEKEKIKCAEA------V 166
V+Q +L TV + + ++ ++ + A +
Sbjct: 412 LASLRNQVALVSQN----VHLFNDTVANNIAYAR----TEEYSREQIEEAARMAYAMDFI 463
Query: 167 MTELGLSECKNSLIGGPLTRGV--SGGERKRVSIGQEILINPSLLFLDEPTSGLDS---T 221
+ +++IG GV SGG+R+R++I + +L + +L LDE TS LD+
Sbjct: 464 NK---MDNGLDTIIGE---NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESER 517
Query: 222 IAQQILSILLKLANGGRT 239
Q L L K RT
Sbjct: 518 AIQAALDELQK----NRT 531
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 3e-15
Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 27/166 (16%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN-GRITYNGKPFSNQMT----- 120
L + ++ GE +LGPSG GKTT + + G L + G + ++ + ++
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAG-LDVPSTGELYFDDRLVASNGKLIVPP 79
Query: 121 --RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKI--KCAEAVMTELGLSECK 176
R G V Q L P LT E + F L N KE+I + E L +
Sbjct: 80 EDRKIGMVFQTWALYPNLTAFENIAFP----LTNMKMSKEEIRKRVEEVAKI-LDIHHV- 133
Query: 177 NSLIGGPLTR---GVSGGERKRVSIGQEILINPSLLFLDEPTSGLD 219
L +SG +++RV++ + ++ +PSLL LDEP S LD
Sbjct: 134 -------LNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 4e-15
Identities = 52/189 (27%), Positives = 80/189 (42%), Gaps = 50/189 (26%)
Query: 60 KIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG--RINGRITYNGKPFSN 117
+E+KAIL+G++ V PGE+ A++GP+G GK+TL L GR G + + G
Sbjct: 29 SVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG----- 83
Query: 118 QMTRNTGFVTQEDVLSPYLTVTE--------------------TMVF--TALLQLPNSFT 155
+D+L+ L+ + F TAL + +
Sbjct: 84 -----------KDLLA--LSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRG 130
Query: 156 EKEK-----IKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLF 210
++ E + L + E L+ + G SGGE+KR I Q ++ P L
Sbjct: 131 QETLDRFDFQDLMEEKIALLKMPE---DLLTRSVNVGFSGGEKKRNDILQMAVLEPELCI 187
Query: 211 LDEPTSGLD 219
LDE SGLD
Sbjct: 188 LDESDSGLD 196
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 77.4 bits (190), Expect = 4e-15
Identities = 41/208 (19%), Positives = 80/208 (38%), Gaps = 26/208 (12%)
Query: 14 AQTDQKEDQLLEASDVFTRAKHPVTLKFEDIVYKIKMKK-GFYGSNKKIEEKAILKGITG 72
++ + RA + + + + + + K +L
Sbjct: 397 TIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQL 456
Query: 73 MVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQE-DV 131
+K + GP+GCGK+TL+ A+ +G P + T +V + D
Sbjct: 457 RLKRARRYGICGPNGCGKSTLMRAIANGQ--------VDGFPTQEECR--TVYVEHDIDG 506
Query: 132 LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191
+V + + + + KE IK + E G ++ +I P +SGG
Sbjct: 507 THSDTSVLDFVFESGV-------GTKEAIK---DKLIEFGFTD---EMIAMP-ISALSGG 552
Query: 192 ERKRVSIGQEILINPSLLFLDEPTSGLD 219
+ ++++ + +L N +L LDEPT+ LD
Sbjct: 553 WKMKLALARAVLRNADILLLDEPTNHLD 580
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 7e-07
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 163 AEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTI 222
E + LGL ++ RG+SGG++ ++ + P L+ LDEPT+ LD
Sbjct: 880 IEEHCSMLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRD- 935
Query: 223 AQQILSILLKLANGGRTIVMTIH 245
+ LS LK G +++ H
Sbjct: 936 SLGALSKALKEFEG--GVIIITH 956
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 1e-04
Identities = 25/189 (13%), Positives = 57/189 (30%), Gaps = 17/189 (8%)
Query: 48 IKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGR 107
+K+ + K + I +A++GP+G GK+TL+ L G L +G
Sbjct: 672 VKVTNMEFQYPGT--SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGE 729
Query: 108 ITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVM 167
+ + ++ Q + +T + ++E + A +
Sbjct: 730 VYTHE-------NCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTG-EDRETMDRANRQI 781
Query: 168 TELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQIL 227
E + G R+ I + + G + + +
Sbjct: 782 NENDAEAMNK-------IFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERW 834
Query: 228 SILLKLANG 236
++ + N
Sbjct: 835 VPMMSVDNA 843
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 7e-15
Identities = 59/195 (30%), Positives = 91/195 (46%), Gaps = 35/195 (17%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN-GRITYNGKPFSNQMT 120
E ILK I ++ GE +A +G SG GK+TL L R + G+I +G +
Sbjct: 352 NEAPILKDINLSIEKGETVAFVGMSGGGKSTL-INLIPRFYDVTSGQILIDGHNIKD-FL 409
Query: 121 -----RNTGFVTQEDVLSPYL---TVTETMVFTALLQLPNSFTEKEKIKCAEAVMTE--- 169
G V Q+ L TV E ++ + T++E ++ A+
Sbjct: 410 TGSLRNQIGLVQQD----NILFSDTVKENILLGRP-----TATDEEVVEAAKMANAHDFI 460
Query: 170 LGLSECKNSLIGGPLTRGV--SGGERKRVSIGQEILINPSLLFLDEPTSGLDS---TIAQ 224
+ L + ++ +G RGV SGG+++R+SI + L NP +L LDE TS LD +I Q
Sbjct: 461 MNLPQGYDTEVG---ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQ 517
Query: 225 QILSILLKLANGGRT 239
+ L +L K RT
Sbjct: 518 EALDVLSK----DRT 528
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 2e-14
Identities = 48/202 (23%), Positives = 81/202 (40%), Gaps = 48/202 (23%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN-GRITYNGKPFSNQMT 120
+EK L ++ + G+ +A++G SG GK+T+ L R ++ G I +G
Sbjct: 354 KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIA-NLFTRFYDVDSGSICLDGHDV-RDYK 411
Query: 121 -----RNTGFVTQEDVLSPYLTVTETMVFT-------ALLQLPNSFTEKEKIKCAEA--- 165
R+ V+Q L F A T ++ + A
Sbjct: 412 LTNLRRHFALVSQNVHL-----------FNDTIANNIAYAAEGEY-TREQIEQAARQAHA 459
Query: 166 ---VMTELGLSECKNSLIGGPLTRGV--SGGERKRVSIGQEILINPSLLFLDEPTSGLDS 220
+ + + +++IG G SGG+R+RV+I + +L + +L LDE TS LD+
Sbjct: 460 MEFIEN---MPQGLDTVIG---ENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDT 513
Query: 221 ---TIAQQILSILLKLANGGRT 239
Q L L K +T
Sbjct: 514 ESERAIQAALDELQK----NKT 531
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 2e-14
Identities = 46/185 (24%), Positives = 88/185 (47%), Gaps = 22/185 (11%)
Query: 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN---------------Q 118
V G++ ++GP+G GK+TL+ + G L GR+ + K +N Q
Sbjct: 30 VNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQ 89
Query: 119 MTRNTGFVT-QEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKN 177
+ +T E++L + E+ + + + E+E ++ A ++ L LS +
Sbjct: 90 TPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP-KEEEMVEKAFKILEFLKLSHLYD 148
Query: 178 SLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGG 237
G +SGG+ K V IG+ ++ NP ++ +DEP +G+ +A I + +L+L G
Sbjct: 149 RKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKG 203
Query: 238 RTIVM 242
T ++
Sbjct: 204 ITFLI 208
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 2e-14
Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 61/214 (28%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR----INGRITYNGKPFS-- 116
+L+G++ VK G+ LA++G SGCGK+T++ L L R + G + +GK
Sbjct: 1045 SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVV-QL---LERFYDPMAGSVFLDGKEIKQL 1100
Query: 117 --NQMTRNTGFVTQEDVL------------SPYLTVTETMVFTAL---------LQLPNS 153
+ G V+QE +L V+ + A LP+
Sbjct: 1101 NVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDK 1160
Query: 154 FTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGV--SGGERKRVSIGQEILINPSLLFL 211
+ T +G +G SGG+++R++I + ++ P +L L
Sbjct: 1161 YN------------TRVG-------------DKGTQLSGGQKQRIAIARALVRQPHILLL 1195
Query: 212 DEPTSGLDSTIAQQILSILLKLANGGRTIVMTIH 245
DE TS LD+ + + L K GRT ++ H
Sbjct: 1196 DEATSALDTESEKVVQEALDKAR-EGRTCIVIAH 1228
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 4e-13
Identities = 56/205 (27%), Positives = 93/205 (45%), Gaps = 39/205 (19%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR----INGRITYNGKPFSN- 117
E ILKG+ VK G+ +A++G SGCGK+T + + R ++G ++ +G+
Sbjct: 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTV----QLMQRLYDPLDGMVSIDGQDIRTI 457
Query: 118 ---QMTRNTGFVTQEDVLSPYLTVTETMVFTA------LLQLPNSFTEKEKIKCAEAVMT 168
+ G V+QE VL F + T E K +
Sbjct: 458 NVRYLREIIGVVSQEPVL-----------FATTIAENIRYGREDV-TMDEIEKAVKEANA 505
Query: 169 E---LGLSECKNSLIGGPLTRGV--SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIA 223
+ L ++L+G RG SGG+++R++I + ++ NP +L LDE TS LD+
Sbjct: 506 YDFIMKLPHQFDTLVG---ERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESE 562
Query: 224 QQILSILLKLANGGRTIVMTIHQPS 248
+ + L K GRT ++ H+ S
Sbjct: 563 AVVQAALDKARE-GRTTIVIAHRLS 586
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 1e-12
Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 49/224 (21%)
Query: 57 SNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116
SN + +LK I ++ G++LA+ G +G GKT+LL + G L G+I ++G+
Sbjct: 44 SNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR--- 100
Query: 117 NQMTRNTGFVTQEDVLSPYL---TVTETMVFTALLQLPNSFTEKEK----IK-CAEAVMT 168
F +Q ++ T+ E ++ + ++ + IK C
Sbjct: 101 ------ISFCSQN----SWIMPGTIKENIIGVSY--------DEYRYRSVIKACQ----- 137
Query: 169 ELGLSECKNSLIGGPLT----RGV--SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTI 222
L E + G+ SGG+R R+S+ + + + L LD P LD
Sbjct: 138 ---LEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 194
Query: 223 AQQILSILLKLANGGRTIVMTIHQPSNMLYYMFH--KVLLLSEG 264
++I + +T ++ + + ++ K+L+L EG
Sbjct: 195 EKEIFESCVCKLMANKTRILVTSK----MEHLKKADKILILHEG 234
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 24/171 (14%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN-GRITYNGKPFS 116
K + + G++ VK GE +A+LGPSGCGKTT L L G + + G I ++
Sbjct: 10 KKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG-IYKPTSGEIYFDDV-LV 67
Query: 117 NQMT---RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKI--KCAEAVMTELG 171
N + R G V Q L P++TV E + F L K+++ + E L
Sbjct: 68 NDIPPKYREVGMVFQNYALYPHMTVFENIAFP----LRARRISKDEVEKRVVEIARK-LL 122
Query: 172 LSECKNSLIGGPLTR---GVSGGERKRVSIGQEILINPSLLFLDEPTSGLD 219
+ L R +SGG+++RV++ + ++ P +L DEP S LD
Sbjct: 123 IDNL--------LDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 55/171 (32%), Positives = 84/171 (49%), Gaps = 24/171 (14%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN-GRITYNGKPFS 116
KK L I +K GE +A+LGPSG GK+TLL + G + + G+I ++ K
Sbjct: 10 VKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG-IYKPTSGKIYFDEK-DV 67
Query: 117 NQMT---RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKI--KCAEAVMTELG 171
++ RN G V Q L P++TV + + F L +E+I K E L
Sbjct: 68 TELPPKDRNVGLVFQNWALYPHMTVYKNIAFP----LELRKAPREEIDKKVREVAKM-LH 122
Query: 172 LSECKNSLIGGPLTR---GVSGGERKRVSIGQEILINPSLLFLDEPTSGLD 219
+ + L R +SGG+++RV+I + ++ P +L LDEP S LD
Sbjct: 123 IDKL--------LNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 3e-12
Identities = 49/225 (21%), Positives = 92/225 (40%), Gaps = 48/225 (21%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTR 121
+LK I ++ G++LA+ G +G GKT+LL + G L G+I ++G+
Sbjct: 19 GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR-------- 70
Query: 122 NTGFVTQEDVLSPYL---TVTETMVFTALLQLPNSFTEKEK----IK-CAEAVMTELGLS 173
F +Q ++ T+ E ++F ++ + IK C L
Sbjct: 71 -ISFCSQF----SWIMPGTIKENIIFGVSY-------DEYRYRSVIKACQ--------LE 110
Query: 174 ECKNSLIGGPLT----RGV--SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQIL 227
E + G+ SGG+R R+S+ + + + L LD P LD ++I
Sbjct: 111 EDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIF 170
Query: 228 SILLKLANGGRTIVMTIHQPSNMLYYMFH--KVLLLSEGYPLYSG 270
+ +T ++ + + ++ K+L+L EG + G
Sbjct: 171 ESCVCKLMANKTRILVTSK----MEHLKKADKILILHEGSSYFYG 211
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 6e-12
Identities = 50/216 (23%), Positives = 94/216 (43%), Gaps = 40/216 (18%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTR 121
+ L GIT + G ++A++G GCGK++LL+AL + ++ G + G
Sbjct: 16 SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGS-------- 67
Query: 122 NTGFVTQEDVLSPYL---TVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNS 178
+V Q+ ++ ++ E ++F QL + CA L
Sbjct: 68 -VAYVPQQ----AWIQNDSLRENILFG--CQLEEPYYRSVIQACA--------LLPDLEI 112
Query: 179 LIGGPLT----RGV--SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILS--IL 230
L G T +GV SGG+++RVS+ + + N + D+P S +D+ + + I I
Sbjct: 113 LPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIG 172
Query: 231 LKLANGGRTIVMTIHQPSNMLYYM--FHKVLLLSEG 264
K +T ++ H + Y+ ++++S G
Sbjct: 173 PKGMLKNKTRILVTHS----MSYLPQVDVIIVMSGG 204
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 7e-12
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 24/171 (14%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN-GRITYNGKPFS 116
K+ + + +K GE L +LGPSGCGKTT L + G L GRI + +
Sbjct: 18 TKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG-LEEPTEGRIYFGDR-DV 75
Query: 117 NQMT---RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKI--KCAEAVMTELG 171
+ RN V Q + P++TV E + F L K++I + A L
Sbjct: 76 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFP----LKIKKFPKDEIDKRVRWAAEL-LQ 130
Query: 172 LSECKNSLIGGPLTR---GVSGGERKRVSIGQEILINPSLLFLDEPTSGLD 219
+ E L R +SGG+R+RV++ + I++ P +L +DEP S LD
Sbjct: 131 IEEL--------LNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 9e-12
Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 30/177 (16%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTAL-------GGRLGRINGRITY 110
K E ++ ++ VK GE + +LGPSGCGKTT L + G++ I ++
Sbjct: 10 WKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI-YIGDKLV- 67
Query: 111 NGKPFSNQMT---RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKI--KCAEA 165
+ R+ V Q L P++TV + + F L +++I + E
Sbjct: 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFP----LKLRKVPRQEIDQRVREV 123
Query: 166 VMTELGLSECKNSLIGGPLTR---GVSGGERKRVSIGQEILINPSLLFLDEPTSGLD 219
LGL+E L R +SGG+R+RV++G+ I+ P + +DEP S LD
Sbjct: 124 AEL-LGLTEL--------LNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 44/217 (20%), Positives = 88/217 (40%), Gaps = 41/217 (18%)
Query: 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----QMTR 121
IL+ I+ + PG+ + +LG +G GK+TLL+A RL G I +G + + Q +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAF-LRLLNTEGEIQIDGVSWDSITLEQWRK 94
Query: 122 NTGFVTQEDV---------LSPYLTVTETMVFTAL--LQLPNSFTEKEKIKCAEAVMTEL 170
G + Q+ L P ++ ++ + L + + + V+ +
Sbjct: 95 AFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFP--GKLDFVLVDG 152
Query: 171 GLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDS---TIAQQIL 227
G +S G ++ + + + +L +L LDEP++ LD I ++ L
Sbjct: 153 GCV--------------LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTL 198
Query: 228 SILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
T+++ + ML + L++ E
Sbjct: 199 KQAFA----DCTVILCEARIEAMLEC--DQFLVIEEN 229
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 4e-11
Identities = 56/217 (25%), Positives = 96/217 (44%), Gaps = 45/217 (20%)
Query: 51 KKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN----- 105
K F+ + I+ L ++ V G++ ++G SG GK+TL+ R +N
Sbjct: 31 TKVFHQGTRTIQ---ALNNVSLHVPAGQIYGVIGASGAGKSTLI-----RC--VNLLERP 80
Query: 106 --GRITYNGKPFSN-------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTE 156
G + +G+ + + R G + Q L TV + L+L N T
Sbjct: 81 TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP--LELDN--TP 136
Query: 157 KEKIKCAEAVMTEL-GLSECKNS----LIGGPLTRGVSGGERKRVSIGQEILINPSLLFL 211
K+++K + L GL + +S L SGG+++RV+I + + NP +L
Sbjct: 137 KDEVKRRVTELLSLVGLGDKHDSYPSNL---------SGGQKQRVAIARALASNPKVLLC 187
Query: 212 DEPTSGLDSTIAQQILSILLKLANG--GRTIVMTIHQ 246
D+ TS LD + IL +L + N G TI++ H+
Sbjct: 188 DQATSALDPATTRSILELLKDI-NRRLGLTILLITHE 223
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 7e-11
Identities = 56/166 (33%), Positives = 78/166 (46%), Gaps = 30/166 (18%)
Query: 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLL-------TALGGRLGRINGRITYNGKPFSNQ 118
+ K I + GE + +GPSGCGK+TLL T G L I + N P +
Sbjct: 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL-FIGEKRM-NDTPPAE- 74
Query: 119 MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKI--KCAEAVMTELGLSECK 176
R G V Q L P+L+V E M F L + +KE I + + L L+
Sbjct: 75 --RGVGMVFQSYALYPHLSVAENMSFG----LKLAGAKKEVINQRVNQVAEV-LQLAHL- 126
Query: 177 NSLIGGPLTR---GVSGGERKRVSIGQEILINPSLLFLDEPTSGLD 219
L R +SGG+R+RV+IG+ ++ PS+ LDEP S LD
Sbjct: 127 -------LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 4e-10
Identities = 81/572 (14%), Positives = 160/572 (27%), Gaps = 201/572 (35%)
Query: 1 MEMIKVVAND--INEAQTDQKEDQLLEASDVFTRAKHPVTLKFEDIVYKIKMKKGFYGSN 58
M IK + ++ D+L + VF K+ V+ K++
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA--KYNVSR--LQPYLKLR--------- 141
Query: 59 KKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTL----------LTALGGR-----LGR 103
+A+L+ ++P + + + G G GKT + + + L
Sbjct: 142 -----QALLE-----LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 104 IN-------------GRITYNGKPFSNQMTR---NTGFVTQE------------------ 129
N +I N S+ + + E
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 130 DVLSPY------------LTVTETMVFTALL----------QLPNSFTEKEK----IKCA 163
+V + LT V L + T E +K
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 164 EAVMTELGLSECKN-----SLIGGPLTRGVSGGER-KRVSIGQ-EILINPSLLFLDEPT- 215
+ +L S+I + G++ + K V+ + +I SL L+
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 216 ----SGL-----DSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266
L + I +LS++ + ++ VM + HK L+ +
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLI--WFDVIKSDVMVVVN-------KLHKYSLVEKQPK 422
Query: 267 LYSGEASGAMNYFASIGYCPSVPTNPSDFLLDLASGMPSNGSWKEQALEQKMLEKEIPSG 326
+ S+P L+L + E AL + +++
Sbjct: 423 EST--------I--------SIP----SIYLELKVKLE-----NEYALHRSIVDH----- 452
Query: 327 MYRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPT-ASNFFETLFV-LLFSVLVSQ 384
Y + F S + + + I + + ++ F +F+ F
Sbjct: 453 -YNIPKTFDSDDLIPPYLDQYF---YSHIGHHLKNIEHPERMTLFRMVFLDFRF------ 502
Query: 385 GLGLAIGAMVMEQK------SATILGSIIMQLFVLA--GGYYVQNVPSF----IAWIEYL 432
+EQK + GSI+ L L Y N P + A +++L
Sbjct: 503 ----------LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552
Query: 433 -SIGHHTYK----------LLLGSQYNYNETY 453
I + L+ + + E +
Sbjct: 553 PKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 4e-10
Identities = 51/205 (24%), Positives = 91/205 (44%), Gaps = 55/205 (26%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN----------GRITYN 111
++K +LK IT +KPG+ +A++GP+G GKTT+ +N G+I +
Sbjct: 366 KKKPVLKDITFHIKPGQKVALVGPTGSGKTTI----------VNLLMRFYDVDRGQILVD 415
Query: 112 GKPFSNQMTR-----NTGFVTQEDVLSPYL---TVTETMVFTALLQLPNSFTEKEKIKCA 163
G ++ R + G V Q+ L TV E + + T++E + A
Sbjct: 416 GID-IRKIKRSSLRSSIGIVLQD----TILFSTTVKENLKYGNP-----GATDEEIKEAA 465
Query: 164 EA------VMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSG 217
+ + L E +++ +S G+R+ ++I + L NP +L LDE TS
Sbjct: 466 KLTHSDHFIKH---LPEGYETVLTDN-GEDLSQGQRQLLAITRAFLANPKILILDEATSN 521
Query: 218 LDS---TIAQQILSILLKLANGGRT 239
+D+ Q + L++ G+T
Sbjct: 522 VDTKTEKSIQAAMWKLME----GKT 542
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 3e-07
Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 17/124 (13%)
Query: 129 EDVLSPYLTVTETM-VFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRG 187
E LS +F + S + L + PLT
Sbjct: 8 EAALS--KIGELASEIFAEFTEGKYSEVVVRAEE----NKVRLFVVWEG---KERPLTF- 57
Query: 188 VSGGERKRV------SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIV 241
+SGGER + ++ + SLL LDEPT LD +++++I+ + ++
Sbjct: 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 117
Query: 242 MTIH 245
+ H
Sbjct: 118 LVSH 121
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 5e-07
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 189 SGGERKRV------SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVM 242
SGGER + ++ + SLL LDEPT LD +++++I+ + +++
Sbjct: 250 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVIL 309
Query: 243 TIHQPS 248
H
Sbjct: 310 VSHDEE 315
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 6e-07
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 40/177 (22%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI-NGRITYNGKP---FSNQ 118
+L G+ VKPG ++A+LG +G GK+TL+ L RL GR+ + +
Sbjct: 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLM-NLIPRLIDPERGRVEVDELDVRTVKLK 413
Query: 119 MTRNT-GFVTQEDVLSPYL---TVTETMVF---TALLQLPNSFTEKE-----KIKCAEAV 166
R V QE L T+ E + + A T+ E KI
Sbjct: 414 DLRGHISAVPQE----TVLFSGTIKENLKWGREDA--------TDDEIVEAAKIAQIHDF 461
Query: 167 MTEL--GLSECKNSLI--GGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLD 219
+ L G +S + GG R SGG+++R+SI + ++ P +L LD+ TS +D
Sbjct: 462 IISLPEGY----DSRVERGG---RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 1e-04
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 189 SGGERKRVSIG-------QEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIV 241
SGGE+ V++ I + LDEPT LD ++ I K+ + + I+
Sbjct: 282 SGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMII 341
Query: 242 MTIHQP 247
+T H
Sbjct: 342 IT-HHR 346
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 508 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.98 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.98 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.97 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.97 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.97 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.97 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.95 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.94 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.93 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.93 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.93 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.91 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.91 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.9 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.89 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.89 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.88 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.88 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.87 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.86 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.86 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.86 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.86 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.86 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.85 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.85 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.85 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.84 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.84 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.83 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.83 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.83 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.82 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.82 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.81 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.81 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.8 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.79 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.78 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.78 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.77 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.77 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.77 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.76 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.75 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.74 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.73 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.73 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.73 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.72 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.71 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.7 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.7 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.67 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.67 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.64 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.62 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.61 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.61 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.6 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.59 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.59 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.58 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.58 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.57 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.54 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.53 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.53 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.52 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.51 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.5 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.48 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.48 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.46 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.45 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.45 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.42 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.42 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.39 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.38 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.37 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.37 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.33 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.32 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.3 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.28 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.26 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.23 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.23 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.22 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.17 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.13 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 99.11 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.06 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 99.04 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.04 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 99.01 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 99.0 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.99 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.97 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.96 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.95 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.93 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.87 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.81 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.76 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.65 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.62 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.61 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.59 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.59 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.54 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.51 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.51 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.47 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.46 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.45 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.4 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.37 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.36 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.36 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.34 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.31 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.28 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.28 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 98.26 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.24 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.22 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.15 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.13 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.12 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 98.11 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 98.07 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 98.06 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 98.0 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 98.0 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.99 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.96 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.93 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.93 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.91 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.9 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.87 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.84 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.83 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.79 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.77 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.77 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.72 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.71 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.7 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.7 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.7 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.65 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.64 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.63 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.61 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.59 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.57 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.57 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.55 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.48 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.44 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.41 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 97.4 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.4 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.38 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.38 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 97.36 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.34 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 97.34 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.29 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.29 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 97.25 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.25 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.16 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 97.16 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.16 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.15 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 97.12 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.08 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 97.07 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.06 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 97.06 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.04 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.99 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.95 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.94 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.94 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.92 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.91 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.88 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 96.87 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.81 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.81 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.79 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.75 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.73 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.71 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.69 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.68 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.64 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 96.62 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 96.6 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.57 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.55 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.55 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.51 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.49 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 96.45 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.41 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 96.36 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.32 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 96.29 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.28 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 96.26 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.23 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.23 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.2 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.2 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.17 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.17 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.16 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.12 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.12 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 96.12 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 96.11 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.11 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 96.09 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 96.08 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.07 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.02 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 96.01 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.01 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 96.0 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 96.0 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 95.97 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.97 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 95.94 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 95.93 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 95.9 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 95.9 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 95.89 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 95.86 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 95.83 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 95.8 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 95.76 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 95.73 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 95.73 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 95.72 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 95.71 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 95.71 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 95.71 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 95.7 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 95.69 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 95.68 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 95.67 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 95.63 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 95.62 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 95.61 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 95.61 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 95.6 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 95.6 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 95.59 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 95.58 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 95.57 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 95.56 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 95.55 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 95.54 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 95.53 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 95.53 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 95.53 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 95.5 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 95.5 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 95.49 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 95.49 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 95.48 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 95.47 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 95.47 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 95.46 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 95.45 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 95.44 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 95.43 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 95.41 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 95.4 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 95.39 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 95.37 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 95.35 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 95.35 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 95.33 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 95.33 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 95.32 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 95.32 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 95.32 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 95.31 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 95.29 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 95.28 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 95.28 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 95.27 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 95.26 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 95.25 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 95.24 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 95.24 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 95.24 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 95.21 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 95.2 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 95.2 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 95.17 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 95.16 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 95.15 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 95.15 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 95.15 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 95.15 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 95.15 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 95.12 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 95.09 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 95.08 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 95.06 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 95.01 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 95.0 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 95.0 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 94.99 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 94.98 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 94.95 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 94.94 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 94.93 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 94.92 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 94.92 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 94.89 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 94.88 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 94.87 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 94.87 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 94.86 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 94.85 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 94.83 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 94.81 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 94.81 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 94.81 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 94.79 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 94.79 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 94.79 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 94.78 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 94.76 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 94.76 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 94.75 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 94.75 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 94.75 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 94.75 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 94.72 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 94.72 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 94.7 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 94.7 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 94.7 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 94.69 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 94.68 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 94.68 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 94.67 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 94.66 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 94.66 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 94.66 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 94.66 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 94.66 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 94.65 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 94.63 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 94.63 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 94.62 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 94.61 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 94.61 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 94.59 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 94.57 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 94.57 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 94.56 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 94.54 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 94.54 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 94.52 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 94.51 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 94.51 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 94.5 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 94.48 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 94.47 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 94.44 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 94.44 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 94.43 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 94.4 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 94.39 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 94.38 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 94.37 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 94.34 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 94.33 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 94.31 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 94.31 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 94.31 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 94.29 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 94.25 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 94.22 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 94.19 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 94.18 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 94.17 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 94.13 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 94.06 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 94.05 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 94.05 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 94.0 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.99 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 93.99 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 93.97 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 93.97 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 93.95 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 93.93 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.91 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 93.88 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 93.87 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 93.86 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 93.85 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 93.81 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 93.77 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 93.7 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.67 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 93.6 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 93.52 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 93.52 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 93.51 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 93.4 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 93.36 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 93.27 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 93.27 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 93.13 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 93.04 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 92.97 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 92.94 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 92.92 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 92.82 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 92.81 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 92.72 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 92.72 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 92.64 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 92.64 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 92.63 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 92.57 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 91.74 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 92.48 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-53 Score=434.92 Aligned_cols=222 Identities=23% Similarity=0.359 Sum_probs=200.0
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
.+|+++||+++|+.. .+..++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.
T Consensus 23 ~mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~ 93 (366)
T 3tui_C 23 HMIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELT 93 (366)
T ss_dssp CCEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECS
T ss_pred ceEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECC
Confidence 369999999998621 11357999999999999999999999999999999999999999999999999985
Q ss_pred h-------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccC
Q 010509 117 N-------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVS 189 (508)
Q Consensus 117 ~-------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 189 (508)
. ..++.+|||||++.+++.+||+||+.++...+ ..++++.+++++++|+.+||.+.++++++ +||
T Consensus 94 ~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~~-----~LS 165 (366)
T 3tui_C 94 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPS-----NLS 165 (366)
T ss_dssp SCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCTT-----TSC
T ss_pred cCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----hCC
Confidence 3 23678999999999999999999999987653 34667778899999999999988877664 999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEE
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLY 268 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~ 268 (508)
|||||||+|||||+.+|++|||||||||||+.++.+++++|+++++ .|+|||++|||++ .+.++||||++|++|++++
T Consensus 166 GGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~G~iv~ 244 (366)
T 3tui_C 166 GGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIE 244 (366)
T ss_dssp HHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999975 4999999999986 5778999999999999999
Q ss_pred EcChhhHH
Q 010509 269 SGEASGAM 276 (508)
Q Consensus 269 ~G~~~~~~ 276 (508)
.|+++++.
T Consensus 245 ~g~~~ev~ 252 (366)
T 3tui_C 245 QDTVSEVF 252 (366)
T ss_dssp CCBHHHHH
T ss_pred EcCHHHHH
Confidence 99998864
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-52 Score=408.88 Aligned_cols=222 Identities=27% Similarity=0.418 Sum_probs=192.1
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++||+++|+... ..+.+|+|||+++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 1 ~l~~~~l~~~y~~~~---------~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ 71 (235)
T 3tif_A 1 MVKLKNVTKTYKMGE---------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71 (235)
T ss_dssp CEEEEEEEEEEEETT---------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTT
T ss_pred CEEEEEEEEEeCCCC---------cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEccc
Confidence 378999999986211 12569999999999999999999999999999999999999999999999998753
Q ss_pred ----h----ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-ccccCCCCCCcc
Q 010509 118 ----Q----MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK-NSLIGGPLTRGV 188 (508)
Q Consensus 118 ----~----~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~L 188 (508)
. .++.+|||+|++.+++.+||+||+.++...+.....++++..+++.++++.+||.+.. ++.+ .+|
T Consensus 72 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~L 146 (235)
T 3tif_A 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQL 146 (235)
T ss_dssp CCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GGS
T ss_pred CCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCCh-----hhC
Confidence 1 1346999999999999999999999976543222345667778899999999998753 6555 499
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 189 SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 189 SGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
||||||||+|||||+.+|++|||||||+|||+.++.++++.|++++++ |+|||++|||++ . ..+|||+++|++|+++
T Consensus 147 SgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~-~-~~~~d~i~~l~~G~i~ 224 (235)
T 3tif_A 147 SGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN-V-ARFGERIIYLKDGEVE 224 (235)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-H-HTTSSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH-H-HHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999765 999999999986 3 4789999999999999
Q ss_pred EEcChhhH
Q 010509 268 YSGEASGA 275 (508)
Q Consensus 268 ~~G~~~~~ 275 (508)
..+++++.
T Consensus 225 ~~~~~~~~ 232 (235)
T 3tif_A 225 REEKLRGF 232 (235)
T ss_dssp EEEECC--
T ss_pred EEcChhhh
Confidence 99987764
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-52 Score=414.18 Aligned_cols=217 Identities=25% Similarity=0.412 Sum_probs=194.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++||+++|+ ++++|+||||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 6 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~ 72 (262)
T 1b0u_A 6 KLHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINL 72 (262)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCE
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccc
Confidence 599999999874 3579999999999999999999999999999999999999999999999998751
Q ss_pred -----------------hccccEEEEecCCCCCCCCCHHHHHHHHH-HhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccc
Q 010509 118 -----------------QMTRNTGFVTQEDVLSPYLTVTETMVFTA-LLQLPNSFTEKEKIKCAEAVMTELGLSEC-KNS 178 (508)
Q Consensus 118 -----------------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~ 178 (508)
..++.+|||+|++.+++.+||+||+.++. ..+ ..+.++.+++++++++.+||.+. .++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~ 149 (262)
T 1b0u_A 73 VRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGK 149 (262)
T ss_dssp EECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred cccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcC
Confidence 23567999999999999999999999864 322 23455566789999999999988 887
Q ss_pred ccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEE
Q 010509 179 LIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKV 258 (508)
Q Consensus 179 ~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v 258 (508)
.++ +|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||++ .+..+||++
T Consensus 150 ~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v 223 (262)
T 1b0u_A 150 YPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHV 223 (262)
T ss_dssp CGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEE
T ss_pred Ccc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEE
Confidence 764 89999999999999999999999999999999999999999999999877999999999986 577899999
Q ss_pred EEEeCCeEEEEcChhhHH
Q 010509 259 LLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 259 ~lL~~G~iv~~G~~~~~~ 276 (508)
++|++|+++..|+++++.
T Consensus 224 ~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 224 IFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp EEEETTEEEEEECHHHHH
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999998764
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-52 Score=432.81 Aligned_cols=218 Identities=28% Similarity=0.437 Sum_probs=199.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++||+++|+ ++.+|+||||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~yg-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~ 69 (381)
T 3rlf_A 3 SVQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMND 69 (381)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT
T ss_pred EEEEEeEEEEEC-------------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCC
Confidence 489999999975 4679999999999999999999999999999999999999999999999999854
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.+|||+|++.++|.+||+||+.|+...+ ..++++.+++++++++.+||.+..++++. +||||||||
T Consensus 70 ~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p~-----~LSGGqrQR 141 (381)
T 3rlf_A 70 TPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQR 141 (381)
T ss_dssp CCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCGG-----GSCHHHHHH
T ss_pred CCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----HCCHHHHHH
Confidence 34567999999999999999999999987654 34677778899999999999998887764 999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
|+|||||+.+|++|||||||||||+..+.++++.|+++.++ |+|+|++|||++ ++..++|||++|++|+++..|++++
T Consensus 142 VaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~~ 220 (381)
T 3rlf_A 142 VAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLE 220 (381)
T ss_dssp HHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEEeCHHH
Confidence 99999999999999999999999999999999999999765 999999999986 5789999999999999999999998
Q ss_pred HHH
Q 010509 275 AMN 277 (508)
Q Consensus 275 ~~~ 277 (508)
+.+
T Consensus 221 l~~ 223 (381)
T 3rlf_A 221 LYH 223 (381)
T ss_dssp HHH
T ss_pred HHh
Confidence 754
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-52 Score=416.89 Aligned_cols=220 Identities=29% Similarity=0.471 Sum_probs=195.7
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..|+++||+++|+. .+.+|+|||+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.
T Consensus 6 ~~l~i~~ls~~y~~------------~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~ 73 (275)
T 3gfo_A 6 YILKVEELNYNYSD------------GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPID 73 (275)
T ss_dssp EEEEEEEEEEECTT------------SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECC
T ss_pred cEEEEEEEEEEECC------------CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECC
Confidence 36999999998741 245999999999999999999999999999999999999999999999999983
Q ss_pred --h----hccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccC
Q 010509 117 --N----QMTRNTGFVTQEDV-LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVS 189 (508)
Q Consensus 117 --~----~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 189 (508)
. ..++.+|||+|++. .+..+||+||+.++.... ..++++.+++++++++.+||.+..++.++ +||
T Consensus 74 ~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LS 145 (275)
T 3gfo_A 74 YSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPTH-----CLS 145 (275)
T ss_dssp CSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBGG-----GSC
T ss_pred cccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcc-----cCC
Confidence 2 34678999999862 344789999999987543 34567777889999999999998887765 899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEecCcchHHHhhccEEEEEeCCeEEE
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLA-NGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLY 268 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~ 268 (508)
|||||||+||+||+.+|++|||||||+|||+.++..+++.|++++ ++|+|||++|||++ .+..+|||+++|++|++++
T Consensus 146 gGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~G~i~~ 224 (275)
T 3gfo_A 146 FGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKEGRVIL 224 (275)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999997 56999999999997 4778999999999999999
Q ss_pred EcChhhHHH
Q 010509 269 SGEASGAMN 277 (508)
Q Consensus 269 ~G~~~~~~~ 277 (508)
.|+++++..
T Consensus 225 ~g~~~~~~~ 233 (275)
T 3gfo_A 225 QGNPKEVFA 233 (275)
T ss_dssp EECHHHHTH
T ss_pred ECCHHHHhc
Confidence 999998754
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-52 Score=413.05 Aligned_cols=217 Identities=26% Similarity=0.473 Sum_probs=194.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC-
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS- 116 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~- 116 (508)
+|+++||+++|+ ++++|+||||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++.
T Consensus 24 ~l~i~~l~~~y~-------------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~ 90 (263)
T 2olj_A 24 MIDVHQLKKSFG-------------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKA 90 (263)
T ss_dssp SEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSS
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCC
Confidence 599999999874 357999999999999999999999999999999999999999999999999874
Q ss_pred -h----hccccEEEEecCCCCCCCCCHHHHHHHHH-HhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 117 -N----QMTRNTGFVTQEDVLSPYLTVTETMVFTA-LLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 117 -~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
. ..++.+|||+|++.+++.+||+||+.++. ... ..+.++.+++++++++.+||.+..++.++ +|||
T Consensus 91 ~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSg 162 (263)
T 2olj_A 91 KDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYPD-----SLSG 162 (263)
T ss_dssp TTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCH
T ss_pred ccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCChh-----hCCH
Confidence 1 23567999999999999999999999864 322 23455566789999999999988887764 8999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||++ .+.++||++++|++|++++.|
T Consensus 163 GqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g 241 (263)
T 2olj_A 163 GQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDGGYIIEEG 241 (263)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999999877999999999986 577899999999999999999
Q ss_pred ChhhHH
Q 010509 271 EASGAM 276 (508)
Q Consensus 271 ~~~~~~ 276 (508)
+++++.
T Consensus 242 ~~~~~~ 247 (263)
T 2olj_A 242 KPEDLF 247 (263)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 998764
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-52 Score=431.61 Aligned_cols=218 Identities=27% Similarity=0.439 Sum_probs=196.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC--
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF-- 115 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~-- 115 (508)
.|+++||+++|+ ++++|+|||+++++||+++|+||||||||||||+|+|+++|++|+|.++|+++
T Consensus 4 ~l~i~~ls~~y~-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~ 70 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-------------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFS 70 (359)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEES
T ss_pred EEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcc
Confidence 589999999975 46799999999999999999999999999999999999999999999999987
Q ss_pred --Ch--hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 116 --SN--QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 116 --~~--~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
.. ..++.+|||+|++.++|.+||+||+.|+...+ ..++++.+++++++++.+||.+.+++++. +||||
T Consensus 71 ~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LSGG 142 (359)
T 3fvq_A 71 KNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYPH-----ELSGG 142 (359)
T ss_dssp SSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCGG-----GSCHH
T ss_pred cccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCChh-----hCCHH
Confidence 22 34578999999999999999999999976433 23455667889999999999998887765 99999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLA-NGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
|||||+|||||+.+|++|||||||||||+..+.++++.|+++. +.|+|+|++|||++ ++..+||||++|++|+++..|
T Consensus 143 q~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~G~i~~~g 221 (359)
T 3fvq_A 143 QQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQGRILQTA 221 (359)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEECCEEEEEe
Confidence 9999999999999999999999999999999999999888875 46999999999986 577899999999999999999
Q ss_pred ChhhHHH
Q 010509 271 EASGAMN 277 (508)
Q Consensus 271 ~~~~~~~ 277 (508)
+++++..
T Consensus 222 ~~~el~~ 228 (359)
T 3fvq_A 222 SPHELYR 228 (359)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9998753
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-51 Score=408.35 Aligned_cols=220 Identities=25% Similarity=0.382 Sum_probs=197.2
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..|+++||+++++ ++++|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+++.
T Consensus 14 ~~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~ 80 (256)
T 1vpl_A 14 GAVVVKDLRKRIG-------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVV 80 (256)
T ss_dssp CCEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETT
T ss_pred CeEEEEEEEEEEC-------------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECC
Confidence 3699999999874 357999999999999999999999999999999999999999999999999875
Q ss_pred h---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 117 N---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 117 ~---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
. ..++.+|||+|++.+++.+||+||+.+..... ..+.++.+++++++++.+||.+..++.++ +||||||
T Consensus 81 ~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~ 152 (256)
T 1vpl_A 81 EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMV 152 (256)
T ss_dssp TCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHH
T ss_pred ccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCChh-----hCCHHHH
Confidence 3 34678999999999999999999999876443 22444556778999999999988887765 8999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
|||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||++ .+..+||++++|++|++++.|+++
T Consensus 153 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~ 231 (256)
T 1vpl_A 153 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVE 231 (256)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEECCEEEEecCHH
Confidence 9999999999999999999999999999999999999999877999999999986 577889999999999999999998
Q ss_pred hHHHH
Q 010509 274 GAMNY 278 (508)
Q Consensus 274 ~~~~~ 278 (508)
++.+.
T Consensus 232 ~~~~~ 236 (256)
T 1vpl_A 232 ELKER 236 (256)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87653
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-51 Score=400.48 Aligned_cols=212 Identities=35% Similarity=0.508 Sum_probs=189.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++|++++|+ ++++|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 4 ~l~~~~l~~~y~-------------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 70 (224)
T 2pcj_A 4 ILRAENIKKVIR-------------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDY 70 (224)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCS
T ss_pred EEEEEeEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCC
Confidence 589999999874 3579999999999999999999999999999999999999999999999998743
Q ss_pred -------hcc-ccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccC
Q 010509 118 -------QMT-RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVS 189 (508)
Q Consensus 118 -------~~~-~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 189 (508)
..+ +.++||+|++.+++.+||+||+.++...+ ..++++.+++++++++.+||.+..++.++ +||
T Consensus 71 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 142 (224)
T 2pcj_A 71 TNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKPY-----ELS 142 (224)
T ss_dssp SCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGG-----GSC
T ss_pred CCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCC
Confidence 122 57999999999999999999999876543 23445556788999999999988887764 999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
|||||||+||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++|||++ .+ ++||++++|++|++++.
T Consensus 143 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~l~~G~i~~~ 220 (224)
T 2pcj_A 143 GGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LA-ELTHRTLEMKDGKVVGE 220 (224)
T ss_dssp HHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HH-TTSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999877999999999976 45 78999999999999998
Q ss_pred cCh
Q 010509 270 GEA 272 (508)
Q Consensus 270 G~~ 272 (508)
|+.
T Consensus 221 g~~ 223 (224)
T 2pcj_A 221 ITR 223 (224)
T ss_dssp EEC
T ss_pred eee
Confidence 863
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-51 Score=424.19 Aligned_cols=221 Identities=24% Similarity=0.400 Sum_probs=199.0
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
...|+++||+++++ +++++|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++
T Consensus 12 ~~~l~~~~l~~~y~------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i 79 (355)
T 1z47_A 12 SMTIEFVGVEKIYP------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRV 79 (355)
T ss_dssp CEEEEEEEEEECCT------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred CceEEEEEEEEEEc------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEEC
Confidence 45799999999862 135699999999999999999999999999999999999999999999999998
Q ss_pred Ch--hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 116 SN--QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 116 ~~--~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
.. ..++.+|||+|+..++|.+||+||+.|+...+ ..++++.+++++++++.+||.+.++++++ +||||||
T Consensus 80 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LSGGq~ 151 (355)
T 1z47_A 80 TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFPH-----ELSGGQQ 151 (355)
T ss_dssp TTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHH
T ss_pred CcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHHHH
Confidence 53 34678999999999999999999999987553 23566677889999999999998887764 9999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
|||+|||||+.+|++|||||||||||+.++.++++.|+++.++ |+|+|++|||++ ++..++||+++|++|+++..|++
T Consensus 152 QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~ 230 (355)
T 1z47_A 152 QRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHEGNVEQFGTP 230 (355)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999765 999999999986 57789999999999999999999
Q ss_pred hhHHH
Q 010509 273 SGAMN 277 (508)
Q Consensus 273 ~~~~~ 277 (508)
+++.+
T Consensus 231 ~~l~~ 235 (355)
T 1z47_A 231 EEVYE 235 (355)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88743
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-51 Score=408.87 Aligned_cols=218 Identities=25% Similarity=0.396 Sum_probs=192.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++||+++|+ ++++|+|||+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 7 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~ 73 (257)
T 1g6h_A 7 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITN 73 (257)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTT
T ss_pred EEEEeeeEEEEC-------------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC
Confidence 699999999875 3579999999999999999999999999999999999999999999999998743
Q ss_pred -----hccccEEEEecCCCCCCCCCHHHHHHHHHHh-cCCC---------CCCHHHHHHHHHHHHHHcCCCcccccccCC
Q 010509 118 -----QMTRNTGFVTQEDVLSPYLTVTETMVFTALL-QLPN---------SFTEKEKIKCAEAVMTELGLSECKNSLIGG 182 (508)
Q Consensus 118 -----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l-~~~~---------~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 182 (508)
..++.++||+|++.+++.+||+||+.++... +... ..++++.+++++++++.+||.+..++.++
T Consensus 74 ~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~- 152 (257)
T 1g6h_A 74 KEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG- 152 (257)
T ss_dssp CCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG-
T ss_pred CCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCch-
Confidence 2356799999999999999999999986532 1110 01233455778999999999988887765
Q ss_pred CCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 183 PLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 183 ~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
+|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++|||++ .+..+||++++|+
T Consensus 153 ----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~ 227 (257)
T 1g6h_A 153 ----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMF 227 (257)
T ss_dssp ----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEE
T ss_pred ----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEE
Confidence 89999999999999999999999999999999999999999999999877999999999987 4678999999999
Q ss_pred CCeEEEEcChhh
Q 010509 263 EGYPLYSGEASG 274 (508)
Q Consensus 263 ~G~iv~~G~~~~ 274 (508)
+|++++.|++++
T Consensus 228 ~G~i~~~g~~~~ 239 (257)
T 1g6h_A 228 NGQIIAEGRGEE 239 (257)
T ss_dssp TTEEEEEEESHH
T ss_pred CCEEEEEeCHHH
Confidence 999999999887
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-51 Score=423.18 Aligned_cols=218 Identities=31% Similarity=0.453 Sum_probs=197.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++|++++++ ++++|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~ 69 (362)
T 2it1_A 3 EIKLENIVKKFG-------------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTE 69 (362)
T ss_dssp CEEEEEEEEESS-------------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT
T ss_pred EEEEEeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCc
Confidence 489999999864 4679999999999999999999999999999999999999999999999999853
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.+|||+|+..++|.+||+||+.|+...+ ..++++.+++++++++.+||.+..+++++ +||||||||
T Consensus 70 ~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~QR 141 (362)
T 2it1_A 70 LPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYPW-----QLSGGQQQR 141 (362)
T ss_dssp SCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGG-----GSCHHHHHH
T ss_pred CCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCChh-----hCCHHHHHH
Confidence 23578999999999999999999999986543 23556667889999999999998887764 999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
|+|||||+.+|++|||||||||||+.++.++++.|+++.++ |+|+|++|||++ ++..++||+++|++|+++..|++++
T Consensus 142 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~ 220 (362)
T 2it1_A 142 VAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIREGEILQVGTPDE 220 (362)
T ss_dssp HHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999764 999999999986 5778999999999999999999988
Q ss_pred HHH
Q 010509 275 AMN 277 (508)
Q Consensus 275 ~~~ 277 (508)
+.+
T Consensus 221 ~~~ 223 (362)
T 2it1_A 221 VYY 223 (362)
T ss_dssp HHH
T ss_pred HHh
Confidence 753
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-51 Score=423.74 Aligned_cols=218 Identities=25% Similarity=0.410 Sum_probs=196.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++|++++++ ++++|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~ 69 (359)
T 2yyz_A 3 SIRVVNLKKYFG-------------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVND 69 (359)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT
T ss_pred EEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCC
Confidence 489999999874 3579999999999999999999999999999999999999999999999999853
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.+|||+|+..++|.+||+||+.|+...+ ..++++.+++++++++.+||.+..+++++ +||||||||
T Consensus 70 ~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSgGq~QR 141 (359)
T 2yyz_A 70 IPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKPT-----QLSGGQQQR 141 (359)
T ss_dssp SCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHH
T ss_pred CChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHH
Confidence 33578999999999999999999999875432 23345556789999999999998887764 999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
|+|||||+.+|++|||||||||||+.++.++++.|+++.++ |.|+|++|||++ ++..++||+++|++|+++..|++++
T Consensus 142 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~ 220 (359)
T 2yyz_A 142 VALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQGKLVQYGTPDE 220 (359)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999764 999999999986 5778999999999999999999998
Q ss_pred HHH
Q 010509 275 AMN 277 (508)
Q Consensus 275 ~~~ 277 (508)
+.+
T Consensus 221 l~~ 223 (359)
T 2yyz_A 221 VYD 223 (359)
T ss_dssp HHH
T ss_pred HHh
Confidence 753
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-51 Score=422.33 Aligned_cols=218 Identities=28% Similarity=0.430 Sum_probs=196.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++||+++|+ ++++|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~ 69 (372)
T 1g29_1 3 GVRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVAD 69 (372)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEE
T ss_pred EEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECcc
Confidence 489999999874 3579999999999999999999999999999999999999999999999998632
Q ss_pred --------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccC
Q 010509 118 --------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVS 189 (508)
Q Consensus 118 --------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 189 (508)
..++.+|||+|+..++|.+||+||+.|+...+ ..++++.+++++++++.+||.+..+++++ +||
T Consensus 70 ~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LS 141 (372)
T 1g29_1 70 PEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPR-----ELS 141 (372)
T ss_dssp GGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGG-----GSC
T ss_pred ccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCcc-----cCC
Confidence 23568999999999999999999999987553 23556677889999999999998887764 999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEE
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLY 268 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~ 268 (508)
|||||||+|||||+.+|++|||||||||||+.++.++++.|+++.++ |.|+|++|||++ ++..++||+++|++|+++.
T Consensus 142 GGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~ 220 (372)
T 1g29_1 142 GGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQ 220 (372)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999764 999999999986 5778999999999999999
Q ss_pred EcChhhHHH
Q 010509 269 SGEASGAMN 277 (508)
Q Consensus 269 ~G~~~~~~~ 277 (508)
.|+++++.+
T Consensus 221 ~g~~~~l~~ 229 (372)
T 1g29_1 221 VGSPDEVYD 229 (372)
T ss_dssp EECHHHHHH
T ss_pred eCCHHHHHh
Confidence 999988753
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-51 Score=407.91 Aligned_cols=216 Identities=25% Similarity=0.407 Sum_probs=193.3
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..|+++|+++.++ ++++|+|||+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.
T Consensus 10 ~~l~~~~l~~~~~-------------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 76 (266)
T 4g1u_C 10 ALLEASHLHYHVQ-------------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLN 76 (266)
T ss_dssp CEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETT
T ss_pred ceEEEEeEEEEeC-------------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECC
Confidence 3699999999875 467999999999999999999999999999999999999999999999999985
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
. ..++.++|++|++.+++.+||+||+.++.... ...+.+++++++++.+||.+..++.++ +|||||
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq 146 (266)
T 4g1u_C 77 SWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDYR-----VLSGGE 146 (266)
T ss_dssp TSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBGG-----GCCHHH
T ss_pred cCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHHH
Confidence 3 34567999999999888899999999875432 122345678999999999998887764 899999
Q ss_pred HHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 193 RKRVSIGQEILI------NPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 193 rqRv~Ia~aL~~------~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
||||+|||||+. +|++|||||||+|||+.++.++++.|++++++ |+|||++|||++ .+.++|||+++|++|+
T Consensus 147 ~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~G~ 225 (266)
T 4g1u_C 147 QQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQGK 225 (266)
T ss_dssp HHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEETTE
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEECCE
Confidence 999999999999 99999999999999999999999999999765 679999999986 5778999999999999
Q ss_pred EEEEcChhhHH
Q 010509 266 PLYSGEASGAM 276 (508)
Q Consensus 266 iv~~G~~~~~~ 276 (508)
+++.|+++++.
T Consensus 226 i~~~g~~~~~~ 236 (266)
T 4g1u_C 226 LVACGTPEEVL 236 (266)
T ss_dssp EEEEECHHHHC
T ss_pred EEEEcCHHHHh
Confidence 99999998764
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-51 Score=401.49 Aligned_cols=216 Identities=26% Similarity=0.425 Sum_probs=190.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|++++++ ++++|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 6 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 72 (240)
T 1ji0_A 6 VLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITN 72 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTT
T ss_pred eEEEEeEEEEEC-------------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC
Confidence 699999999875 3579999999999999999999999999999999999999999999999998853
Q ss_pred ----h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CCcccccccCCCCCCccCHH
Q 010509 118 ----Q-MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELG-LSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 118 ----~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSGG 191 (508)
. .++.++||+|++.+++.+||+||+.++.... .+.++.+++++++++.++ |.+..++.++ +||||
T Consensus 73 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~~~-----~LSgG 143 (240)
T 1ji0_A 73 KPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLGG-----TLSGG 143 (240)
T ss_dssp CCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSBSS-----SSCHH
T ss_pred CCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCChh-----hCCHH
Confidence 1 2456999999999999999999999864211 122344567888999995 9887776654 89999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
|||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++|||++ .+.++||++++|++|+++..|+
T Consensus 144 q~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~ 222 (240)
T 1ji0_A 144 EQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGK 222 (240)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999999999999999999999999999878999999999986 5778999999999999999999
Q ss_pred hhhHH
Q 010509 272 ASGAM 276 (508)
Q Consensus 272 ~~~~~ 276 (508)
++++.
T Consensus 223 ~~~~~ 227 (240)
T 1ji0_A 223 ASELL 227 (240)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88764
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-51 Score=422.14 Aligned_cols=218 Identities=25% Similarity=0.415 Sum_probs=196.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccce--eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKA--ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~--iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
+|+++||+++++ +++ +|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++
T Consensus 3 ~l~i~~l~~~y~-------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i 69 (353)
T 1oxx_K 3 RIIVKNVSKVFK-------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLV 69 (353)
T ss_dssp CEEEEEEEEEEG-------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEE
T ss_pred EEEEEeEEEEEC-------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 489999999875 345 99999999999999999999999999999999999999999999999986
Q ss_pred Ch-------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCcc
Q 010509 116 SN-------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGV 188 (508)
Q Consensus 116 ~~-------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 188 (508)
.. ..++.+|||+|+..++|.+||+||+.|+...+ ..++++.+++++++++.+||.+..+++++ +|
T Consensus 70 ~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~~-----~L 141 (353)
T 1oxx_K 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPR-----EL 141 (353)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GS
T ss_pred cccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----hC
Confidence 32 34678999999999999999999999976432 23566677889999999999998887764 99
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 189 SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 189 SGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
||||||||+|||||+.+|++|||||||||||+.++.++++.|+++.++ |+|+|++|||++ ++..++||+++|++|+++
T Consensus 142 SGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~ 220 (353)
T 1oxx_K 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLV 220 (353)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999764 999999999986 577899999999999999
Q ss_pred EEcChhhHHH
Q 010509 268 YSGEASGAMN 277 (508)
Q Consensus 268 ~~G~~~~~~~ 277 (508)
..|+++++.+
T Consensus 221 ~~g~~~~l~~ 230 (353)
T 1oxx_K 221 QVGKPEDLYD 230 (353)
T ss_dssp EEECHHHHHH
T ss_pred EEcCHHHHHh
Confidence 9999988753
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-51 Score=423.01 Aligned_cols=218 Identities=27% Similarity=0.430 Sum_probs=190.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++||+++|+ ++++|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 11 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~ 77 (372)
T 1v43_A 11 EVKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTY 77 (372)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT
T ss_pred eEEEEEEEEEEC-------------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCC
Confidence 499999999874 3579999999999999999999999999999999999999999999999999853
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.+|||+|+..++|.+||+||+.|+...+ ..++++.+++++++++.+||.+.++++++ +||||||||
T Consensus 78 ~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~QR 149 (372)
T 1v43_A 78 LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPA-----QLSGGQRQR 149 (372)
T ss_dssp SCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTT-----TCCSSCHHH
T ss_pred CChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHH
Confidence 23578999999999999999999999875332 24566677889999999999998887764 999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
|+|||||+.+|++|||||||||||+.++.++++.|+++.++ |.|+|++|||++ ++..++||+++|++|+++..|++++
T Consensus 150 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~ 228 (372)
T 1v43_A 150 VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTE 228 (372)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999765 999999999986 5778999999999999999999988
Q ss_pred HHH
Q 010509 275 AMN 277 (508)
Q Consensus 275 ~~~ 277 (508)
+.+
T Consensus 229 l~~ 231 (372)
T 1v43_A 229 VYL 231 (372)
T ss_dssp HHH
T ss_pred HHh
Confidence 753
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-50 Score=416.04 Aligned_cols=213 Identities=25% Similarity=0.397 Sum_probs=191.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++|++++|+ ++ +|+|+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++..
T Consensus 1 ml~~~~l~~~y~-------------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~ 66 (348)
T 3d31_A 1 MIEIESLSRKWK-------------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTD 66 (348)
T ss_dssp CEEEEEEEEECS-------------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTT
T ss_pred CEEEEEEEEEEC-------------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCC
Confidence 378999999864 35 9999999999999999999999999999999999999999999999999853
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.+|||+|+..++|.+||+||+.|+...+. .+++ ++++++++.+||.+..+++++ +||||||||
T Consensus 67 ~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~~~~-----~LSgGq~QR 135 (348)
T 3d31_A 67 LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKDP---KRVLDTARDLKIEHLLDRNPL-----TLSGGEQQR 135 (348)
T ss_dssp SCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTSCGG-----GSCHHHHHH
T ss_pred CchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHH---HHHHHHHHHcCCchHhcCChh-----hCCHHHHHH
Confidence 345789999999999999999999999865431 1112 678999999999998887764 999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
|+|||||+.+|++|||||||||||+.++.++++.|+++.+ .|+|+|++|||++ ++..++||+++|++|+++..|++++
T Consensus 136 valAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~ 214 (348)
T 3d31_A 136 VALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEE 214 (348)
T ss_dssp HHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHH
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999975 5999999999986 5778999999999999999999987
Q ss_pred HH
Q 010509 275 AM 276 (508)
Q Consensus 275 ~~ 276 (508)
+.
T Consensus 215 ~~ 216 (348)
T 3d31_A 215 IF 216 (348)
T ss_dssp HH
T ss_pred HH
Confidence 74
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-50 Score=395.44 Aligned_cols=211 Identities=22% Similarity=0.339 Sum_probs=187.6
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++|+ + +|+|+|+++++ |+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 2 l~~~~l~~~y~-------------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~ 65 (240)
T 2onk_A 2 FLKVRAEKRLG-------------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL 65 (240)
T ss_dssp CEEEEEEEEET-------------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS
T ss_pred EEEEEEEEEeC-------------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC
Confidence 68899999874 2 49999999999 9999999999999999999999999999999999998753
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH
Q 010509 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 -~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 196 (508)
..++.+|||+|++.+++.+||+||+.++...+ .....+++++++++.+||.+..++.++ +|||||||||
T Consensus 66 ~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkqRv 135 (240)
T 2onk_A 66 PPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRV 135 (240)
T ss_dssp CTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHH
T ss_pred chhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHH
Confidence 34567999999999999999999998864321 112235678999999999988887764 8999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
+|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++|||++ .+..+||++++|++|++++.|+++++
T Consensus 136 ~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 214 (240)
T 2onk_A 136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKEL 214 (240)
T ss_dssp HHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999764 999999999986 57789999999999999999999876
Q ss_pred H
Q 010509 276 M 276 (508)
Q Consensus 276 ~ 276 (508)
.
T Consensus 215 ~ 215 (240)
T 2onk_A 215 F 215 (240)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-50 Score=395.65 Aligned_cols=217 Identities=24% Similarity=0.341 Sum_probs=183.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC--CCCcccEEEECCEeC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGR--LGRINGRITYNGKPF 115 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~--~~~~~G~I~~~G~~~ 115 (508)
+++++|++++++ ++++|+|+|+++++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++
T Consensus 3 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~ 69 (250)
T 2d2e_A 3 QLEIRDLWASID-------------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENI 69 (250)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEC
T ss_pred eEEEEeEEEEEC-------------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEEC
Confidence 589999999874 35799999999999999999999999999999999998 688999999999987
Q ss_pred Ch----h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-CcccccccCCCCCCc-c
Q 010509 116 SN----Q-MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGL-SECKNSLIGGPLTRG-V 188 (508)
Q Consensus 116 ~~----~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~vg~~~~~~-L 188 (508)
.. . .++.++||+|++.+++.+||+||+.+............++..++++++++.+|| .+..++.++ + |
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~L 144 (250)
T 2d2e_A 70 LELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLN-----EGF 144 (250)
T ss_dssp TTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTT-----CC-
T ss_pred CCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc-----cCC
Confidence 53 1 234589999999999999999999886532111112334455778999999999 577887765 6 9
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhh-ccEEEEEeCCeEE
Q 010509 189 SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYM-FHKVLLLSEGYPL 267 (508)
Q Consensus 189 SGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~-~D~v~lL~~G~iv 267 (508)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||++ .+..+ +|++++|++|+++
T Consensus 145 SgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~ 223 (250)
T 2d2e_A 145 SGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMDGRVV 223 (250)
T ss_dssp ---HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999777999999999987 46666 5999999999999
Q ss_pred EEcChh
Q 010509 268 YSGEAS 273 (508)
Q Consensus 268 ~~G~~~ 273 (508)
+.|+++
T Consensus 224 ~~g~~~ 229 (250)
T 2d2e_A 224 ATGGPE 229 (250)
T ss_dssp EEESHH
T ss_pred EEeCHH
Confidence 999987
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=396.94 Aligned_cols=222 Identities=24% Similarity=0.391 Sum_probs=191.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|++++|+... ...+++|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~--------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~ 73 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGT--------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG 73 (266)
T ss_dssp CEEEEEEEEEESTTS--------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCH
T ss_pred EEEEEEEEEEecCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECch
Confidence 589999999874100 001569999999999999999999999999999999999999999999999998864
Q ss_pred -hccccEEEEecCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC--cccccccCCCCCCccCHHHH
Q 010509 118 -QMTRNTGFVTQED-VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS--ECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 118 -~~~~~i~yv~Q~~-~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~vg~~~~~~LSGGer 193 (508)
..++.+|||+|++ ..++.+||+||+.++..... +.++.+++++++++.+||. +..++.++ +||||||
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~~-----~LSgGq~ 144 (266)
T 2yz2_A 74 YEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFY----PDRDPVPLVKKAMEFVGLDFDSFKDRVPF-----FLSGGEK 144 (266)
T ss_dssp HHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTC----TTSCSHHHHHHHHHHTTCCHHHHTTCCGG-----GSCHHHH
T ss_pred HHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcC----CHHHHHHHHHHHHHHcCcCCcccccCChh-----hCCHHHH
Confidence 3567899999995 56677999999998643211 1122345688999999999 88877664 9999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
|||+||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++|||++ .+..+||++++|++|+++..|+++
T Consensus 145 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~ 223 (266)
T 2yz2_A 145 RRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEKGKKVFDGTRM 223 (266)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999999877999999999987 466789999999999999999988
Q ss_pred hHHH
Q 010509 274 GAMN 277 (508)
Q Consensus 274 ~~~~ 277 (508)
++.+
T Consensus 224 ~~~~ 227 (266)
T 2yz2_A 224 EFLE 227 (266)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8754
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-50 Score=401.72 Aligned_cols=221 Identities=27% Similarity=0.388 Sum_probs=188.5
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
.+|+++||+++|+ ++++|+||||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++.
T Consensus 20 ~~l~~~~l~~~y~-------------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~ 86 (279)
T 2ihy_A 20 MLIQLDQIGRMKQ-------------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPG 86 (279)
T ss_dssp EEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC
T ss_pred ceEEEEeEEEEEC-------------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcc
Confidence 4699999999875 357999999999999999999999999999999999999999999999999875
Q ss_pred --h----hccccEEEEecCCCC--CCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCc
Q 010509 117 --N----QMTRNTGFVTQEDVL--SPYLTVTETMVFTALLQLP-NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRG 187 (508)
Q Consensus 117 --~----~~~~~i~yv~Q~~~l--~~~lTv~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 187 (508)
. ..++.++||+|++.+ .+.+||+||+.++...... .....++.+++++++++.+||.+..++.++ +
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 161 (279)
T 2ihy_A 87 KVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIG-----Y 161 (279)
T ss_dssp ---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGG-----G
T ss_pred cccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChh-----h
Confidence 2 346789999998754 3457999999875321100 011123445678999999999988887765 8
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEE--EEEecCcchHHHhhccEEEEEeCCe
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTI--VMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~ti--i~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|| |++|||++ .+..+||++++|++|+
T Consensus 162 LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~G~ 240 (279)
T 2ihy_A 162 LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKDGQ 240 (279)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEETTE
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999997669999 99999986 4678899999999999
Q ss_pred EEEEcChhhHH
Q 010509 266 PLYSGEASGAM 276 (508)
Q Consensus 266 iv~~G~~~~~~ 276 (508)
+++.|+++++.
T Consensus 241 i~~~g~~~~~~ 251 (279)
T 2ihy_A 241 SIQQGAVEDIL 251 (279)
T ss_dssp EEEEEEHHHHC
T ss_pred EEEECCHHHHh
Confidence 99999987753
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-49 Score=390.46 Aligned_cols=229 Identities=27% Similarity=0.385 Sum_probs=192.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC--CCcccEEEECCEeC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL--GRINGRITYNGKPF 115 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~--~~~~G~I~~~G~~~ 115 (508)
+|+++||+++++ ++++|+|||+++++||+++|+||||||||||+|+|+|+. +|++|+|.++|+++
T Consensus 20 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSVE-------------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 699999999874 357999999999999999999999999999999999984 68899999999987
Q ss_pred Ch----hc-cccEEEEecCCCCCCCCCHHHHHHHHHH-hc---CCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 010509 116 SN----QM-TRNTGFVTQEDVLSPYLTVTETMVFTAL-LQ---LPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLT 185 (508)
Q Consensus 116 ~~----~~-~~~i~yv~Q~~~l~~~lTv~E~l~~~~~-l~---~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~ 185 (508)
.. .. ++.++||+|++.+++.+||.|++.+... .+ .....+.++.+++++++++.+||. +..++.++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 162 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN---- 162 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----
Confidence 43 11 3459999999999999999999987542 11 111234455567889999999996 56666653
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhh-ccEEEEEeCC
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYM-FHKVLLLSEG 264 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~-~D~v~lL~~G 264 (508)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||++ .+..+ ||++++|++|
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~G 241 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQG 241 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEETT
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEECC
Confidence 259999999999999999999999999999999999999999999999777999999999986 45565 8999999999
Q ss_pred eEEEEcChhhHHHHHHhcCCC
Q 010509 265 YPLYSGEASGAMNYFASIGYC 285 (508)
Q Consensus 265 ~iv~~G~~~~~~~~f~~~g~~ 285 (508)
++++.|+++++.. ....||.
T Consensus 242 ~i~~~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 242 RIVKSGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp EEEEEECTTHHHH-HHTTTCT
T ss_pred EEEEEcCHHHHhh-hhhcchh
Confidence 9999999987653 4445543
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-48 Score=382.63 Aligned_cols=211 Identities=28% Similarity=0.425 Sum_probs=184.1
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++|++++++. ++++|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.
T Consensus 4 ~l~i~~l~~~y~~------------~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------- 63 (253)
T 2nq2_C 4 ALSVENLGFYYQA------------ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------- 63 (253)
T ss_dssp EEEEEEEEEEETT------------TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE--------
T ss_pred eEEEeeEEEEeCC------------CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE--------
Confidence 5899999998740 35799999999999999999999999999999999999999999998
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP-NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 196 (508)
.++.++||+|++.+++.+||+||+.++...... ......+.+++++++++.+||.+..++.++ +|||||||||
T Consensus 64 -~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv 137 (253)
T 2nq2_C 64 -VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFT-----SLSGGQRQLI 137 (253)
T ss_dssp -ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHH
T ss_pred -EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChh-----hCCHHHHHHH
Confidence 246799999999999999999999986532111 001123445678999999999988887764 8999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
+|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++|||++ .+.++||++++|++|+ ++.|+++++
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 9999999999999999999999999999999999999876 999999999986 5678999999999999 999998776
Q ss_pred H
Q 010509 276 M 276 (508)
Q Consensus 276 ~ 276 (508)
.
T Consensus 216 ~ 216 (253)
T 2nq2_C 216 L 216 (253)
T ss_dssp C
T ss_pred h
Confidence 3
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-49 Score=392.85 Aligned_cols=218 Identities=25% Similarity=0.410 Sum_probs=183.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++||+++|+.. +.+.+|+||||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 16 ~l~~~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~ 85 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH----------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQ 85 (271)
T ss_dssp CEEEEEEEECCTTC----------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG
T ss_pred eEEEEEEEEEeCCC----------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEccc
Confidence 69999999986410 12579999999999999999999999999999999999999999999999998743
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCC-HH----HHHHHHHHHHHHc--CCCcccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFT-EK----EKIKCAEAVMTEL--GLSECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~-~~----~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~ 186 (508)
..++.++||+|++.+++ .||+||+.++.... . . ++ .....++++++.+ |+.+..++.+ .
T Consensus 86 ~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~---~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~-----~ 155 (271)
T 2ixe_A 86 YDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT---P-TMEEITAVAMESGAHDFISGFPQGYDTEVGETG-----N 155 (271)
T ss_dssp BCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC---C-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGG-----T
T ss_pred CCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccC---C-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCc-----C
Confidence 34567999999999887 59999998853211 1 1 11 1122356778888 7777666665 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ +|+|||++|||++ .+. .||++++|++|+
T Consensus 156 ~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~-~~~-~~d~v~~l~~G~ 233 (271)
T 2ixe_A 156 QLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS-LAE-RAHHILFLKEGS 233 (271)
T ss_dssp TSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH-HHT-TCSEEEEEETTE
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHH-hCCEEEEEECCE
Confidence 8999999999999999999999999999999999999999999999965 5999999999986 354 599999999999
Q ss_pred EEEEcChhhHHH
Q 010509 266 PLYSGEASGAMN 277 (508)
Q Consensus 266 iv~~G~~~~~~~ 277 (508)
++..|+++++.+
T Consensus 234 i~~~g~~~~l~~ 245 (271)
T 2ixe_A 234 VCEQGTHLQLME 245 (271)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEECCHHHHHh
Confidence 999999987753
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-48 Score=384.24 Aligned_cols=216 Identities=25% Similarity=0.436 Sum_probs=183.3
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
-.++++||+++++. +++.+|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+++.
T Consensus 6 ~~~~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~ 74 (247)
T 2ff7_A 6 HDITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLA 74 (247)
T ss_dssp EEEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETT
T ss_pred CceeEEEEEEEeCC-----------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhh
Confidence 36899999998730 1357999999999999999999999999999999999999999999999999975
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccC------CCCCC
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIG------GPLTR 186 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg------~~~~~ 186 (508)
. ..++.++||+|++.+++ .||+||+.++.. ..+ .++++++++.+++.+..++... +..+.
T Consensus 75 ~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~ 144 (247)
T 2ff7_A 75 LADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGA 144 (247)
T ss_dssp TSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTT
T ss_pred hCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCC
Confidence 3 34567999999999887 599999987521 112 2346678888888766554320 13456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ +|+|||++||+++. + ..||++++|++|++
T Consensus 145 ~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~G~i 221 (247)
T 2ff7_A 145 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEKGKI 221 (247)
T ss_dssp CCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEETTEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999995 59999999999874 4 45999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
++.|+++++.
T Consensus 222 ~~~g~~~~l~ 231 (247)
T 2ff7_A 222 VEQGKHKELL 231 (247)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999988764
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-48 Score=383.65 Aligned_cols=207 Identities=27% Similarity=0.425 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|++++ ++|+|+|+++++||+++|+||||||||||||+|+|+++|+ |+|.++|+++..
T Consensus 4 ~l~~~~l~~~-----------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~ 65 (249)
T 2qi9_C 4 VMQLQDVAES-----------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEA 65 (249)
T ss_dssp EEEEEEEEET-----------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGG
T ss_pred EEEEEceEEE-----------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCc
Confidence 5889999863 4799999999999999999999999999999999999999 999999998742
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
..++.++||+|++.+++.+||+||+.++.. +. .+ +++++++++.+||.+..++.++ +||||||
T Consensus 66 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~~-~~----~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~ 132 (249)
T 2qi9_C 66 WSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH---DK-TR----TELLNDVAGALALDDKLGRSTN-----QLSGGEW 132 (249)
T ss_dssp SCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS---ST-TC----HHHHHHHHHHTTCGGGTTSBGG-----GCCHHHH
T ss_pred CCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc---cC-Cc----HHHHHHHHHHcCChhHhcCChh-----hCCHHHH
Confidence 345679999999999999999999987521 11 12 4568899999999988887664 8999999
Q ss_pred HHHHHHHHHhhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 194 KRVSIGQEILINPS-------LLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 194 qRv~Ia~aL~~~P~-------illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
|||+||+||+.+|+ +|+|||||+|||+.++..+++.|++++++|+|||++|||++ .+..++|++++|++|++
T Consensus 133 qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i 211 (249)
T 2qi9_C 133 QRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKM 211 (249)
T ss_dssp HHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEE
T ss_pred HHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 99999999999999 99999999999999999999999999877999999999986 56789999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
++.|+++++.
T Consensus 212 ~~~g~~~~~~ 221 (249)
T 2qi9_C 212 LASGRREEVL 221 (249)
T ss_dssp EEEEEHHHHS
T ss_pred EEeCCHHHHh
Confidence 9999987763
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-48 Score=393.15 Aligned_cols=215 Identities=27% Similarity=0.454 Sum_probs=183.4
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..|+++||+++|+. .+.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.
T Consensus 52 ~~i~~~~vs~~y~~------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~ 119 (306)
T 3nh6_A 52 GRIEFENVHFSYAD------------GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDIS 119 (306)
T ss_dssp CCEEEEEEEEESST------------TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETT
T ss_pred CeEEEEEEEEEcCC------------CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcc
Confidence 36999999999741 357999999999999999999999999999999999999999999999999985
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCCCC
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC-------KNSLIGGPLT 185 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~ 185 (508)
. .+++.+|||+|++.+++ .||+||+.++... .+. ++++++++..++.+. .++.++ +..
T Consensus 120 ~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~-----~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~-~~g 188 (306)
T 3nh6_A 120 QVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT-----AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVG-ERG 188 (306)
T ss_dssp SBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT-----CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEES-TTS
T ss_pred cCCHHHHhcceEEEecCCccCc-ccHHHHHHhhccc-----CCH----HHHHHHHHHhCcHHHHHhccchhhhHhc-CCc
Confidence 4 45778999999999986 5999999876321 122 234555666665443 345555 455
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
.+|||||||||+|||||+.+|+|||||||||+||+.++..+++.|+++.+ ++|+|++||+++. +.. ||+|++|++|+
T Consensus 189 ~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~-~~~-aD~i~vl~~G~ 265 (306)
T 3nh6_A 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLST-VVN-ADQILVIKDGC 265 (306)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHH-HHT-CSEEEEEETTE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHH-HHc-CCEEEEEECCE
Confidence 68999999999999999999999999999999999999999999999865 6899999999874 544 99999999999
Q ss_pred EEEEcChhhHHH
Q 010509 266 PLYSGEASGAMN 277 (508)
Q Consensus 266 iv~~G~~~~~~~ 277 (508)
++..|+++++.+
T Consensus 266 iv~~G~~~el~~ 277 (306)
T 3nh6_A 266 IVERGRHEALLS 277 (306)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEECCHHHHHh
Confidence 999999998764
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-48 Score=382.15 Aligned_cols=215 Identities=27% Similarity=0.407 Sum_probs=184.0
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ +++++|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 2 l~~~~l~~~y~------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~ 69 (243)
T 1mv5_A 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNI 69 (243)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTT
T ss_pred EEEEEEEEEeC------------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhC
Confidence 78999998762 13579999999999999999999999999999999999999999999999998743
Q ss_pred ---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccC------CCCCCcc
Q 010509 118 ---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIG------GPLTRGV 188 (508)
Q Consensus 118 ---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg------~~~~~~L 188 (508)
..++.++||+|++.+++ .||+||+.++.. + ..+ .++++++++.+++.+..++... +..+.+|
T Consensus 70 ~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~L 140 (243)
T 1mv5_A 70 SLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKI 140 (243)
T ss_dssp SCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCC
T ss_pred CHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcC
Confidence 34678999999999887 599999987521 1 112 2346788999999877655421 2345799
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEE
Q 010509 189 SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLY 268 (508)
Q Consensus 189 SGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~ 268 (508)
||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ +|+|||++||+++ .+ ..||++++|++|+++.
T Consensus 141 SgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~ 217 (243)
T 1mv5_A 141 SGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEKGQITG 217 (243)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEETTEECC
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999997 6999999999986 44 4599999999999999
Q ss_pred EcChhhHHH
Q 010509 269 SGEASGAMN 277 (508)
Q Consensus 269 ~G~~~~~~~ 277 (508)
.|+++++..
T Consensus 218 ~g~~~~~~~ 226 (243)
T 1mv5_A 218 SGKHNELVA 226 (243)
T ss_dssp CSCHHHHHH
T ss_pred eCCHHHHHh
Confidence 999887653
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-48 Score=373.29 Aligned_cols=203 Identities=19% Similarity=0.335 Sum_probs=175.7
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
...|+++|++++++ + ++|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+++
T Consensus 8 ~~~l~~~~ls~~y~-------------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~ 73 (214)
T 1sgw_A 8 GSKLEIRDLSVGYD-------------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPI 73 (214)
T ss_dssp -CEEEEEEEEEESS-------------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEG
T ss_pred CceEEEEEEEEEeC-------------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEh
Confidence 45799999999864 4 799999999999999999999999999999999999999999999999987
Q ss_pred ChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 116 SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 116 ~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
. ..++.++||+|++.+++.+||+||+.++...+.. . .+ +++++++++.+||.+. ++.+ .+||||||||
T Consensus 74 ~-~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~---~~-~~~~~~~l~~~gl~~~-~~~~-----~~LSgGqkqr 141 (214)
T 1sgw_A 74 T-KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-K---VN-KNEIMDALESVEVLDL-KKKL-----GELSQGTIRR 141 (214)
T ss_dssp G-GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-C---CC-HHHHHHHHHHTTCCCT-TSBG-----GGSCHHHHHH
T ss_pred h-hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-c---hH-HHHHHHHHHHcCCCcC-CCCh-----hhCCHHHHHH
Confidence 5 4567899999999999999999999987654211 1 11 3567889999999877 6655 4999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
|+||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+..++|+++++ +|+|
T Consensus 142 v~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 142 VQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEe-CCcc
Confidence 99999999999999999999999999999999999999866899999999997 467788887654 4443
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-47 Score=377.85 Aligned_cols=211 Identities=22% Similarity=0.265 Sum_probs=183.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|++++++... ..+++|+|+|++++ ||+++|+||||||||||||+|+|++ |++|+|.++|+++..
T Consensus 1 ml~~~~l~~~y~~~~---------~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~ 69 (263)
T 2pjz_A 1 MIQLKNVGITLSGKG---------YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRK 69 (263)
T ss_dssp CEEEEEEEEEEEEET---------TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGG
T ss_pred CEEEEEEEEEeCCCC---------ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcc
Confidence 378999999885210 01579999999999 9999999999999999999999999 999999999998743
Q ss_pred -hccccEE-EEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCccCHHHHH
Q 010509 118 -QMTRNTG-FVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 118 -~~~~~i~-yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerq 194 (508)
..++.++ ||+|++.+ .+||+||+.+..... .. .+++++++++.+||. +..++.++ +|||||||
T Consensus 70 ~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~~-----~LSgGqkq 135 (263)
T 2pjz_A 70 IRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKLY-----KLSAGQSV 135 (263)
T ss_dssp CSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBGG-----GSCHHHHH
T ss_pred hHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCChh-----hCCHHHHH
Confidence 1256799 99999887 789999999876442 11 134678999999998 88887764 99999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhcc-EEEEEeCCeEEEEcChh
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFH-KVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D-~v~lL~~G~iv~~G~~~ 273 (508)
||+||+||+.+|++|+|||||+|||+.++..+++.|+++++ |||++|||++ .+.++|| ++++|++|++++.|+++
T Consensus 136 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~G~i~~~g~~~ 211 (263)
T 2pjz_A 136 LVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVGNRLQGPISVS 211 (263)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999999854 9999999986 4678999 99999999999999998
Q ss_pred hHHH
Q 010509 274 GAMN 277 (508)
Q Consensus 274 ~~~~ 277 (508)
++.+
T Consensus 212 ~l~~ 215 (263)
T 2pjz_A 212 ELLE 215 (263)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8764
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=374.09 Aligned_cols=215 Identities=24% Similarity=0.399 Sum_probs=179.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++.. ..+++|+|+|+++++||+++|+||||||||||+|+|+|++++ +|+|.++|+++..
T Consensus 17 ~l~i~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~ 85 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ----------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNK 85 (260)
T ss_dssp CEEEEEEEECCTTC----------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGG
T ss_pred eEEEEEEEEEeCCC----------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhh
Confidence 59999999987410 024699999999999999999999999999999999999986 8999999998743
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC-------KNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~ 186 (508)
..++.++||+|++.+++ .||+||+.++.. ...+ +++.++++.+++.+. .++.++ ..+.
T Consensus 86 ~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~-~~~~ 154 (260)
T 2ghi_A 86 YNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DATD----EEVIKATKSAQLYDFIEALPKKWDTIVG-NKGM 154 (260)
T ss_dssp BCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEES-SSSB
T ss_pred cCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCCH----HHHHHHHHHhCCHHHHHhcccccccccc-CCcC
Confidence 34678999999999886 599999987421 1122 345566777776543 344443 3467
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++ |+|||++||+++. + ..||++++|++|++
T Consensus 155 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~G~i 231 (260)
T 2ghi_A 155 KLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNKGKI 231 (260)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEETTEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999965 8999999999874 4 45999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
+..|+++++..
T Consensus 232 ~~~g~~~~l~~ 242 (260)
T 2ghi_A 232 VEKGTHKDLLK 242 (260)
T ss_dssp EEEECHHHHHH
T ss_pred EEECCHHHHHh
Confidence 99999988753
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-46 Score=390.29 Aligned_cols=215 Identities=22% Similarity=0.288 Sum_probs=183.9
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..|+++||+++|+. +++.+|+|||++|++||+++|+||||||||||||+|+|+++ ++|+|.++|+++.
T Consensus 18 ~~i~~~~l~~~y~~-----------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~ 85 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE-----------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWD 85 (390)
T ss_dssp CCEEEEEEEEESSS-----------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTT
T ss_pred CeEEEEEEEEEecC-----------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECC
Confidence 46999999999741 14679999999999999999999999999999999999988 8999999999885
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCC------CCCC
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGG------PLTR 186 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~------~~~~ 186 (508)
. ..++.+|||+|++.+++ +||+||+.+.. ... +++++++++.++|.+..++++.. ....
T Consensus 86 ~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~ 154 (390)
T 3gd7_A 86 SITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGC 154 (390)
T ss_dssp SSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTT
T ss_pred cCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccc
Confidence 3 34678999999999998 69999996321 112 34578899999999887766541 1122
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+|||||||||+|||||+.+|++|||||||||||+.++.++++.|+++. .++|+|++|||++ . ...+||+++|++|++
T Consensus 155 ~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e-~-~~~aDri~vl~~G~i 231 (390)
T 3gd7_A 155 VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE-A-MLECDQFLVIEENKV 231 (390)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG-G-GTTCSEEEEEETTEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH-H-HHhCCEEEEEECCEE
Confidence 399999999999999999999999999999999999999999999864 4799999999975 3 356999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
+..|+++++.+
T Consensus 232 ~~~g~~~el~~ 242 (390)
T 3gd7_A 232 RQYDSILELYH 242 (390)
T ss_dssp EEESSHHHHHH
T ss_pred EEECCHHHHHh
Confidence 99999998754
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-45 Score=359.10 Aligned_cols=204 Identities=27% Similarity=0.414 Sum_probs=168.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++. +++++|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|
T Consensus 6 ~l~~~~l~~~y~~-----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g----- 69 (229)
T 2pze_A 6 EVVMENVTAFWEE-----------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----- 69 (229)
T ss_dssp EEEEEEEEECSST-----------TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-----
T ss_pred eEEEEEEEEEeCC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-----
Confidence 6999999998641 135799999999999999999999999999999999999999999999998
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCCCCCccCH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK-------NSLIGGPLTRGVSG 190 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~~LSG 190 (508)
.++|++|++.+++. ||+||+.++.. .... +.+++++.+++.+.. ++.++ ..+.+|||
T Consensus 70 ----~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSg 133 (229)
T 2pze_A 70 ----RISFCSQFSWIMPG-TIKENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSG 133 (229)
T ss_dssp ----CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBC-TTCTTSCH
T ss_pred ----EEEEEecCCcccCC-CHHHHhhccCC------cChH----HHHHHHHHhCcHHHHHhCccccccccc-CCCCcCCH
Confidence 39999999999885 99999987521 1111 233445555554332 22332 33569999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSI-LLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~-L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
||||||+|||||+.+|++++|||||+|||+.++..+++. ++++. +|+|||++||+++ .+. .||++++|++|+++..
T Consensus 134 Gqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~~~-~~d~v~~l~~G~i~~~ 210 (229)
T 2pze_A 134 GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HLK-KADKILILHEGSSYFY 210 (229)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HHH-HCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-HHH-hCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999997 45664 4899999999986 354 5999999999999999
Q ss_pred cChhhHH
Q 010509 270 GEASGAM 276 (508)
Q Consensus 270 G~~~~~~ 276 (508)
|+++++.
T Consensus 211 g~~~~~~ 217 (229)
T 2pze_A 211 GTFSELQ 217 (229)
T ss_dssp ECHHHHH
T ss_pred CCHHHHH
Confidence 9988764
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-45 Score=359.31 Aligned_cols=211 Identities=22% Similarity=0.421 Sum_probs=167.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|++++++. +++++|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g----- 66 (237)
T 2cbz_A 3 SITVRNATFTWAR-----------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG----- 66 (237)
T ss_dssp CEEEEEEEEESCT-----------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-----
T ss_pred eEEEEEEEEEeCC-----------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-----
Confidence 4899999998741 135799999999999999999999999999999999999999999999998
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCccCHHHHHHH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC-KNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv 196 (508)
.++||+|++.+ +.+||+||+.++... .....++.....++.+.+++.+. .++.++ ..+.+|||||||||
T Consensus 67 ----~i~~v~Q~~~~-~~~tv~enl~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkqRv 136 (237)
T 2cbz_A 67 ----SVAYVPQQAWI-QNDSLRENILFGCQL----EEPYYRSVIQACALLPDLEILPSGDRTEIG-EKGVNLSGGQKQRV 136 (237)
T ss_dssp ----CEEEECSSCCC-CSEEHHHHHHTTSCC----CTTHHHHHHHHTTCHHHHTTSTTGGGSEES-TTSBCCCHHHHHHH
T ss_pred ----EEEEEcCCCcC-CCcCHHHHhhCcccc----CHHHHHHHHHHHhhHHHHHhcccccccccc-CCCCCCCHHHHHHH
Confidence 39999999865 578999999875321 11111111111112233333221 122232 34569999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL---KLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~---~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
+|||||+.+|++|+|||||+|||+.++..+++.|+ +++ +|+|||++||+++. + ..||++++|++|+++..|+++
T Consensus 137 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~ 213 (237)
T 2cbz_A 137 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSGGKISEMGSYQ 213 (237)
T ss_dssp HHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEETTEEEEEECHH
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeCCEEEEeCCHH
Confidence 99999999999999999999999999999999995 443 48999999999874 4 469999999999999999998
Q ss_pred hHHH
Q 010509 274 GAMN 277 (508)
Q Consensus 274 ~~~~ 277 (508)
++.+
T Consensus 214 ~~~~ 217 (237)
T 2cbz_A 214 ELLA 217 (237)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 7643
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=397.15 Aligned_cols=216 Identities=23% Similarity=0.373 Sum_probs=185.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++|+. +++++|+|+|+++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.+
T Consensus 341 ~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~ 409 (582)
T 3b60_A 341 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLRE 409 (582)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTT
T ss_pred cEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccc
Confidence 5999999998641 02569999999999999999999999999999999999999999999999999853
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC-------KNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~ 186 (508)
..++.++||+|++.+++. ||+||+.++.. + ..++ ++++++++.+++.+. .|+.+| +...
T Consensus 410 ~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~-~~~~ 479 (582)
T 3b60_A 410 YTLASLRNQVALVSQNVHLFND-TVANNIAYART---E-EYSR----EQIEEAARMAYAMDFINKMDNGLDTIIG-ENGV 479 (582)
T ss_dssp BCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT---S-CCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCC-TTSC
T ss_pred cCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC---C-CCCH----HHHHHHHHHcCCHHHHHhcccccccccc-CCCC
Confidence 456789999999999985 99999987531 1 1222 446778888887654 355565 4467
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+||||||||++|||||+.+|++++||||||+||+.++.++.+.|+++.+ |+|+|++||+++. + +.|||+++|++|++
T Consensus 480 ~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~i 556 (582)
T 3b60_A 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST-I-EQADEIVVVEDGII 556 (582)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG-T-TTCSEEEEEETTEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH-H-HhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999999975 8999999999974 4 46999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
+..|+++++.+
T Consensus 557 ~~~g~~~~l~~ 567 (582)
T 3b60_A 557 VERGTHSELLA 567 (582)
T ss_dssp EEEECHHHHHH
T ss_pred EEecCHHHHHH
Confidence 99999988754
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-44 Score=397.06 Aligned_cols=217 Identities=24% Similarity=0.386 Sum_probs=185.8
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|++++|+. +++++|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~ 408 (582)
T 3b5x_A 340 GEVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVR 408 (582)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhh
Confidence 36999999999751 0256999999999999999999999999999999999999999999999999874
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCCCC
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK-------NSLIGGPLT 185 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~ 185 (508)
+ ..++.++||+|++.+++. ||+||+.++.. + ..+ +++++++++.+++.+.. |+.+| +..
T Consensus 409 ~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~-~~~ 478 (582)
T 3b5x_A 409 DYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIG-ENG 478 (582)
T ss_pred hCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhc-CCC
Confidence 3 457789999999999875 99999988531 1 122 24567788888886543 44554 345
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
.+||||||||++|||||+.+|++|+||||||+||+.++..+.+.|+++.+ |+|+|+++|+++. + +.||++++|++|+
T Consensus 479 ~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~ 555 (582)
T 3b5x_A 479 TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLST-I-EQADEILVVDEGE 555 (582)
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH-H-HhCCEEEEEECCE
Confidence 78999999999999999999999999999999999999999999999865 8999999999863 4 4699999999999
Q ss_pred EEEEcChhhHHH
Q 010509 266 PLYSGEASGAMN 277 (508)
Q Consensus 266 iv~~G~~~~~~~ 277 (508)
++..|+++++.+
T Consensus 556 i~~~g~~~~l~~ 567 (582)
T 3b5x_A 556 IIERGRHADLLA 567 (582)
T ss_pred EEEECCHHHHHh
Confidence 999999988753
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=396.83 Aligned_cols=216 Identities=25% Similarity=0.399 Sum_probs=183.5
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|++++++. +++++|+|+|+++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.
T Consensus 338 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~ 406 (578)
T 4a82_A 338 GRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIK 406 (578)
T ss_dssp CCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGG
T ss_pred CeEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhh
Confidence 36999999998752 1357999999999999999999999999999999999999999999999999985
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCC
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-------CKNSLIGGPLT 185 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~ 185 (508)
+ ..++.++||+|++.+++. ||+||+.++. + ..++ +++.+.++..++.+ -.|+.+| +..
T Consensus 407 ~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~----~-~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~-~~g 475 (578)
T 4a82_A 407 DFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR----P-TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVG-ERG 475 (578)
T ss_dssp GSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC----S-SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCC-GGG
T ss_pred hCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC----C-CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhc-cCC
Confidence 4 457789999999999986 9999998752 1 1222 23445556555543 3456665 445
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
.+||||||||++|||||+.+|++++|||||||||+.++..+.+.|+++. +|+|+|++||+++. + ..|||+++|++|+
T Consensus 476 ~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G~ 552 (578)
T 4a82_A 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST-I-THADKIVVIENGH 552 (578)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-T-TTCSEEEEEETTE
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCE
Confidence 6899999999999999999999999999999999999999999999985 47999999999974 4 4599999999999
Q ss_pred EEEEcChhhHHH
Q 010509 266 PLYSGEASGAMN 277 (508)
Q Consensus 266 iv~~G~~~~~~~ 277 (508)
+++.|+++++.+
T Consensus 553 i~~~g~~~el~~ 564 (578)
T 4a82_A 553 IVETGTHRELIA 564 (578)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEECCHHHHHh
Confidence 999999998764
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-44 Score=396.23 Aligned_cols=216 Identities=25% Similarity=0.382 Sum_probs=182.3
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|++++|+. +++++|+|+|+++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~ 408 (587)
T 3qf4_A 340 GSVSFENVEFRYFE-----------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVR 408 (587)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGG
T ss_pred CcEEEEEEEEEcCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcc
Confidence 36999999998752 1357999999999999999999999999999999999999999999999999985
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCC
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-------ECKNSLIGGPLT 185 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~ 185 (508)
+ ..+++++||+|++.+++. ||+||+.++.. ..++++ +.+.++..++. +-.|+.++ +.+
T Consensus 409 ~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~~~----~~~~~~~~~~~~~i~~l~~g~~~~~~-~~~ 477 (587)
T 3qf4_A 409 TVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRE-----DATDDE----IVEAAKIAQIHDFIISLPEGYDSRVE-RGG 477 (587)
T ss_dssp GBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCS-----SCCHHH----HHHHHHHTTCHHHHHTSSSGGGCEEC-SSS
T ss_pred cCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCC-----CCCHHH----HHHHHHHhCcHHHHHhcccchhhHhc-CCC
Confidence 4 457789999999999975 99999987531 123322 33334444433 34566665 456
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
.+||||||||++|||||+.+|++|+||||||+||+.++.++.+.|+++. +|+|+|++||+++. + ..|||+++|++|+
T Consensus 478 ~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-~-~~~d~i~vl~~G~ 554 (587)
T 3qf4_A 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPT-A-LLADKILVLHEGK 554 (587)
T ss_dssp CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH-H-TTSSEEEEEETTE
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHH-H-HhCCEEEEEECCE
Confidence 7899999999999999999999999999999999999999999999984 58999999999874 4 5799999999999
Q ss_pred EEEEcChhhHHH
Q 010509 266 PLYSGEASGAMN 277 (508)
Q Consensus 266 iv~~G~~~~~~~ 277 (508)
+++.|+++++.+
T Consensus 555 i~~~g~~~el~~ 566 (587)
T 3qf4_A 555 VAGFGTHKELLE 566 (587)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEECCHHHHHh
Confidence 999999998764
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-44 Score=394.69 Aligned_cols=214 Identities=24% Similarity=0.411 Sum_probs=180.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++|+ +++++|+|+|+++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.+
T Consensus 354 ~i~~~~v~~~y~------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~ 421 (598)
T 3qf4_B 354 EIEFKNVWFSYD------------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRK 421 (598)
T ss_dssp CEEEEEEECCSS------------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGG
T ss_pred eEEEEEEEEECC------------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhh
Confidence 699999999864 13569999999999999999999999999999999999999999999999999854
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC-------KNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~ 186 (508)
..++.++||+|++.+++ .||+||+.++.. ..++ ++++++++..++.+. .++.+| +...
T Consensus 422 ~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~-~~g~ 490 (598)
T 3qf4_B 422 IKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNP-----GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLT-DNGE 490 (598)
T ss_dssp SCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSST-----TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCH-HHHT
T ss_pred CCHHHHHhceEEEeCCCcccc-ccHHHHHhcCCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccchhc-CCCC
Confidence 45778999999999987 599999987521 1122 223445555555433 344444 2345
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+||||||||++|||||+.+|++|+||||||+||+.++.++.+.|+++. +|+|+|++||+++. + ..||++++|++|++
T Consensus 491 ~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G~i 567 (598)
T 3qf4_B 491 DLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLRDGEI 567 (598)
T ss_dssp TSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEECSSSE
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEE
Confidence 899999999999999999999999999999999999999999999986 58999999999984 5 44999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
+..|+++++.+
T Consensus 568 ~~~g~~~~l~~ 578 (598)
T 3qf4_B 568 VEMGKHDELIQ 578 (598)
T ss_dssp EECSCHHHHHH
T ss_pred EEECCHHHHHh
Confidence 99999998764
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-43 Score=351.38 Aligned_cols=199 Identities=27% Similarity=0.433 Sum_probs=155.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+++. .+++|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|
T Consensus 40 ~l~~~~l~~~---------------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g----- 99 (290)
T 2bbs_A 40 SLSFSNFSLL---------------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----- 99 (290)
T ss_dssp -------------------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-----
T ss_pred eEEEEEEEEc---------------CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-----
Confidence 5889999874 24689999999999999999999999999999999999999999999998
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------cccCCCCCCccCH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKN-------SLIGGPLTRGVSG 190 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LSG 190 (508)
.++||+|++.+++. ||+||+. +. . ... .++++.++.+++.+..+ +.++ ..+.+|||
T Consensus 100 ----~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~LSg 162 (290)
T 2bbs_A 100 ----RISFCSQNSWIMPG-TIKENII-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSG 162 (290)
T ss_dssp ----CEEEECSSCCCCSS-BHHHHHH-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCH
T ss_pred ----EEEEEeCCCccCcc-cHHHHhh-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhc-CccCcCCH
Confidence 38999999998885 9999997 32 1 111 12344555566644322 2222 23468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSIL-LKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L-~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
|||||++|||||+.+|++|+|||||+|||+.++..+++.+ +++. +|+|||++||+++ .+ ..||++++|++|+++..
T Consensus 163 Gq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~-~~-~~~d~i~~l~~G~i~~~ 239 (290)
T 2bbs_A 163 GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFY 239 (290)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH-HH-HcCCEEEEEECCeEEEe
Confidence 9999999999999999999999999999999999999974 5554 4899999999986 45 45999999999999999
Q ss_pred cChhhHH
Q 010509 270 GEASGAM 276 (508)
Q Consensus 270 G~~~~~~ 276 (508)
|+++++.
T Consensus 240 g~~~~l~ 246 (290)
T 2bbs_A 240 GTFSELQ 246 (290)
T ss_dssp ECHHHHH
T ss_pred CCHHHHh
Confidence 9998874
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-42 Score=407.35 Aligned_cols=218 Identities=27% Similarity=0.460 Sum_probs=188.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++|+.+ .+.++|+|+||+|+|||.+||+||||||||||+++|.|++.|++|+|.+||.++.+
T Consensus 1076 ~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~ 1145 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKT 1145 (1321)
T ss_dssp CEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTT
T ss_pred eEEEEEEEEeCCCC----------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhh
Confidence 69999999998621 24579999999999999999999999999999999999999999999999999864
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CcccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGL-------SECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~ 186 (508)
.+|++++|||||+.+|+. |++||+.++.. |...+++ .+.++++..++ .+-.||.+| +...
T Consensus 1146 i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld---~~~~sd~----ei~~Al~~a~l~~~I~~Lp~GldT~vg-e~G~ 1216 (1321)
T 4f4c_A 1146 LNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLD---PSSVTMA----QVEEAARLANIHNFIAELPEGFETRVG-DRGT 1216 (1321)
T ss_dssp BCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSC---TTTSCHH----HHHHHHHHTTCHHHHHTSTTTTCSEET-TTSC
T ss_pred CCHHHHHhheEEECCCCEeeCc-cHHHHHhccCC---CCCCCHH----HHHHHHHHhCChHHHHcCcCCCCCEec-CCCc
Confidence 578999999999999986 99999987531 2233443 35556666655 445688887 4456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+||||||||++|||||+++|+||+||||||+||+.+...|.+.|+++. +|+|+|+++|+++. + ..||||++|++|+|
T Consensus 1217 ~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT-i-~~aD~I~Vld~G~I 1293 (1321)
T 4f4c_A 1217 QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT-V-MNADCIAVVSNGTI 1293 (1321)
T ss_dssp SSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST-T-TTCSEEEEESSSSE
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH-H-HhCCEEEEEECCEE
Confidence 899999999999999999999999999999999999999999998865 48999999999984 4 56899999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
+++|+++++++
T Consensus 1294 vE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1294 IEKGTHTQLMS 1304 (1321)
T ss_dssp EEEECHHHHHH
T ss_pred EEECCHHHHHh
Confidence 99999999875
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-41 Score=399.56 Aligned_cols=215 Identities=27% Similarity=0.433 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++|+|+.. +++++|+|+|+++++||.+||+||||||||||+++|.|.++|++|+|.+||+++.+
T Consensus 415 ~I~~~nvsF~Y~~~----------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~ 484 (1321)
T 4f4c_A 415 DITVENVHFTYPSR----------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRD 484 (1321)
T ss_dssp CEEEEEEEECCSSS----------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTT
T ss_pred cEEEEEeeeeCCCC----------CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchh
Confidence 69999999998621 24689999999999999999999999999999999999999999999999999864
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CcccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGL-------SECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~ 186 (508)
.+|+++|||+|++.+++. |++||+.|+.. ..+++ ++.++++..++ .+-.||.+|+ ...
T Consensus 485 ~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~-----~~~~~----~v~~a~~~a~l~~~i~~lp~G~~T~vGe-~G~ 553 (1321)
T 4f4c_A 485 INLEFLRKNVAVVSQEPALFNC-TIEENISLGKE-----GITRE----EMVAACKMANAEKFIKTLPNGYNTLVGD-RGT 553 (1321)
T ss_dssp SCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTCT-----TCCHH----HHHHHHHHTTCHHHHHHSTTTTSSEESS-SSC
T ss_pred ccHHHHhhcccccCCcceeeCC-chhHHHhhhcc-----cchHH----HHHHHHHHccchhHHHcCCCCCccEecC-CCC
Confidence 467899999999999975 99999998631 23333 34455555443 4566888984 456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++||||++++|+|++||||||+||+.+...+.+.|+++.+ |+|+|+++|+++. .+.||+|++|++|+|
T Consensus 554 ~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls~--i~~aD~Iivl~~G~i 630 (1321)
T 4f4c_A 554 QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLST--IRNADLIISCKNGQV 630 (1321)
T ss_dssp CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTTT--TTTCSEEEEEETTEE
T ss_pred CCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEEcccHHH--HHhCCEEEEeeCCee
Confidence 8999999999999999999999999999999999999999999999864 8999999999973 467999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
++.|+.+++.
T Consensus 631 ve~Gth~eL~ 640 (1321)
T 4f4c_A 631 VEVGDHRALM 640 (1321)
T ss_dssp EEEECHHHHH
T ss_pred eccCCHHHHH
Confidence 9999998875
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=393.55 Aligned_cols=216 Identities=28% Similarity=0.457 Sum_probs=182.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++|+.. .++++|+|+|+++++||++||+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 387 ~i~~~~v~~~y~~~----------~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~ 456 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSR----------KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRT 456 (1284)
T ss_dssp CEEEEEEEECCSST----------TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGG
T ss_pred eEEEEEEEEEcCCC----------CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHh
Confidence 69999999987521 13579999999999999999999999999999999999999999999999999853
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELG-------LSECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~ 186 (508)
..|+.+|||+|++.+++. ||+||+.++.. ..+.++. ++.++..+ +.+..||.+| +...
T Consensus 457 ~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~~~~~----~~~~~~~~~~~~i~~l~~g~~t~~~-~~g~ 525 (1284)
T 3g5u_A 457 INVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----DVTMDEI----EKAVKEANAYDFIMKLPHQFDTLVG-ERGA 525 (1284)
T ss_dssp SCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCCHHHH----HHHHHHTTCHHHHHHSTTGGGCCCS-SSSC
T ss_pred CCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----CCCHHHH----HHHHHHhCcHHHHHhcccccccccc-CCCC
Confidence 457789999999999986 99999998732 1233332 23333332 3345577776 4566
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+||||||||++|||||+.+|+||+||||||+||+.+...+.+.++++. +|+|+|+++|+++. + ..+|+|++|++|++
T Consensus 526 ~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-i-~~~d~i~vl~~G~i 602 (1284)
T 3g5u_A 526 QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLST-V-RNADVIAGFDGGVI 602 (1284)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHH-H-TTCSEEEECSSSCC
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEE
Confidence 899999999999999999999999999999999999999999998875 48999999999874 5 45999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
++.|+.++..+
T Consensus 603 ~~~g~~~~l~~ 613 (1284)
T 3g5u_A 603 VEQGNHDELMR 613 (1284)
T ss_dssp CCEECHHHHHH
T ss_pred EEECCHHHHHh
Confidence 99999998754
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-40 Score=388.21 Aligned_cols=218 Identities=25% Similarity=0.434 Sum_probs=182.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++|+.. .++++|+|+|+++++||++||+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 1030 ~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~ 1099 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQ 1099 (1284)
T ss_dssp CEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTS
T ss_pred cEEEEEEEEECCCC----------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEccc
Confidence 59999999987521 13469999999999999999999999999999999999999999999999999853
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELG-------LSECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~ 186 (508)
..|+.++||||++.+++ .||+||+.++... ...+.++. .+.++..+ +.+..||.+| +...
T Consensus 1100 ~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~---~~~~~~~i----~~~~~~~~~~~~i~~l~~gldt~vg-e~G~ 1170 (1284)
T 3g5u_A 1100 LNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNS---RVVSYEEI----VRAAKEANIHQFIDSLPDKYNTRVG-DKGT 1170 (1284)
T ss_dssp SCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSS---CCCCHHHH----HHHHHHHTCHHHHSSTTTGGGCBCS-TTSC
T ss_pred CCHHHHHhceEEECCCCcccc-ccHHHHHhccCCC---CCCCHHHH----HHHHHHhCcHHHHHhCccccccccC-CCCC
Confidence 46788999999998886 6999999875321 12233332 23333333 3455677887 4567
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+||||||||++|||||+.+|+||+|||||||||+.+...+.+.|+++ .+|+|+|+++|+++. + ..||||++|++|++
T Consensus 1171 ~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~~G~i 1247 (1284)
T 3g5u_A 1171 QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQNGKV 1247 (1284)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEETBEE
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEECCEE
Confidence 89999999999999999999999999999999999999999999885 458999999999985 5 45999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
++.|+++++.+
T Consensus 1248 ~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1248 KEHGTHQQLLA 1258 (1284)
T ss_dssp EEEECHHHHHH
T ss_pred EEECCHHHHHh
Confidence 99999998764
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=357.55 Aligned_cols=206 Identities=20% Similarity=0.305 Sum_probs=179.1
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
...++++|+++.++ ...|+++|+++++||+++|+||||||||||||+|+|+++|++|+|.+
T Consensus 355 ~~~l~~~~l~~~~~--------------~~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~----- 415 (607)
T 3bk7_A 355 ETLVEYPRLVKDYG--------------SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW----- 415 (607)
T ss_dssp CEEEEECCEEEECS--------------SCEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-----
T ss_pred ceEEEEeceEEEec--------------ceEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-----
Confidence 35799999988764 23689999999999999999999999999999999999999999976
Q ss_pred ChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 116 SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 116 ~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
.+.++|++|+..+.+.+||.|++....... ....++++++++.+||.+..++.++ +||||||||
T Consensus 416 ----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~QR 479 (607)
T 3bk7_A 416 ----DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQR 479 (607)
T ss_dssp ----CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBGG-----GCCHHHHHH
T ss_pred ----eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHH
Confidence 246999999988878899999886531110 0123567889999999988887765 899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeC--CeEEEEcCh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSE--GYPLYSGEA 272 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~--G~iv~~G~~ 272 (508)
|+||++|+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++|||+. .+..+|||+++|++ |+++..|++
T Consensus 480 v~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p 558 (607)
T 3bk7_A 480 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPP 558 (607)
T ss_dssp HHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCC
T ss_pred HHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCH
Confidence 9999999999999999999999999999999999999974 6999999999986 57789999999986 888899999
Q ss_pred hhHHH
Q 010509 273 SGAMN 277 (508)
Q Consensus 273 ~~~~~ 277 (508)
+++..
T Consensus 559 ~~~~~ 563 (607)
T 3bk7_A 559 MGMRE 563 (607)
T ss_dssp EEHHH
T ss_pred HHHHh
Confidence 98765
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=353.35 Aligned_cols=207 Identities=22% Similarity=0.306 Sum_probs=178.6
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
...++++|+++.++ ...|+++|+++++||+++|+||||||||||+|+|+|+++|++|+|.+
T Consensus 285 ~~~l~~~~l~~~~~--------------~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~----- 345 (538)
T 1yqt_A 285 ETLVTYPRLVKDYG--------------SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW----- 345 (538)
T ss_dssp CEEEEECCEEEEET--------------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-----
T ss_pred CeEEEEeeEEEEEC--------------CEEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-----
Confidence 35799999988764 23689999999999999999999999999999999999999999975
Q ss_pred ChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 116 SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 116 ~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
...++||+|+....+.+||.|++........ ...++++++++.+|+.+..++.++ .||||||||
T Consensus 346 ----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~qr 409 (538)
T 1yqt_A 346 ----DLTVAYKPQYIKADYEGTVYELLSKIDASKL-------NSNFYKTELLKPLGIIDLYDREVN-----ELSGGELQR 409 (538)
T ss_dssp ----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSBGG-----GCCHHHHHH
T ss_pred ----CceEEEEecCCcCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHH
Confidence 2469999999887788999998865311110 012467889999999888777765 899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeC--CeEEEEcCh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSE--GYPLYSGEA 272 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~--G~iv~~G~~ 272 (508)
|+||++|+.+|++|+|||||+|||+.++.++++.|+++++ .|.|||++|||++ .+..+|||+++|++ |+++..|++
T Consensus 410 v~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~ 488 (538)
T 1yqt_A 410 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPP 488 (538)
T ss_dssp HHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCC
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCH
Confidence 9999999999999999999999999999999999999974 5999999999986 57789999999996 788899999
Q ss_pred hhHHHH
Q 010509 273 SGAMNY 278 (508)
Q Consensus 273 ~~~~~~ 278 (508)
+++..-
T Consensus 489 ~~~~~~ 494 (538)
T 1yqt_A 489 MGMREG 494 (538)
T ss_dssp EEHHHH
T ss_pred HHHHhh
Confidence 887653
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=345.61 Aligned_cols=207 Identities=21% Similarity=0.256 Sum_probs=175.1
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
...++++|+++.++ ...|+++|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|
T Consensus 267 ~~~l~~~~l~~~~~--------------~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~--- 329 (538)
T 3ozx_A 267 KTKMKWTKIIKKLG--------------DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK--- 329 (538)
T ss_dssp CEEEEECCEEEEET--------------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC---
T ss_pred cceEEEcceEEEEC--------------CEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC---
Confidence 34688899988764 2458888999999999999999999999999999999999999998764
Q ss_pred ChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 116 SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 116 ~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
+.++|++|+......+||.|++.+...... .. ..+.++++++.+||.+..++.++ +||||||||
T Consensus 330 -----~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~~--~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~QR 393 (538)
T 3ozx_A 330 -----QILSYKPQRIFPNYDGTVQQYLENASKDAL----ST--SSWFFEEVTKRLNLHRLLESNVN-----DLSGGELQK 393 (538)
T ss_dssp -----CCEEEECSSCCCCCSSBHHHHHHHHCSSTT----CT--TSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHHHH
T ss_pred -----eeeEeechhcccccCCCHHHHHHHhhhhcc----ch--hHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHH
Confidence 358999999777778999999987421111 01 12457889999999988887765 999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeC--CeEEEEcCh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSE--GYPLYSGEA 272 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~--G~iv~~G~~ 272 (508)
|+|||+|+.+|++|||||||+|||+.++.++++.|+++++ .|.|||++|||++ .+..+||||++|++ |.....+++
T Consensus 394 v~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~ 472 (538)
T 3ozx_A 394 LYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSP 472 (538)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCC
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCCh
Confidence 9999999999999999999999999999999999999975 5999999999986 57789999999986 566677776
Q ss_pred hhHH
Q 010509 273 SGAM 276 (508)
Q Consensus 273 ~~~~ 276 (508)
.+..
T Consensus 473 ~~~~ 476 (538)
T 3ozx_A 473 VTLK 476 (538)
T ss_dssp EEHH
T ss_pred HHHH
Confidence 6543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-37 Score=337.27 Aligned_cols=193 Identities=23% Similarity=0.272 Sum_probs=164.8
Q ss_pred ceeeeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCH
Q 010509 64 KAILKGITGMVKPG-----EMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTV 138 (508)
Q Consensus 64 ~~iL~~vs~~v~~G-----e~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv 138 (508)
+.+++|+|+++++| |+++|+||||||||||+|+|+|+++|++|+. + .+..++|++|+.......||
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~---~~~~i~~~~q~~~~~~~~tv 430 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------I---PKLNVSMKPQKIAPKFPGTV 430 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------C---CSCCEEEECSSCCCCCCSBH
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------c---cCCcEEEecccccccCCccH
Confidence 35789999999999 7899999999999999999999999999962 1 13469999999776666799
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 010509 139 TETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGL 218 (508)
Q Consensus 139 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgL 218 (508)
+|++.... + .... ..+.++++++.++|.+.+++.++ +|||||||||+||++|+.+|++|+|||||+||
T Consensus 431 ~e~~~~~~--~--~~~~---~~~~~~~~l~~l~l~~~~~~~~~-----~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gL 498 (608)
T 3j16_B 431 RQLFFKKI--R--GQFL---NPQFQTDVVKPLRIDDIIDQEVQ-----HLSGGELQRVAIVLALGIPADIYLIDEPSAYL 498 (608)
T ss_dssp HHHHHHHC--S--STTT---SHHHHHHTHHHHTSTTTSSSBSS-----SCCHHHHHHHHHHHHTTSCCSEEEECCTTTTC
T ss_pred HHHHHHHh--h--cccc---cHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEECCCCCC
Confidence 99875422 1 1111 12456789999999998887765 89999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeC--CeEEEEcChhhHHHH
Q 010509 219 DSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSE--GYPLYSGEASGAMNY 278 (508)
Q Consensus 219 D~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~--G~iv~~G~~~~~~~~ 278 (508)
|+.++.++++.|+++++ .|.|||++|||++ ++..++||+++|++ |+++..|+|+++..-
T Consensus 499 D~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 499 DSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 99999999999999864 5999999999986 57789999999996 899999999987653
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=345.18 Aligned_cols=206 Identities=23% Similarity=0.309 Sum_probs=141.6
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHH---------------------HHHhcCCCCc-------ccEEEECCEe
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLL---------------------TALGGRLGRI-------NGRITYNGKP 114 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL---------------------~~L~g~~~~~-------~G~I~~~G~~ 114 (508)
.+++|+||||+|++||+++|+||||||||||+ +++.|+..|+ .|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 35689999999999999999999999999998 8888887777 5667777766
Q ss_pred CChhccccEEEEecCCC-------------------CCCCCCHHHHHHHHHHhcCCCCCCHHHHH------HHHHHHHHH
Q 010509 115 FSNQMTRNTGFVTQEDV-------------------LSPYLTVTETMVFTALLQLPNSFTEKEKI------KCAEAVMTE 169 (508)
Q Consensus 115 ~~~~~~~~i~yv~Q~~~-------------------l~~~lTv~E~l~~~~~l~~~~~~~~~~~~------~~v~~~l~~ 169 (508)
.....++.+++|+|... .++.+||.||+.+......... ..+... ....++++.
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHH
Confidence 54333445556555433 2457899999987533221110 000000 111235888
Q ss_pred cCCCcc-cccccCCCCCCccCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecC
Q 010509 170 LGLSEC-KNSLIGGPLTRGVSGGERKRVSIGQEILINPS--LLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQ 246 (508)
Q Consensus 170 lgL~~~-~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~--illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~ 246 (508)
+||.+. .++.++ +|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|.|||++|||
T Consensus 189 ~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 999865 566664 899999999999999999998 999999999999999999999999998889999999999
Q ss_pred cchHHHhhccEEEEE------eCCeEEEEcChhhHH
Q 010509 247 PSNMLYYMFHKVLLL------SEGYPLYSGEASGAM 276 (508)
Q Consensus 247 ~~~~~~~~~D~v~lL------~~G~iv~~G~~~~~~ 276 (508)
++ .+ ..||++++| ++|++++.|+++++.
T Consensus 264 ~~-~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 264 ED-TM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp HH-HH-HHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HH-HH-hhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 86 44 459999999 899999999998764
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=342.66 Aligned_cols=182 Identities=26% Similarity=0.373 Sum_probs=154.0
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEE---------EECCEeCCh------hccccEEEEecC
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRI---------TYNGKPFSN------QMTRNTGFVTQE 129 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I---------~~~G~~~~~------~~~~~i~yv~Q~ 129 (508)
.+|+|+| ++++||+++|+||||||||||||+|+|+++|++|++ .++|.++.. ..+..+++++|+
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~ 184 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQY 184 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSC
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeech
Confidence 4899999 999999999999999999999999999999999996 456765422 113458899987
Q ss_pred CCCCC---CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCC
Q 010509 130 DVLSP---YLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINP 206 (508)
Q Consensus 130 ~~l~~---~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P 206 (508)
....+ ..||.|++... .. .++++++++.+||.+..++.++ +|||||||||+||+||+.+|
T Consensus 185 ~~~~~~~~~~tv~e~l~~~------~~------~~~~~~~L~~lgL~~~~~~~~~-----~LSGGekQRvaIAraL~~~P 247 (607)
T 3bk7_A 185 VDLLPKAVKGKVRELLKKV------DE------VGKFEEVVKELELENVLDRELH-----QLSGGELQRVAIAAALLRKA 247 (607)
T ss_dssp GGGGGGTCCSBHHHHHHHT------CC------SSCHHHHHHHTTCTTGGGSBGG-----GCCHHHHHHHHHHHHHHSCC
T ss_pred hhhchhhccccHHHHhhhh------HH------HHHHHHHHHHcCCCchhCCChh-----hCCHHHHHHHHHHHHHhcCC
Confidence 43322 13899988631 10 1347789999999998888775 89999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 207 SLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 207 ~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
++|||||||+|||+.++.++++.|++++++|.|||++|||++ .+..++||+++|+++.
T Consensus 248 ~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 248 HFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVYGEP 305 (607)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEESCT
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEECCCc
Confidence 999999999999999999999999999878999999999986 5778999999998653
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=337.04 Aligned_cols=182 Identities=25% Similarity=0.342 Sum_probs=153.7
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEE---------EECCEeCCh------hccccEEEEecC
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRI---------TYNGKPFSN------QMTRNTGFVTQE 129 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I---------~~~G~~~~~------~~~~~i~yv~Q~ 129 (508)
.+|+|+| ++++||+++|+||||||||||||+|+|+++|++|++ .++|.++.. ..+..+++++|+
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~ 114 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQY 114 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSC
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhh
Confidence 4899999 999999999999999999999999999999999996 456665421 112358899997
Q ss_pred CCCCCC---CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCC
Q 010509 130 DVLSPY---LTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINP 206 (508)
Q Consensus 130 ~~l~~~---lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P 206 (508)
....+. .|+.|++... . ..++++++++.+||.+..++.++ +|||||||||+||+||+.+|
T Consensus 115 ~~~~~~~~~~~v~e~~~~~---~---------~~~~~~~~l~~lgl~~~~~~~~~-----~LSgGekQRv~iAraL~~~P 177 (538)
T 1yqt_A 115 VDLIPKAVKGKVIELLKKA---D---------ETGKLEEVVKALELENVLEREIQ-----HLSGGELQRVAIAAALLRNA 177 (538)
T ss_dssp GGGSGGGCCSBHHHHHHHH---C---------SSSCHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHHHSCC
T ss_pred hhhcchhhhccHHHHHhhh---h---------HHHHHHHHHHHcCCChhhhCChh-----hCCHHHHHHHHHHHHHhcCC
Confidence 544332 3898887531 0 11357789999999988887765 89999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 207 SLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 207 ~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
++|||||||++||+.++..+++.|++++++|.|||++|||+. .+..+|||+++|++|.
T Consensus 178 ~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~vl~~~~ 235 (538)
T 1yqt_A 178 TFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHVVYGEP 235 (538)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEET
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCcc
Confidence 999999999999999999999999999878999999999986 6788999999998653
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-36 Score=340.17 Aligned_cols=199 Identities=22% Similarity=0.306 Sum_probs=167.9
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..+...|++++|+ ++.+|+|+||++++||+++|+||||||||||||+|+| |+| +|.+..
T Consensus 434 ~~L~~~~ls~~yg-------------~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~ 492 (986)
T 2iw3_A 434 EDLCNCEFSLAYG-------------AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQ 492 (986)
T ss_dssp CEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCT
T ss_pred ceeEEeeEEEEEC-------------CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccc
Confidence 4577778888864 4679999999999999999999999999999999995 443 454432
Q ss_pred hhccccEEEEecCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCccCHHHHH
Q 010509 117 NQMTRNTGFVTQED-VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 117 ~~~~~~i~yv~Q~~-~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerq 194 (508)
.. ..++|++|+. .+++.+||.|++.+ . .. .. +++++++++.+||. +..++.++ +|||||||
T Consensus 493 ~~--~~~~~v~q~~~~~~~~ltv~e~l~~--~--~~-~~-----~~~v~~~L~~lgL~~~~~~~~~~-----~LSGGqkQ 555 (986)
T 2iw3_A 493 EE--CRTVYVEHDIDGTHSDTSVLDFVFE--S--GV-GT-----KEAIKDKLIEFGFTDEMIAMPIS-----ALSGGWKM 555 (986)
T ss_dssp TT--SCEEETTCCCCCCCTTSBHHHHHHT--T--CS-SC-----HHHHHHHHHHTTCCHHHHHSBGG-----GCCHHHHH
T ss_pred cc--eeEEEEcccccccccCCcHHHHHHH--h--hc-CH-----HHHHHHHHHHcCCChhhhcCCcc-----cCCHHHHH
Confidence 22 2478999984 67889999999975 1 11 11 45688999999995 66777775 89999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE-EEcChh
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL-YSGEAS 273 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv-~~G~~~ 273 (508)
||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||++|||+. .+.++||++++|++|+++ +.|+++
T Consensus 556 RvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~G~iv~~~G~~~ 631 (986)
T 2iw3_A 556 KLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEGLKLRKYKGNFT 631 (986)
T ss_dssp HHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEETTEEEEEESCHH
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEECCeeecCCCCHH
Confidence 99999999999999999999999999999999999998 5899999999986 577899999999999997 789998
Q ss_pred hHHH
Q 010509 274 GAMN 277 (508)
Q Consensus 274 ~~~~ 277 (508)
+...
T Consensus 632 e~~~ 635 (986)
T 2iw3_A 632 EFVK 635 (986)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=342.33 Aligned_cols=208 Identities=21% Similarity=0.307 Sum_probs=163.7
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..|+++|++++|+. ..+++|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|.
T Consensus 670 ~mL~v~nLs~~Y~g-----------~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~--- 735 (986)
T 2iw3_A 670 AIVKVTNMEFQYPG-----------TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN--- 735 (986)
T ss_dssp EEEEEEEEEECCTT-----------CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT---
T ss_pred ceEEEEeeEEEeCC-----------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc---
Confidence 46999999988641 1256899999999999999999999999999999999999999999999863
Q ss_pred hhccccEEEEecCCCC----CCCCCHHHHHHHHHHhc------------CC-----------------------------
Q 010509 117 NQMTRNTGFVTQEDVL----SPYLTVTETMVFTALLQ------------LP----------------------------- 151 (508)
Q Consensus 117 ~~~~~~i~yv~Q~~~l----~~~lTv~E~l~~~~~l~------------~~----------------------------- 151 (508)
..++|++|++.. ....|+.|++.+..... +.
T Consensus 736 ----~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~ 811 (986)
T 2iw3_A 736 ----CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKF 811 (986)
T ss_dssp ----CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEE
T ss_pred ----cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhh
Confidence 248899887521 12457777775421100 00
Q ss_pred -----------------------CCC--------C--------------------------HHHHHHHHHHHHHHcCCCc
Q 010509 152 -----------------------NSF--------T--------------------------EKEKIKCAEAVMTELGLSE 174 (508)
Q Consensus 152 -----------------------~~~--------~--------------------------~~~~~~~v~~~l~~lgL~~ 174 (508)
... + +...+++++++++.+||.+
T Consensus 812 ~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~ 891 (986)
T 2iw3_A 812 KNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDP 891 (986)
T ss_dssp TTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCH
T ss_pred cccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCc
Confidence 000 0 0001356788999999975
Q ss_pred -c-cccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHH
Q 010509 175 -C-KNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLY 252 (508)
Q Consensus 175 -~-~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~ 252 (508)
. .++.++ +|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ |.|||++|||++ .+.
T Consensus 892 ~~~~~~~~~-----~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~v~ 962 (986)
T 2iw3_A 892 EIVSHSRIR-----GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-FTK 962 (986)
T ss_dssp HHHHHSCGG-----GCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-HHT
T ss_pred hhhcCCCcc-----ccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHH-HHH
Confidence 3 466554 89999999999999999999999999999999999999999988765 579999999975 577
Q ss_pred hhccEEEEEeCCeEEEEcC
Q 010509 253 YMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 253 ~~~D~v~lL~~G~iv~~G~ 271 (508)
.+||++++|++|+++..|+
T Consensus 963 ~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 963 NLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp TTCCEEECCBTTBCCC---
T ss_pred HhCCEEEEEECCEEEEeCC
Confidence 8999999999999987774
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=322.91 Aligned_cols=196 Identities=26% Similarity=0.388 Sum_probs=150.4
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh----------------------cCCCCcccEEEECCEeCChhc--
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG----------------------GRLGRINGRITYNGKPFSNQM-- 119 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~----------------------g~~~~~~G~I~~~G~~~~~~~-- 119 (508)
+.+|+|||++|++||+++|+||||||||||+++|. |+. +.+|.|.++|.++....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~-~~~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE-HLDKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG-GCSEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc-ccCceeEeccccCCCCCCc
Confidence 45899999999999999999999999999998764 222 23467888887653100
Q ss_pred -------------------------------------------cccEEEEecCCCCCC----------------------
Q 010509 120 -------------------------------------------TRNTGFVTQEDVLSP---------------------- 134 (508)
Q Consensus 120 -------------------------------------------~~~i~yv~Q~~~l~~---------------------- 134 (508)
.+..|+++|+..++|
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 011244444433332
Q ss_pred ----------CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCccCHHHHHHHHHHHHHh
Q 010509 135 ----------YLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTRGVSGGERKRVSIGQEIL 203 (508)
Q Consensus 135 ----------~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~Ia~aL~ 203 (508)
.+||.||+.+.... . ..+++.+.++.+||.+ ..++.+ .+|||||||||+|||||+
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~-------~--~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~iAraL~ 559 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASI-------P--KIKRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELH 559 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTC-------H--HHHHHHHHHHHTTCTTSBTTCCG-----GGCCHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHh-------h--hHHHHHHHHHHcCCchhhccCCc-----hhCCHHHHHHHHHHHHHh
Confidence 47899999875321 1 2244567888999964 345444 599999999999999999
Q ss_pred hCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE------eCCeEEEEcChhh
Q 010509 204 INP---SLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL------SEGYPLYSGEASG 274 (508)
Q Consensus 204 ~~P---~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL------~~G~iv~~G~~~~ 274 (508)
.+| ++|||||||+|||+.++.++++.|++++++|+|||++|||++ .+ ..|||+++| ++|++++.|++++
T Consensus 560 ~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~i~~l~~~~g~~~G~i~~~g~~~~ 637 (670)
T 3ux8_A 560 RRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-VI-KTADYIIDLGPEGGDRGGQIVAVGTPEE 637 (670)
T ss_dssp SCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEEESSSGGGCCEEEEEECHHH
T ss_pred hCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HH-HhCCEEEEecCCcCCCCCEEEEecCHHH
Confidence 987 599999999999999999999999999888999999999986 44 569999999 8999999999988
Q ss_pred HH
Q 010509 275 AM 276 (508)
Q Consensus 275 ~~ 276 (508)
+.
T Consensus 638 ~~ 639 (670)
T 3ux8_A 638 VA 639 (670)
T ss_dssp HH
T ss_pred HH
Confidence 74
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=317.24 Aligned_cols=187 Identities=24% Similarity=0.323 Sum_probs=147.1
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEE-----------EECCEeCCh----hcccc--EEEEe
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRI-----------TYNGKPFSN----QMTRN--TGFVT 127 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I-----------~~~G~~~~~----~~~~~--i~yv~ 127 (508)
..|++++ .+++||+++|+||||||||||||+|+|+++|++|+| .+.|.++.. ...+. ..+.+
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 170 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKP 170 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEEC
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhch
Confidence 4677777 689999999999999999999999999999999998 333433211 01111 23344
Q ss_pred cCCCC------CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHH
Q 010509 128 QEDVL------SPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQE 201 (508)
Q Consensus 128 Q~~~l------~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~a 201 (508)
|.... -+..++.+.+.... .. ..++++++++.+||.+..++.++ +|||||||||+||+|
T Consensus 171 ~~~~~~~~~~~~~~~~v~~~l~~~~------~~----~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGe~Qrv~iAra 235 (608)
T 3j16_B 171 QYVDNIPRAIKGPVQKVGELLKLRM------EK----SPEDVKRYIKILQLENVLKRDIE-----KLSGGELQRFAIGMS 235 (608)
T ss_dssp CCTTTHHHHCSSSSSHHHHHHHHHC------CS----CHHHHHHHHHHHTCTGGGGSCTT-----TCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhcchhhHHHHHHhhhh------hh----HHHHHHHHHHHcCCcchhCCChH-----HCCHHHHHHHHHHHH
Confidence 43211 12235565554210 11 12568899999999998888775 899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEE
Q 010509 202 ILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLY 268 (508)
Q Consensus 202 L~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~ 268 (508)
|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+..++||+++|++|..++
T Consensus 236 L~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 236 CVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp HHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEEEESCTTTE
T ss_pred HHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcccc
Confidence 99999999999999999999999999999999888999999999986 5788999999999876554
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=313.25 Aligned_cols=174 Identities=21% Similarity=0.263 Sum_probs=141.9
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEE-----------EECCEeCChh----c--cccEEEEecCC----CC
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRI-----------TYNGKPFSNQ----M--TRNTGFVTQED----VL 132 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I-----------~~~G~~~~~~----~--~~~i~yv~Q~~----~l 132 (508)
+++||++||+||||||||||+|+|+|+++|++|+| .++|+++... . ...+....|.. .+
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKF 101 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhh
Confidence 46999999999999999999999999999999998 6777765321 1 12344444443 22
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 010509 133 SPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLD 212 (508)
Q Consensus 133 ~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLD 212 (508)
+ ..|++|++... +.+++++++++.+|+.+..++.++ +|||||||||+||+||+.+|++|+||
T Consensus 102 ~-~~~v~~~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~Qrv~iA~aL~~~p~illlD 163 (538)
T 3ozx_A 102 L-KGTVNEILTKI------------DERGKKDEVKELLNMTNLWNKDAN-----ILSGGGLQRLLVAASLLREADVYIFD 163 (538)
T ss_dssp C-CSBHHHHHHHH------------CCSSCHHHHHHHTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred c-cCcHHHHhhcc------------hhHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 3 24788765421 011346789999999998888775 89999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 213 EPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 213 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
|||++||+.++..+.+.|+++++ |+|||+++||++ .+..+||++++|++|..+
T Consensus 164 EPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~vl~~~~~~ 216 (538)
T 3ozx_A 164 QPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHIIYGESSV 216 (538)
T ss_dssp STTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEEEEEETTT
T ss_pred CCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEEecCCccc
Confidence 99999999999999999999976 999999999986 678899999999876543
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-32 Score=309.18 Aligned_cols=206 Identities=26% Similarity=0.368 Sum_probs=157.1
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHH-HhcCC-------CC-----
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTA-LGGRL-------GR----- 103 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~-L~g~~-------~~----- 103 (508)
..|+++|+++ ..|+|||++|++||+++|+|+||||||||++. |+|.+ .+
T Consensus 501 ~~L~v~~l~~------------------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~ 562 (842)
T 2vf7_A 501 GWLELNGVTR------------------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPED 562 (842)
T ss_dssp CEEEEEEEEE------------------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC--------
T ss_pred ceEEEEeeee------------------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccc
Confidence 3588888853 15999999999999999999999999999996 76542 12
Q ss_pred -------------ccc-------EEEECCEeCChhc--------------c---------ccEEE---------------
Q 010509 104 -------------ING-------RITYNGKPFSNQM--------------T---------RNTGF--------------- 125 (508)
Q Consensus 104 -------------~~G-------~I~~~G~~~~~~~--------------~---------~~i~y--------------- 125 (508)
.+| .|.++|+++.... + +..||
T Consensus 563 ~~~~~~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~ 642 (842)
T 2vf7_A 563 DEDPADHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCE 642 (842)
T ss_dssp ---------CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCT
T ss_pred cccccccccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccc
Confidence 467 6889988763211 0 11122
Q ss_pred -------EecCCCCCC--------------------------------CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 010509 126 -------VTQEDVLSP--------------------------------YLTVTETMVFTALLQLPNSFTEKEKIKCAEAV 166 (508)
Q Consensus 126 -------v~Q~~~l~~--------------------------------~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~ 166 (508)
+..+..+++ .+|+.|++.|.. . .+ ..+++.++
T Consensus 643 ~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~------~-~~--~~~~~~~~ 713 (842)
T 2vf7_A 643 HCQGEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFA------D-ES--AIFRALDT 713 (842)
T ss_dssp TTTTCSEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT------T-SH--HHHHHHHH
T ss_pred cccCCCccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhh------c-ch--HHHHHHHH
Confidence 221222222 235555554421 1 11 23467899
Q ss_pred HHHcCCCcc-cccccCCCCCCccCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEE
Q 010509 167 MTELGLSEC-KNSLIGGPLTRGVSGGERKRVSIGQEILIN---PSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVM 242 (508)
Q Consensus 167 l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~---P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~ 242 (508)
|+.+||... .++.+ ..|||||||||+||++|+.+ |++|||||||+|||+.+..++++.|++++++|.|||+
T Consensus 714 L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIv 788 (842)
T 2vf7_A 714 LREVGLGYLRLGQPA-----TELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIA 788 (842)
T ss_dssp HHHTTCTTSBTTCCG-----GGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHcCCCcccccCCc-----ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999873 45544 59999999999999999996 7999999999999999999999999999988999999
Q ss_pred EecCcchHHHhhccEEEEE------eCCeEEEEcChhhHH
Q 010509 243 TIHQPSNMLYYMFHKVLLL------SEGYPLYSGEASGAM 276 (508)
Q Consensus 243 s~H~~~~~~~~~~D~v~lL------~~G~iv~~G~~~~~~ 276 (508)
++||++ .+ ..||++++| ++|++++.|+++++.
T Consensus 789 isHdl~-~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 789 VEHKMQ-VV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp ECCCHH-HH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred EcCCHH-HH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 999986 45 789999999 799999999998764
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.98 E-value=3.8e-32 Score=307.38 Aligned_cols=195 Identities=26% Similarity=0.383 Sum_probs=153.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh-cC----C---CCcc-------c------EEEECCEeCChhc-----
Q 010509 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG-GR----L---GRIN-------G------RITYNGKPFSNQM----- 119 (508)
Q Consensus 66 iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~-g~----~---~~~~-------G------~I~~~G~~~~~~~----- 119 (508)
.|+|||++|++||+++|+|+||||||||+++|. |. + .+.. | .|.++|.++....
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 599999999999999999999999999999853 21 1 1122 3 4788887763100
Q ss_pred ------------------cccEEEEecCCCCC----------------------C-------------------------
Q 010509 120 ------------------TRNTGFVTQEDVLS----------------------P------------------------- 134 (508)
Q Consensus 120 ------------------~~~i~yv~Q~~~l~----------------------~------------------------- 134 (508)
.+.+||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 13357777743221 1
Q ss_pred -------CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCccCHHHHHHHHHHHHHhhCC
Q 010509 135 -------YLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTRGVSGGERKRVSIGQEILINP 206 (508)
Q Consensus 135 -------~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P 206 (508)
.+||.|++.|... . .. .+++.++++.+||.+ ..++.+ .+|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------I-PK--IKRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------C-HH--HHHHHHHHHHTTCSSSBTTCCG-----GGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------c-hh--HHHHHHHHHHcCCCcccccCch-----hhCCHHHHHHHHHHHHHhcCC
Confidence 4678888776421 1 11 234578999999987 556555 489999999999999999865
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE------eCCeEEEEcChhhHH
Q 010509 207 ---SLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL------SEGYPLYSGEASGAM 276 (508)
Q Consensus 207 ---~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL------~~G~iv~~G~~~~~~ 276 (508)
++|||||||+|||+.++..+++.|++++++|.|||+++||+. .+ ..||++++| ++|++++.|+++++.
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-VI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 999999999999999999999999999988999999999986 34 679999999 789999999998775
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-32 Score=307.88 Aligned_cols=197 Identities=26% Similarity=0.429 Sum_probs=153.6
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHH---------HHHhcCCC------Cccc------EEEECCEeCChh----
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLL---------TALGGRLG------RING------RITYNGKPFSNQ---- 118 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL---------~~L~g~~~------~~~G------~I~~~G~~~~~~---- 118 (508)
...|+|||+++++|++++|+|+||||||||+ +.+.+... +.+| .+.+++.++...
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 3469999999999999999999999999997 44444322 2223 355555443210
Q ss_pred -----------------------------------------ccccEEEEecCCCCCCC----------------------
Q 010509 119 -----------------------------------------MTRNTGFVTQEDVLSPY---------------------- 135 (508)
Q Consensus 119 -----------------------------------------~~~~i~yv~Q~~~l~~~---------------------- 135 (508)
..+..|++.|+..++|.
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 01235788888766653
Q ss_pred ----------CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-ccccCCCCCCccCHHHHHHHHHHHHHhh
Q 010509 136 ----------LTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK-NSLIGGPLTRGVSGGERKRVSIGQEILI 204 (508)
Q Consensus 136 ----------lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~LSGGerqRv~Ia~aL~~ 204 (508)
+||.|++.|.... ...+++.++|+.+||.... ++ .+.+|||||||||+||++|+.
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~lgq-----~~~~LSGGErQRV~LAraL~~ 822 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVKLGQ-----PATTLSGGEAQRIKLASELRK 822 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSBTTC-----CSTTCCHHHHHHHHHHHHHTS
T ss_pred ccCCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhhccC-----CccCCCHHHHHHHHHHHHHhh
Confidence 6788888775321 1234677899999997532 33 345899999999999999998
Q ss_pred CC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE------eCCeEEEEcChhhH
Q 010509 205 NP---SLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL------SEGYPLYSGEASGA 275 (508)
Q Consensus 205 ~P---~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL------~~G~iv~~G~~~~~ 275 (508)
+| ++|||||||+|||+.+...+++.|++++++|.|||+++||++ .+ ..||+|++| ++|++++.|+++++
T Consensus 823 ~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~-~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel 900 (916)
T 3pih_A 823 RDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD-VI-KNADHIIDLGPEGGKEGGYIVATGTPEEI 900 (916)
T ss_dssp CCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEEESSSGGGCCEEEEEESHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEecCCCCCCCCEEEEEcCHHHH
Confidence 75 799999999999999999999999999988999999999986 45 559999999 89999999999987
Q ss_pred H
Q 010509 276 M 276 (508)
Q Consensus 276 ~ 276 (508)
.
T Consensus 901 ~ 901 (916)
T 3pih_A 901 A 901 (916)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-30 Score=268.45 Aligned_cols=201 Identities=20% Similarity=0.262 Sum_probs=147.1
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC--------------------------------------Cccc
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG--------------------------------------RING 106 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~--------------------------------------~~~G 106 (508)
.+++++|+++++| +++|+|||||||||||++|+++.+ +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4789999999999 999999999999999999977653 3478
Q ss_pred EEEECCEeCCh----hc-cccEEEEecCCCCCCCCCHHHHHHHHHHhc-----------------------CCCCCC---
Q 010509 107 RITYNGKPFSN----QM-TRNTGFVTQEDVLSPYLTVTETMVFTALLQ-----------------------LPNSFT--- 155 (508)
Q Consensus 107 ~I~~~G~~~~~----~~-~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~-----------------------~~~~~~--- 155 (508)
++.+||++++. .. +..+++++|++.++.. +..+...|.-... +.....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 89999999864 22 3348999999876543 5554443321110 000000
Q ss_pred -------------------------------HHHHHHHHHHHHHHcCCCccc----------------cc---ccCC---
Q 010509 156 -------------------------------EKEKIKCAEAVMTELGLSECK----------------NS---LIGG--- 182 (508)
Q Consensus 156 -------------------------------~~~~~~~v~~~l~~lgL~~~~----------------~~---~vg~--- 182 (508)
.+...+.+++.++.+++.+.. ++ .+..
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 001123455566667665311 00 1110
Q ss_pred ---CCCCc-cCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhcc
Q 010509 183 ---PLTRG-VSGGERKRVSIGQEILINP--SLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFH 256 (508)
Q Consensus 183 ---~~~~~-LSGGerqRv~Ia~aL~~~P--~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D 256 (508)
...+. ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||++||++. +...||
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~--~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ--IAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH--HHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH--HHhhcC
Confidence 11122 6999999999999999999 9999999999999999999999999998 5899999999984 447899
Q ss_pred EEEEE----eCCeEEEEc
Q 010509 257 KVLLL----SEGYPLYSG 270 (508)
Q Consensus 257 ~v~lL----~~G~iv~~G 270 (508)
++++| ++|+++...
T Consensus 364 ~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 364 HHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEEEEETTEEEEEE
T ss_pred eEEEEEEeccCCceEEEE
Confidence 99999 999987654
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-33 Score=298.02 Aligned_cols=185 Identities=14% Similarity=0.103 Sum_probs=150.6
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCccc-E-EEECCEeCChhccccEEEEecCCC---CCCCCCHHHHH
Q 010509 68 KGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRING-R-ITYNGKPFSNQMTRNTGFVTQEDV---LSPYLTVTETM 142 (508)
Q Consensus 68 ~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G-~-I~~~G~~~~~~~~~~i~yv~Q~~~---l~~~lTv~E~l 142 (508)
.++|+++++|++++|+||||||||||+|+|+|+..|++| + |.++|. .++.++|+||+.. +.+.+|++||+
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~-----~~~~i~~vpq~~~l~~~~~~~tv~eni 203 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD-----PQQPIFTVPGCISATPISDILDAQLPT 203 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC-----TTSCSSSCSSCCEEEECCSCCCTTCTT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC-----ccCCeeeeccchhhcccccccchhhhh
Confidence 478999999999999999999999999999999999999 9 999983 3567999999984 45568999988
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHH--HhhCCCE----EEEeC-CC
Q 010509 143 VFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQE--ILINPSL----LFLDE-PT 215 (508)
Q Consensus 143 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~a--L~~~P~i----llLDE-Pt 215 (508)
|+....... . ..++++++++.+|+.+..+ . ++|||||||||+||++ |+.+|++ ||||| ||
T Consensus 204 -~~~~~~~~~--~---~~~~~~~ll~~~gl~~~~~--~-----~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPt 270 (460)
T 2npi_A 204 -WGQSLTSGA--T---LLHNKQPMVKNFGLERINE--N-----KDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSI 270 (460)
T ss_dssp -CSCBCBSSC--C---SSCCBCCEECCCCSSSGGG--C-----HHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCG
T ss_pred -cccccccCc--c---hHHHHHHHHHHhCCCcccc--h-----hhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcc
Confidence 653321110 0 1234556788889987665 2 4899999999999999 9999999 99999 99
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcc--h---HHHhhccE-----EEEEe-CCeEEEEcChhhH
Q 010509 216 SGLDSTIAQQILSILLKLANGGRTIVMTIHQPS--N---MLYYMFHK-----VLLLS-EGYPLYSGEASGA 275 (508)
Q Consensus 216 sgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~--~---~~~~~~D~-----v~lL~-~G~iv~~G~~~~~ 275 (508)
++||+. ...+.+++++ .|+|+|+++|+.+ . .+.+++|+ +++|+ +|+++ .|++++.
T Consensus 271 s~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 271 SQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp GGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred cccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 999999 5555555544 3789999999976 1 45688999 99999 99999 9988755
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-31 Score=255.12 Aligned_cols=144 Identities=19% Similarity=0.278 Sum_probs=106.4
Q ss_pred cccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC---hhccccEEEEecCCCCCCC
Q 010509 59 KKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS---NQMTRNTGFVTQEDVLSPY 135 (508)
Q Consensus 59 ~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~---~~~~~~i~yv~Q~~~l~~~ 135 (508)
|+++++.+|+|+ ++||+++|+||||||||||+|+|+|+ +|++|+|.. .++. ...++.+||++|++
T Consensus 8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~----- 75 (208)
T 3b85_A 8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTRPAVEAGEKLGFLPGTL----- 75 (208)
T ss_dssp CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEECSCCTTCCCCSSCC-------
T ss_pred CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecCCchhhhcceEEecCCH-----
Confidence 345567899996 89999999999999999999999999 999999943 2221 13466799999975
Q ss_pred CCHHHHH-HHHH----HhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEE
Q 010509 136 LTVTETM-VFTA----LLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLF 210 (508)
Q Consensus 136 lTv~E~l-~~~~----~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~ill 210 (508)
+||+ .+.. ... .... .++++++++. |+ ||||||+|||+|+.+|++||
T Consensus 76 ---~enl~~~~~~~~~~~~--~~~~----~~~~~~~l~~-gl------------------Gq~qrv~lAraL~~~p~lll 127 (208)
T 3b85_A 76 ---NEKIDPYLRPLHDALR--DMVE----PEVIPKLMEA-GI------------------VEVAPLAYMRGRTLNDAFVI 127 (208)
T ss_dssp -------CTTTHHHHHHHT--TTSC----TTHHHHHHHT-TS------------------EEEEEGGGGTTCCBCSEEEE
T ss_pred ---HHHHHHHHHHHHHHHH--Hhcc----HHHHHHHHHh-CC------------------chHHHHHHHHHHhcCCCEEE
Confidence 4444 2211 111 0001 1235555553 22 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcc
Q 010509 211 LDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPS 248 (508)
Q Consensus 211 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~ 248 (508)
|||||+| ++..+++.|+++ ++|+||| +|||++
T Consensus 128 LDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 128 LDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp ECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred EeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 9999999 899999999998 6799999 999975
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-27 Score=243.15 Aligned_cols=83 Identities=30% Similarity=0.423 Sum_probs=76.4
Q ss_pred CCCccCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccE
Q 010509 184 LTRGVSGGERKRVSIGQEIL------INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHK 257 (508)
Q Consensus 184 ~~~~LSGGerqRv~Ia~aL~------~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~ 257 (508)
.+.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|++++++|.|||++|||++ . ...+|+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~-~-~~~~d~ 353 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE-F-SEAFDR 353 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH-H-HTTCSC
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH-H-HHhCCE
Confidence 35689999999999999999 699999999999999999999999999999888999999999986 3 577999
Q ss_pred EEEEeCCeEEE
Q 010509 258 VLLLSEGYPLY 268 (508)
Q Consensus 258 v~lL~~G~iv~ 268 (508)
+++|++|+++.
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999874
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-26 Score=235.13 Aligned_cols=88 Identities=18% Similarity=0.204 Sum_probs=73.3
Q ss_pred CCccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEE--
Q 010509 185 TRGVSGGERKRVSIGQEIL----INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKV-- 258 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~----~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v-- 258 (508)
+..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|++++ +|.|||++||++. +...+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~ 293 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHG 293 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEE
Confidence 4589999999999999997 5789999999999999999999999999985 5899999999964 56789987
Q ss_pred EEEeCCeE-EEEcChhhH
Q 010509 259 LLLSEGYP-LYSGEASGA 275 (508)
Q Consensus 259 ~lL~~G~i-v~~G~~~~~ 275 (508)
++|.+|+. +...+.+++
T Consensus 294 v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 294 VTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp EEESSSCEEEEECCC---
T ss_pred EEEeCCEEEEEEEEcchh
Confidence 77887754 455555553
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-27 Score=218.66 Aligned_cols=145 Identities=14% Similarity=0.156 Sum_probs=101.9
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHh
Q 010509 69 GITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALL 148 (508)
Q Consensus 69 ~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l 148 (508)
||||++++||+++|+||||||||||+|++.+- ...+++. .. .++++|++.- ..+.+..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~------~~~~~~d----~~---~g~~~~~~~~---~~~~~~~------ 58 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKP------TEVISSD----FC---RGLMSDDEND---QTVTGAA------ 58 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCG------GGEEEHH----HH---HHHHCSSTTC---GGGHHHH------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccC------CeEEccH----HH---HHHhcCcccc---hhhHHHH------
Confidence 68999999999999999999999999996531 1112111 11 2566776421 1111100
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-------
Q 010509 149 QLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDST------- 221 (508)
Q Consensus 149 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~------- 221 (508)
.+......+ .....|.....+.. ...|||||||++||++++.+|++++|||||++||+.
T Consensus 59 -------~~~~~~~~~-~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~ 124 (171)
T 4gp7_A 59 -------FDVLHYIVS-KRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDR 124 (171)
T ss_dssp -------HHHHHHHHH-HHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSC
T ss_pred -------HHHHHHHHH-HHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCC
Confidence 001111111 22234555444432 246999999999999999999999999999999999
Q ss_pred ---------HHHHHHHHHHHHHcCCCEEEEEecCcch
Q 010509 222 ---------IAQQILSILLKLANGGRTIVMTIHQPSN 249 (508)
Q Consensus 222 ---------~~~~i~~~L~~l~~~g~tii~s~H~~~~ 249 (508)
.+.++.+.|++++++|.|+|++||+++.
T Consensus 125 ~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~ 161 (171)
T 4gp7_A 125 QVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEE 161 (171)
T ss_dssp CCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHH
T ss_pred CCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHH
Confidence 5688999999988779999999999863
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.5e-29 Score=261.43 Aligned_cols=176 Identities=13% Similarity=0.133 Sum_probs=141.6
Q ss_pred ceeeeceEEEEeCCe--------------------EEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccE
Q 010509 64 KAILKGITGMVKPGE--------------------MLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNT 123 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge--------------------~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i 123 (508)
+.+|+|||+++++|+ ++||+||||||||||+|+|+|+.+|++|+|.++|.+.+ + .
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t---~--~ 110 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT---M--E 110 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-------C--C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc---e--e
Confidence 568999999999999 99999999999999999999999999999999998753 2 2
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH--HHHHHHHHHH
Q 010509 124 GFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG--ERKRVSIGQE 201 (508)
Q Consensus 124 ~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG--erqRv~Ia~a 201 (508)
+|++|++ .++.+|+.|++.+.. + +.+++++++.+++.+.. ..+ .+||| ||||+.||++
T Consensus 111 ~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~-~~~------~lS~G~~~kqrv~la~a 170 (413)
T 1tq4_A 111 RHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYD-FFI------IISATRFKKNDIDIAKA 170 (413)
T ss_dssp CEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCS-EEE------EEESSCCCHHHHHHHHH
T ss_pred EEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccC-CeE------EeCCCCccHHHHHHHHH
Confidence 7899985 577889998875431 1 12467889999987653 222 39999 9999999999
Q ss_pred Hhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----cC----CCEEEEEecCcch-HHHhhccEEE-E
Q 010509 202 ILI----------NPSLLFLDEPTSGLDSTIAQQILSILLKLA-----NG----GRTIVMTIHQPSN-MLYYMFHKVL-L 260 (508)
Q Consensus 202 L~~----------~P~illLDEPtsgLD~~~~~~i~~~L~~l~-----~~----g~tii~s~H~~~~-~~~~~~D~v~-l 260 (508)
|+. +|++++|||||+|||+.++.++++.++++. +. ..+|++++|+.+. .+.+++|++. .
T Consensus 171 L~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~ 250 (413)
T 1tq4_A 171 ISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISD 250 (413)
T ss_dssp HHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHH
T ss_pred HHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHh
Confidence 999 999999999999999999999999999984 32 3678999998763 2566677653 3
Q ss_pred EeCC
Q 010509 261 LSEG 264 (508)
Q Consensus 261 L~~G 264 (508)
|.+|
T Consensus 251 Lpeg 254 (413)
T 1tq4_A 251 LPIY 254 (413)
T ss_dssp SCGG
T ss_pred Cccc
Confidence 4444
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.2e-29 Score=238.49 Aligned_cols=180 Identities=16% Similarity=0.151 Sum_probs=124.3
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHH
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETM 142 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l 142 (508)
.+.+++| .++++||+++|+||||||||||+|+|+|+++...+.+.+.+.+.....++.++|++|++.+++.+|+.|++
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l 85 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGEL 85 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCE
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCc
Confidence 4568888 79999999999999999999999999998853333322222222222356799999998888888887776
Q ss_pred HHHHHh----cCCCCCCHHHHHHHHHHH------HHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 010509 143 VFTALL----QLPNSFTEKEKIKCAEAV------MTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLD 212 (508)
Q Consensus 143 ~~~~~l----~~~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLD 212 (508)
...... .. ...++++.++++++. ++.+|+.+.+++.+ +.|| +|+.+|++++||
T Consensus 86 ~~~~~~~~n~~~-~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~~LD 148 (207)
T 1znw_A 86 LEWAEIHGGLHR-SGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQDLQ 148 (207)
T ss_dssp EEEEEEGGGTEE-EEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHHHHH
T ss_pred eeehhhcCchhh-cCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHHHHH
Confidence 321100 10 022344555666665 66666666666554 3677 899999999999
Q ss_pred CCCCCC----CHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 213 EPTSGL----DSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 213 EPtsgL----D~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
|||+|+ |+..+.++.+.++++++ .|.|+|++|||++ ++.++|||+++|.
T Consensus 149 ep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~ 202 (207)
T 1znw_A 149 ARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGT 202 (207)
T ss_dssp HHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC--
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhc
Confidence 999998 78899999999999975 5899999999986 5788999999985
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-25 Score=210.27 Aligned_cols=144 Identities=19% Similarity=0.173 Sum_probs=102.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSF 154 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~ 154 (508)
.++|+||||||||||+|+|+|+++ |.++|.+... ..++.+||++|+. ++.+++ + +... .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~----~ 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF----F 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETT----C
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-Hhhc----C
Confidence 589999999999999999999874 4455543311 3456799999975 222332 1 1110 0
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHHH
Q 010509 155 TEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQE-----ILINPSLLFLDE--PTSGLDSTIAQQIL 227 (508)
Q Consensus 155 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~a-----L~~~P~illLDE--PtsgLD~~~~~~i~ 227 (508)
. -.+..++. +..||||||||++||++ |+.+|++++||| ||++||+.....+.
T Consensus 65 ~----------------~~~~~~~~-----~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~ 123 (178)
T 1ye8_A 65 T----------------SKKLVGSY-----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVR 123 (178)
T ss_dssp C----------------CSSEETTE-----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHH
T ss_pred C----------------cccccccc-----ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHH
Confidence 0 00223333 34899999999999996 999999999999 99999999999998
Q ss_pred HHHHHHHcCCCEEEEEec---CcchHHHhhccEEEEEeCCeEEE
Q 010509 228 SILLKLANGGRTIVMTIH---QPSNMLYYMFHKVLLLSEGYPLY 268 (508)
Q Consensus 228 ~~L~~l~~~g~tii~s~H---~~~~~~~~~~D~v~lL~~G~iv~ 268 (508)
+.+++ .+.|+|+++| +. ..+..++|| .+|+++.
T Consensus 124 ~~l~~---~~~~~i~~~H~~h~~-~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 124 QIMHD---PNVNVVATIPIRDVH-PLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHTC---TTSEEEEECCSSCCS-HHHHHHHTC----TTCEEEE
T ss_pred HHHhc---CCCeEEEEEccCCCc-hHHHHHHhc----CCcEEEE
Confidence 88865 4777888886 54 467788887 5567664
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-25 Score=225.96 Aligned_cols=173 Identities=16% Similarity=0.143 Sum_probs=137.6
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--------hc--cccEEEEecCCC-CCCC
Q 010509 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--------QM--TRNTGFVTQEDV-LSPY 135 (508)
Q Consensus 67 L~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--------~~--~~~i~yv~Q~~~-l~~~ 135 (508)
++++|+++++|++++|+||||||||||++.|+|+++|.+|+|.++|.+..+ .+ ++.++|++|++. ++|.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 457899999999999999999999999999999998899999999988742 12 346999999988 8899
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCC--EEEEeC
Q 010509 136 LTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPS--LLFLDE 213 (508)
Q Consensus 136 lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~--illLDE 213 (508)
+|++|++.++... ... ..+++.+|+.+..+++++ +|| |||++||++|+.+|+ +|+||
T Consensus 170 ~~v~e~l~~~~~~----~~d--------~~lldt~gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvLD- 228 (302)
T 3b9q_A 170 TVLSKAVKRGKEE----GYD--------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVLD- 228 (302)
T ss_dssp HHHHHHHHHHHHT----TCS--------EEEECCCCCSSCCHHHHH-----HHH---HHHHHHHTTSTTCCSEEEEEEE-
T ss_pred HHHHHHHHHHHHc----CCc--------chHHhcCCCCcchhHHHH-----HHH---HHHHHHHHhhccCCCeeEEEEe-
Confidence 9999999876421 110 135677888877776664 899 999999999999999 99999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcc--------hHHHhhccEEEEEeCCeE
Q 010509 214 PTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPS--------NMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 214 PtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~--------~~~~~~~D~v~lL~~G~i 266 (508)
||+|||+..+ ++++.+ .|.|+|++||... +......+.|..+..|+.
T Consensus 229 ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 229 GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9999998865 345543 5899999999322 234456678888888864
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-27 Score=239.83 Aligned_cols=168 Identities=17% Similarity=0.207 Sum_probs=129.3
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChh
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ 118 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~ 118 (508)
|+++||++.+. +.+|+|+|+++++||+++|+||||||||||+++|+|++ +|+|.
T Consensus 102 i~~~~vs~~y~--------------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~--------- 155 (305)
T 2v9p_A 102 FNYQNIELITF--------------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL--------- 155 (305)
T ss_dssp HHHTTCCHHHH--------------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE---------
T ss_pred EEEEEEEEEcC--------------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE---------
Confidence 66677766542 45899999999999999999999999999999999987 78883
Q ss_pred ccccEEEEecCCCCCCCCCHHH-HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHH
Q 010509 119 MTRNTGFVTQEDVLSPYLTVTE-TMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVS 197 (508)
Q Consensus 119 ~~~~i~yv~Q~~~l~~~lTv~E-~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 197 (508)
+|++|++.+++. |++| |+.+.. ..++ .+.+.++.+ |.+..| | ..||||||||
T Consensus 156 -----~~v~q~~~lf~~-ti~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld---g----~~LSgGqkQR-- 208 (305)
T 2v9p_A 156 -----SFANHKSHFWLA-SLADTRAALVD------DATH-----ACWRYFDTY-LRNALD---G----YPVSIDRKHK-- 208 (305)
T ss_dssp -----CGGGTTSGGGGG-GGTTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG---T----CCEECCCSSC--
T ss_pred -----EEecCccccccc-cHHHHhhccCc------cccH-----HHHHHHHHH-hHccCC---c----cCcCHHHHHH--
Confidence 467788777764 7776 665531 1121 344555554 444444 3 4899999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHHH
Q 010509 198 IGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMN 277 (508)
Q Consensus 198 Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~ 277 (508)
||||+.+|+||| ||+||+.+...+.. .+|+++ ....+|++ +|++|++++.|+.++...
T Consensus 209 -ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~el~~ 266 (305)
T 2v9p_A 209 -AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDESGEQPFNITDADWKS 266 (305)
T ss_dssp -CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEE--EEECCCCC-CCC---CCCCCCHHHHHH
T ss_pred -HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHHHHH
Confidence 999999999999 99999999888862 189886 34789999 999999999999999877
Q ss_pred HHHh
Q 010509 278 YFAS 281 (508)
Q Consensus 278 ~f~~ 281 (508)
+|.+
T Consensus 267 ~y~~ 270 (305)
T 2v9p_A 267 FFVR 270 (305)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-25 Score=221.12 Aligned_cols=147 Identities=19% Similarity=0.179 Sum_probs=99.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHH
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN-QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEK 157 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~-~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~ 157 (508)
.++|+||||||||||+|+|+|+..|++|+|.++|+++.. ..++.++|++|++.+++.+||.||+.|+..... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~~-- 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--ENC-- 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TTC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HHH--
Confidence 479999999999999999999999999999999998754 345679999999999999999999988753321 111
Q ss_pred HHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCC
Q 010509 158 EKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGG 237 (508)
Q Consensus 158 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g 237 (508)
.+.+.+.++ .+..+... .+||||||||+++||+++. ++++|||+.|||+.. .+.++++++.
T Consensus 80 --~~~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~- 140 (270)
T 3sop_A 80 --WEPIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV- 140 (270)
T ss_dssp --SHHHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-
T ss_pred --HHHHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-
Confidence 122333333 33444444 3899999999999999876 999999999999987 5666677666
Q ss_pred CEEEEEecCcc
Q 010509 238 RTIVMTIHQPS 248 (508)
Q Consensus 238 ~tii~s~H~~~ 248 (508)
.+||+++|..+
T Consensus 141 ~~vI~Vi~K~D 151 (270)
T 3sop_A 141 VNIIPVIAKAD 151 (270)
T ss_dssp SEEEEEETTGG
T ss_pred CcEEEEEeccc
Confidence 89999998753
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.9e-26 Score=240.67 Aligned_cols=191 Identities=13% Similarity=0.099 Sum_probs=150.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCE---e
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGK---P 114 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~---~ 114 (508)
.++++|+++.+. .+.++|+++ +.+.+||+++|+||||||||||+++|+|+.++++|.|.++|+ +
T Consensus 131 ~l~~~~v~~~~~------------tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~e 197 (438)
T 2dpy_A 131 PLQRTPIEHVLD------------TGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGRE 197 (438)
T ss_dssp TTTSCCCCSBCC------------CSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHH
T ss_pred ceEEeccceecC------------CCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHH
Confidence 456666665542 135699999 999999999999999999999999999999999999999998 4
Q ss_pred CCh---------hccccEEEEecC-CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCC
Q 010509 115 FSN---------QMTRNTGFVTQE-DVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPL 184 (508)
Q Consensus 115 ~~~---------~~~~~i~yv~Q~-~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 184 (508)
+.. ..++.++|++|+ +.+++.+|+.+|+.+.+..... ..+ ......|.
T Consensus 198 v~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~-------~~~---------~v~~~ld~------ 255 (438)
T 2dpy_A 198 VKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRD-------RGQ---------HVLLIMDS------ 255 (438)
T ss_dssp HHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT-------TTC---------EEEEEEEC------
T ss_pred HHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh-------CCC---------CHHHHHHh------
Confidence 422 245779999995 5567788999998876542100 000 01111121
Q ss_pred CCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc---C-CC-----EEEEEecCcchHHHhhc
Q 010509 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN---G-GR-----TIVMTIHQPSNMLYYMF 255 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~---~-g~-----tii~s~H~~~~~~~~~~ 255 (508)
...+|+|| ||++|| +.+|++ |+|||+.+...+.+.++++.+ + |. ||++++||++ ...+
T Consensus 256 l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~ia 322 (438)
T 2dpy_A 256 LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIA 322 (438)
T ss_dssp HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHH
T ss_pred HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhh
Confidence 24799999 999999 889988 999999999999999999876 3 74 9999999997 3678
Q ss_pred cEEEEEeCCeEEEEcChhhHH
Q 010509 256 HKVLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 256 D~v~lL~~G~iv~~G~~~~~~ 276 (508)
|++++|.+|+++..|++.+..
T Consensus 323 d~v~~l~dG~Ivl~~~~~~~~ 343 (438)
T 2dpy_A 323 DSARAILDGHIVLSRRLAEAG 343 (438)
T ss_dssp HHHHHHSSEEEEECHHHHHTT
T ss_pred ceEEEEeCcEEEEeCCHHHcc
Confidence 999999999999999876653
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-24 Score=223.81 Aligned_cols=172 Identities=16% Similarity=0.150 Sum_probs=138.1
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--------hc--cccEEEEecCCC-CCCCC
Q 010509 68 KGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--------QM--TRNTGFVTQEDV-LSPYL 136 (508)
Q Consensus 68 ~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--------~~--~~~i~yv~Q~~~-l~~~l 136 (508)
+++|+++++|++++|+||||||||||++.|+|++++.+|+|.++|.++.+ .+ ++.++|++|++. ++|.+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 46889999999999999999999999999999998889999999988742 11 347999999988 88999
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCC--EEEEeCC
Q 010509 137 TVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPS--LLFLDEP 214 (508)
Q Consensus 137 Tv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~--illLDEP 214 (508)
|++|++.++... ... ..+++.+|+.+..+.++. +|| |||++||++|+.+|+ +|+|| |
T Consensus 228 tv~e~l~~~~~~----~~d--------~~lldt~Gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvLD-p 286 (359)
T 2og2_A 228 VLSKAVKRGKEE----GYD--------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVLD-G 286 (359)
T ss_dssp HHHHHHHHHHHT----TCS--------EEEEECCCCSSCCHHHHH-----HHH---HHHHHHHHHSTTCCSEEEEEEE-G
T ss_pred hHHHHHHHHHhC----CCH--------HHHHHhcCCChhhhhHHH-----HHH---HHHHHHHHHHhcCCCceEEEEc-C
Confidence 999999876421 110 135667888877776664 899 999999999999999 99999 9
Q ss_pred CCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcc--------hHHHhhccEEEEEeCCeE
Q 010509 215 TSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPS--------NMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 215 tsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~--------~~~~~~~D~v~lL~~G~i 266 (508)
|+|||+.++. +++.+ .|.|+|++||.-. +......+.|..+..|+.
T Consensus 287 ttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 287 NTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9999988653 44543 5899999999311 234456678888888864
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.4e-24 Score=217.39 Aligned_cols=131 Identities=18% Similarity=0.217 Sum_probs=108.7
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--hccccEEEEecCCCCCCCCCHHHHHH
Q 010509 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--QMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 66 iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
+++++|+.+++|++++|+||||||||||+++|+|+++|++|.|.++|.+... ..++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~---------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFF---------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEEC----------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEe----------------
Confidence 7899999999999999999999999999999999999999999999864211 1222333332
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 010509 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIA 223 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~ 223 (508)
+ |||+||++||++|..+|++|++||||+
T Consensus 224 -------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~------- 251 (330)
T 2pt7_A 224 -------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS------- 251 (330)
T ss_dssp -------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-------
T ss_pred -------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-------
Confidence 1 899999999999999999999999998
Q ss_pred HHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 224 QQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 224 ~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.++.+.|+.+...+.|+|+++|+++ ..+.+||+++|.+|+.
T Consensus 252 ~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 252 SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 2456778777654568999999987 5578999999998853
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-22 Score=227.68 Aligned_cols=163 Identities=21% Similarity=0.330 Sum_probs=127.4
Q ss_pred HHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCC-C--H--HHHHHHHHHHH
Q 010509 93 LLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSF-T--E--KEKIKCAEAVM 167 (508)
Q Consensus 93 LL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~-~--~--~~~~~~v~~~l 167 (508)
...|..+++++..|+|.++|+++.. +..+|+.|++.|.....+.... . . .+..++..+.|
T Consensus 384 C~~C~g~rl~~~~~~V~i~G~~i~~---------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L 448 (916)
T 3pih_A 384 CSVCGGRRLNREALSVKINGLNIHE---------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFL 448 (916)
T ss_dssp CTTTCSCCBCTTGGGEEETTEEHHH---------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHH
T ss_pred chhcccccCChHhcCcEECCccHHH---------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHH
Confidence 3455556778999999999998743 2346788888775443322110 0 0 01112345678
Q ss_pred HHcCCCcc-cccccCCCCCCccCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEe
Q 010509 168 TELGLSEC-KNSLIGGPLTRGVSGGERKRVSIGQEILINPS--LLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTI 244 (508)
Q Consensus 168 ~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~--illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~ 244 (508)
+.+||.+. .++.++ +|||||||||.||++|+.+|+ +|+|||||+|||+.....+++.|++++++|.|||+++
T Consensus 449 ~~vgL~~l~l~r~~~-----~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVt 523 (916)
T 3pih_A 449 VDVGLEYLTLSRSAT-----TLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVE 523 (916)
T ss_dssp HTTTCTTCBTTSBGG-----GCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEEC
T ss_pred HHcCCccccccCCcc-----cCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 88999764 466654 899999999999999999887 9999999999999999999999999988899999999
Q ss_pred cCcchHHHhhccEEEEE------eCCeEEEEcChhhHHH
Q 010509 245 HQPSNMLYYMFHKVLLL------SEGYPLYSGEASGAMN 277 (508)
Q Consensus 245 H~~~~~~~~~~D~v~lL------~~G~iv~~G~~~~~~~ 277 (508)
||+. .+ ..+|++++| ++|++++.|+++++.+
T Consensus 524 Hd~~-~~-~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 524 HDEE-VI-RNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp CCHH-HH-HTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred CCHH-HH-HhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 9985 45 459999999 8999999999988753
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-23 Score=207.22 Aligned_cols=184 Identities=12% Similarity=0.116 Sum_probs=124.3
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCccc-EEEECCEeCCh-hccccEEEEecCCCCCCCCCHHHH
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRING-RITYNGKPFSN-QMTRNTGFVTQEDVLSPYLTVTET 141 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G-~I~~~G~~~~~-~~~~~i~yv~Q~~~l~~~lTv~E~ 141 (508)
..+|+++++.+++|++++|+||||||||||++.|+|...+.+| .|.+.+.+.+. ..++++..+.|+.. +++.++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~~ 97 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSDS 97 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCHH
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhccc
Confidence 4579999999999999999999999999999999999877767 67655443332 23333333333321 123334
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH-HHHHHHHHHHhhCCCEEEEeCCCC---C
Q 010509 142 MVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE-RKRVSIGQEILINPSLLFLDEPTS---G 217 (508)
Q Consensus 142 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe-rqRv~Ia~aL~~~P~illLDEPts---g 217 (508)
+.... + ++++..+.++++++..++. ..+ . +..+|.+| +||+. |+++..+|+++++||||+ +
T Consensus 98 l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~-~-----~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~ 162 (296)
T 1cr0_A 98 LKREI-I------ENGKFDQWFDELFGNDTFH-LYD-S-----FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSA 162 (296)
T ss_dssp HHHHH-H------HHTHHHHHHHHHHSSSCEE-EEC-C-----CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----
T ss_pred cccCC-C------CHHHHHHHHHHHhccCCEE-EEC-C-----CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCC
Confidence 43221 1 1223334455555433331 111 1 23688998 67777 999999999999999999 5
Q ss_pred ---CCH-HHHHHHHHHHHHHHcC-CCEEEEEecCcc-h--------------------HHHhhccEEEEEeCCeE
Q 010509 218 ---LDS-TIAQQILSILLKLANG-GRTIVMTIHQPS-N--------------------MLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 218 ---LD~-~~~~~i~~~L~~l~~~-g~tii~s~H~~~-~--------------------~~~~~~D~v~lL~~G~i 266 (508)
+|. ....++++.|++++++ |.|||+++|+.. . .+.+.||+|++|++|+.
T Consensus 163 ~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 163 SGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 565 6778899999999865 999999999962 2 57789999999998864
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.4e-22 Score=204.49 Aligned_cols=85 Identities=19% Similarity=0.123 Sum_probs=76.8
Q ss_pred CCCC-ccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHH
Q 010509 183 PLTR-GVSGGERKRVSIGQEIL---------INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLY 252 (508)
Q Consensus 183 ~~~~-~LSGGerqRv~Ia~aL~---------~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~ 252 (508)
..++ .+|||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. +.
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~--- 332 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP--- 332 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT---
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc---
Confidence 3455 79999999999999999 8999999999999999999999999999874 699999994 42
Q ss_pred hhccEEEEEeCCeEEEEcChhhH
Q 010509 253 YMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 253 ~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
.+|++++|++|+++..|+++++
T Consensus 333 -~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 -GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp -TCSEEEEEETTEEEECCCTTTS
T ss_pred -cCCEEEEEECCEEEecCCHHHH
Confidence 7899999999999999998765
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-26 Score=222.13 Aligned_cols=164 Identities=12% Similarity=0.050 Sum_probs=107.3
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-----hccccEEEEecCCCCCCCCCH
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN-----QMTRNTGFVTQEDVLSPYLTV 138 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~-----~~~~~i~yv~Q~~~l~~~lTv 138 (508)
..-|+||||++++|++++|+||||||||||+++|+|+. | |+|.+ |.+... ..++.++|++|++.+++.++.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence 45799999999999999999999999999999999988 5 99999 776522 234678999998766554321
Q ss_pred -HHHHHH---HHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHH-----HHHHhhCCCEE
Q 010509 139 -TETMVF---TALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSI-----GQEILINPSLL 209 (508)
Q Consensus 139 -~E~l~~---~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I-----a~aL~~~P~il 209 (508)
.+++.+ ..... +.+. +.++++++...+. ..+ ..+|||||||++| +++++.+|+++
T Consensus 86 ~~~~l~~~~~~~~~~---g~~~----~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~ 149 (218)
T 1z6g_A 86 NEDFLEYDNYANNFY---GTLK----SEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTD 149 (218)
T ss_dssp TTCEEEEEEETTEEE---EEEH----HHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHH
T ss_pred ccchhhhhhcccccC---CCcH----HHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHH
Confidence 111111 01100 1122 2356666653321 111 3799999999999 89999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHc-------CCCEEEEEecCc
Q 010509 210 FLDEPTSGLDSTIAQQILSILLKLAN-------GGRTIVMTIHQP 247 (508)
Q Consensus 210 lLDEPtsgLD~~~~~~i~~~L~~l~~-------~g~tii~s~H~~ 247 (508)
+|||||+++|..+...+.+.|+++.+ .+.+.|+++|++
T Consensus 150 ~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~ 194 (218)
T 1z6g_A 150 VLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDL 194 (218)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCH
Confidence 99999999999999999998887643 234445555554
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.86 E-value=6.6e-21 Score=195.58 Aligned_cols=80 Identities=28% Similarity=0.365 Sum_probs=70.8
Q ss_pred CCCccCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccE
Q 010509 184 LTRGVSGGERK------RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHK 257 (508)
Q Consensus 184 ~~~~LSGGerq------Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~ 257 (508)
.+..||||||| |+++|++|+.+|++|+|||||+|||+..+..+++.|+++.++|.|||++|||+. +...||+
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~--~~~~~d~ 322 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADH 322 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH--HHHhCCE
Confidence 34689999999 667778888899999999999999999999999999999877899999999953 5788999
Q ss_pred EEEEe--CCe
Q 010509 258 VLLLS--EGY 265 (508)
Q Consensus 258 v~lL~--~G~ 265 (508)
++.|. +|.
T Consensus 323 ~~~l~~~~g~ 332 (339)
T 3qkt_A 323 VIRISLENGS 332 (339)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEecCCc
Confidence 99986 453
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-23 Score=203.16 Aligned_cols=181 Identities=9% Similarity=0.051 Sum_probs=113.5
Q ss_pred ccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHH
Q 010509 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTET 141 (508)
Q Consensus 62 ~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~ 141 (508)
+++++|+|+||++++|+++||.||||||||||+++|+|++ |.+.++ ..++.++|++|++ +++.+|+.|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~------~~~~~i~~v~~d~-~~~~l~~~~~ 78 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE------QRQRKVVILSQDR-FYKVLTAEQK 78 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC------GGGCSEEEEEGGG-GBCCCCHHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc------ccCCceEEEeCCc-CccccCHhHh
Confidence 3577999999999999999999999999999999999976 444443 2467799999995 7778999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 010509 142 MVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDST 221 (508)
Q Consensus 142 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~ 221 (508)
+.+....... ..+.....+.+.+.++.+ .+..+..+ ..+|+||+||+.+ ++++.+|+++++|||....|..
T Consensus 79 ~~~~~~~~~~-~~~~~~~~~~~~~~L~~l--~~~~~~~~-----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~ 149 (245)
T 2jeo_A 79 AKALKGQYNF-DHPDAFDNDLMHRTLKNI--VEGKTVEV-----PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE 149 (245)
T ss_dssp HHHHTTCCCT-TSGGGBCHHHHHHHHHHH--HTTCCEEE-----CCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH
T ss_pred hhhhccCCCC-CCcccccHHHHHHHHHHH--HCCCCeec-----ccccccccCccCc-eEEecCCCEEEEeCccccccHH
Confidence 8765432110 001111123344455543 34444444 4899999999988 5788899999999998888863
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHHHHHH
Q 010509 222 IAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNYFA 280 (508)
Q Consensus 222 ~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~~f~ 280 (508)
+.++ .+.+|++++|+.......+++++ ++|+ +.+++.+.+.
T Consensus 150 --------l~~~--~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~~~~ 190 (245)
T 2jeo_A 150 --------IRDM--FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILTQYT 190 (245)
T ss_dssp --------HHTT--CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHHHHH
T ss_pred --------HHHh--cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHHHHH
Confidence 2222 37899999997433333444444 5664 5666665443
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-23 Score=215.92 Aligned_cols=192 Identities=14% Similarity=0.149 Sum_probs=139.2
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++.+++++.+.. +..+|+++ +.+.+||+++|+||||||||||+++|+|...++.|.|.+.|++..
T Consensus 44 ~~i~~~~l~~~~~t------------g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ 110 (347)
T 2obl_A 44 DPLLRQVIDQPFIL------------GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGR 110 (347)
T ss_dssp CSTTCCCCCSEECC------------SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHH
T ss_pred CCeeecccceecCC------------CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHH
Confidence 34667777766541 35699999 999999999999999999999999999999999999999997521
Q ss_pred h-----------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 010509 117 N-----------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT 185 (508)
Q Consensus 117 ~-----------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 185 (508)
+ .+++.+.++.|.+. ...+.+..... .....+.....+ .+... .. ..+
T Consensus 111 ev~~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~------------~~~~ae~~~~~~-~~vl~-~l--d~~ 169 (347)
T 2obl_A 111 EVNEFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFT------------ATTIAEYFRDQG-KNVLL-MM--DSV 169 (347)
T ss_dssp HHHHHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHH------------HHHHHHHHHTTT-CEEEE-EE--ETH
T ss_pred HHHHHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHH------------HHHHHHHHHhcc-ccHHH-HH--hhH
Confidence 1 13445788887542 22232221100 000111111111 11110 00 123
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc--CCC-----EEEEEecCcchHHHhhccEE
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN--GGR-----TIVMTIHQPSNMLYYMFHKV 258 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~--~g~-----tii~s~H~~~~~~~~~~D~v 258 (508)
..+|+|| ||+++| +.+|++ |+|||+....++.++++++.+ .|. ||++++||++ ..++|++
T Consensus 170 ~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v 236 (347)
T 2obl_A 170 TRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEV 236 (347)
T ss_dssp HHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHH
T ss_pred HHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---Chhhhhe
Confidence 4899999 899999 688887 999999999999999999975 487 9999999997 3569999
Q ss_pred EEEeCCeEEEEcChhhH
Q 010509 259 LLLSEGYPLYSGEASGA 275 (508)
Q Consensus 259 ~lL~~G~iv~~G~~~~~ 275 (508)
.+|.+|+++.+|+.++.
T Consensus 237 ~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 237 RSILDGHIVLTRELAEE 253 (347)
T ss_dssp HHHCSEEEEBCHHHHTT
T ss_pred EEeeCcEEEEeCCHHHc
Confidence 99999999999987764
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-24 Score=220.05 Aligned_cols=160 Identities=13% Similarity=0.108 Sum_probs=116.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCC
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNS 153 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~ 153 (508)
+++|+++||+||||||||||+++|+|+++|..|. +.++||+|++.+++. |++|++.+.... +
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-------------~~v~~v~qd~~~~~~-t~~e~~~~~~~~----g 148 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-------------PRVDLVTTDGFLYPN-AELQRRNLMHRK----G 148 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-------------CCEEEEEGGGGBCCH-HHHHHTTCTTCT----T
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCC-------------CeEEEEecCccCCcc-cHHHHHHHHHhc----C
Confidence 7999999999999999999999999998876553 458999999999988 999998542211 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 010509 154 FTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL 233 (508)
Q Consensus 154 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l 233 (508)
.+.....+++.+.++.++ .+..++.+ ..|||||+||+++|++++.+|+|||+|||++.+|+.. ..+
T Consensus 149 ~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--------~~l 214 (312)
T 3aez_A 149 FPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--------LMV 214 (312)
T ss_dssp SGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------CCG
T ss_pred CChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------HHH
Confidence 222223456778888888 55444554 3899999999999999999999999999999998621 112
Q ss_pred HcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 234 ANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 234 ~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
.+.=-..|+++|+.+.......+|.+.+.+|+
T Consensus 215 ~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 215 SDLFDFSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp GGGCSEEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred HHhcCcEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 22112345556665544445556655555543
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-24 Score=233.53 Aligned_cols=167 Identities=17% Similarity=0.167 Sum_probs=123.6
Q ss_pred cceeeeceEE-EEeCCeEEEEECCCCCcHHHHHHH--HhcCCCCcccEEEECCEeCCh---hccccEEEEecCCCCCCCC
Q 010509 63 EKAILKGITG-MVKPGEMLAMLGPSGCGKTTLLTA--LGGRLGRINGRITYNGKPFSN---QMTRNTGFVTQEDVLSPYL 136 (508)
Q Consensus 63 ~~~iL~~vs~-~v~~Ge~~ailG~nGsGKSTLL~~--L~g~~~~~~G~I~~~G~~~~~---~~~~~i~yv~Q~~~l~~~l 136 (508)
+.++|+++|+ .+++||+++|+||||||||||+++ ++|+.+|.+|.|+++|++... ..++.+||++|+....++
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~- 102 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGK- 102 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTS-
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCc-
Confidence 4678999999 999999999999999999999999 789988889999999988532 234578999997542211
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 010509 137 TVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTS 216 (508)
Q Consensus 137 Tv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPts 216 (508)
+.+ ..... . +...++++.++|.+..++.+ +.||||| |+++++||||+
T Consensus 103 -----l~~---~~~~~--~-----~~~~~~l~~~~l~~~~~~~~-----~~LS~g~-------------~~~lilDe~t~ 149 (525)
T 1tf7_A 103 -----LFI---LDASP--D-----PEGQEVVGGFDLSALIERIN-----YAIQKYR-------------ARRVSIDSVTS 149 (525)
T ss_dssp -----EEE---EECCC--C-----SSCCSCCSSHHHHHHHHHHH-----HHHHHHT-------------CSEEEEECSTT
T ss_pred -----EEE---EecCc--c-----cchhhhhcccCHHHHHHHHH-----HHHHHcC-------------CCEEEECCHHH
Confidence 100 01000 0 00112233344444444333 2566664 78999999998
Q ss_pred -----CCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchH--------HHhhccEEEEEeC
Q 010509 217 -----GLDSTIAQQILSILLKLANGGRTIVMTIHQPSNM--------LYYMFHKVLLLSE 263 (508)
Q Consensus 217 -----gLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~--------~~~~~D~v~lL~~ 263 (508)
+||+..+.++.++++++++.|+|||+++|+++.. ...+||+|++|++
T Consensus 150 ~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 150 VFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp TSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 5699999999999999988899999999999753 4566999999998
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-21 Score=209.00 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=70.6
Q ss_pred CCcc-CHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 185 TRGV-SGGERKRVSIGQEILINP--SLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 185 ~~~L-SGGerqRv~Ia~aL~~~P--~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
+..| ||||||||+||++|+.+| ++|+|||||+|||+.++..+.+.|+++++ |+|||++||++. .+ ..||++++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~-~~-~~~d~~~~~ 470 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ-IA-ARAHHHYKV 470 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH-HH-HHSSEEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HH-HhCCEEEEE
Confidence 4567 999999999999999999 99999999999999999999999999987 899999999986 34 569999999
Q ss_pred eCC
Q 010509 262 SEG 264 (508)
Q Consensus 262 ~~G 264 (508)
++|
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 554
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-20 Score=213.28 Aligned_cols=134 Identities=22% Similarity=0.364 Sum_probs=111.4
Q ss_pred CCCHHHHHHHHHHhcCCCC---CCH---HHHHHHHHHHHHHcCCCcc-cccccCCCCCCccCHHHHHHHHHHHHHhhCC-
Q 010509 135 YLTVTETMVFTALLQLPNS---FTE---KEKIKCAEAVMTELGLSEC-KNSLIGGPLTRGVSGGERKRVSIGQEILINP- 206 (508)
Q Consensus 135 ~lTv~E~l~~~~~l~~~~~---~~~---~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P- 206 (508)
.+||.|.+.|...+.++.. ..+ ++..+++ +.|+.+||... .|+.++ +|||||||||.||++|..+|
T Consensus 451 ~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~-----tLSGGEkQRV~LA~aL~~~~~ 524 (972)
T 2r6f_A 451 AMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLT 524 (972)
T ss_dssp TSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGG-----GCCHHHHHHHHHHHHHTTCCC
T ss_pred hCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccc-----cCCHHHHHHHHHHHHHhhCCC
Confidence 5899999999776644320 000 2344555 45899999865 576665 99999999999999999985
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE------eCCeEEEEcChhhHH
Q 010509 207 -SLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL------SEGYPLYSGEASGAM 276 (508)
Q Consensus 207 -~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL------~~G~iv~~G~~~~~~ 276 (508)
++|+|||||+|||+.....+++.|++|++.|.|||+++|++. .+ ..||+|++| ++|++++.|+++++.
T Consensus 525 ~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~i-~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 525 GVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED-TM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp SCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH-HH-HSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 999999999999999999999999999988999999999985 44 579999999 799999999998764
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.4e-21 Score=208.04 Aligned_cols=156 Identities=14% Similarity=0.106 Sum_probs=120.8
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcC
Q 010509 71 TGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQL 150 (508)
Q Consensus 71 s~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~ 150 (508)
++.+++|++++|+||||||||||+++++|...+. |+ +.+.|++|++. .++.++.. +.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-------------~vi~~~~ee~~----~~l~~~~~-----~~ 331 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-------------RAILFAYEESR----AQLLRNAY-----SW 331 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-------------CEEEEESSSCH----HHHHHHHH-----TT
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-------------CEEEEEEeCCH----HHHHHHHH-----Hc
Confidence 5689999999999999999999999999987553 43 12456667641 12222221 11
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----HHHH
Q 010509 151 PNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDST-----IAQQ 225 (508)
Q Consensus 151 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~-----~~~~ 225 (508)
..+. ++ +...|+.+..+.. +..|||||+||+.+|+++..+|+++++| ||+|||.. .+..
T Consensus 332 --g~~~-------~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~ 395 (525)
T 1tf7_A 332 --GMDF-------EE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQF 395 (525)
T ss_dssp --SCCH-------HH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHH
T ss_pred --CCCH-------HH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHH
Confidence 1221 12 2345666655544 4589999999999999999999999999 99999999 9999
Q ss_pred HHHHHHHHHcCCCEEEEEecCcc---------hHHHhhccEEEEEeCCe
Q 010509 226 ILSILLKLANGGRTIVMTIHQPS---------NMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 226 i~~~L~~l~~~g~tii~s~H~~~---------~~~~~~~D~v~lL~~G~ 265 (508)
+.++++.+++.|.|||+++|+.. ..+..++|++++|++|+
T Consensus 396 i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 396 VIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99999999888999999999981 34678899999999886
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.2e-22 Score=229.20 Aligned_cols=172 Identities=19% Similarity=0.137 Sum_probs=120.8
Q ss_pred eEEEEe-----EEEEEeccccccCcccccccceeeeceEEEEeC-------CeEEEEECCCCCcHHHHHHHHhcCCCCcc
Q 010509 38 TLKFED-----IVYKIKMKKGFYGSNKKIEEKAILKGITGMVKP-------GEMLAMLGPSGCGKTTLLTALGGRLGRIN 105 (508)
Q Consensus 38 ~l~~~~-----l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~-------Ge~~ailG~nGsGKSTLL~~L~g~~~~~~ 105 (508)
.|+++| |++.+. +++.+++|+++.+++ |++++|+||||||||||||++ |++.+
T Consensus 750 ~l~i~~~rHP~l~~~~~------------~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-- 814 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFF------------GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-- 814 (1022)
T ss_dssp CEEEEEECCCC------------------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--
T ss_pred eEEEEeccccEEEEEec------------CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--
Confidence 488888 776652 135799999999987 999999999999999999999 88642
Q ss_pred cEEEECCEeCChhccccEE-EEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCC
Q 010509 106 GRITYNGKPFSNQMTRNTG-FVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPL 184 (508)
Q Consensus 106 G~I~~~G~~~~~~~~~~i~-yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 184 (508)
..++| ||||+.. .+||.|++.. + +|+.+.....
T Consensus 815 --------------~aqiG~~Vpq~~~---~l~v~d~I~~----r--------------------ig~~d~~~~~----- 848 (1022)
T 2o8b_B 815 --------------MAQMGCYVPAEVC---RLTPIDRVFT----R--------------------LGASDRIMSG----- 848 (1022)
T ss_dssp --------------HHTTTCCEESSEE---EECCCSBEEE----E--------------------CC-------------
T ss_pred --------------HhheeEEeccCcC---CCCHHHHHHH----H--------------------cCCHHHHhhc-----
Confidence 12345 9999753 4555554411 1 1222111111
Q ss_pred CCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEe
Q 010509 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIA-QQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~-~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
...+|+++++ +++|++++++|+++|||||++|+|+... ..++++|+.++++ |.++|++||+++ .+...+|++.++
T Consensus 849 ~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~- 925 (1022)
T 2o8b_B 849 ESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVR- 925 (1022)
T ss_dssp -CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEE-
T ss_pred hhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceee-
Confidence 1357777664 9999999999999999999999999985 5578999999876 999999999986 566789998887
Q ss_pred CCeEE--EEcChh
Q 010509 263 EGYPL--YSGEAS 273 (508)
Q Consensus 263 ~G~iv--~~G~~~ 273 (508)
+|++. +.|+++
T Consensus 926 ~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 926 LGHMACMVENECE 938 (1022)
T ss_dssp EEEEEEC------
T ss_pred cCeEEEEEecCcc
Confidence 58887 556544
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-20 Score=213.47 Aligned_cols=169 Identities=21% Similarity=0.270 Sum_probs=129.0
Q ss_pred CCCCcHHHHHHHHhc---------CCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhc------
Q 010509 85 PSGCGKTTLLTALGG---------RLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQ------ 149 (508)
Q Consensus 85 ~nGsGKSTLL~~L~g---------~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~------ 149 (508)
.+..||+||.+.+.. ++.+..|+|.++|+++.+.. .+++.|.+.|.....
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~---------------~~~v~e~~~~~~~~~~~~~~~ 334 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELS---------------RLPLARVSELLRPYAEEREPG 334 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHH---------------HSBHHHHHHHHHHHHTTCSSC
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHh---------------hcCHHHHHHHHHhhhhhhhhc
Confidence 355689999998876 34578899999999875411 123333333322210
Q ss_pred ------CCCCC------CHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCccCHHHHHHHHHHHHHhhCC--CEEEEeCC
Q 010509 150 ------LPNSF------TEKEKIKCAEAVMTELGLSEC-KNSLIGGPLTRGVSGGERKRVSIGQEILINP--SLLFLDEP 214 (508)
Q Consensus 150 ------~~~~~------~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P--~illLDEP 214 (508)
+.... -.++..++++ .++.+||.+. .++.+. +|||||||||.||++|..+| .+|+||||
T Consensus 335 ~~~~~~~~~~~~~i~~~i~~ei~~rl~-~L~~vGL~~l~l~r~~~-----tLSGGe~QRV~LA~aL~~~p~~~llILDEP 408 (842)
T 2vf7_A 335 HAERVKNRPEQAIALQRMAADLVKRLD-VLLHLGLGYLGLDRSTP-----TLSPGELQRLRLATQLYSNLFGVVYVLDEP 408 (842)
T ss_dssp STTSSSSCSSHHHHHHHHHHHHHHHHH-HHHHTTCTTSBTTCBGG-----GSCHHHHHHHHHHHHTTTCCCSCEEEEECT
T ss_pred ccchhhcchhhHHHHHHHHHHHHHHHH-HHHhCCCCcCCccCCcC-----cCCHHHHHHHHHHHHHhhCCCCeEEEeeCc
Confidence 00000 0234455666 6889999865 566654 99999999999999999999 59999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE------eCCeEEEEcChhhHH
Q 010509 215 TSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL------SEGYPLYSGEASGAM 276 (508)
Q Consensus 215 tsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL------~~G~iv~~G~~~~~~ 276 (508)
|+|||+.....++++|++|++.|.|||+++|++. . ...+|+|++| ++|++++.|++++..
T Consensus 409 T~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~-~-l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 409 SAGLHPADTEALLSALENLKRGGNSLFVVEHDLD-V-IRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp TTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH-H-HTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHH-H-HHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 9999999999999999999988999999999985 3 4679999999 799999999998754
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-20 Score=212.01 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=112.8
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh--------cCCCCcccEEEECCEeCChhccccEEEEecCCCCCC
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG--------GRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSP 134 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~--------g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~ 134 (508)
.+.+++|+++.+++|++++|+||||||||||||+++ |..-|.++.. ++.+ +
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~--------------~~~~---d---- 706 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE--------------VSIV---D---- 706 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------------EECC---S----
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------------chHH---H----
Confidence 467999999999999999999999999999999994 3322221110 1100 0
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHH--hhCCCEEEEe
Q 010509 135 YLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEI--LINPSLLFLD 212 (508)
Q Consensus 135 ~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL--~~~P~illLD 212 (508)
+++..+|+.+. . .+++|+|++++..+|+++ +++|+++|||
T Consensus 707 ------------------------------~i~~~ig~~d~---l-----~~~lStf~~e~~~~a~il~~a~~~sLlLLD 748 (934)
T 3thx_A 707 ------------------------------CILARVGAGDS---Q-----LKGVSTFMAEMLETASILRSATKDSLIIID 748 (934)
T ss_dssp ------------------------------EEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred ------------------------------HHHHhcCchhh---H-----HHhHhhhHHHHHHHHHHHHhccCCcEEEEe
Confidence 01111222211 1 136888888888888888 9999999999
Q ss_pred CCCCCCCHHHHHHH-HHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 213 EPTSGLDSTIAQQI-LSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 213 EPtsgLD~~~~~~i-~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
|||+|||+.....+ ..+++.+++ .|.|+|++||+.+ +..++|++..+.+|++...++.+++
T Consensus 749 Ep~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e--l~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 749 ELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHE--LTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp SCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG--GGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH--HHHHhcccceeEeeEEEEEecCCcE
Confidence 99999999999888 677788876 4999999999964 5688999999999999988877654
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-21 Score=190.40 Aligned_cols=132 Identities=17% Similarity=0.295 Sum_probs=100.2
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCc-ccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHH
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI-NGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~-~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++....+...++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~-------------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR-------------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEE--------------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHH--------------
Confidence 4899999 9999999999999999999999999999887 9999999877532111112222221
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 010509 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIA 223 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~ 223 (508)
.+|+.. ..+ |++||++|..+|+++++|||| |+.+.
T Consensus 79 -------------------------~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~~~ 113 (261)
T 2eyu_A 79 -------------------------EVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLETV 113 (261)
T ss_dssp -------------------------EBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHH
T ss_pred -------------------------HhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHH
Confidence 122221 123 899999999999999999999 98886
Q ss_pred HHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 224 QQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 224 ~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
..++ +. ++.|.+|++++|+.+ ....+||++.|..
T Consensus 114 ~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 114 ETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 6544 33 356999999999976 4577898877753
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-20 Score=181.15 Aligned_cols=150 Identities=21% Similarity=0.200 Sum_probs=95.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-------cccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHH
Q 010509 72 GMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-------INGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVF 144 (508)
Q Consensus 72 ~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-------~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~ 144 (508)
+-+++||+++|+||||||||||+++|+|...+ ..|.+.+++.+... .+.+++++|+..+.+. |+.||+.+
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~--~~~i~~~~~~~~~~~~-~~~~~~~~ 96 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR--PERIREIAQNRGLDPD-EVLKHIYV 96 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC--HHHHHHHHHHTTSCHH-HHHHTEEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC--HHHHHHHHHHcCCCHH-HHhhcEEE
Confidence 57999999999999999999999999995433 23366666543210 1123333443333222 33333211
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH-HHHHHHHHHHhh-------CCCEEEEeCCCC
Q 010509 145 TALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE-RKRVSIGQEILI-------NPSLLFLDEPTS 216 (508)
Q Consensus 145 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe-rqRv~Ia~aL~~-------~P~illLDEPts 216 (508)
. +..++++ ++++..+.+++. +|+++++||||+
T Consensus 97 ~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 97 A----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp E----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred E----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 1 1223333 333555555555 899999999999
Q ss_pred CCCHH-------H-----HHHHHHHHHHHHc-CCCEEEEEecCcch---HHHhhccEEEEEeCC
Q 010509 217 GLDST-------I-----AQQILSILLKLAN-GGRTIVMTIHQPSN---MLYYMFHKVLLLSEG 264 (508)
Q Consensus 217 gLD~~-------~-----~~~i~~~L~~l~~-~g~tii~s~H~~~~---~~~~~~D~v~lL~~G 264 (508)
++|+. . ..++++.|+++++ .|.|||+++|+... .+.+.+|+++.|++|
T Consensus 137 ~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 137 HFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 99984 2 2378888888865 49999999995432 367889999999875
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-21 Score=198.33 Aligned_cols=155 Identities=17% Similarity=0.153 Sum_probs=88.2
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC-CCCcccEEEECCEeCChh-ccccEEEEecCCCCCCCCCHHH
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGR-LGRINGRITYNGKPFSNQ-MTRNTGFVTQEDVLSPYLTVTE 140 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~-~~~~~G~I~~~G~~~~~~-~~~~i~yv~Q~~~l~~~lTv~E 140 (508)
++.++++++++| +|+||||+|||||++.|+|. ..+.+| |.++|.++... ..+.+++++|++.....+|+.|
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~D 82 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVVD 82 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---CCEEEEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCcccCcchhh
Confidence 578999999998 99999999999999999997 788899 88888876432 2356899999988888899999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCC
Q 010509 141 TMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTS-GLD 219 (508)
Q Consensus 141 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPts-gLD 219 (508)
+..++.... ..+..+..++.+. +..+..+ +++|||||||+.+|++++ ++++||||+ |||
T Consensus 83 t~g~~~~~~-----~~e~~~~l~~~l~------~~~~~~~-----~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld 142 (301)
T 2qnr_A 83 TPGYGDAIN-----CRDCFKTIISYID------EQFERYL-----HDESGLNRRHIIDNRVHC----CFYFISPFGHGLK 142 (301)
T ss_dssp EC----------------CTTHHHHHH------HHHHHHH-----HHHTSSCCTTCCCCCCCE----EEEEECSSSSSCC
T ss_pred hhhhhhhcC-----cHHHHHHHHHHHH------HHHHHHH-----HHhCHHhhhhhhhhhhhh----eeeeecCcccCCC
Confidence 887753221 0011111122221 2233444 489999999999988875 999999998 599
Q ss_pred HHHHHHHHHHHHHHHcC-CCEEEEEecCcc
Q 010509 220 STIAQQILSILLKLANG-GRTIVMTIHQPS 248 (508)
Q Consensus 220 ~~~~~~i~~~L~~l~~~-g~tii~s~H~~~ 248 (508)
+... +.++++.++ +.++|++.||+.
T Consensus 143 ~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 143 PLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 9873 566666554 789999999975
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=7.7e-19 Score=159.39 Aligned_cols=81 Identities=25% Similarity=0.333 Sum_probs=72.6
Q ss_pred CCCccCHHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccE
Q 010509 184 LTRGVSGGERKRVSIG------QEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHK 257 (508)
Q Consensus 184 ~~~~LSGGerqRv~Ia------~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~ 257 (508)
.+.+||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||++||++ . +...+|+
T Consensus 54 ~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~-~~~~~d~ 131 (148)
T 1f2t_B 54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-E-LKDAADH 131 (148)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-G-GGGGCSE
T ss_pred ChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-H-HHHhCCE
Confidence 4569999999999886 899999999999999999999999999999999987799999999997 3 5689999
Q ss_pred EEEE--eCCeE
Q 010509 258 VLLL--SEGYP 266 (508)
Q Consensus 258 v~lL--~~G~i 266 (508)
+++| .+|..
T Consensus 132 ii~l~~~~g~s 142 (148)
T 1f2t_B 132 VIRISLENGSS 142 (148)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEcCCCeE
Confidence 9999 45643
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.7e-22 Score=189.22 Aligned_cols=146 Identities=15% Similarity=0.163 Sum_probs=115.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCC--CCCCHHHHHHHHHHhcCC
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLS--PYLTVTETMVFTALLQLP 151 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~--~~lTv~E~l~~~~~l~~~ 151 (508)
.++|++++|+||||||||||+++|+|++++ .++|++|++.++ +.+|+.++..+.. ..+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~--~~~ 62 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE------------------RVALLPMDHYYKDLGHLPLEERLRVNY--DHP 62 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--TSG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC------------------CeEEEecCccccCcccccHHHhcCCCC--CCh
Confidence 578999999999999999999999998753 489999998776 5689988865432 111
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH----HHHHHHHHHhhCCCEEEEeCCCCC-------CCH
Q 010509 152 NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER----KRVSIGQEILINPSLLFLDEPTSG-------LDS 220 (508)
Q Consensus 152 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer----qRv~Ia~aL~~~P~illLDEPtsg-------LD~ 220 (508)
. ....+++.+.++.+++.+..+... ..+|+||| ||+++|++++.+|+++++||||++ ||+
T Consensus 63 ~----~~~~~~~~~~l~~~~~~~~~~~~~-----~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~ 133 (211)
T 3asz_A 63 D----AFDLALYLEHAQALLRGLPVEMPV-----YDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDA 133 (211)
T ss_dssp G----GBCHHHHHHHHHHHHTTCCEEECC-----EETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEEC
T ss_pred h----hhhHHHHHHHHHHHHcCCCcCCCc-----ccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeC
Confidence 1 112345677788888877665543 47999964 788999999999999999999999 999
Q ss_pred HHHHHHHHHHHHH-HcCCCEEEEEecCcc
Q 010509 221 TIAQQILSILLKL-ANGGRTIVMTIHQPS 248 (508)
Q Consensus 221 ~~~~~i~~~L~~l-~~~g~tii~s~H~~~ 248 (508)
....++.+.+++. .++|+|++.++|+..
T Consensus 134 ~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 134 DADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp CHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999886 456999999999753
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-20 Score=211.87 Aligned_cols=144 Identities=12% Similarity=0.075 Sum_probs=100.2
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC-CCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHH
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL-GRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTET 141 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~-~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~ 141 (508)
++.|++|+|+++++|++++|+||||||||||||++++.. ....|. .+... -+.+..-+.++..+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~------~vpa~----~~~i~~~d~i~~~ig---- 724 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS------YVPAE----EATIGIVDGIFTRMG---- 724 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTC------CBSSS----EEEEECCSEEEEEC-----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCc------cccch----hhhhhHHHHHHHhCC----
Confidence 467999999999999999999999999999999998643 111111 01000 011111111222121
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 010509 142 MVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDST 221 (508)
Q Consensus 142 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~ 221 (508)
+.+..... ...+|+||+|++.|+++ +++|+++||||||+|||+.
T Consensus 725 ------------------------------~~d~l~~~-----~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~ 768 (918)
T 3thx_B 725 ------------------------------AADNIYKG-----RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTH 768 (918)
T ss_dssp --------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHH
T ss_pred ------------------------------hHHHHHHh-----HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHH
Confidence 11111111 13789999999999998 8999999999999999999
Q ss_pred HHHHHH-HHHHHHHc-CCCEEEEEecCcchHHHhhccEE
Q 010509 222 IAQQIL-SILLKLAN-GGRTIVMTIHQPSNMLYYMFHKV 258 (508)
Q Consensus 222 ~~~~i~-~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v 258 (508)
....+. .+++.+++ .|.|+|++||+++ +..++|+.
T Consensus 769 ~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~ 805 (918)
T 3thx_B 769 DGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhc
Confidence 999997 77888865 5999999999975 34556643
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.4e-20 Score=205.99 Aligned_cols=128 Identities=16% Similarity=0.164 Sum_probs=100.6
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC-CCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHH
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL-GRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTET 141 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~-~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~ 141 (508)
++.+++|+|++ |++++|+||||||||||||+|+|+. .+..|.+. .. .+..+++++| +++.+++.|+
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v------pa-~~~~i~~v~~---i~~~~~~~d~ 631 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV------PA-EEAHLPLFDG---IYTRIGASDD 631 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB------SS-SEEEECCCSE---EEEECCC---
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee------eh-hccceeeHHH---hhccCCHHHH
Confidence 46799999999 9999999999999999999999976 35667642 11 2345777766 4555555554
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHH--hhCCCEEEEeCC---CC
Q 010509 142 MVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEI--LINPSLLFLDEP---TS 216 (508)
Q Consensus 142 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL--~~~P~illLDEP---ts 216 (508)
+. .++|+|+++++.+++++ +++|+++||||| |+
T Consensus 632 l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs 669 (765)
T 1ewq_A 632 LA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTS 669 (765)
T ss_dssp ---------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSC
T ss_pred HH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCC
Confidence 31 15799999999999999 999999999999 99
Q ss_pred CCCHHHH-HHHHHHHHHHHcCCCEEEEEecCcc
Q 010509 217 GLDSTIA-QQILSILLKLANGGRTIVMTIHQPS 248 (508)
Q Consensus 217 gLD~~~~-~~i~~~L~~l~~~g~tii~s~H~~~ 248 (508)
+||..+. ..+++.|++ .|.|+|++||+.+
T Consensus 670 ~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 670 SLDGVAIATAVAEALHE---RRAYTLFATHYFE 699 (765)
T ss_dssp HHHHHHHHHHHHHHHHH---HTCEEEEECCCHH
T ss_pred CcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH
Confidence 9999875 578888876 4899999999964
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-20 Score=188.18 Aligned_cols=148 Identities=15% Similarity=0.168 Sum_probs=110.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--------hc--cccEEEEecCCCCCCCCCHHHHHHHH
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--------QM--TRNTGFVTQEDVLSPYLTVTETMVFT 145 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--------~~--~~~i~yv~Q~~~l~~~lTv~E~l~~~ 145 (508)
+|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .+ ++.++|++|++.+.|.+|++|++.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999998632 11 34699999999989989999998765
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 010509 146 ALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQ 225 (508)
Q Consensus 146 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~ 225 (508)
.... .. ..+++..|+.+..+. -++..++||++|||+++.+|+.++| .||+.+..+
T Consensus 181 ~~~~----~d--------~~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~ 235 (304)
T 1rj9_A 181 KARG----YD--------LLFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQN 235 (304)
T ss_dssp HHHT----CS--------EEEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTH
T ss_pred HhCC----CC--------EEEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHH
Confidence 3211 00 012333444433222 2455569999999999999994444 455555556
Q ss_pred HHHHHHHHHcC-CCEEEEEecCcc
Q 010509 226 ILSILLKLANG-GRTIVMTIHQPS 248 (508)
Q Consensus 226 i~~~L~~l~~~-g~tii~s~H~~~ 248 (508)
+++.++++.+. |.|+|++||+..
T Consensus 236 ~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 236 GLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHcCCcEEEEECCcc
Confidence 77777777654 899999999853
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.75 E-value=6.4e-18 Score=178.65 Aligned_cols=75 Identities=17% Similarity=0.218 Sum_probs=68.5
Q ss_pred CccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 186 RGVSGGERKRVSIGQEIL----INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~----~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.++|.++|++||++ .....||+++.+
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 459999999999999999 57999999999999999999999999999876689999999995 356789999999
Q ss_pred e
Q 010509 262 S 262 (508)
Q Consensus 262 ~ 262 (508)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-20 Score=208.50 Aligned_cols=194 Identities=14% Similarity=0.150 Sum_probs=119.7
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeece----------EEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-cc
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGI----------TGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-IN 105 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v----------s~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-~~ 105 (508)
..++++||+..+.... +++|+.+ +++++. ++|+|||||||||||++|+|+..| ++
T Consensus 9 ~~i~~~~l~~~~~~~~-----------r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~s 74 (608)
T 3szr_A 9 GSVAENNLCSQYEEKV-----------RPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGS 74 (608)
T ss_dssp -----------CHHHH-----------HHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-----
T ss_pred chhhhhhhhHHHHHHH-----------HHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCC
Confidence 3577889988875221 1222222 344544 999999999999999999999877 79
Q ss_pred cEEEECCEeCC-------hhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 010509 106 GRITYNGKPFS-------NQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNS 178 (508)
Q Consensus 106 G~I~~~G~~~~-------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 178 (508)
|.|+++|.++. ..+++.++|++|+..+++.+||+|++.++........ -++.
T Consensus 75 G~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~----------------~~~s----- 133 (608)
T 3szr_A 75 GIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG----------------MGIS----- 133 (608)
T ss_dssp --CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS----------------SCCC-----
T ss_pred CeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc----------------cccc-----
Confidence 99999998852 2456789999999999999999999987543210000 0111
Q ss_pred ccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHc--CCCEEEEEecCcchH
Q 010509 179 LIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEP------TSGLDSTIAQQILSILLKLAN--GGRTIVMTIHQPSNM 250 (508)
Q Consensus 179 ~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEP------tsgLD~~~~~~i~~~L~~l~~--~g~tii~s~H~~~~~ 250 (508)
++++.++.+...+|+++++||| |+|||+..+.++.++++++.+ .+.++++++|+.+..
T Consensus 134 --------------~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a 199 (608)
T 3szr_A 134 --------------HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA 199 (608)
T ss_dssp --------------SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT
T ss_pred --------------hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc
Confidence 1111122222358999999999 999999999999999999753 378899999997521
Q ss_pred ------HHhh-----ccEEEEEeCCeEEEEcChhhHHHHH
Q 010509 251 ------LYYM-----FHKVLLLSEGYPLYSGEASGAMNYF 279 (508)
Q Consensus 251 ------~~~~-----~D~v~lL~~G~iv~~G~~~~~~~~f 279 (508)
+.+. ...|.+++++..+..|+.+++.+..
T Consensus 200 ~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l 239 (608)
T 3szr_A 200 TTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVV 239 (608)
T ss_dssp TCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC
T ss_pred cHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHHHH
Confidence 1111 2458899999888888766555443
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-19 Score=173.03 Aligned_cols=167 Identities=16% Similarity=0.104 Sum_probs=112.3
Q ss_pred ceeeeceEE-EEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-hcc---ccEEEEecCCCCCCCCCH
Q 010509 64 KAILKGITG-MVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN-QMT---RNTGFVTQEDVLSPYLTV 138 (508)
Q Consensus 64 ~~iL~~vs~-~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~-~~~---~~i~yv~Q~~~l~~~lTv 138 (508)
.+.|+++.+ .+++|++++|+||||||||||++.|++...+.+|.|.+.+.+... ... +..++.+|+.... .+++
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 87 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLII 87 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEEE
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEEE
Confidence 456888885 899999999999999999999999998776666777765543321 110 0112222110000 0000
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCC--EEEEeCCCC
Q 010509 139 TETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPS--LLFLDEPTS 216 (508)
Q Consensus 139 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~--illLDEPts 216 (508)
++...+.++ ...+ ....|.+|.++...+.....+|+ ++++||||+
T Consensus 88 ------------------------~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 134 (235)
T 2w0m_A 88 ------------------------IDALMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA 134 (235)
T ss_dssp ------------------------EECCC---------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG
T ss_pred ------------------------EeccccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchH
Confidence 000000000 0001 12459999998888888888999 999999998
Q ss_pred CC--CHHHHHHHHHHHHHHHc-CCCEEEEEecCcc-------hHHHhhccEEEEEeCC
Q 010509 217 GL--DSTIAQQILSILLKLAN-GGRTIVMTIHQPS-------NMLYYMFHKVLLLSEG 264 (508)
Q Consensus 217 gL--D~~~~~~i~~~L~~l~~-~g~tii~s~H~~~-------~~~~~~~D~v~lL~~G 264 (508)
++ |+....++++.|+++++ .|.|||+++|+.. ..+.+.+|++++|++.
T Consensus 135 ~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 135 LFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 87 99999999999999975 5999999999983 2477889999999854
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.6e-19 Score=199.39 Aligned_cols=155 Identities=15% Similarity=0.030 Sum_probs=107.6
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-CcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHH
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-RINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTET 141 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~ 141 (508)
++.+++|+|++ ++|++++|+||||||||||||+|+|... ...| ..+... +..++++.| +++.+++.|+
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa~-~~~i~~~~~---i~~~~~~~d~ 662 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPAQ-KVEIGPIDR---IFTRVGAADD 662 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSSS-EEEECCCCE---EEEEEC----
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccchh-cccceeHHH---HHhhCCHHHH
Confidence 46799999999 9999999999999999999999999641 1222 112111 233555554 4555555555
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 010509 142 MVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDST 221 (508)
Q Consensus 142 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~ 221 (508)
+... + +.+|+++++ ++.+...+++|+++|||||++|+|+.
T Consensus 663 l~~~--------------------------~-------------stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~ 702 (800)
T 1wb9_A 663 LASG--------------------------R-------------STFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTY 702 (800)
T ss_dssp ----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSS
T ss_pred HHhh--------------------------h-------------hhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChh
Confidence 4211 0 135666654 44455678999999999999999998
Q ss_pred HHHHH-HHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 222 IAQQI-LSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 222 ~~~~i-~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
....+ .++++.+++ .|.++|++||+++ +..++|++..+.+|++.+..
T Consensus 703 d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 703 DGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVANVHLDALE 751 (800)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEEEEEEEEE
Confidence 88776 788888887 4999999999975 34678877666677665543
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.7e-20 Score=175.71 Aligned_cols=156 Identities=16% Similarity=0.158 Sum_probs=105.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSF 154 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~ 154 (508)
|++++|+||||||||||+++|+|+++ ++| |.++|.+... ..++.+||++|+. .... +++ +.+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~~---- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVGL---- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECCC----
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hcccc----
Confidence 78999999999999999999999988 899 9999987643 3567899999975 1211 111 11110
Q ss_pred CHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCccCHHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHHHH
Q 010509 155 TEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTRGVSGGERKRV-SIGQ---EILINPSLLFLDE--PTSGLDSTIAQQIL 227 (508)
Q Consensus 155 ~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv-~Ia~---aL~~~P~illLDE--PtsgLD~~~~~~i~ 227 (508)
+..+ ..+..+| .+...+|+|||+++ ++++ |+..+|+++++|| |+..+|......+.
T Consensus 67 ----------------~~~~~~~~~~v~-~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~ 129 (189)
T 2i3b_A 67 ----------------EPPPGKRECRVG-QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVR 129 (189)
T ss_dssp ----------------CCCSSSCCEESS-SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHH
T ss_pred ----------------cCCccccccccc-eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHH
Confidence 0110 0111333 23347999999988 4444 5789999999999 89999987554444
Q ss_pred HHHHHHHcCCCEEEE----EecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 228 SILLKLANGGRTIVM----TIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 228 ~~L~~l~~~g~tii~----s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
+.+ ++..++|+ ++|+.+ ..+.|+|..+.+|+++.-.
T Consensus 130 ~~l----~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 130 QTL----STPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HHH----HCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred HHH----hCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 444 34445553 238864 2456777778888887643
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-19 Score=186.72 Aligned_cols=163 Identities=20% Similarity=0.168 Sum_probs=103.9
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHhcCC--CCcc----cE-EEECCEeCChhccccEEEEecCCCCCCCCC
Q 010509 66 ILKGI-TGMVKPGEMLAMLGPSGCGKTTLLTALGGRL--GRIN----GR-ITYNGKPFSNQMTRNTGFVTQEDVLSPYLT 137 (508)
Q Consensus 66 iL~~v-s~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~--~~~~----G~-I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lT 137 (508)
.|+++ ++.+++|++++|+||||||||||++.|++.. +|++ |. |++++++.. .++++++++|...+++. +
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--CHHHHHHHHHHcCCCHH-H
Confidence 45665 6899999999999999999999999999976 5666 67 888876541 12345666666544432 4
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHh-------hCCCEEE
Q 010509 138 VTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEIL-------INPSLLF 210 (508)
Q Consensus 138 v~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~-------~~P~ill 210 (508)
+.||+.+.. .. -|.+++|++.++++++ .+|++++
T Consensus 196 v~~ni~~~~------~~---------------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 196 VLKHIYVAR------AF---------------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HGGGEEEEE------CC---------------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HhhCEEEEe------cC---------------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 444432211 00 1345555555555555 6899999
Q ss_pred EeCCCCCCCHHH------------HHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 211 LDEPTSGLDSTI------------AQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 211 LDEPtsgLD~~~------------~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
+||||+++|+.. ..++++.|+++++ .|+|||+++|... .....++.......|+++.++.
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecC
Confidence 999999999852 4567777777765 5899999999865 3434455556666776654443
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-19 Score=171.56 Aligned_cols=175 Identities=13% Similarity=0.073 Sum_probs=98.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC-----CCcccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL-----GRINGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~-----~~~~G~I~~~G 112 (508)
.|+++|+++.++ ..++++ +.+++|+.++|+|+||||||||+|.|+|.. .|+.|++.+.+
T Consensus 3 ~l~~~~~~~~~~--------------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~ 66 (210)
T 1pui_A 3 NLNYQQTHFVMS--------------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN 66 (210)
T ss_dssp --------CEEE--------------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEE
T ss_pred chhhhhhhheee--------------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeE
Confidence 378899998874 246777 889999999999999999999999999987 67778765432
Q ss_pred EeCChhccccEEEEecCCCCC----CCCC---HHHHHHHHHHh-c----------CCCCCCHHHHHHHHHHHHHHcCCCc
Q 010509 113 KPFSNQMTRNTGFVTQEDVLS----PYLT---VTETMVFTALL-Q----------LPNSFTEKEKIKCAEAVMTELGLSE 174 (508)
Q Consensus 113 ~~~~~~~~~~i~yv~Q~~~l~----~~lT---v~E~l~~~~~l-~----------~~~~~~~~~~~~~v~~~l~~lgL~~ 174 (508)
.-. .....-.+ +.+.+. +.-. .+..+...... + .....+. ..+.+.++++..++..
T Consensus 67 ~~~---~~~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~ 140 (210)
T 1pui_A 67 LFE---VADGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAV 140 (210)
T ss_dssp EEE---EETTEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCE
T ss_pred EEE---ecCCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCe
Confidence 110 00011111 111110 0000 11112111110 0 0011122 2234555667777764
Q ss_pred cc-ccccCCCCCCccCHHHHHH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCE
Q 010509 175 CK-NSLIGGPLTRGVSGGERKR-VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRT 239 (508)
Q Consensus 175 ~~-~~~vg~~~~~~LSGGerqR-v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~t 239 (508)
.. .+++ ..+|+||||| +..+++++.+|+++++|||||++|.....++++.|.++.++|.|
T Consensus 141 ~~v~nK~-----D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 141 LVLLTKA-----DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp EEEEECG-----GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred EEEEecc-----cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 32 3333 3689999999 89999999999999999999999999999999999998776644
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-18 Score=177.66 Aligned_cols=127 Identities=21% Similarity=0.298 Sum_probs=91.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCCCCc-ccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC
Q 010509 73 MVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI-NGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP 151 (508)
Q Consensus 73 ~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~-~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~ 151 (508)
...+|++++|+|||||||||||++|+|.+++. +|.|...+.++....+...++++|.......+|.
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~------------- 185 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGF------------- 185 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCH-------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCH-------------
Confidence 67899999999999999999999999998776 5676554444322223334455554322111111
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 010509 152 NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL 231 (508)
Q Consensus 152 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~ 231 (508)
.+ +||++|..+|++|++|||| |..+ ++.+.
T Consensus 186 ---------------------------------------~~----~La~aL~~~PdvillDEp~---d~e~----~~~~~ 215 (356)
T 3jvv_A 186 ---------------------------------------SE----ALRSALREDPDIILVGEMR---DLET----IRLAL 215 (356)
T ss_dssp ---------------------------------------HH----HHHHHTTSCCSEEEESCCC---SHHH----HHHHH
T ss_pred ---------------------------------------HH----HHHHHhhhCcCEEecCCCC---CHHH----HHHHH
Confidence 11 8999999999999999999 6555 44445
Q ss_pred HHHcCCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 232 KLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 232 ~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
++++.|+||++|+|+.+. . ..+||++.|..|
T Consensus 216 ~~~~~G~~vl~t~H~~~~-~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 216 TAAETGHLVFGTLHTTSA-A-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHTTCEEEEEESCSSH-H-HHHHHHHHTSCH
T ss_pred HHHhcCCEEEEEEccChH-H-HHHHHHhhhcCc
Confidence 556779999999999874 4 778999888654
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-17 Score=164.26 Aligned_cols=151 Identities=18% Similarity=0.172 Sum_probs=106.7
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC
Q 010509 73 MVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPN 152 (508)
Q Consensus 73 ~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~ 152 (508)
-+++|++++|+||||||||||++.+++... .|++. .|.+... ...+.|+..++.. ..+.+.+. .+. .
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~--~~~v~~~~~e~~~---~~~~~r~~---~~g--~ 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP--TGPVIYLPAEDPP---TAIHHRLH---ALG--A 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC--CCCEEEEESSSCH---HHHHHHHH---HHH--T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC--CccEEEEECCCCH---HHHHHHHH---HHH--h
Confidence 488999999999999999999999998542 46553 3544321 3457888776532 01112221 111 1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHHH---HHHH
Q 010509 153 SFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTS--GLDSTIA---QQIL 227 (508)
Q Consensus 153 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPts--gLD~~~~---~~i~ 227 (508)
.... ...+++++.+++.+..+..+ ..+|+||+|++ ++++.+|+++++||||+ ++|.... .+++
T Consensus 93 ~~~~----~~~~~~~~~l~l~~~~~~~~-----~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~ 160 (279)
T 1nlf_A 93 HLSA----EERQAVADGLLIQPLIGSLP-----NIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVI 160 (279)
T ss_dssp TSCH----HHHHHHHHHEEECCCTTSCC-----CTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHH
T ss_pred hcCh----hhhhhccCceEEeecCCCCc-----ccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHH
Confidence 1222 23566788888877665544 48999998875 68889999999999999 9998544 8888
Q ss_pred HHHHHHHc-CCCEEEEEecCcc
Q 010509 228 SILLKLAN-GGRTIVMTIHQPS 248 (508)
Q Consensus 228 ~~L~~l~~-~g~tii~s~H~~~ 248 (508)
+.|+++++ .|+|||+++|+..
T Consensus 161 ~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 161 GRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHcCCEEEEEecCCC
Confidence 99999874 5999999999975
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-18 Score=167.86 Aligned_cols=149 Identities=19% Similarity=0.172 Sum_probs=103.4
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC--cccEEEECCEeCChhccccEEEEecCCCCCCCCCH----HHHHHH
Q 010509 71 TGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR--INGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTV----TETMVF 144 (508)
Q Consensus 71 s~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~--~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv----~E~l~~ 144 (508)
.-..++|++++|+||||||||||+++|+|+.+| .+|.|.+++++.....++.++|++|++..++.+++ .|++.+
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 345789999999999999999999999999875 78999999887654445678999997654443333 121111
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 010509 145 TALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQ 224 (508)
Q Consensus 145 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~ 224 (508)
. |+ ..+.| +++ +.+++..++++||| ||+.++.
T Consensus 90 ~-----------------------------------~~--~yg~~---~~~---v~~~l~~G~illLD-----LD~~~~~ 121 (219)
T 1s96_A 90 F-----------------------------------GN--YYGTS---REA---IEQVLATGVDVFLD-----IDWQGAQ 121 (219)
T ss_dssp T-----------------------------------TE--EEEEE---HHH---HHHHHTTTCEEEEE-----CCHHHHH
T ss_pred H-----------------------------------hc--cCCCC---HHH---HHHHHhcCCeEEEE-----ECHHHHH
Confidence 0 00 00111 222 34555668999999 9999999
Q ss_pred HHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHHHHHHh
Q 010509 225 QILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNYFAS 281 (508)
Q Consensus 225 ~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~ 281 (508)
++.+.+. ++.||++++|+++. +.+ |+ +.+| .++++++...+..
T Consensus 122 ~i~~~l~----~~~tI~i~th~~~~-l~~---Rl--~~rG----~~~~e~i~~rl~~ 164 (219)
T 1s96_A 122 QIRQKMP----HARSIFILPPSKIE-LDR---RL--RGRG----QDSEEVIAKRMAQ 164 (219)
T ss_dssp HHHHHCT----TCEEEEEECSSHHH-HHH---HH--HTTS----CSCHHHHHHHHHH
T ss_pred HHHHHcc----CCEEEEEECCCHHH-HHH---HH--HHcC----CCCHHHHHHHHHH
Confidence 9999876 58999999999864 332 43 6778 6788887766653
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-18 Score=182.71 Aligned_cols=162 Identities=15% Similarity=0.165 Sum_probs=98.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCccc--EEEECCEeC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRING--RITYNGKPF 115 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G--~I~~~G~~~ 115 (508)
.++++||++++. .+.+++|+||+| +|+||||||||||+|+|+|...+..| .+.+++.+
T Consensus 11 ~l~~~~l~~~y~-------------~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~- 70 (418)
T 2qag_C 11 YVGFANLPNQVY-------------RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK- 70 (418)
T ss_dssp ----CCCCCCTT-------------TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC------
T ss_pred cEEEEecceeEC-------------CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc-
Confidence 477888876643 467999999998 99999999999999999998764444 22222111
Q ss_pred ChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 116 SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 116 ~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
....+.+++++|++.+++.+|+.||+.+..... ..+..+.+.+.++ ..++.+++||
T Consensus 71 -t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~-----------------~~~~~~l~qr 126 (418)
T 2qag_C 71 -TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD------NSNCWQPVIDYID-----------------SKFEDYLNAE 126 (418)
T ss_dssp -CCEEEEEECC------CEEEEEEECC-----------------CHHHHHHHH-----------------HHHHHHTTTS
T ss_pred -ceeeeeEEEEEecCCcccceeeeechhhhhhcc------chhhHHHHHHHHH-----------------HHHHHHHHHH
Confidence 112356899999998888899999987754321 1111111222221 1467788899
Q ss_pred HHHHHHHhhCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcc
Q 010509 196 VSIGQEILINPS---LLFLDEPT-SGLDSTIAQQILSILLKLANGGRTIVMTIHQPS 248 (508)
Q Consensus 196 v~Ia~aL~~~P~---illLDEPt-sgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~ 248 (508)
++||++++.+|+ +|++|||| .|||+... +.++++.. +.+||+++|..+
T Consensus 127 ~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 127 SRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp CC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEESTT
T ss_pred HHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEccc
Confidence 999999999999 99999999 69998873 44555543 788888888643
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-19 Score=169.52 Aligned_cols=172 Identities=12% Similarity=0.100 Sum_probs=114.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCH
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTE 156 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~ 156 (508)
|++++|+||||||||||+++|++ +.+|.+.++|.++... ...++++|.....+..|+++++.+.+........
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-- 74 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM--VVGGYRPPWESDELLALTWKNITDLTVNFLLAQN-- 74 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT--CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh--hccccccCccchhHHHHHHHHHHHHHHHHHhcCC--
Confidence 78999999999999999999997 5678999998765321 2356777765444556788887665422100000
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCcc--CHHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 010509 157 KEKIKCAEAVMTELGLSECKNSLIGGPLTRGV--SGGERKRVSIGQ------EILINPSLLFLDEPTSGLDSTIAQQILS 228 (508)
Q Consensus 157 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L--SGGerqRv~Ia~------aL~~~P~illLDEPtsgLD~~~~~~i~~ 228 (508)
..+++.+. ....... .+.+ |+|++|++.++. +++.+|+...+|| +||+..... .+
T Consensus 75 -------~~ild~~~-~~~~~~~-----~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~ 137 (189)
T 2bdt_A 75 -------DVVLDYIA-FPDEAEA-----LAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VE 137 (189)
T ss_dssp -------EEEEESCC-CHHHHHH-----HHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HH
T ss_pred -------cEEEeecc-CHHHHHH-----HHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HH
Confidence 00111100 0000000 1234 889988888888 9999999888884 899988888 88
Q ss_pred HHHHHHcCCCEEEEEecC-cchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 229 ILLKLANGGRTIVMTIHQ-PSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 229 ~L~~l~~~g~tii~s~H~-~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
.++.+.+.+.++|.++|+ ++ .+.+.+|+|+ ++|+++..|+++-.
T Consensus 138 ~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 138 EFESKGIDERYFYNTSHLQPT-NLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp HHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--HCGGGSCC------
T ss_pred HHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--hCCcEEEeecCCch
Confidence 888887668899999998 76 4778899998 99999999987644
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.4e-16 Score=147.96 Aligned_cols=154 Identities=19% Similarity=0.221 Sum_probs=101.4
Q ss_pred eeeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHH
Q 010509 65 AILKGIT-GMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 65 ~iL~~vs-~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
+.|+++. +-+++|++++|.||||||||||++.|++ ...+ .+.|+..+..+ +.. .+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~---------------~v~~i~~~~~~----~~~-~~~ 63 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LSGK---------------KVAYVDTEGGF----SPE-RLV 63 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCS---------------EEEEEESSCCC----CHH-HHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCC---------------cEEEEECCCCC----CHH-HHH
Confidence 4567766 4799999999999999999999999998 1112 23344433311 211 111
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH--HHHHHHHHHHhhC-CCEEEEeCCCCCCCH
Q 010509 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE--RKRVSIGQEILIN-PSLLFLDEPTSGLDS 220 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe--rqRv~Ia~aL~~~-P~illLDEPtsgLD~ 220 (508)
-... .. .... +++++.+. + ...|+++ ++++..+++++.+ |+++++||||+.+|+
T Consensus 64 ~~~~-~~--~~~~-------~~~~~~~~--------~-----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 64 QMAE-TR--GLNP-------EEALSRFI--------L-----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRA 120 (220)
T ss_dssp HHHH-TT--TCCH-------HHHHHHEE--------E-----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTG
T ss_pred HHHH-hc--CCCh-------HHHhhcEE--------E-----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhh
Confidence 1000 00 1111 11222221 1 1345554 5688888899986 999999999999997
Q ss_pred HH--------HHHHHHHHHHHHcC-CCEEEEEecCcch------------HHHhhccEEEEEeCC
Q 010509 221 TI--------AQQILSILLKLANG-GRTIVMTIHQPSN------------MLYYMFHKVLLLSEG 264 (508)
Q Consensus 221 ~~--------~~~i~~~L~~l~~~-g~tii~s~H~~~~------------~~~~~~D~v~lL~~G 264 (508)
.. ..++++.|++++++ |.|||+++|.... .+.+.+|++++|++.
T Consensus 121 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 121 EENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 43 35566778888764 8999999998652 467899999999854
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-18 Score=162.74 Aligned_cols=153 Identities=12% Similarity=0.064 Sum_probs=98.0
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--hccccEEEEecCCCCCCCCCHHHHHHHHHHhcC
Q 010509 73 MVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQL 150 (508)
Q Consensus 73 ~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~ 150 (508)
.+++|++++|+||||||||||+++|+|+ +..|.|.++|.++.. ..++.++|++|+.. +.+|+.|++.+.+....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~~ 80 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRYA 80 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHHh
Confidence 3679999999999999999999999998 678999999876532 11234677777544 45788888876542210
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 010509 151 PNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSIL 230 (508)
Q Consensus 151 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L 230 (508)
.... ...++.+++.+++....+. +..+..+|+|++||+.++|++..+|+++ +|+.....+.+.+
T Consensus 81 ~~~~-----~~~~~~~~~~~~l~~~~~~---~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~ 144 (191)
T 1zp6_A 81 KEGY-----FVILDGVVRPDWLPAFTAL---ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQF 144 (191)
T ss_dssp HTSC-----EEEECSCCCTTTTHHHHTT---CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHT
T ss_pred ccCC-----eEEEeccCcHHHHHHHHhc---CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHH
Confidence 0000 0000111111122211100 1112479999999999999999999876 6888888887777
Q ss_pred HHHHcCCCEEEEEec
Q 010509 231 LKLANGGRTIVMTIH 245 (508)
Q Consensus 231 ~~l~~~g~tii~s~H 245 (508)
+.+.+.+..+|-++|
T Consensus 145 ~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 145 ADLGAFEHHVLPVSG 159 (191)
T ss_dssp TCCGGGGGGEEECTT
T ss_pred hccCcccccEEECCC
Confidence 666443334444443
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.61 E-value=5.8e-19 Score=172.44 Aligned_cols=147 Identities=20% Similarity=0.209 Sum_probs=103.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHh---cCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcC--
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALG---GRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQL-- 150 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~---g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~-- 150 (508)
++++++|+||||||||||+++|+ |+..++.|+|.++|.+......+.+.+++|+..+++..|+.|++........
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~ 105 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ 105 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 47999999999999999999999 9998999999888765432333445667788888888899999976432100
Q ss_pred ---CCCCCHHHHHHHHHHHHH--HcC------------CCcccccccCCCCCCccCHHHHHHHHHHHHH-hhCCCEEEEe
Q 010509 151 ---PNSFTEKEKIKCAEAVMT--ELG------------LSECKNSLIGGPLTRGVSGGERKRVSIGQEI-LINPSLLFLD 212 (508)
Q Consensus 151 ---~~~~~~~~~~~~v~~~l~--~lg------------L~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL-~~~P~illLD 212 (508)
-.+.+... +.++.+.+ ..+ +....++.+ ..||| |+ +++ +.+|++++||
T Consensus 106 ~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~-----~~lSg----rv---~al~~~~P~~lllD 171 (246)
T 2bbw_A 106 HWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWI-----HPPSG----RV---YNLDFNPPHVHGID 171 (246)
T ss_dssp CEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEE-----ETTTT----EE---EETTTSCCSSTTBC
T ss_pred eEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCC-----cCCCC----Cc---cccccCCCcccccc
Confidence 00111111 11222221 122 122223333 47898 66 677 9999999999
Q ss_pred ----CCCCCCCHHHHHHHHHHHHHHHcC
Q 010509 213 ----EPTSGLDSTIAQQILSILLKLANG 236 (508)
Q Consensus 213 ----EPtsgLD~~~~~~i~~~L~~l~~~ 236 (508)
|||+|||..+...+.+.++++.++
T Consensus 172 ~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 172 DVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp TTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred cccccccccCCCCcHHHHHHHHHHHHHh
Confidence 999999999999999999988764
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=9.9e-17 Score=166.63 Aligned_cols=130 Identities=16% Similarity=0.306 Sum_probs=98.3
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCc-ccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHH
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI-NGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~-~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
.+|++++ +++|++++|+||||||||||+++|+|.+++. +|+|.+.|.++....++.++||+|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~------------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQRE------------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEE-------------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeee-------------
Confidence 3567766 7899999999999999999999999998877 89998877665433456678888841
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 010509 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIA 223 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~ 223 (508)
+|+.. ..+ +.+|+++|..+|+++++|||+ |+.+.
T Consensus 191 --------------------------~g~~~-----------~~~------~~~l~~~L~~~pd~illdE~~---d~e~~ 224 (372)
T 2ewv_A 191 --------------------------VGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLETV 224 (372)
T ss_dssp --------------------------BTTTB-----------SCS------HHHHHHHTTSCCSEEEESCCC---SHHHH
T ss_pred --------------------------cCCCH-----------HHH------HHHHHHHhhhCcCEEEECCCC---CHHHH
Confidence 12211 134 469999999999999999999 77654
Q ss_pred HHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 224 QQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 224 ~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
.. .++. +..|.+++.|+|+.+ +...+||++.|
T Consensus 225 ~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l 256 (372)
T 2ewv_A 225 ET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDI 256 (372)
T ss_dssp HH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHT
T ss_pred HH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHh
Confidence 43 3443 456899999999965 55667776544
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.2e-15 Score=139.01 Aligned_cols=90 Identities=17% Similarity=0.268 Sum_probs=73.1
Q ss_pred CCccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEE
Q 010509 185 TRGVSGGERKRVSIGQEILI----NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLL 260 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~----~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~l 260 (508)
+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++.+ +.++|++||+.. ....+|+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~~--~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRDV--MMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCHH--HHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecHH--HHHhCCEEEE
Confidence 46899999999999999975 4699999999999999999999999999865 468999999963 5688999986
Q ss_pred Ee--CCeE-EEEcChhhHHH
Q 010509 261 LS--EGYP-LYSGEASGAMN 277 (508)
Q Consensus 261 L~--~G~i-v~~G~~~~~~~ 277 (508)
+. +|.. +...+.++..+
T Consensus 139 v~~~~g~s~~~~~~~~~~~~ 158 (173)
T 3kta_B 139 VSMRDGVSKVVSLSLEKAMK 158 (173)
T ss_dssp EEEETTEEEEEECCHHHHHH
T ss_pred EEecCCEEEEEEEEcHHHHH
Confidence 64 6643 34445444443
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-16 Score=168.11 Aligned_cols=166 Identities=15% Similarity=0.163 Sum_probs=112.1
Q ss_pred cceeeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC----hhccccEEEEecCCCCCCCC
Q 010509 63 EKAILKGITGMVKPGEM--LAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS----NQMTRNTGFVTQEDVLSPYL 136 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~--~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~----~~~~~~i~yv~Q~~~l~~~l 136 (508)
..+ |+++|+++++|++ ++|+||||||||||+|+|+|.. ++|.++. ...++.++|++|++.+++.+
T Consensus 27 ~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~l 97 (427)
T 2qag_B 27 SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQSNTYDLQESNVRLKL 97 (427)
T ss_dssp --C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEEEEEEEEC--CEEEE
T ss_pred Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEeeEEEEeecCcccccc
Confidence 455 9999999999999 9999999999999999999984 2232221 12345799999999988899
Q ss_pred CHHHHHHHHHHhcCCCCCCHH--------HHHHHHHHHHHHc-CCCc----ccccc----cC--CCCCCccCHHHHHHHH
Q 010509 137 TVTETMVFTALLQLPNSFTEK--------EKIKCAEAVMTEL-GLSE----CKNSL----IG--GPLTRGVSGGERKRVS 197 (508)
Q Consensus 137 Tv~E~l~~~~~l~~~~~~~~~--------~~~~~v~~~l~~l-gL~~----~~~~~----vg--~~~~~~LSGGerqRv~ 197 (508)
||.||+.++.. .+.. ...+..++.|+.. ++.. ..|+. +. .+..++++-.+ +.
T Consensus 98 tv~D~~~~g~~------~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ie 168 (427)
T 2qag_B 98 TIVSTVGFGDQ------INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LV 168 (427)
T ss_dssp EEEEEECCCC-------CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HH
T ss_pred chhhhhhhhhc------cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HH
Confidence 99999866432 1111 1233455566654 5432 12222 10 01113566666 78
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHcCCCEEEEEecC
Q 010509 198 IGQEILINPSLLFLDEPTSGLDSTIAQQILSILLK-LANGGRTIVMTIHQ 246 (508)
Q Consensus 198 Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~-l~~~g~tii~s~H~ 246 (508)
|+++|..+++++++|||+..|.+.....+.+.+++ +...|..|+.++.+
T Consensus 169 ilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 169 TMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 99999999999999999999999999999999987 77789999888754
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.58 E-value=6.9e-16 Score=158.91 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=90.1
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-CcccEEEEC-CEeCChhccccEEEEecCCCCCCCCCHHHHHHH
Q 010509 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-RINGRITYN-GKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVF 144 (508)
Q Consensus 67 L~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-~~~G~I~~~-G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~ 144 (508)
+++++.. .+|++++|+||||||||||+|+|+|... +.+|+|.++ |+......++.+++++|+..++++.|++|+
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~--- 281 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF--- 281 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTC---
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh---
Confidence 5566653 4899999999999999999999999998 999999987 766544445679999999999998899884
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHH
Q 010509 145 TALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEI 202 (508)
Q Consensus 145 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL 202 (508)
. + ...++++..+++.++++.+|+.+..|.... ++| ||+||++||+++
T Consensus 282 ~--l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~-----~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 G--L---WHLEPEQITQGFVEFHDYLGHCKYRDCKHD-----ADP-GCAIREAVENGA 328 (358)
T ss_dssp C--C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCSS-----SCT-TCHHHHHHHHTS
T ss_pred h--h---cCCCHHHHHHHHHHHHHHcCCchhcCCCcc-----cCC-HHHHHHHHHhcC
Confidence 1 1 134566667778899999999888776654 899 999999999764
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.7e-19 Score=181.01 Aligned_cols=161 Identities=12% Similarity=0.107 Sum_probs=108.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCC--------CCcccEEEECCEeCCh-------------------hccccEEEE---
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRL--------GRINGRITYNGKPFSN-------------------QMTRNTGFV--- 126 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~--------~~~~G~I~~~G~~~~~-------------------~~~~~i~yv--- 126 (508)
=++++|+|+||||||||||.|.|.. .++.|+|.++|.++.. .+++.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 3689999999999999999999986 6799999999988642 123346666
Q ss_pred ecCCCCCCCCCHHHHHHHHHHhcCCCCC---CHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHh
Q 010509 127 TQEDVLSPYLTVTETMVFTALLQLPNSF---TEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEIL 203 (508)
Q Consensus 127 ~Q~~~l~~~lTv~E~l~~~~~l~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~ 203 (508)
+|+..+++..++.|+..++......... +......+++.++..+++.+..++.. ++|+||+||+..++.++
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill 157 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILL 157 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEE
T ss_pred HhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEE
Confidence 5776666677777776542100000000 00001111222344455555554443 68999999999888888
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhcc
Q 010509 204 INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFH 256 (508)
Q Consensus 204 ~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D 256 (508)
++|+++ ||| .++.+.|+++. .+.||++++|++.+ ...++|
T Consensus 158 ~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~-~~~l~~ 197 (318)
T 1nij_A 158 TKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDID-LGLLFN 197 (318)
T ss_dssp ECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCCC-GGGGSC
T ss_pred ECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCCC-HHHHhC
Confidence 999887 998 77888888874 58999999998653 334443
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.3e-16 Score=162.08 Aligned_cols=137 Identities=17% Similarity=0.166 Sum_probs=103.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC-Ch-hccccEEEEe-cCCCCCCCCCHHHHH
Q 010509 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF-SN-QMTRNTGFVT-QEDVLSPYLTVTETM 142 (508)
Q Consensus 66 iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~-~~-~~~~~i~yv~-Q~~~l~~~lTv~E~l 142 (508)
+++++|+.+++|++++|+||||||||||+|+|+|+++|++|.|.++|.+- .. ..++.++|++ |++.+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~---------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKE---------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC---------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCcccc----------
Confidence 34999999999999999999999999999999999999999999998532 11 2456788988 54321
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 010509 143 VFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTI 222 (508)
Q Consensus 143 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~ 222 (508)
+++++..+|..|+.++..+|+.+++|||..
T Consensus 234 --------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~------ 263 (361)
T 2gza_A 234 --------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG------ 263 (361)
T ss_dssp -------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS------
T ss_pred --------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH------
Confidence 012333466677777888899999999986
Q ss_pred HHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 223 AQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 223 ~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
.++.+.|+.+.....|++.++|..+ ....+||+..|..|.
T Consensus 264 -~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 -GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp -THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred -HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 3456677777654568899999965 557789999988764
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=5.6e-18 Score=175.32 Aligned_cols=162 Identities=15% Similarity=0.091 Sum_probs=103.4
Q ss_pred eeeceEEEEeC--CeEEEEECCCCCcHHHHHHHHhcCCCCcc----cEEEEC----CEeCC---hhccccEEEEecCCCC
Q 010509 66 ILKGITGMVKP--GEMLAMLGPSGCGKTTLLTALGGRLGRIN----GRITYN----GKPFS---NQMTRNTGFVTQEDVL 132 (508)
Q Consensus 66 iL~~vs~~v~~--Ge~~ailG~nGsGKSTLL~~L~g~~~~~~----G~I~~~----G~~~~---~~~~~~i~yv~Q~~~l 132 (508)
+.+.|++.|++ |+.++|+||||||||||+++|+|++++++ |+|.++ |.+.. ... +.+++++|+..+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~ 235 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYID 235 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHH
Confidence 45789999999 99999999999999999999999999988 777664 22210 001 112333222110
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHh-hCCCEEEE
Q 010509 133 SPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEIL-INPSLLFL 211 (508)
Q Consensus 133 ~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~-~~P~illL 211 (508)
++ .|+.||+.+ +..+..++.+ ..+|+|++||..+++++. .+|++++|
T Consensus 236 ~~-~t~~~nl~~--------------------------~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~lllL 283 (365)
T 1lw7_A 236 YA-VRHSHKIAF--------------------------IDTDFITTQA-----FCIQYEGKAHPFLDSMIKEYPFDVTIL 283 (365)
T ss_dssp HH-HHHCSSEEE--------------------------ESSCHHHHHH-----HHHHHHSCCCHHHHHHHHHSCCSEEEE
T ss_pred HH-HhccCCEEE--------------------------EeCCchHHHH-----HHHHHcCCCCHHHHHHHhhcCCCEEEE
Confidence 00 111111100 0011111111 246777888888887775 59999999
Q ss_pred eC---CC------CCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 212 DE---PT------SGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 212 DE---Pt------sgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
|| |+ .++|...+..+.+.|+++.+ .|.+|++++|. + ...+++|++.+++
T Consensus 284 dE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 284 LKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp EECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred CCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 99 65 58999999999999999754 48899999975 3 3556677666554
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.53 E-value=6.4e-15 Score=142.05 Aligned_cols=150 Identities=17% Similarity=0.271 Sum_probs=86.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhc--CCCC-----cccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHH
Q 010509 72 GMVKPGEMLAMLGPSGCGKTTLLTALGG--RLGR-----INGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVF 144 (508)
Q Consensus 72 ~~v~~Ge~~ailG~nGsGKSTLL~~L~g--~~~~-----~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~ 144 (508)
+-+++|++++|+||||||||||++.|++ ..++ ..|.+++++.+. + ...+....
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~----------------~----~~~~~~~~ 78 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT----------------F----RPERLLAV 78 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC----------------C----CHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC----------------c----CHHHHHHH
Confidence 5699999999999999999999999999 4444 455666655431 0 11110001
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH-HHHHHHHh--hCCCEEEEeCCCCCCCHH
Q 010509 145 TALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR-VSIGQEIL--INPSLLFLDEPTSGLDST 221 (508)
Q Consensus 145 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR-v~Ia~aL~--~~P~illLDEPtsgLD~~ 221 (508)
...+ ....+ ++++.+.+ ....+..+... +.-+.+++ .+|+++++|||++.+|+.
T Consensus 79 ~~~~----g~~~~-------~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~ 135 (243)
T 1n0w_A 79 AERY----GLSGS-------DVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTD 135 (243)
T ss_dssp HHHT----TCCHH-------HHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC--
T ss_pred HHHc----CCCHH-------HHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHH
Confidence 0011 01111 11121100 01344444332 23233443 489999999999999985
Q ss_pred -------H-----HHHHHHHHHHHHcC-CCEEEEEecCcchH------------------HHhhccEEEEEeCC
Q 010509 222 -------I-----AQQILSILLKLANG-GRTIVMTIHQPSNM------------------LYYMFHKVLLLSEG 264 (508)
Q Consensus 222 -------~-----~~~i~~~L~~l~~~-g~tii~s~H~~~~~------------------~~~~~D~v~lL~~G 264 (508)
. ..++++.|++++++ |.|||+++|..... +.+.+|++++|++|
T Consensus 136 ~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 136 YSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred hcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 3 34566677777654 99999999965431 22379999999865
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-16 Score=145.65 Aligned_cols=80 Identities=19% Similarity=0.129 Sum_probs=68.4
Q ss_pred ccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHH
Q 010509 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTET 141 (508)
Q Consensus 62 ~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~ 141 (508)
+++.+++++|+++++|++++|+||||||||||+|+|+|.+ |++|+|.++|.++....... .+++|+..++ .+||.|+
T Consensus 18 g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~-~~~~q~~~l~-~ltv~e~ 94 (158)
T 1htw_A 18 GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIA-GKMIYHFDLY-RLADPEE 94 (158)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEET-TEEEEEEECT-TCSCTTH
T ss_pred HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCC-Ccceeccccc-cCCcHHH
Confidence 3567899999999999999999999999999999999998 89999999998774322111 2899998888 8999999
Q ss_pred HHH
Q 010509 142 MVF 144 (508)
Q Consensus 142 l~~ 144 (508)
+.+
T Consensus 95 l~~ 97 (158)
T 1htw_A 95 LEF 97 (158)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3.3e-16 Score=166.71 Aligned_cols=152 Identities=13% Similarity=0.116 Sum_probs=106.9
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--------h--ccccEEEEecCCCCCCCC
Q 010509 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--------Q--MTRNTGFVTQEDVLSPYL 136 (508)
Q Consensus 67 L~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--------~--~~~~i~yv~Q~~~l~~~l 136 (508)
-+++|+++++|++++|+|+||||||||+++|+|++.+.+|+|.++|.+... . .++.++|++|+..+++.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 368999999999999999999999999999999998889999998877532 1 245799999998888889
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHh-hCC-CEEEEeCC
Q 010509 137 TVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEIL-INP-SLLFLDEP 214 (508)
Q Consensus 137 Tv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~-~~P-~illLDEP 214 (508)
|+++++.++..-. .+ . -+++..|+.+... .+-.--+|++.+++++. ..| .++|...|
T Consensus 363 tV~e~l~~a~~~~----~D------v--VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvLDa 421 (503)
T 2yhs_A 363 VIFDAIQAAKARN----ID------V--LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTIDA 421 (503)
T ss_dssp HHHHHHHHHHHTT----CS------E--EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEEEG
T ss_pred HHHHHHHHHHhcC----CC------E--EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEecC
Confidence 9999998864311 00 0 0122233322211 11122357888888764 457 45656568
Q ss_pred CCCCCHHHHHHHHHHHHHHHc-CCCEEEEEec
Q 010509 215 TSGLDSTIAQQILSILLKLAN-GGRTIVMTIH 245 (508)
Q Consensus 215 tsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H 245 (508)
|+|.|.. +.++.+.+ -|.|.++.||
T Consensus 422 ttGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 422 STGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp GGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred cccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 8886654 33444443 4889999999
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-15 Score=154.60 Aligned_cols=162 Identities=12% Similarity=0.145 Sum_probs=109.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--------hcc--ccEEEEecCCCCCCCCCHHHHHH
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--------QMT--RNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--------~~~--~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
.++|++++|+||||||||||++.|+|++.+.+|+|.+.|.++.. .++ ..+.+++|+..+.|.+||+|++.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 36899999999999999999999999999999999999998742 112 24669999999999999999998
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 010509 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIA 223 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~ 223 (508)
++..... . . .+++..|+.+..+..+ .+|| .+++++..++++++||.+|.
T Consensus 206 ~~~~~~~--d--------~--vliDtaG~~~~~~~l~-----~eL~-------~i~ral~~de~llvLDa~t~------- 254 (328)
T 3e70_C 206 HAKARGI--D--------V--VLIDTAGRSETNRNLM-----DEMK-------KIARVTKPNLVIFVGDALAG------- 254 (328)
T ss_dssp HHHHHTC--S--------E--EEEEECCSCCTTTCHH-----HHHH-------HHHHHHCCSEEEEEEEGGGT-------
T ss_pred HHHhccc--h--------h--hHHhhccchhHHHHHH-----HHHH-------HHHHHhcCCCCEEEEecHHH-------
Confidence 7532110 0 0 0122233333222221 2333 38888888888888885543
Q ss_pred HHHHHHHHHHHc-CCCEEEEEecCcch--------HHHhhccEEEEEeCCeE
Q 010509 224 QQILSILLKLAN-GGRTIVMTIHQPSN--------MLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 224 ~~i~~~L~~l~~-~g~tii~s~H~~~~--------~~~~~~D~v~lL~~G~i 266 (508)
.++++.++.+.+ .+.|+|++||.... ......-.|..+..|+-
T Consensus 255 ~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~ 306 (328)
T 3e70_C 255 NAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQG 306 (328)
T ss_dssp THHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSS
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCC
Confidence 356666677664 58999999996421 12233345666666643
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.1e-17 Score=168.21 Aligned_cols=162 Identities=15% Similarity=0.150 Sum_probs=110.7
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--------hccccEEEEecCCCCCC
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--------QMTRNTGFVTQEDVLSP 134 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--------~~~~~i~yv~Q~~~l~~ 134 (508)
.+.+|+++|+++++|++++|+||||||||||+|+|+|.+.|++|+|.+.|.++.. ..++.++|++|++.+++
T Consensus 41 ~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 41 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFI 120 (337)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEE
T ss_pred hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCccccc
Confidence 3568999999999999999999999999999999999998899999999988732 23567899999988775
Q ss_pred CCC------------HHHHHHHHH-----------------------------HhcCCCCCCHHHHH---HHHHHHHHHc
Q 010509 135 YLT------------VTETMVFTA-----------------------------LLQLPNSFTEKEKI---KCAEAVMTEL 170 (508)
Q Consensus 135 ~lT------------v~E~l~~~~-----------------------------~l~~~~~~~~~~~~---~~v~~~l~~l 170 (508)
..+ +.|.+.... .+..+. ...+.+ +.+.+....+
T Consensus 121 ~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~--~~~~~~~i~~~i~~~~~iv 198 (337)
T 2qm8_A 121 RPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG--AGDELQGIKKGIFELADMI 198 (337)
T ss_dssp ECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC--C------CCTTHHHHCSEE
T ss_pred ccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC--CcccHHHHHHHHhccccEE
Confidence 321 233321100 000000 001100 0111111112
Q ss_pred CCCcccccccCCCCCCccCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc
Q 010509 171 GLSECKNSLIGGPLTRGVSGGERKRVSIGQEILI------NPSLLFLDEPTSGLDSTIAQQILSILLKLAN 235 (508)
Q Consensus 171 gL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~------~P~illLDEPtsgLD~~~~~~i~~~L~~l~~ 235 (508)
.+ +..|.. ..+.+|+|++|++..+++++. +|++++ ||++|.....++++.|.++.+
T Consensus 199 vl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 199 AV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 22 112211 124689999999999999987 688887 999999999999999988753
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=143.47 Aligned_cols=75 Identities=24% Similarity=0.356 Sum_probs=67.0
Q ss_pred CCccCHHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccE
Q 010509 185 TRGVSGGERKRV------SIGQEILIN-PSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHK 257 (508)
Q Consensus 185 ~~~LSGGerqRv------~Ia~aL~~~-P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~ 257 (508)
+..+|||||||+ ++|++|+.+ |++++|||||+|||+..+..+.+.|+++.+ +.+||++||++. +...+|+
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~~--~~~~~d~ 354 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHRE--LEDVADV 354 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCGG--GGGGCSE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChHH--HHhhCCE
Confidence 468999999988 567888999 999999999999999999999999999753 468999999974 5688999
Q ss_pred EEEEe
Q 010509 258 VLLLS 262 (508)
Q Consensus 258 v~lL~ 262 (508)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-15 Score=140.10 Aligned_cols=114 Identities=20% Similarity=0.167 Sum_probs=78.8
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcC
Q 010509 71 TGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQL 150 (508)
Q Consensus 71 s~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~ 150 (508)
++.+++|+.++|.||||+|||||+++|++...+.+|.. +.| +++.+.+...
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~--------------~~~----------~~~~~~~~~~----- 82 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR--------------GYF----------FDTKDLIFRL----- 82 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC--------------CCE----------EEHHHHHHHH-----
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe--------------EEE----------EEHHHHHHHH-----
Confidence 35567899999999999999999999999875444421 111 2233322111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHH
Q 010509 151 PNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTS-GLDSTIAQQILSI 229 (508)
Q Consensus 151 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPts-gLD~~~~~~i~~~ 229 (508)
......- ... -....+.+|++|++|||++ ++|+..+..+.++
T Consensus 83 -------------~~~~~~~----------------~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~l 125 (180)
T 3ec2_A 83 -------------KHLMDEG----------------KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYI 125 (180)
T ss_dssp -------------HHHHHHT----------------CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHH
T ss_pred -------------HHHhcCc----------------hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHH
Confidence 0001100 000 1123345999999999985 9999999999999
Q ss_pred HHHHHcCCCEEEEEecCcchH
Q 010509 230 LLKLANGGRTIVMTIHQPSNM 250 (508)
Q Consensus 230 L~~l~~~g~tii~s~H~~~~~ 250 (508)
+.+..++|+++|++||.+...
T Consensus 126 l~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 126 ITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHHHHTTCEEEEECCCCSCC
T ss_pred HHHHHHcCCCEEEEcCCChhH
Confidence 999887899999999998653
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-15 Score=151.45 Aligned_cols=121 Identities=16% Similarity=0.191 Sum_probs=84.9
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEE---CCEeCCh---hcc-ccEEEEecCCCCC-----CCCCHHHH
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITY---NGKPFSN---QMT-RNTGFVTQEDVLS-----PYLTVTET 141 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~---~G~~~~~---~~~-~~i~yv~Q~~~l~-----~~lTv~E~ 141 (508)
+.+|++++|+||||||||||+|+|+ +..+.+|+|.+ +|++.+. ..+ +.+||++|++.+. +.+|+ |+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~ 239 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-RE 239 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HH
Confidence 3469999999999999999999999 98999999999 9988753 122 3689999998653 78899 88
Q ss_pred H--HHHH----HhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCccCHHHHHHHHHHHH
Q 010509 142 M--VFTA----LLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTRGVSGGERKRVSIGQE 201 (508)
Q Consensus 142 l--~~~~----~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~Ia~a 201 (508)
+ .|.. .++........+...+++++++.++|.+ ..+++. +.|||.++|++.|||+
T Consensus 240 l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 240 VRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 7 4431 0111111112233457889999999986 666665 4899999999999874
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.4e-16 Score=145.29 Aligned_cols=135 Identities=19% Similarity=0.229 Sum_probs=88.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCc---ccEEEECCEeCC-------hhcc-ccEE----EEecCCCCCCCCCHHHHH
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRLGRI---NGRITYNGKPFS-------NQMT-RNTG----FVTQEDVLSPYLTVTETM 142 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~~~~---~G~I~~~G~~~~-------~~~~-~~i~----yv~Q~~~l~~~lTv~E~l 142 (508)
++++|+|+||||||||++.|+|++.+. .|.|.++|.++. ..++ +.+| +++|+..++ +.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 579999999999999999999998776 899999998742 1333 3466 888876654 100
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHH-cCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEE-------EEeCC
Q 010509 143 VFTALLQLPNSFTEKEKIKCAEAVMTE-LGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLL-------FLDEP 214 (508)
Q Consensus 143 ~~~~~l~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~il-------lLDEP 214 (508)
. .. +....++++++. +. -.|+.++. +||||||||++|||+++.+|++. .-|.|
T Consensus 77 --------~---~~-~~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 --------V---SE-EEGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp --------C---CH-HHHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred --------C---Ch-hhhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 0 11 111234556665 43 35788873 69999999999999999999873 22454
Q ss_pred CCC---CCHHHHHHHHHHHHHHHcCC
Q 010509 215 TSG---LDSTIAQQILSILLKLANGG 237 (508)
Q Consensus 215 tsg---LD~~~~~~i~~~L~~l~~~g 237 (508)
..+ +|......+.+.+.+...+|
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cccCcccCcccHHHHHHHHHHHHhcc
Confidence 322 33445567777776665554
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-14 Score=130.15 Aligned_cols=97 Identities=19% Similarity=0.356 Sum_probs=72.2
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHH
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVF 144 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~ 144 (508)
.+|+++ +|+.++|+||||+|||||+++|++...+ +| ..+.|+...+....
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g--------------~~~~~~~~~~~~~~---------- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AG--------------KNAAYIDAASMPLT---------- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TT--------------CCEEEEETTTSCCC----------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cC--------------CcEEEEcHHHhhHH----------
Confidence 456676 8999999999999999999999997754 35 01233333221100
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 010509 145 TALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQ 224 (508)
Q Consensus 145 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~ 224 (508)
+++.+|++|++|||++ +|...+.
T Consensus 79 --------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~ 101 (149)
T 2kjq_A 79 --------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQA 101 (149)
T ss_dssp --------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHH
T ss_pred --------------------------------------------------------HHHhCCCEEEEeCccc-cChHHHH
Confidence 1245799999999998 6655588
Q ss_pred HHHHHHHHHHcCCCE-EEEEecCcc
Q 010509 225 QILSILLKLANGGRT-IVMTIHQPS 248 (508)
Q Consensus 225 ~i~~~L~~l~~~g~t-ii~s~H~~~ 248 (508)
.+.+++.++.++|++ +|+++|.+.
T Consensus 102 ~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 102 LLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp HHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred HHHHHHHHHHHcCCcEEEEECCCCH
Confidence 899999998877888 899999654
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-13 Score=141.13 Aligned_cols=181 Identities=14% Similarity=0.130 Sum_probs=96.2
Q ss_pred EEEECCCCCcHHHHHHHHhc-CCCCcccEEEECCEeCCh--hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCH
Q 010509 80 LAMLGPSGCGKTTLLTALGG-RLGRINGRITYNGKPFSN--QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTE 156 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g-~~~~~~G~I~~~G~~~~~--~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~ 156 (508)
+.|.||||+|||||+++|++ +..+..|++.++|.+... ..+..+++++|.+.+.-..+ + . .....
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~---~~~~~ 106 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------M---GNNDR 106 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----------------CCH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHh--h-------c---CCcch
Confidence 89999999999999999999 678899999999987642 22456888888764321110 0 0 00011
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC
Q 010509 157 KEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG 236 (508)
Q Consensus 157 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~ 236 (508)
. .+++.++.+.-....+... .+|| +..+|+++++|||++ ||+.++..+++.|.+.. .
T Consensus 107 ~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~ 163 (354)
T 1sxj_E 107 I----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-K 163 (354)
T ss_dssp H----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST-T
T ss_pred H----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-C
Confidence 1 2233333332111111111 3566 788999999999999 99999999999998864 3
Q ss_pred CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh--hhHHHHHH----hcCCCCCCCCChHHHHHHhhcC
Q 010509 237 GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA--SGAMNYFA----SIGYCPSVPTNPSDFLLDLASG 302 (508)
Q Consensus 237 g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~--~~~~~~f~----~~g~~~p~~~npad~~~~~~~~ 302 (508)
+.++|+++|++......+-+|. ..+...++ +++.++.. ..|...+. ..-.+.+.+...+
T Consensus 164 ~~~~Il~t~~~~~l~~~l~sR~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~l~~i~~~~~G 228 (354)
T 1sxj_E 164 NIRLIMVCDSMSPIIAPIKSQC------LLIRCPAPSDSEISTILSDVVTNERIQLET-KDILKRIAQASNG 228 (354)
T ss_dssp TEEEEEEESCSCSSCHHHHTTS------EEEECCCCCHHHHHHHHHHHHHHHTCEECC-SHHHHHHHHHHTT
T ss_pred CCEEEEEeCCHHHHHHHHHhhc------eEEecCCcCHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHcCC
Confidence 6899999999875333333433 34444443 34444443 33443220 1234555555543
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=3e-14 Score=149.80 Aligned_cols=167 Identities=15% Similarity=0.136 Sum_probs=99.2
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHH--
Q 010509 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVF-- 144 (508)
Q Consensus 67 L~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~-- 144 (508)
-+++++++++|+.++|+|+|||||||||++|+|..+ .+.+.+.+. ....+++|.+++. ..+++.++.-+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftT-l~p~~G~V~~~~~--~~~~l~DtpGli~ 217 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTT-LSPNLGVVEVSEE--ERFTLADIPGIIE 217 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCS-SCCEEEEEECSSS--CEEEEEECCCCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccce-ecceeeEEEecCc--ceEEEEecccccc
Confidence 479999999999999999999999999999999843 233333221 2233555555430 01111111000
Q ss_pred HHHhcCCCCCCHHHH--HHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 010509 145 TALLQLPNSFTEKEK--IKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTI 222 (508)
Q Consensus 145 ~~~l~~~~~~~~~~~--~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~ 222 (508)
.+.. ......... .++++.++..+++. +.. ...+|+||+||+.+|++|+.+|.++++ +++|...
T Consensus 218 ~a~~--~~~L~~~fl~~~era~~lL~vvDls---~~~-----~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~ 283 (416)
T 1udx_A 218 GASE--GKGLGLEFLRHIARTRVLLYVLDAA---DEP-----LKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLE 283 (416)
T ss_dssp CGGG--SCCSCHHHHHHHTSSSEEEEEEETT---SCH-----HHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSC
T ss_pred chhh--hhhhhHHHHHHHHHHHhhhEEeCCc---cCC-----HHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhh
Confidence 0000 001111110 11122333334443 222 347999999999999999999999999 9999987
Q ss_pred HHHHHHHHHHH-HcCCCEEEEEecCcchHHHhhccE
Q 010509 223 AQQILSILLKL-ANGGRTIVMTIHQPSNMLYYMFHK 257 (508)
Q Consensus 223 ~~~i~~~L~~l-~~~g~tii~s~H~~~~~~~~~~D~ 257 (508)
+ ..++.+++. .+.|.+++.+|..-..-+.++++.
T Consensus 284 ~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 284 E-EAVKALADALAREGLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp H-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred H-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHH
Confidence 7 455555544 445777666554333345555553
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-14 Score=145.02 Aligned_cols=128 Identities=16% Similarity=0.206 Sum_probs=88.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHH----hc-
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTAL----LQ- 149 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~----l~- 149 (508)
+++.+++|.|+||||||||.+.|++.+.+. | . .++.+.+|+||+.+++. +.++++.+... +.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~-----~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~~ 95 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G-----GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQG 95 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G-----GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C-----CCceEEEeccccccCCh-HHHHHHhccccccchhhh
Confidence 478899999999999999999999987542 2 0 13456677999988865 88899877521 11
Q ss_pred --CCCCCCHHHHHHHHHHHHHHcCCC--cc--cccccCCCCCCccCHHHHHHHHHH--HHHhhCCCEEEEeCCCCCCCHH
Q 010509 150 --LPNSFTEKEKIKCAEAVMTELGLS--EC--KNSLIGGPLTRGVSGGERKRVSIG--QEILINPSLLFLDEPTSGLDST 221 (508)
Q Consensus 150 --~~~~~~~~~~~~~v~~~l~~lgL~--~~--~~~~vg~~~~~~LSGGerqRv~Ia--~aL~~~P~illLDEPtsgLD~~ 221 (508)
.|.... .+...+.++.+.-. .. ....+. .+.+.+||||+||+.+| +++ +|+|+|+|||++++|+.
T Consensus 96 ~g~p~a~d----~~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 96 RGLPGTHD----MKLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPI 168 (290)
T ss_dssp SCSTTSBC----HHHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCC
T ss_pred ccCcchhH----HHHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEc--CCCEEEEeCccccCCcc
Confidence 132222 23455566665332 00 111111 23468999999999997 454 99999999999999985
Q ss_pred H
Q 010509 222 I 222 (508)
Q Consensus 222 ~ 222 (508)
.
T Consensus 169 ~ 169 (290)
T 1odf_A 169 L 169 (290)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.38 E-value=6.1e-16 Score=166.80 Aligned_cols=177 Identities=12% Similarity=0.057 Sum_probs=110.7
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEe-CChhccccEEEEecCCCCCCCCCHHHHH
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP-FSNQMTRNTGFVTQEDVLSPYLTVTETM 142 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~-~~~~~~~~i~yv~Q~~~l~~~lTv~E~l 142 (508)
..+++++++.+++|+.++|+|||||||||||++|+|+++|++|.|++.|.+ +.....+.++++.|........|..+.+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l 326 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLL 326 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHH
Confidence 457899999999999999999999999999999999999999999999865 2211233466666543322223444443
Q ss_pred HHHHHhcCC-----CCCCHHHHHH------------------HHHHHHHHcCC-----Cc----ccccccCCCCCCccCH
Q 010509 143 VFTALLQLP-----NSFTEKEKIK------------------CAEAVMTELGL-----SE----CKNSLIGGPLTRGVSG 190 (508)
Q Consensus 143 ~~~~~l~~~-----~~~~~~~~~~------------------~v~~~l~~lgL-----~~----~~~~~vg~~~~~~LSG 190 (508)
..+.+.+ | ......+... .++++++.+.. .. ..+..+ .....+||
T Consensus 327 ~~~LR~~-PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi--~~~~~~s~ 403 (511)
T 2oap_1 327 RAALRQR-PDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIAL--VQTMWVRG 403 (511)
T ss_dssp HTTGGGC-CSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEE--EEEEEESS
T ss_pred HHhhccC-CCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEE--EEEEEEeC
Confidence 3222111 1 0011011100 12233333322 11 111000 11235799
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEE--EecCcchHHHhhcc
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVM--TIHQPSNMLYYMFH 256 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~--s~H~~~~~~~~~~D 256 (508)
|||||..++. + | |+|||+.....+++.+.++.++|+|+++ ++|+++. +...++
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~e-i~~~~g 458 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEK-MADFLG 458 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHH-HHHHHT
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHH-HHHHcC
Confidence 9999877651 2 7 9999998888888888877767899985 8999864 555543
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.1e-12 Score=135.17 Aligned_cols=156 Identities=15% Similarity=0.229 Sum_probs=91.2
Q ss_pred eece-EEEEeCCeEEEEECCCCCcHHHHHHHH--hcCCCCccc-----EEEECCEeCChhccccEEEEecCCCCCCCCCH
Q 010509 67 LKGI-TGMVKPGEMLAMLGPSGCGKTTLLTAL--GGRLGRING-----RITYNGKPFSNQMTRNTGFVTQEDVLSPYLTV 138 (508)
Q Consensus 67 L~~v-s~~v~~Ge~~ailG~nGsGKSTLL~~L--~g~~~~~~G-----~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv 138 (508)
|+.+ .+-+++|++++|+||||||||||++.| .+..++..| .++++++... ..
T Consensus 167 LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~--------------------~~ 226 (400)
T 3lda_A 167 LDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTF--------------------RP 226 (400)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC--------------------CH
T ss_pred HHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCcc--------------------CH
Confidence 4443 367999999999999999999999954 566665444 5566554310 00
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH-HHHHHHHHHHHHh--hCCCEEEEeCCC
Q 010509 139 TETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG-GERKRVSIGQEIL--INPSLLFLDEPT 215 (508)
Q Consensus 139 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG-GerqRv~Ia~aL~--~~P~illLDEPt 215 (508)
.........+. ...+ .+++.+ .+. +..++ .+.+.+.-+.+++ .+|+++++|||+
T Consensus 227 ~rl~~~a~~~g----l~~~-------~vleni--------~~~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 227 VRLVSIAQRFG----LDPD-------DALNNV--------AYA----RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHTT----CCHH-------HHHHTE--------EEE----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHcC----CChH-------hHhhcE--------EEe----ccCChHHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 00000000110 1110 111111 111 11222 1233333333333 469999999999
Q ss_pred CCCCHHHH------------HHHHHHHHHHHcC-CCEEEEEecCcc------------------hHHHhhccEEEEEeCC
Q 010509 216 SGLDSTIA------------QQILSILLKLANG-GRTIVMTIHQPS------------------NMLYYMFHKVLLLSEG 264 (508)
Q Consensus 216 sgLD~~~~------------~~i~~~L~~l~~~-g~tii~s~H~~~------------------~~~~~~~D~v~lL~~G 264 (508)
+.+|+... .++++.|++++++ |.|||+++|... ..+.+.+|.++.|+++
T Consensus 284 ~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 284 ALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp GGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 99997543 6788889998765 999999999821 2356788999999876
Q ss_pred e
Q 010509 265 Y 265 (508)
Q Consensus 265 ~ 265 (508)
+
T Consensus 364 ~ 364 (400)
T 3lda_A 364 K 364 (400)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=8.9e-16 Score=161.57 Aligned_cols=132 Identities=15% Similarity=0.166 Sum_probs=94.6
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--------hccccEEEEe--------
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--------QMTRNTGFVT-------- 127 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--------~~~~~i~yv~-------- 127 (508)
+.+|+++ + .++|++++|+|||||||||||++|+|.+.+.+|+|.+.|.++.. ..++.+++.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~L 233 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAIL 233 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHG
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHh
Confidence 3467777 4 38999999999999999999999999998889999999887632 1233455654
Q ss_pred -cCCCC--CCC----CCHHHHHHHHHHhc-----CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 128 -QEDVL--SPY----LTVTETMVFTALLQ-----LPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 128 -Q~~~l--~~~----lTv~E~l~~~~~l~-----~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
|++.. ++. .|+.+++.++.... +... +. .+.++ .|..+|+.+.. .. ..|||||+||
T Consensus 234 rq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~-~~---~~~i~-rL~~lgl~~~~--~~-----~~LSgg~~QR 301 (418)
T 1p9r_A 234 RQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTN-TA---VGAVT-RLRDMGIEPFL--IS-----SSLLGVLAQR 301 (418)
T ss_dssp GGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCS-SS---HHHHH-HHHHHTCCHHH--HH-----HHEEEEEEEE
T ss_pred ccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchh-hH---HHHHH-HHHHcCCcHHH--HH-----HHHHHHHHHH
Confidence 88764 344 58888887754211 1111 11 12223 46778887653 22 4899999999
Q ss_pred HHHHHHHhhCCCEEEE
Q 010509 196 VSIGQEILINPSLLFL 211 (508)
Q Consensus 196 v~Ia~aL~~~P~illL 211 (508)
||++|+.+|++..-
T Consensus 302 --LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 --LVRTLCPDCKEPYE 315 (418)
T ss_dssp --EEEEECTTTCEEEE
T ss_pred --hhhhhcCCCCccCC
Confidence 99999999998763
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.33 E-value=5.3e-16 Score=161.76 Aligned_cols=168 Identities=16% Similarity=0.186 Sum_probs=121.8
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhc------------CCCCcccEEEECCEeCCh-----hcccc---EEEEecCCCC
Q 010509 73 MVKPGEMLAMLGPSGCGKTTLLTALGG------------RLGRINGRITYNGKPFSN-----QMTRN---TGFVTQEDVL 132 (508)
Q Consensus 73 ~v~~Ge~~ailG~nGsGKSTLL~~L~g------------~~~~~~G~I~~~G~~~~~-----~~~~~---i~yv~Q~~~l 132 (508)
.+++|+.++|+|+||||||||+|+|+| ...|.+|.|.++|.++.. ..++. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 557899999999999999999999999 346889999999854321 11222 3477888888
Q ss_pred CCCCCHHHHH--HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCC--CE
Q 010509 133 SPYLTVTETM--VFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINP--SL 208 (508)
Q Consensus 133 ~~~lTv~E~l--~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P--~i 208 (508)
++..+..|.+ .|.+.++. ++.++..++..+ +. ....+||+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~--d~-----~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD--DA-----EIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC--TT-----CSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc--cc-----eeeeecccc------------Ccchhh
Confidence 8887776655 44333321 111122222211 11 222466653 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HcCCCEEEEEecCcchHHHhhccEEE-EEeCC-eEEEEcChhh
Q 010509 209 LFLDEPTSGLDSTIAQQILSILLKL-ANGGRTIVMTIHQPSNMLYYMFHKVL-LLSEG-YPLYSGEASG 274 (508)
Q Consensus 209 llLDEPtsgLD~~~~~~i~~~L~~l-~~~g~tii~s~H~~~~~~~~~~D~v~-lL~~G-~iv~~G~~~~ 274 (508)
+++|||+.++|+......++.++++ ++.|.|++ +|+.. .+.++||++. +|.+| ++++.|+.++
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhccCCceeecCCCCH
Confidence 9999999999999999999999998 77788865 99976 5788999999 99999 9988887654
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.32 E-value=8e-15 Score=139.45 Aligned_cols=165 Identities=16% Similarity=0.137 Sum_probs=90.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCC
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNS 153 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~ 153 (508)
.++|++++|+||||||||||+++|+|++++. | ..+++|++++..++. +..+++........+..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g--------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~~~~ 82 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G--------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGAPET 82 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T--------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTSGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C--------------CceEEEecCCCcCCH-HHHHHhcccccCCCCch
Confidence 5799999999999999999999999988643 2 124555555443321 11111110000011111
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHH-HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 010509 154 FTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIG-QEILINPSLLFLDEPTSGLDSTIAQQILSILLK 232 (508)
Q Consensus 154 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia-~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~ 232 (508)
..... ..+.++.+...+..+....+ ....+|+||+||++++ ++++.++.++++|||.. .+
T Consensus 83 ~~~~~----~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~--------------~~ 143 (208)
T 3c8u_A 83 FDFEG----FQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW--------------RD 143 (208)
T ss_dssp BCHHH----HHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG--------------GG
T ss_pred hhHHH----HHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh--------------HH
Confidence 12211 22233332111111222221 1235799999999998 77888888888888731 11
Q ss_pred HHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHHHHHH
Q 010509 233 LANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNYFA 280 (508)
Q Consensus 233 l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~~f~ 280 (508)
+.+.--.++++.++....+.+...|. +..|+ +.+++.+.+.
T Consensus 144 l~~~~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~~~ 184 (208)
T 3c8u_A 144 LTAIWDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVARAQ 184 (208)
T ss_dssp GGGTCSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHHHH
T ss_pred HHHhcCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHHHH
Confidence 12222367777777665566666662 34454 5566665554
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=6.8e-15 Score=150.31 Aligned_cols=165 Identities=16% Similarity=0.154 Sum_probs=110.0
Q ss_pred cceeeeceEEEEeCC-------eEEEEECCCCCcHHHHHHHHhcCC----CCcccEEEECCEeCCh---h-ccccEEEEe
Q 010509 63 EKAILKGITGMVKPG-------EMLAMLGPSGCGKTTLLTALGGRL----GRINGRITYNGKPFSN---Q-MTRNTGFVT 127 (508)
Q Consensus 63 ~~~iL~~vs~~v~~G-------e~~ailG~nGsGKSTLL~~L~g~~----~~~~G~I~~~G~~~~~---~-~~~~i~yv~ 127 (508)
.+.+++++++.+++| +.++|.||||+|||||+++|+|.+ .+++|.+..++.++.. . .++.+.|+.
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iD 109 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFID 109 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEc
Confidence 456889999999887 899999999999999999999987 5677877776665432 1 245799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCC
Q 010509 128 QEDVLSPYLTVTETMVFTALLQLPN-SFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINP 206 (508)
Q Consensus 128 Q~~~l~~~lTv~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P 206 (508)
|.+.+.+ ++.|++.......... -.......+.++..++.++|.. +++.++ .||+|+|||+.++
T Consensus 110 E~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~-----~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 110 EIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSG-----LLSSPLRSRFGII------- 174 (334)
T ss_dssp TGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGG-----GSCHHHHTTCSEE-------
T ss_pred chhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCcc-----cCCHHHHHhcCce-------
Confidence 9887766 7888885443221100 0011122234555666666655 555554 8999999998655
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccE
Q 010509 207 SLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHK 257 (508)
Q Consensus 207 ~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~ 257 (508)
.+||+.+..++.++|++.++. +. .|+++ .+..++++
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~~~~~-----~~~~~-~~~~ia~~ 211 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAASLMDV-----EIEDA-AAEMIAKR 211 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHHHTTC-----CBCHH-HHHHHHHT
T ss_pred ---------eeCCCCCHHHHHHHHHHHHHHcCC-----CcCHH-HHHHHHHh
Confidence 788999999999999998753 42 46653 45555553
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-13 Score=138.19 Aligned_cols=106 Identities=15% Similarity=0.160 Sum_probs=72.0
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEE---CCEeCChh---c-cccEEEEecCCC--------------
Q 010509 73 MVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITY---NGKPFSNQ---M-TRNTGFVTQEDV-------------- 131 (508)
Q Consensus 73 ~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~---~G~~~~~~---~-~~~i~yv~Q~~~-------------- 131 (508)
++.+|++++|+||||||||||||+|+|+..|++|+|.+ +|++++.. . .+.+|||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~ 244 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEEL 244 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHH
Confidence 44579999999999999999999999999999999999 89887531 1 236899999974
Q ss_pred --CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCccCH
Q 010509 132 --LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 132 --l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSG 190 (508)
++|.+|+ ||+.|.. +.. ..+...+++++++.+||. +..+.+. +.||+
T Consensus 245 ~~l~~~~~~-~n~~~~~-~~~-----~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~lse 294 (301)
T 1u0l_A 245 KHYFKEFGD-KQCFFSD-CNH-----VDEPECGVKEAVENGEIAESRYENYV-----KMFYE 294 (301)
T ss_dssp GGGSTTSSS-CCCSSTT-CCS-----SSCSSCHHHHHHHHTSSCHHHHHHHH-----HHHHH
T ss_pred HHHHHhccc-ccCcCCC-CcC-----CCCCCcHHHHHHHcCCCCHHHHHHHH-----HHHHH
Confidence 5888999 9887752 211 122345688999999995 6666554 36664
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.5e-13 Score=136.16 Aligned_cols=118 Identities=19% Similarity=0.219 Sum_probs=68.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEE---CCEeCCh--hc-cccEEEEecCCCCCC----CCCHHHH
Q 010509 72 GMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITY---NGKPFSN--QM-TRNTGFVTQEDVLSP----YLTVTET 141 (508)
Q Consensus 72 ~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~---~G~~~~~--~~-~~~i~yv~Q~~~l~~----~lTv~E~ 141 (508)
+++.+|++++|+||||+|||||+|+|+|...+.+|+|.+ +|+..+. .. +...+|++|.+.+.+ .+|+ |+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 445689999999999999999999999999999999999 8877643 22 222799999987765 6899 88
Q ss_pred HH--HHH------HhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 142 MV--FTA------LLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 142 l~--~~~------~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
+. |.. .++........+...+++++++.++|.+.+.... ..++.|++||
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~~ 303 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKDR 303 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhhc
Confidence 83 321 1121111111223356889999999987543333 2677787763
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-13 Score=139.50 Aligned_cols=96 Identities=16% Similarity=0.256 Sum_probs=78.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEE-------------------eCCeEEEEECCCCCcHHHHHHHHh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMV-------------------KPGEMLAMLGPSGCGKTTLLTALG 98 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v-------------------~~Ge~~ailG~nGsGKSTLL~~L~ 98 (508)
.|+++||++.| .++++++++.+ ++|+++||+||||||||||+++|+
T Consensus 37 ~i~~~~v~~~y---------------~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~ 101 (308)
T 1sq5_A 37 DLSLEEVAEIY---------------LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp TCCHHHHHHTH---------------HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred ccchHhHHHHH---------------HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 36677776654 24788888877 899999999999999999999999
Q ss_pred cCCC--CcccEEEE---CCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhc
Q 010509 99 GRLG--RINGRITY---NGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQ 149 (508)
Q Consensus 99 g~~~--~~~G~I~~---~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~ 149 (508)
|+++ |++|+|.+ +|.......++.++++ |+..+++.+|+.+++.+...++
T Consensus 102 ~~l~~~~~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 102 ALLSRWPEHRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHHhhCCCCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 9887 89999999 8877654444567888 8777888899999998876553
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-15 Score=150.79 Aligned_cols=128 Identities=20% Similarity=0.276 Sum_probs=91.2
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh----hccccEEEEecCC-CCCCCCC
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----QMTRNTGFVTQED-VLSPYLT 137 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~-~l~~~lT 137 (508)
...+++++++.+++| ++|.||||||||||+++|+|..++ |.|.++|.++.. +..+.+++++|+. ...|.++
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~ 107 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVI 107 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeE
Confidence 456899999999999 999999999999999999998766 789999987642 2344577788764 4556666
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 010509 138 VTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTS 216 (508)
Q Consensus 138 v~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPts 216 (508)
+.|++......+ ... ..+ .+.+..++.+ ..|||||+||+.|++++.++|++| |||+.
T Consensus 108 ~~Deid~~~~~r-----~~~----~~~------~~~~~~~~~l-----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 108 FFDEVDALCPRR-----SDR----ETG------ASVRVVNQLL-----TEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEETCTTTCC------------------------CTTHHHHHH-----HHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred eeehhhhhhccc-----CCC----cch------HHHHHHHHHH-----HhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 666665422110 000 000 1223334443 379999999999999999999985 99864
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=6.9e-16 Score=146.12 Aligned_cols=150 Identities=19% Similarity=0.261 Sum_probs=81.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCC-------------CcccEEEECCEeCC---h-hccccEEEEecCCCCCCCCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLG-------------RINGRITYNGKPFS---N-QMTRNTGFVTQEDVLSPYLT 137 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~-------------~~~G~I~~~G~~~~---~-~~~~~i~yv~Q~~~l~~~lT 137 (508)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.+.. . .+++.+ .|+..++ ..+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~-~~~ 75 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIE-HAE 75 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEE-EEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEe-eee
Confidence 5899999999999999999999999764 45565 3554331 1 122221 2322221 122
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHH----HHHHHH-HHhhCCCEEEEe
Q 010509 138 VTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK----RVSIGQ-EILINPSLLFLD 212 (508)
Q Consensus 138 v~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq----Rv~Ia~-aL~~~P~illLD 212 (508)
+.+|+ + +.+.++ ++++++. +-....+. ++ .|-++ ++ .++ +++.+|++++||
T Consensus 76 ~~~n~-~--------g~~~~~----i~~~~~~-~~~~~~~~--------~~-~g~~~~~~~~~-~~~~~~l~~p~~~ild 131 (198)
T 1lvg_A 76 FSGNL-Y--------GTSKEA----VRAVQAM-NRICVLDV--------DL-QGVRSIKKTDL-CPIYIFVQPPSLDVLE 131 (198)
T ss_dssp ETTEE-E--------EEEHHH----HHHHHHT-TCEEEEEC--------CH-HHHHHHTTSSC-CCEEEEEECSCHHHHH
T ss_pred ecCcc-C--------CCCHHH----HHHHHHc-CCcEEEEC--------CH-HHHHHHHhcCC-CcEEEEEeCCCHHHHH
Confidence 22222 1 112222 3333332 10000110 00 01111 11 344 677788888889
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 213 EPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 213 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
|+|+++|..+...+.+.|.+..++ +...|.+ ..+|+++++++
T Consensus 132 e~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 132 QRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECSS
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECCC
Confidence 999999999999999998887543 1234521 45899887764
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-12 Score=125.64 Aligned_cols=60 Identities=17% Similarity=0.177 Sum_probs=45.5
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-cCCCEEEEEecCcchH-------HHhhccEEEEEeC
Q 010509 204 INPSLLFLDEPTSGL--DSTIAQQILSILLKLA-NGGRTIVMTIHQPSNM-------LYYMFHKVLLLSE 263 (508)
Q Consensus 204 ~~P~illLDEPtsgL--D~~~~~~i~~~L~~l~-~~g~tii~s~H~~~~~-------~~~~~D~v~lL~~ 263 (508)
.+|+++++|||++.+ |+....+.+..|.+++ +.|.|||+++|..... +.+.+|.++.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 6655566666666665 5699999999987531 4577899999974
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.4e-11 Score=122.70 Aligned_cols=114 Identities=14% Similarity=0.170 Sum_probs=81.9
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHh
Q 010509 69 GITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALL 148 (508)
Q Consensus 69 ~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l 148 (508)
.+++..++|++++|+|||||||||+++.|++.+.+..|+|.+.+.+..+. ...|
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~------------------~a~e-------- 149 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA------------------AAIE-------- 149 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH------------------HHHH--------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH------------------HHHH--------
Confidence 34556789999999999999999999999999877778888877654210 0011
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 010509 149 QLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV---SIGQEILINPSLLFLDEPTSGLDSTIAQQ 225 (508)
Q Consensus 149 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv---~Ia~aL~~~P~illLDEPtsgLD~~~~~~ 225 (508)
..+.+.+.+|+... ...|||+.+++ ++++++..+|+++++|||.. ......
T Consensus 150 -------------qL~~~~~~~gl~~~----------~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~ 203 (306)
T 1vma_A 150 -------------QLKIWGERVGATVI----------SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKN 203 (306)
T ss_dssp -------------HHHHHHHHHTCEEE----------CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHH
T ss_pred -------------HHHHHHHHcCCcEE----------ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHH
Confidence 12234445565421 25689999999 89999999999999999974 334455
Q ss_pred HHHHHHHHH
Q 010509 226 ILSILLKLA 234 (508)
Q Consensus 226 i~~~L~~l~ 234 (508)
+++.|+++.
T Consensus 204 l~~eL~~l~ 212 (306)
T 1vma_A 204 LMEELRKVH 212 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555543
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.9e-11 Score=130.00 Aligned_cols=179 Identities=12% Similarity=0.083 Sum_probs=113.0
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCccc-EEEECCEeCCh-hcc-ccEEEEecCCCCCCCCCHHH
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRING-RITYNGKPFSN-QMT-RNTGFVTQEDVLSPYLTVTE 140 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G-~I~~~G~~~~~-~~~-~~i~yv~Q~~~l~~~lTv~E 140 (508)
-..|+++++-+++|+++.|.|+||+|||||+..+++...+..| .|.+.+.+.+. ... +..+...+ ... +
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~-~ 261 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGN-------INA-Q 261 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH-H
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH-H
Confidence 4578888888999999999999999999999999986543333 34443322221 110 00000000 000 0
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCC
Q 010509 141 TMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEIL--INPSLLFLDEPTSGL 218 (508)
Q Consensus 141 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~--~~P~illLDEPtsgL 218 (508)
. ++. ...+.++ .+++.+.++.++..+..-.. ..++|.+|.+ +.++.++ .+|+++++|+++...
T Consensus 262 ~------l~~-g~l~~~~-~~~~~~a~~~l~~~~l~i~d-----~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~ 326 (454)
T 2r6a_A 262 N------LRT-GKLTPED-WGKLTMAMGSLSNAGIYIDD-----TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQ 326 (454)
T ss_dssp H------HHT-SCCCHHH-HHHHHHHHHHHHSSCEEEEC-----CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSC
T ss_pred H------Hhc-CCCCHHH-HHHHHHHHHHHhcCCEEEEC-----CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhc
Confidence 0 111 1233333 34556666666544332111 1378999987 5667776 689999999999877
Q ss_pred C--------HHHHHHHHHHHHHHHcC-CCEEEEEec---------C--cc-------hHHHhhccEEEEEeCCe
Q 010509 219 D--------STIAQQILSILLKLANG-GRTIVMTIH---------Q--PS-------NMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 219 D--------~~~~~~i~~~L~~l~~~-g~tii~s~H---------~--~~-------~~~~~~~D~v~lL~~G~ 265 (508)
+ .....++.+.|+.++++ |.+||+++| + |. ..+.+.+|.|++|+.++
T Consensus 327 ~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 327 GSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDD 400 (454)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETT
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccc
Confidence 4 23446788888888865 999999999 2 42 14678899999998665
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=3.3e-10 Score=113.79 Aligned_cols=127 Identities=14% Similarity=0.119 Sum_probs=89.2
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHH
Q 010509 68 KGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTAL 147 (508)
Q Consensus 68 ~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~ 147 (508)
++++++ +|++++++|+||+||||+++.|++.+.+..|+|.+.+.+...... + +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~-----------------~-~ql----- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAA-----------------R-EQL----- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHH-----------------H-HHH-----
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhH-----------------H-HHH-----
Confidence 678887 999999999999999999999999987778899888776532100 0 000
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHHHH
Q 010509 148 LQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEP-TSGLDSTIAQQI 226 (508)
Q Consensus 148 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEP-tsgLD~~~~~~i 226 (508)
..+.+..|+..... + .+-+..+.+|.+|+.+...+++++++||| ++++|.....++
T Consensus 146 ----------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l 202 (295)
T 1ls1_A 146 ----------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGEL 202 (295)
T ss_dssp ----------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHH
T ss_pred ----------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHH
Confidence 01123345543211 0 01234456788999888899999999999 999999888888
Q ss_pred HHHHHHHHcCCCEEEEE
Q 010509 227 LSILLKLANGGRTIVMT 243 (508)
Q Consensus 227 ~~~L~~l~~~g~tii~s 243 (508)
.+..+.+.. ..+++++
T Consensus 203 ~~~~~~~~~-~~~~lv~ 218 (295)
T 1ls1_A 203 ARLKEVLGP-DEVLLVL 218 (295)
T ss_dssp HHHHHHHCC-SEEEEEE
T ss_pred HHHhhhcCC-CEEEEEE
Confidence 888776642 3344433
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=9.3e-12 Score=133.64 Aligned_cols=174 Identities=14% Similarity=0.131 Sum_probs=108.7
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhc--CCCCcccEEEECCEeCCh-hccccEEEEecCCCCCCCC--CHHHHHH
Q 010509 69 GITGMVKPGEMLAMLGPSGCGKTTLLTALGG--RLGRINGRITYNGKPFSN-QMTRNTGFVTQEDVLSPYL--TVTETMV 143 (508)
Q Consensus 69 ~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g--~~~~~~G~I~~~G~~~~~-~~~~~i~yv~Q~~~l~~~l--Tv~E~l~ 143 (508)
.+++++.++..++|.|++||||||+|+.|.. +.....|++.+.+.|.+. ++. ....+|++ +|.++..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~--------~~~~lPhl~~~Vvtd~~ 230 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELS--------VYEGIPHLLTEVVTDMK 230 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGG--------GGTTCTTBSSSCBCSHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhh--------hhccCCcccceeecCHH
Confidence 4778889999999999999999999999876 345566788777776542 111 00111111 1211221
Q ss_pred HHH-HhcCCCCCCHHHHHHHHHHHHHHcCCCccccc--ccCCCCCCccCHHHHHHH----------HHHHHHhhCCC-EE
Q 010509 144 FTA-LLQLPNSFTEKEKIKCAEAVMTELGLSECKNS--LIGGPLTRGVSGGERKRV----------SIGQEILINPS-LL 209 (508)
Q Consensus 144 ~~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~--~vg~~~~~~LSGGerqRv----------~Ia~aL~~~P~-il 209 (508)
.+. .++ ...++.++|. ++++..|+.+..+- .+. ..+||||+||. .+++++...|. ++
T Consensus 231 ~a~~~L~----~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivl 301 (512)
T 2ius_A 231 DAANALR----WCVNEMERRY-KLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVV 301 (512)
T ss_dssp HHHHHHH----HHHHHHHHHH-HHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCEEEE
T ss_pred HHHHHHH----HHHHHHHHHH-HHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCcEEE
Confidence 111 111 1123444554 67888898765431 121 25789988753 34556677887 89
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHcC----CCEEEEEecCcch------HHHhhccEEEE
Q 010509 210 FLDEPTSGLDSTIAQQILSILLKLANG----GRTIVMTIHQPSN------MLYYMFHKVLL 260 (508)
Q Consensus 210 lLDEPtsgLD~~~~~~i~~~L~~l~~~----g~tii~s~H~~~~------~~~~~~D~v~l 260 (508)
++||++.-+|.. ...+.+.+.++++. |.++|++||+|+. ...++.+||.+
T Consensus 302 vIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 302 LVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp EEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred EEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 999999988843 34566666666432 7899999999972 22355567665
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=6.1e-11 Score=126.44 Aligned_cols=52 Identities=13% Similarity=0.022 Sum_probs=49.0
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..+|+|+|+++++ |+++|+|||||||||||++|+|+++|++|+|.++|+++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 4579999999999 999999999999999999999999999999999998764
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=99.01 E-value=2.9e-10 Score=116.86 Aligned_cols=148 Identities=22% Similarity=0.346 Sum_probs=89.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC
Q 010509 72 GMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP 151 (508)
Q Consensus 72 ~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~ 151 (508)
+-+++|+++.|.||||+|||||+..++.......| .+.|+.-+....+ + .+
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~---------------~vlyi~~E~~~~~-----~---~a------ 106 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG---------------IAAFIDAEHALDP-----E---YA------ 106 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC---------------CEEEEESSCCCCH-----H---HH------
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCC---------------eEEEEECCCCcCH-----H---HH------
Confidence 47899999999999999999998888764321112 2445554422111 0 01
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCC----------C
Q 010509 152 NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILIN--PSLLFLDEPTSGL----------D 219 (508)
Q Consensus 152 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~--P~illLDEPtsgL----------D 219 (508)
+.+|+.. .+-.+- ...+. .+-+.++++++.+ |+++++|||++.+ |
T Consensus 107 ----------------~~lG~~~-~~l~i~----~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd 163 (349)
T 2zr9_A 107 ----------------KKLGVDT-DSLLVS----QPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGD 163 (349)
T ss_dssp ----------------HHTTCCG-GGCEEE----CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC---
T ss_pred ----------------HHcCCCH-HHeEEe----cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhcccccc
Confidence 1122211 010111 01232 3345678888765 9999999999998 3
Q ss_pred H---HHHHHHHHHHHHH----HcCCCEEEEEecCcch---------------HHHhhccEEEEEeCCeEEEEcC
Q 010509 220 S---TIAQQILSILLKL----ANGGRTIVMTIHQPSN---------------MLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 220 ~---~~~~~i~~~L~~l----~~~g~tii~s~H~~~~---------------~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
+ ..+..+.+.+++| .+.|.|||+++|.... .+...+|.++.+..++++..|+
T Consensus 164 ~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 164 SHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 3 2223445555555 3459999999996431 2567899999998877665554
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.3e-10 Score=113.86 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=96.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSF 154 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~ 154 (508)
++|++++++||||+||||+++.|++.+.+.+| +.+.++.+|.. ..+..|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G--------------~~V~lv~~D~~---r~~a~eqL~~~~-------- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH--------------KKIAFITTDTY---RIAAVEQLKTYA-------- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC--------------CCEEEEECCCS---STTHHHHHHHHH--------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--------------CEEEEEecCcc---cchHHHHHHHHH--------
Confidence 47999999999999999999999998866556 24666666642 235556554322
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 010509 155 TEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLA 234 (508)
Q Consensus 155 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~ 234 (508)
+..|+.... ..+. +.-+.+++ .+.+|+++|+| |+|+|+.....+.++.+-+.
T Consensus 158 -------------~~~gl~~~~----------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 158 -------------ELLQAPLEV----------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp -------------TTTTCCCCB----------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSC
T ss_pred -------------HhcCCCeEe----------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHh
Confidence 112332110 1122 23345555 45999999999 99999876655544443332
Q ss_pred ---cCCCEEEE-EecCcchHHHhhccEEEEEeCCeEEEEcC-----hhhHHHHHHhcCCC
Q 010509 235 ---NGGRTIVM-TIHQPSNMLYYMFHKVLLLSEGYPLYSGE-----ASGAMNYFASIGYC 285 (508)
Q Consensus 235 ---~~g~tii~-s~H~~~~~~~~~~D~v~lL~~G~iv~~G~-----~~~~~~~f~~~g~~ 285 (508)
..+.++++ ++|+.. .+.+.+|++..+..+.++...- ...+.+.....|.+
T Consensus 210 ~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~giVltk~D~~~~~g~~~~~~~~~~~p 268 (296)
T 2px0_A 210 FESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQYIFTKIDETTSLGSVFNILAESKIG 268 (296)
T ss_dssp CCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCEEEEECTTTCSCCHHHHHHHHTCSCC
T ss_pred hcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCEEEEeCCCcccchhHHHHHHHHHCcC
Confidence 12334555 488864 5667777766666677765421 12445555555544
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-13 Score=137.18 Aligned_cols=124 Identities=15% Similarity=0.210 Sum_probs=85.2
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh----hccccEEEEecCCC-CCCCCC
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----QMTRNTGFVTQEDV-LSPYLT 137 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~-l~~~lT 137 (508)
...+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++.. ...+.+++++|+.. ..|.++
T Consensus 61 ~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 136 (278)
T 1iy2_A 61 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 136 (278)
T ss_dssp CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEE
Confidence 356789999999999 89999999999999999999875 7899999876522 22344667777643 566777
Q ss_pred HHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCE
Q 010509 138 VTETMVFTALLQLPN-SFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSL 208 (508)
Q Consensus 138 v~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~i 208 (508)
+.|++......+... ....++..+.+.+++ ..|||||+||+.+++++..+|++
T Consensus 137 ~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 137 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred ehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 878775432211100 001112223333332 26899999999999999999976
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.97 E-value=6.1e-12 Score=138.43 Aligned_cols=160 Identities=16% Similarity=0.155 Sum_probs=101.9
Q ss_pred ccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcc-cEEEECCEeCChhccccEEEEecCCC---------
Q 010509 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN-GRITYNGKPFSNQMTRNTGFVTQEDV--------- 131 (508)
Q Consensus 62 ~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~-G~I~~~G~~~~~~~~~~i~yv~Q~~~--------- 131 (508)
+...+++++++.+++|+.++|+||||+|||||+++|++..++.. |.+.+++.+... ....++++++...
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~-~~p~i~~~p~g~~~~~~e~~~~ 123 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE-NMPRIKTVPACQGRRIVEKYRE 123 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT-TSCEEEEEETTHHHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc-cCCcEEEEecchHHHHHHHHHH
Confidence 34678999999999999999999999999999999999987766 888888876543 3446888887421
Q ss_pred -------------CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHH
Q 010509 132 -------------LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSI 198 (508)
Q Consensus 132 -------------l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 198 (508)
.+..+++.+|+........+...-. + .....-+.+|..+..... ..++|+|++|++..
T Consensus 124 ~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~-~---~~~~~~~L~G~~~~~~~~-----~g~~~~g~~~~i~~ 194 (604)
T 3k1j_A 124 KAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID-A---TGAHAGALLGDVRHDPFQ-----SGGLGTPAHERVEP 194 (604)
T ss_dssp HHHHHTCC-----------CCCEEEECCTTCSSCCEEE-C---TTCCHHHHHCEECCCCC---------CCCCGGGGEEC
T ss_pred hhccchhhhhhcccccccccccceeeccccCCCCCEEE-c---CCCCHHhcCceEEechhh-----cCCccccccccccC
Confidence 1111111111110000000000000 0 000011122222111111 13799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 010509 199 GQEILINPSLLFLDEPTSGLDSTIAQQILSILLK 232 (508)
Q Consensus 199 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~ 232 (508)
+.....++.+||+||... |++..+..+.+.|.+
T Consensus 195 g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999999988 899999888888875
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.7e-13 Score=133.87 Aligned_cols=129 Identities=16% Similarity=0.225 Sum_probs=87.1
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh----hccccEEEEecCC-CCCCCCC
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----QMTRNTGFVTQED-VLSPYLT 137 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~-~l~~~lT 137 (508)
...+++++++.+++| ++|.||||+|||||+++|++... .|.+.++|.++.. ...+.+++++|+. ...|.++
T Consensus 37 ~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 112 (254)
T 1ixz_A 37 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 112 (254)
T ss_dssp CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEE
Confidence 346789999999999 89999999999999999999875 7889998876522 2234466777764 3556677
Q ss_pred HHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 010509 138 VTETMVFTALLQLPN-SFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPT 215 (508)
Q Consensus 138 v~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPt 215 (508)
+.|++......+... ....++..+.+.+++. .|||||+||+.+++++..+|++ +|++.
T Consensus 113 ~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~l~g~~~~~~~i~~a~t~~p~~--ld~~l 171 (254)
T 1ixz_A 113 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPAL 171 (254)
T ss_dssp EEETHHHHHC---------CHHHHHHHHHHHH------------------HHHTCCTTCCEEEEEEESCGGG--SCGGG
T ss_pred EehhhhhhhcccCccccccchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEccCCchh--CCHHH
Confidence 777774332211100 0011222233333322 6899999999999999999987 56553
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.1e-11 Score=113.22 Aligned_cols=69 Identities=16% Similarity=0.246 Sum_probs=50.9
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh----hccccEEEEecCCCCCCCCCHHHHHH
Q 010509 71 TGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----QMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 71 s~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
|+++++|++++|+||||||||||+++|+|+.+ .+.+++..... ..++.++|++|++..++.+++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56788999999999999999999999999864 57777765532 23456899999877776666655543
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.93 E-value=8e-11 Score=109.77 Aligned_cols=138 Identities=19% Similarity=0.193 Sum_probs=76.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC-----------cccEEEECCEeCCh------hccccEEEEecCCCC-CCCCCHHH
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRLGR-----------INGRITYNGKPFSN------QMTRNTGFVTQEDVL-SPYLTVTE 140 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~~~-----------~~G~I~~~G~~~~~------~~~~~i~yv~Q~~~l-~~~lTv~E 140 (508)
.++|+|+||||||||++.++|...+ .+|+|.++|+++.- ...+..++++|.... ...++|.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 5899999999999999999997643 57999999976421 111112222221000 00011111
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHH---HcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 010509 141 TMVFTALLQLPNSFTEKEKIKCAEAVMT---ELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSG 217 (508)
Q Consensus 141 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~---~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsg 217 (508)
.. ... ..+.+..+++ ...-.+..-..+++. .+|..-..+++.+|++++.+|+++++| ||+
T Consensus 111 ~~------------~~~-s~~~~~~~~~~~~~~~~~~~~i~~v~nK--~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sa 173 (191)
T 1oix_A 111 IA------------KHL-TYENVERWLKELRDHADSNIVIMLVGNK--SDLRHLRAVPTDEARAFAEKNGLSFIE--TSA 173 (191)
T ss_dssp TT------------CHH-HHHTHHHHHHHHHHHSCTTCEEEEEEEC--GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCT
T ss_pred Cc------------CHH-HHHHHHHHHHHHHHhcCCCCcEEEEEEC--cccccccccCHHHHHHHHHHcCCEEEE--EeC
Confidence 00 000 0001111111 111011000111111 123332344578899999999999999 999
Q ss_pred CCHHHHHHHHHHHHHH
Q 010509 218 LDSTIAQQILSILLKL 233 (508)
Q Consensus 218 LD~~~~~~i~~~L~~l 233 (508)
+|..+..++++.|.+.
T Consensus 174 ld~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 174 LDSTNVEAAFQTILTE 189 (191)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999988763
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.87 E-value=7.8e-11 Score=113.98 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=42.5
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh------------hccccEEEEecC
Q 010509 71 TGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN------------QMTRNTGFVTQE 129 (508)
Q Consensus 71 s~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~------------~~~~~i~yv~Q~ 129 (508)
++++++ ++++|+|||||||||||++|+|.+.|++|+|.++|.++.. ..++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 456667 8999999999999999999999999999999999987621 135679999984
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.81 E-value=8.3e-11 Score=113.22 Aligned_cols=40 Identities=28% Similarity=0.350 Sum_probs=23.4
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh-cCCCC
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG-GRLGR 103 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~-g~~~~ 103 (508)
.+..+++|+++++|++++|+||||||||||+++|+ |+.++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 46789999999999999999999999999999999 98754
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.76 E-value=5.1e-09 Score=107.72 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=36.9
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEE-EECCEe
Q 010509 66 ILKGIT--GMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRI-TYNGKP 114 (508)
Q Consensus 66 iL~~vs--~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I-~~~G~~ 114 (508)
-|+.+- +=+++|+++.|.||||||||||+..+++...+..|.+ ++++..
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 355543 3689999999999999999999999998765445554 454443
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.65 E-value=2.1e-08 Score=103.53 Aligned_cols=149 Identities=17% Similarity=0.204 Sum_probs=88.6
Q ss_pred CCeE-EEEECCCCCcHHHHHHHHhcCCC-----------CcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHH---
Q 010509 76 PGEM-LAMLGPSGCGKTTLLTALGGRLG-----------RINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTE--- 140 (508)
Q Consensus 76 ~Ge~-~ailG~nGsGKSTLL~~L~g~~~-----------~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E--- 140 (508)
+|-. ++|+|+||||||||+|.|+|... +.+|.|.++|.++. +....|++.|.+. ..+..
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~--l~DT~G~i~~lp~----~lve~f~~ 250 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM--LVDTVGFIRGIPP----QIVDAFFV 250 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE--EEECCCBCSSCCG----GGHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE--EEeCCCchhcCCH----HHHHHHHH
Confidence 4444 99999999999999999999763 56799999986541 2223455444221 11211
Q ss_pred HHHHHHH----hcC--CCCCC--HHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHH----HHH-hhCCC
Q 010509 141 TMVFTAL----LQL--PNSFT--EKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIG----QEI-LINPS 207 (508)
Q Consensus 141 ~l~~~~~----l~~--~~~~~--~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia----~aL-~~~P~ 207 (508)
++..... +.. ..... ..+..+.+.++++.+++.+..--.++|. ...+|+|+++|+.++ +++ ..+|+
T Consensus 251 tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~~ 329 (364)
T 2qtf_A 251 TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIFD 329 (364)
T ss_dssp HHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCCc
Confidence 1111100 000 01111 1233445677888888765431112211 225788888988887 444 33445
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHc
Q 010509 208 LLFLDEPTSGLDSTIAQQILSILLKLAN 235 (508)
Q Consensus 208 illLDEPtsgLD~~~~~~i~~~L~~l~~ 235 (508)
+ +|+|++|.....++.+.|.++..
T Consensus 330 ~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 330 V----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp E----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred E----EEEECCCCcCHHHHHHHHHHHhc
Confidence 4 89999999999999999988653
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.4e-11 Score=127.95 Aligned_cols=158 Identities=15% Similarity=0.137 Sum_probs=89.9
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCC-CCCCCCHHHHH
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDV-LSPYLTVTETM 142 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~-l~~~lTv~E~l 142 (508)
..+++++|+.+++|++++|.||||||||||+++|+|. .+|++...+.+ ....+..+++++|... +++.++....+
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~-~~~~~~~lg~~~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLP-LDRLNFELGVAIDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSC-TTTHHHHHGGGTTCSCEEETTCCCSTTT
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEecc-chhHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999985 46777652111 1111223556666543 23333322111
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHH---cCCCc-cc---ccc--cC--CCCCCccCHHHHHHHHHHHHHhhCCCEEE-
Q 010509 143 VFTALLQLPNSFTEKEKIKCAEAVMTE---LGLSE-CK---NSL--IG--GPLTRGVSGGERKRVSIGQEILINPSLLF- 210 (508)
Q Consensus 143 ~~~~~l~~~~~~~~~~~~~~v~~~l~~---lgL~~-~~---~~~--vg--~~~~~~LSGGerqRv~Ia~aL~~~P~ill- 210 (508)
.-++... ........+.+.++. ..+.. .. +.. .| +.....+++|+++|+..+.+++.+|++++
T Consensus 232 ----~r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliy 306 (377)
T 1svm_A 232 ----SRDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHC 306 (377)
T ss_dssp ----TTTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHH
T ss_pred ----Hhhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEE
Confidence 0001000 110011222333331 00110 00 000 00 11234689999999998888888999887
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHcCCCEEE
Q 010509 211 LDEPTSGLDSTIAQQILSILLKLANGGRTIV 241 (508)
Q Consensus 211 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii 241 (508)
||+|+. ..++++.++|+++.
T Consensus 307 Ld~~~~-----------~l~~RL~~Rg~t~~ 326 (377)
T 1svm_A 307 LERSEF-----------LLEKRIIQSGIALL 326 (377)
T ss_dssp HHTCTH-----------HHHTTCTTCHHHHH
T ss_pred EeCCHH-----------HHHHHHHHcCccHH
Confidence 999987 34556666665443
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.61 E-value=3.6e-08 Score=105.19 Aligned_cols=59 Identities=22% Similarity=0.392 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----cCCCEEEEEecCcc
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEP----------TSGLDSTIAQQILSILLKLA----NGGRTIVMTIHQPS 248 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEP----------tsgLD~~~~~~i~~~L~~l~----~~g~tii~s~H~~~ 248 (508)
|++++|..++++....|.|||+||+ +.|.|......+.++|..+- +.+..||.+||+|.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 6778888899999999999999999 44677776666777776663 34789999999985
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.9e-08 Score=93.86 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=32.7
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLA 234 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~ 234 (508)
...|++++.+|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887753
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.7e-09 Score=101.70 Aligned_cols=70 Identities=20% Similarity=0.265 Sum_probs=45.7
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChh---ccccEEEEecCCCCCCCCCHHHHH
Q 010509 69 GITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ---MTRNTGFVTQEDVLSPYLTVTETM 142 (508)
Q Consensus 69 ~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~---~~~~i~yv~Q~~~l~~~lTv~E~l 142 (508)
+-....++|++++|+||||||||||+++|++++ |.+.++|.++... .+...++++|+....+.+++.+++
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 93 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEW 93 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHH
Confidence 334566799999999999999999999999976 8899998776421 122457777764443333444433
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-07 Score=107.41 Aligned_cols=72 Identities=19% Similarity=0.227 Sum_probs=58.0
Q ss_pred CCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHcCCCEEEEE-ecCcchHHHhhccE
Q 010509 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTS-GLDSTIAQQILSILLKLANGGRTIVMT-IHQPSNMLYYMFHK 257 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~~P~illLDEPts-gLD~~~~~~i~~~L~~l~~~g~tii~s-~H~~~~~~~~~~D~ 257 (508)
+.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.+...+.++|++| ||++. .+.+++++
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~ 261 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFND 261 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTS
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcC
Confidence 34679999999999999999999999999996 999888777777776655456788885 99875 45666764
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.51 E-value=5.5e-08 Score=89.46 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=44.2
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECC---------EeCCh-hccccEEEEecCC
Q 010509 68 KGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNG---------KPFSN-QMTRNTGFVTQED 130 (508)
Q Consensus 68 ~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G---------~~~~~-~~~~~i~yv~Q~~ 130 (508)
+++++.+.+| +++|+||||||||||+++|.+.+.+..|...-.+ ..... .....+..++|++
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 6889999999 9999999999999999999998766555332221 11000 1234688888875
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.6e-09 Score=101.96 Aligned_cols=53 Identities=25% Similarity=0.315 Sum_probs=44.7
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEE--EECCEeCCh
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRI--TYNGKPFSN 117 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I--~~~G~~~~~ 117 (508)
....+++++..++|++++|+||||||||||+++|++++. ..|.+ .++|.++..
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVRH 66 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHTT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhhh
Confidence 445677777789999999999999999999999999886 67887 888876543
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.47 E-value=4.4e-08 Score=91.57 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=29.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCCCCccc
Q 010509 73 MVKPGEMLAMLGPSGCGKTTLLTALGGRLGRING 106 (508)
Q Consensus 73 ~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G 106 (508)
++++|++++|+||||||||||+++|+++..|..|
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 5789999999999999999999999999866555
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.46 E-value=7e-08 Score=98.54 Aligned_cols=129 Identities=17% Similarity=0.170 Sum_probs=84.9
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHH
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVF 144 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~ 144 (508)
.-|+.+.+-+++|+++.|.|++|+|||||+.-++...... | ..+.|+.=+ ++..+
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~-------g--------~~Vl~fSlE------ms~~q---- 88 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALND-------D--------RGVAVFSLE------MSAEQ---- 88 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-------T--------CEEEEEESS------SCHHH----
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-------C--------CeEEEEeCC------CCHHH----
Confidence 4567777779999999999999999999998888643211 1 124443321 23322
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 010509 145 TALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQ 224 (508)
Q Consensus 145 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~ 224 (508)
...|+......+++.+..+ | .||.+|.+|+..|...+.++++.+.|+|... ..
T Consensus 89 --------------l~~Rlls~~~~v~~~~l~~---g-----~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~ 141 (338)
T 4a1f_A 89 --------------LALRALSDLTSINMHDLES---G-----RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IE 141 (338)
T ss_dssp --------------HHHHHHHHHHCCCHHHHHH---T-----CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HH
T ss_pred --------------HHHHHHHHhhCCCHHHHhc---C-----CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HH
Confidence 2222222222222222222 2 6999999999999999999999999998654 33
Q ss_pred HHHHHHHHHHc-C-CCEEEEEec
Q 010509 225 QILSILLKLAN-G-GRTIVMTIH 245 (508)
Q Consensus 225 ~i~~~L~~l~~-~-g~tii~s~H 245 (508)
++...++++.+ . |..+|++-|
T Consensus 142 ~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 142 QIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEec
Confidence 67777777764 3 677777643
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.4e-08 Score=99.40 Aligned_cols=63 Identities=22% Similarity=0.178 Sum_probs=49.2
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh---cCCCCcccEEE--------ECCEeCCh-----hccccEEEEec
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG---GRLGRINGRIT--------YNGKPFSN-----QMTRNTGFVTQ 128 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~---g~~~~~~G~I~--------~~G~~~~~-----~~~~~i~yv~Q 128 (508)
.++++.+ ++|++++|+|||||||||++++|+ |...+++|.+. .+|.++.. ..++.+++++|
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 94 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFV 94 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEe
Confidence 3455544 789999999999999999999999 88888999999 88887732 35667889987
Q ss_pred CC
Q 010509 129 ED 130 (508)
Q Consensus 129 ~~ 130 (508)
++
T Consensus 95 ~~ 96 (252)
T 4e22_A 95 SQ 96 (252)
T ss_dssp EE
T ss_pred cC
Confidence 54
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.40 E-value=7.2e-10 Score=118.96 Aligned_cols=129 Identities=16% Similarity=0.213 Sum_probs=85.6
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChh----ccccEEEEecCCC-CCCCCCH
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ----MTRNTGFVTQEDV-LSPYLTV 138 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~----~~~~i~yv~Q~~~-l~~~lTv 138 (508)
..+++++++.+++| ++|.||||+|||||+++|++... .|.+.++|.++... ..+.+..++|... ..|.+.+
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~ 128 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 128 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEE
Confidence 45788999999999 89999999999999999999764 67899998765321 1233555666542 3445555
Q ss_pred HHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 010509 139 TETMVFTALLQLP-NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTS 216 (508)
Q Consensus 139 ~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPts 216 (508)
.|++......+.. .....++..+.+.+++. .+||||+|+..|+++..++|++ |||+..
T Consensus 129 IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 129 IDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 5555322111100 00112333344444443 4788999998899999999987 899875
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.37 E-value=5.7e-08 Score=98.59 Aligned_cols=77 Identities=14% Similarity=0.158 Sum_probs=59.2
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--------hc-----cccEEEE-ecCCCC
Q 010509 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--------QM-----TRNTGFV-TQEDVL 132 (508)
Q Consensus 67 L~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--------~~-----~~~i~yv-~Q~~~l 132 (508)
++++++.+++|++++|+|+||+||||++..|++.+.+..|+|.+.+.+... .+ +..+.++ +|....
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 478999999999999999999999999999999887788999998887632 12 4568888 666544
Q ss_pred CCCCCHHHHHH
Q 010509 133 SPYLTVTETMV 143 (508)
Q Consensus 133 ~~~lTv~E~l~ 143 (508)
.|..++.+++.
T Consensus 175 ~p~~~~~~~l~ 185 (320)
T 1zu4_A 175 DPASVVFDAIK 185 (320)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 44434444443
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.3e-08 Score=97.94 Aligned_cols=53 Identities=34% Similarity=0.468 Sum_probs=36.6
Q ss_pred eEEEEeE-EEEEeccccccCcccccccceeeeceEEEEeC---CeEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 38 TLKFEDI-VYKIKMKKGFYGSNKKIEEKAILKGITGMVKP---GEMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 38 ~l~~~~l-~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~---Ge~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
.++++|+ +++++ +.+++|+|+|+++++ |+.++|+|++||||||+.++|++.++
T Consensus 17 ~l~~~~~~~~~~~------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 17 LLETGSLLHSPFD------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp ---------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred ceEEcceeeEEec------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 6999999 88862 135799999999999 99999999999999999999998653
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.8e-07 Score=94.58 Aligned_cols=61 Identities=10% Similarity=0.067 Sum_probs=48.9
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEe--cCcc
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLD-EPTSGLDSTIAQQILSILLKLANGGRTIVMTI--HQPS 248 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLD-EPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~--H~~~ 248 (508)
..+|+||+|++. +.+...++-++++| +|++|+|......+++.+++... +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 368999998876 55555677889999 99999999998888888877654 67888888 8864
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=1e-07 Score=89.56 Aligned_cols=127 Identities=13% Similarity=0.196 Sum_probs=72.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHH
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKE 158 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~ 158 (508)
+++|+|+|||||||+.++|+++ |...+++-++..... + +. .
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~~~~~~-------~----------------------~~--~--- 44 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVVAREVV-------A----------------------KD--S--- 44 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHHHHHTT-------C----------------------SS--C---
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHHHHHHHc-------c----------------------CC--h---
Confidence 6899999999999999999983 433443221110000 0 00 0
Q ss_pred HHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCC
Q 010509 159 KIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGR 238 (508)
Q Consensus 159 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~ 238 (508)
....++.+.+|... -.+.|+.+|..++.....+|+.+.++ .+.++|.....+.+.+++. .+.
T Consensus 45 --~~~~~i~~~~g~~~------------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~ 106 (206)
T 1jjv_A 45 --PLLSKIVEHFGAQI------------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAP 106 (206)
T ss_dssp --HHHHHHHHHHCTTC------------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSS
T ss_pred --HHHHHHHHHhCHHH------------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCC
Confidence 12334555555432 13678888888888888877644332 3345666555555544432 356
Q ss_pred EEEEEecCcchH-HHhhccEEEEEe
Q 010509 239 TIVMTIHQPSNM-LYYMFHKVLLLS 262 (508)
Q Consensus 239 tii~s~H~~~~~-~~~~~D~v~lL~ 262 (508)
++|+.+|...+. ....||.+++++
T Consensus 107 ~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 107 YTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp EEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred EEEEEechhhhcCcHhhCCEEEEEE
Confidence 888888976542 246788887774
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=1.6e-07 Score=86.65 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=31.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCCC-cccEEEECC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLGR-INGRITYNG 112 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-~~G~I~~~G 112 (508)
.+|++++|+||||||||||++.|++..++ ..|.|....
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~tt 41 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTT 41 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccC
Confidence 37899999999999999999999998753 566665543
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.28 E-value=1.8e-06 Score=88.16 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=36.1
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc---CCCEEEEEecCcc
Q 010509 204 INPSLLFLDEPTSGLDSTIAQQILSILLKLAN---GGRTIVMTIHQPS 248 (508)
Q Consensus 204 ~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~---~g~tii~s~H~~~ 248 (508)
.+|.++++||+... |......+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888877665 5789999999974
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=3.9e-07 Score=96.37 Aligned_cols=96 Identities=9% Similarity=0.127 Sum_probs=62.1
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEE-EeCCeEEEEcChhh--HHH--
Q 010509 204 INPSLLFLDEPTSGLDS-TIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLL-LSEGYPLYSGEASG--AMN-- 277 (508)
Q Consensus 204 ~~P~illLDEPtsgLD~-~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~l-L~~G~iv~~G~~~~--~~~-- 277 (508)
.+|++|++||+..-.+. .++..+...+..+.+.|+.||+++|.+...+..+.+++.- +..|.++..++++. ..+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 48999999999887664 6788899999998888999999999865432222233222 35677777766642 222
Q ss_pred --HHHhcCCCCCCCCChHHHHHHhhc
Q 010509 278 --YFASIGYCPSVPTNPSDFLLDLAS 301 (508)
Q Consensus 278 --~f~~~g~~~p~~~npad~~~~~~~ 301 (508)
..+..|...+ ....+++.+...
T Consensus 273 ~~~~~~~~~~i~--~e~l~~la~~~~ 296 (440)
T 2z4s_A 273 RKMLEIEHGELP--EEVLNFVAENVD 296 (440)
T ss_dssp HHHHHHHTCCCC--TTHHHHHHHHCC
T ss_pred HHHHHHcCCCCC--HHHHHHHHHhcC
Confidence 2333455433 344666665544
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=5.2e-06 Score=85.08 Aligned_cols=157 Identities=16% Similarity=0.146 Sum_probs=83.3
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC--CCCcccEEEECCEeCCh----hccccEEEEecCCC-CCCC-
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGR--LGRINGRITYNGKPFSN----QMTRNTGFVTQEDV-LSPY- 135 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~--~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~-l~~~- 135 (508)
..+|++++++++ .++|+|++|||||||++.|+|. ++..+|.++-....+.. .-.+..+...+.+. .+..
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDF 100 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCH
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCH
Confidence 458899999988 8999999999999999999994 45566665433322210 01122333333221 1110
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC----C----------------cccccccCCCC---CCccCHHH
Q 010509 136 LTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGL----S----------------ECKNSLIGGPL---TRGVSGGE 192 (508)
Q Consensus 136 lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL----~----------------~~~~~~vg~~~---~~~LSGGe 192 (508)
-.+.+.+. ++.....|- . ...|+ .|-.. ..+-++.+
T Consensus 101 ~~v~~~i~--------------------~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDt-PG~~~~~~~~q~~~~~ 159 (360)
T 3t34_A 101 AAVRKEIQ--------------------DETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDL-PGLTKVAVDGQSDSIV 159 (360)
T ss_dssp HHHHHHHH--------------------HHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEEC-CCBCSSCCTTCCSSHH
T ss_pred HHHHHHHH--------------------HHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEEC-CCCCcCCcCCCchhHH
Confidence 00111111 111111110 0 01122 11100 11356788
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCC-CEEEEEec
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGG-RTIVMTIH 245 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tii~s~H 245 (508)
+++..+++..+.+|+++++.-..+..|... ...++.++.+...| .+|++.+.
T Consensus 160 ~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 160 KDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp HHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred HHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 999999999999999887774334445443 45567777776555 56666665
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=3.9e-07 Score=101.24 Aligned_cols=129 Identities=18% Similarity=0.101 Sum_probs=76.6
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC--cccEEEECCEeCCh----hccccEEEEecCCCCCCCCCHHHHHHH
Q 010509 71 TGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR--INGRITYNGKPFSN----QMTRNTGFVTQEDVLSPYLTVTETMVF 144 (508)
Q Consensus 71 s~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~--~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~ 144 (508)
|+.+++|+.++|+|++|+|||||++.|++...+ ..|+| .+|..+.. +.++.+++..|...+... ++..
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~---- 76 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRV---- 76 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEE----
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEE----
Confidence 356788999999999999999999999986543 56877 56655432 223445555554332211 1000
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 010509 145 TALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQ 224 (508)
Q Consensus 145 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~ 224 (508)
...||. |. ..++ .......-..++.++++| |+.|+|+.+.
T Consensus 77 -----------------------------nliDTp-G~---~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~- 116 (665)
T 2dy1_A 77 -----------------------------FLLDAP-GY---GDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTE- 116 (665)
T ss_dssp -----------------------------EEEECC-CS---GGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHH-
T ss_pred -----------------------------EEEeCC-Cc---cchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHH-
Confidence 111211 10 0111 112222335678899999 9999998776
Q ss_pred HHHHHHHHHHcCCCEEEEEecCcc
Q 010509 225 QILSILLKLANGGRTIVMTIHQPS 248 (508)
Q Consensus 225 ~i~~~L~~l~~~g~tii~s~H~~~ 248 (508)
+.++.+.+.+..+|++.|..+
T Consensus 117 ---~~~~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 117 ---RAWTVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp ---HHHHHHHHTTCCEEEEEECGG
T ss_pred ---HHHHHHHHccCCEEEEecCCc
Confidence 333333445888899999865
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.15 E-value=8.5e-07 Score=83.01 Aligned_cols=39 Identities=23% Similarity=0.149 Sum_probs=25.0
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
...+++|||+++++|++++|+|++||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 456899999999999999999999999999999999865
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=7.1e-07 Score=85.70 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=35.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 72 GMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 72 ~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
...++|++++|.|+||||||||+++|+|+ .|+|.+.+++.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 34579999999999999999999999998 68899988764
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.12 E-value=8.3e-07 Score=83.89 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=30.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCCC-cccEEEE
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLGR-INGRITY 110 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-~~G~I~~ 110 (508)
++|++++|+||||||||||++.|++.+++ ..+.+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~ 42 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISM 42 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEec
Confidence 58999999999999999999999999865 4444433
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=98.11 E-value=1e-05 Score=82.50 Aligned_cols=143 Identities=16% Similarity=0.152 Sum_probs=80.3
Q ss_pred eeceE-EEEeCCeEEEEECCCCCcHHHHHHHHhcC--CCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHH
Q 010509 67 LKGIT-GMVKPGEMLAMLGPSGCGKTTLLTALGGR--LGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 67 L~~vs-~~v~~Ge~~ailG~nGsGKSTLL~~L~g~--~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
|+.+- +-+++|+++.|.||+|+|||||+..++.. .++..| |. ...+.|+.-+..+ ...+-..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~g-----g~------~~~vlyi~~E~~~----~~~~l~~ 175 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG-----YP------GGKIIFIDTENTF----RPDRLRD 175 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTT-----BC------CCEEEEEESSSCC----CHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccC-----CC------CCeEEEEECCCCC----CHHHHHH
Confidence 44433 57899999999999999999999999874 222111 10 1235566554321 2222222
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH-HHHHHHHHHHh----hCCCEEEEeCCCCCC
Q 010509 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE-RKRVSIGQEIL----INPSLLFLDEPTSGL 218 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe-rqRv~Ia~aL~----~~P~illLDEPtsgL 218 (508)
....+ ..+. +++++.+-+. +..++.+ .+.+..++.++ .+++++++|+.++-.
T Consensus 176 ~~~~~----g~~~-------~~~l~~l~~~------------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~ 232 (343)
T 1v5w_A 176 IADRF----NVDH-------DAVLDNVLYA------------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALF 232 (343)
T ss_dssp HHHHT----TCCH-------HHHHHTEEEE------------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGH
T ss_pred HHHHc----CCCH-------HHHHhceeEe------------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHH
Confidence 22211 1111 1223322111 1223332 34555566666 568999999999865
Q ss_pred CHH------------HHHHHHHHHHHHHcC-CCEEEEEecCc
Q 010509 219 DST------------IAQQILSILLKLANG-GRTIVMTIHQP 247 (508)
Q Consensus 219 D~~------------~~~~i~~~L~~l~~~-g~tii~s~H~~ 247 (508)
+.. ...+++..|++++++ |.+||++.|-.
T Consensus 233 ~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 233 RVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp HHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 432 134566666777654 88999988854
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=98.07 E-value=3.7e-06 Score=84.85 Aligned_cols=132 Identities=15% Similarity=0.126 Sum_probs=84.5
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHH
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
-.-|+++.+-+++|+++.|.|++|+|||||+..++..... .| ..+.|+.=+ ++..+..
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g--------------~~vl~~slE------~s~~~l~- 112 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND--------------DVVNLHSLE------MGKKENI- 112 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT--------------CEEEEEESS------SCHHHHH-
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC--------------CeEEEEECC------CCHHHHH-
Confidence 3457777777999999999999999999998888753211 11 124455432 3333322
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 010509 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIA 223 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~ 223 (508)
+++......+++.+..+ | . ..||++|++|+..|...+.++++.+.|+|... .
T Consensus 113 -----------------~R~~~~~~~i~~~~l~~---~--~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~ 164 (315)
T 3bh0_A 113 -----------------KRLIVTAGSINAQKIKA---A--R-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS-----V 164 (315)
T ss_dssp -----------------HHHHHHHTTCCHHHHHS---C--H-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----H
T ss_pred -----------------HHHHHHHcCCCHHHHhc---C--C-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----H
Confidence 12221111122222211 1 0 13899999999999999999999999998643 4
Q ss_pred HHHHHHHHHHHcC-CCE--EEEEec
Q 010509 224 QQILSILLKLANG-GRT--IVMTIH 245 (508)
Q Consensus 224 ~~i~~~L~~l~~~-g~t--ii~s~H 245 (508)
.++.+.++++.++ |.. +|++-|
T Consensus 165 ~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 165 NYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 4567777777654 666 777755
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.06 E-value=2.1e-05 Score=77.75 Aligned_cols=72 Identities=19% Similarity=0.292 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHc----CCCEEEEEecCcc---hHH
Q 010509 189 SGGERKRVSIGQEILINPSLLFLDEPTSGLDS----------TIAQQILSILLKLAN----GGRTIVMTIHQPS---NML 251 (508)
Q Consensus 189 SGGerqRv~Ia~aL~~~P~illLDEPtsgLD~----------~~~~~i~~~L~~l~~----~g~tii~s~H~~~---~~~ 251 (508)
+++++.|..++.+...+|.+|++||+.+-++. .....++..+..... .+..||.+|++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 45677777788888889999999999776553 223344444544322 2456788888753 334
Q ss_pred HhhccEEEE
Q 010509 252 YYMFHKVLL 260 (508)
Q Consensus 252 ~~~~D~v~l 260 (508)
.+-|++.+.
T Consensus 177 ~~R~~~~i~ 185 (297)
T 3b9p_A 177 LRRFTKRVY 185 (297)
T ss_dssp HHHCCEEEE
T ss_pred HhhCCeEEE
Confidence 445565433
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=98.00 E-value=5.4e-06 Score=83.09 Aligned_cols=150 Identities=16% Similarity=0.195 Sum_probs=80.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEE-CCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRLGRINGRITY-NGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFT 155 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~-~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~ 155 (508)
+..++|+|+||+|||||+|.|.|... .+ .+.+- ....+..+++.+++..+ ++.+ .| +..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~------~i~s~~~~-tTr~~~~gi~~~~~~~i---~~iD---------Tp-G~~ 67 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKI------SITSRKAQ-TTRHRIVGIHTEGAYQA---IYVD---------TP-GLH 67 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSE------EECCCCSS-CCSSCEEEEEEETTEEE---EEES---------SS-SCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc------cccCCCCC-cceeeEEEEEEECCeeE---EEEE---------Cc-CCC
Confidence 34899999999999999999999741 11 11111 11234567777654211 0000 01 111
Q ss_pred HHHHHHHHHHHHHH---cCCCcccccc--cCCCCCCccCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHH
Q 010509 156 EKEKIKCAEAVMTE---LGLSECKNSL--IGGPLTRGVSGGERKRVSIGQEIL--INPSLLFLDEPTSGLDSTI-AQQIL 227 (508)
Q Consensus 156 ~~~~~~~v~~~l~~---lgL~~~~~~~--vg~~~~~~LSGGerqRv~Ia~aL~--~~P~illLDEPtsgLD~~~-~~~i~ 227 (508)
.+. .....+.+.. -.+.. .|-. +-+. ..+|+|++ .+++.+. ..|.++++ +.+|... ...+.
T Consensus 68 ~~~-~~~l~~~~~~~~~~~l~~-~D~vl~Vvd~--~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~ 136 (301)
T 1ega_A 68 MEE-KRAINRLMNKAASSSIGD-VELVIFVVEG--TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLL 136 (301)
T ss_dssp HHH-HHHHHHHHTCCTTSCCCC-EEEEEEEEET--TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHH
T ss_pred ccc-hhhHHHHHHHHHHHHHhc-CCEEEEEEeC--CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHH
Confidence 000 0011111110 01111 1111 1111 13888886 4566666 67889998 7899876 67788
Q ss_pred HHHHHHHcC-CC--EEEEEecCcchHHHhhccEE
Q 010509 228 SILLKLANG-GR--TIVMTIHQPSNMLYYMFHKV 258 (508)
Q Consensus 228 ~~L~~l~~~-g~--tii~s~H~~~~~~~~~~D~v 258 (508)
+.++++++. |. .+.++.|+-. .+..++|.+
T Consensus 137 ~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i 169 (301)
T 1ega_A 137 PHLQFLASQMNFLDIVPISAETGL-NVDTIAAIV 169 (301)
T ss_dssp HHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHH
T ss_pred HHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHH
Confidence 888888764 43 6666777654 355666654
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.00 E-value=1e-06 Score=82.69 Aligned_cols=42 Identities=24% Similarity=0.106 Sum_probs=36.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
.++|++++|+|+||||||||++.|++.+.+..|.|.+.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 578999999999999999999999998877788888766543
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=2.3e-05 Score=79.18 Aligned_cols=142 Identities=21% Similarity=0.277 Sum_probs=80.2
Q ss_pred eeceE-EEEeCCeEEEEECCCCCcHHHHHHHHhcCC-CCc-ccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHH
Q 010509 67 LKGIT-GMVKPGEMLAMLGPSGCGKTTLLTALGGRL-GRI-NGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 67 L~~vs-~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~-~~~-~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
|+.+- +-+++|+++.|.||+|+|||||+..++... .+. .| |. ...+.|+.-+..+ ...+-..
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g~------~~~vlyi~~e~~~----~~~~l~~ 160 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----GL------SGKAVYIDTEGTF----RWERIEN 160 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----CC------SCEEEEEESSSCC----CHHHHHH
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----CC------CCeEEEEECCCCC----CHHHHHH
Confidence 44432 578999999999999999999999888642 221 11 10 1235566544322 1222111
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH-HHHHHHHHHHh---hCCCEEEEeCCCCCCC
Q 010509 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE-RKRVSIGQEIL---INPSLLFLDEPTSGLD 219 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe-rqRv~Ia~aL~---~~P~illLDEPtsgLD 219 (508)
....+ +.+.+ ++++.+ .+. +..++.+ .+.+..++.++ .+|+++++|+.++-.+
T Consensus 161 ~~~~~----g~~~~-------~~~~~l--------~~~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 161 MAKAL----GLDID-------NVMNNI--------YYI----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHT----TCCHH-------HHHHTE--------EEE----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred HHHHh----CCCHH-------HHhccE--------EEE----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 21111 11111 122211 111 1223332 35677777777 5799999999987543
Q ss_pred H--------HH----HHHHHHHHHHHHcC-CCEEEEEecC
Q 010509 220 S--------TI----AQQILSILLKLANG-GRTIVMTIHQ 246 (508)
Q Consensus 220 ~--------~~----~~~i~~~L~~l~~~-g~tii~s~H~ 246 (508)
. .. ..+++..|++++++ |.+||++.|-
T Consensus 218 ~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 218 AEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred hhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 2 11 24556666666654 8999998774
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=2.2e-06 Score=78.10 Aligned_cols=37 Identities=19% Similarity=0.395 Sum_probs=32.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
.+|++++|+|+|||||||+++.|++++ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 469999999999999999999999874 7788887655
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.93 E-value=1.9e-05 Score=83.11 Aligned_cols=125 Identities=10% Similarity=0.123 Sum_probs=72.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFT 155 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~ 155 (508)
++.+++++||+||||||++..|++.+.+..++|.+-+.+..+ ....|.+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r------------------~~a~eqL~~----------- 146 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR------------------PAAYDQLLQ----------- 146 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC------------------HHHHHHHHH-----------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc------------------hhHHHHHHH-----------
Confidence 689999999999999999999999876656666664443210 011222221
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCC-CC--CCHHHHHHHHHHHHH
Q 010509 156 EKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPT-SG--LDSTIAQQILSILLK 232 (508)
Q Consensus 156 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPt-sg--LD~~~~~~i~~~L~~ 232 (508)
.-+..|+.-... . .+...-+-.+-+++.+...+++++++|+|- .+ .|+....++.++++.
T Consensus 147 ----------~~~~~gv~~~~~---~----~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~ 209 (433)
T 3kl4_A 147 ----------LGNQIGVQVYGE---P----NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDV 209 (433)
T ss_dssp ----------HHHTTTCCEECC---T----TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHH
T ss_pred ----------HHHhcCCceeec---c----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHh
Confidence 122233321110 0 011111122234555555689999999997 35 788777777776666
Q ss_pred HHcCCCEEEEEecC
Q 010509 233 LANGGRTIVMTIHQ 246 (508)
Q Consensus 233 l~~~g~tii~s~H~ 246 (508)
+......+++..|.
T Consensus 210 ~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 210 LKPDDVILVIDASI 223 (433)
T ss_dssp HCCSEEEEEEEGGG
T ss_pred hCCcceEEEEeCcc
Confidence 54444555555554
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.93 E-value=3.1e-06 Score=79.83 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=26.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
..+|++++|+||||||||||++.|++..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999999998754
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.91 E-value=2.6e-06 Score=86.51 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=25.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
+++..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999998653
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=6.4e-06 Score=77.20 Aligned_cols=44 Identities=27% Similarity=0.391 Sum_probs=35.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCC
Q 010509 72 GMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSP 134 (508)
Q Consensus 72 ~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~ 134 (508)
-.+++|++++|+|+||||||||.+.|++.++ .+.+++|++.+++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-------------------~~~~i~~D~~~~~ 59 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-------------------NCSVISQDDFFKP 59 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-------------------TEEEEEGGGGBCC
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-------------------CcEEEeCCccccC
Confidence 4567899999999999999999999999763 2567777766554
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.87 E-value=7.1e-07 Score=90.49 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=34.3
Q ss_pred cceeeeceEEEEeCCe------EEEEECCCCCcHHHHHHHHhcCCC
Q 010509 63 EKAILKGITGMVKPGE------MLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge------~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
.+..|++++..+..++ ++||.||||||||||+++|++++.
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4566777777777776 999999999999999999999875
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.84 E-value=2.9e-06 Score=92.07 Aligned_cols=43 Identities=35% Similarity=0.493 Sum_probs=37.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCCCCccc-EEE-ECCEeC
Q 010509 73 MVKPGEMLAMLGPSGCGKTTLLTALGGRLGRING-RIT-YNGKPF 115 (508)
Q Consensus 73 ~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G-~I~-~~G~~~ 115 (508)
.+++|++++|+|+||||||||+++|+|++.+.+| ++. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5789999999999999999999999999988876 785 888654
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=1.1e-06 Score=83.31 Aligned_cols=54 Identities=22% Similarity=0.267 Sum_probs=43.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCC---CCcccEEEE--------CCEeCCh-----hccccEEEEecCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRL---GRINGRITY--------NGKPFSN-----QMTRNTGFVTQED 130 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~---~~~~G~I~~--------~G~~~~~-----~~~~~i~yv~Q~~ 130 (508)
+.+++|+|||||||||+.+.|++.+ .+++|++.. +|.++.. ..++.+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 5689999999999999999999876 567888877 6776542 3456788888864
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.79 E-value=3e-05 Score=77.40 Aligned_cols=29 Identities=34% Similarity=0.663 Sum_probs=26.3
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 73 MVKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 73 ~v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++++..+.|.||+|+|||||.++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 45788999999999999999999999865
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=2.1e-06 Score=78.72 Aligned_cols=40 Identities=35% Similarity=0.386 Sum_probs=32.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCCCccc--EEEECCEeC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLGRING--RITYNGKPF 115 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G--~I~~~G~~~ 115 (508)
++|++++|.|++||||||+.+.|++.+.+ .| .|.++|..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999997643 45 566665544
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0001 Score=77.75 Aligned_cols=170 Identities=15% Similarity=0.172 Sum_probs=96.4
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHH
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVF 144 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~ 144 (508)
.-|+.+.+-+++|+++.|.|++|+|||||+.-++.......| ..+.|+.=+ ++..+...-
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g--------------~~vl~~slE------~~~~~l~~R 247 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG--------------VGVGIYSLE------MPAAQLTLR 247 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC--------------CCEEEEESS------SCHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--------------CeEEEEECC------CCHHHHHHH
Confidence 456777777999999999999999999999888864321111 113333222 222221110
Q ss_pred --HHHhcCC------CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHh--hCCCEEEEeCC
Q 010509 145 --TALLQLP------NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEIL--INPSLLFLDEP 214 (508)
Q Consensus 145 --~~~l~~~------~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~--~~P~illLDEP 214 (508)
+.....+ ...+.++ .+++.+.++.+.-.+. .+-+ ..++|..+- .+.++.+. .+|+++++|..
T Consensus 248 ~~~~~~~i~~~~l~~g~l~~~~-~~~~~~a~~~l~~~~l---~i~d--~~~~s~~~l--~~~~~~l~~~~~~~lIvID~l 319 (444)
T 2q6t_A 248 MMCSEARIDMNRVRLGQLTDRD-FSRLVDVASRLSEAPI---YIDD--TPDLTLMEV--RARARRLVSQNQVGLIIIDYL 319 (444)
T ss_dssp HHHHHTTCCTTTCCGGGCCHHH-HHHHHHHHHHHHTSCE---EEEC--CTTCBHHHH--HHHHHHHHHHSCCCEEEEECG
T ss_pred HHHHHcCCCHHHHhCCCCCHHH-HHHHHHHHHHHhcCCE---EEEC--CCCCCHHHH--HHHHHHHHHHcCCCEEEEcCh
Confidence 0111110 0123333 2334444444322211 1111 125676664 34555565 47999999998
Q ss_pred CCCCCH----------HHHHHHHHHHHHHHcC-CCEEEEEecC-----------cc-------hHHHhhccEEEEEe
Q 010509 215 TSGLDS----------TIAQQILSILLKLANG-GRTIVMTIHQ-----------PS-------NMLYYMFHKVLLLS 262 (508)
Q Consensus 215 tsgLD~----------~~~~~i~~~L~~l~~~-g~tii~s~H~-----------~~-------~~~~~~~D~v~lL~ 262 (508)
+.-.+. ....++.+.|+.++++ +.+||+++|- |. ..+.+.+|.|+.|.
T Consensus 320 ~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 320 QLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp GGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred hhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 754322 1234677888888765 8999999882 11 03567899999986
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.72 E-value=1.2e-05 Score=73.20 Aligned_cols=22 Identities=36% Similarity=0.708 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999985
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00011 Score=70.95 Aligned_cols=33 Identities=36% Similarity=0.713 Sum_probs=23.9
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 67 L~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++++++..++| +.|.||+|+|||||+++|++..
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 44555555555 8899999999999999999865
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.70 E-value=1.2e-05 Score=72.64 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=25.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCCCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRLGR 103 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~~~ 103 (508)
.|++++|+||||||||||+++|++++++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4778999999999999999999998653
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.70 E-value=1.7e-06 Score=88.33 Aligned_cols=53 Identities=25% Similarity=0.254 Sum_probs=44.9
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
.+.+++++++.+++|.+++|+|++|+|||||++.|++.+.+..|+|.+-+.+.
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 35688899999999999999999999999999999998766677776655544
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.65 E-value=5.9e-07 Score=91.23 Aligned_cols=44 Identities=27% Similarity=0.508 Sum_probs=37.3
Q ss_pred cceeeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHhcCCCCccc
Q 010509 63 EKAILKGITGMVKPGEM--LAMLGPSGCGKTTLLTALGGRLGRING 106 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~--~ailG~nGsGKSTLL~~L~g~~~~~~G 106 (508)
...+++.++..++.|++ +.+.||+|+||||+++++++.+.+..+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 45678888889999998 999999999999999999997644444
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00022 Score=68.25 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=23.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCccc
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRLGRING 106 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~~~~~G 106 (508)
-++|+|++|+|||||++.|.|.....++
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 4799999999999999999997654444
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=2.7e-05 Score=69.80 Aligned_cols=30 Identities=30% Similarity=0.440 Sum_probs=24.9
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhc
Q 010509 69 GITGMVKPGEMLAMLGPSGCGKTTLLTALGG 99 (508)
Q Consensus 69 ~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g 99 (508)
+.++++.+| +.+|+|||||||||++++|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 445566665 999999999999999999974
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.61 E-value=1.4e-05 Score=76.64 Aligned_cols=152 Identities=16% Similarity=0.139 Sum_probs=74.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSF 154 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~ 154 (508)
.+|+.+++.||+||||||++..+........| ..+.++.+.+.+......++.+++.........
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~------------~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~--- 138 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFILDDFIQND------------RAAECNIVVTQPRRISAVSVAERVAFERGEEPG--- 138 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT------------CGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTT---
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC------------CCCceEEEEeccchHHHHHHHHHHHHHhccccC---
Confidence 57999999999999999998876532111111 012344555554433233344443321100000
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccC--CCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHH
Q 010509 155 TEKEKIKCAEAVMTELGLSECKNSLIG--GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTS-GLDSTIAQQILSILL 231 (508)
Q Consensus 155 ~~~~~~~~v~~~l~~lgL~~~~~~~vg--~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPts-gLD~~~~~~i~~~L~ 231 (508)
...|.....+.... +..+-=.+.|.-.+.. ...+.+-+++++||.-. ++|.......++.+.
T Consensus 139 -------------~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~ 203 (235)
T 3llm_A 139 -------------KSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVV 203 (235)
T ss_dssp -------------SSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred -------------ceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHH
Confidence 00000000000000 0000012456655543 33578899999999965 788776655555554
Q ss_pred HHHcCCCEEEEEecCcchHHHhhcc
Q 010509 232 KLANGGRTIVMTIHQPSNMLYYMFH 256 (508)
Q Consensus 232 ~l~~~g~tii~s~H~~~~~~~~~~D 256 (508)
+...+-+++++|.--+.+...++++
T Consensus 204 ~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 204 QAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp HHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred hhCCCCeEEEEecCCCHHHHHHHcC
Confidence 4433334666653333334445554
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=5.1e-05 Score=79.89 Aligned_cols=146 Identities=12% Similarity=0.149 Sum_probs=73.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC------------CcccEEEECCEeCC----hhccccEEEEecCCCCCCCCCHHHHH
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRLG------------RINGRITYNGKPFS----NQMTRNTGFVTQEDVLSPYLTVTETM 142 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~~------------~~~G~I~~~G~~~~----~~~~~~i~yv~Q~~~l~~~lTv~E~l 142 (508)
.++|+|+||+|||||+|.|+|... +.+|.+.++|+++. ...++..++.+|....+..++..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 799999999999999999999742 56799999998642 22344445555655555555556666
Q ss_pred HHHHHh----cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCC----CCccCHHHHHHHHHHHHHh--hCCCEEEEe
Q 010509 143 VFTALL----QLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPL----TRGVSGGERKRVSIGQEIL--INPSLLFLD 212 (508)
Q Consensus 143 ~~~~~l----~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~----~~~LSGGerqRv~Ia~aL~--~~P~illLD 212 (508)
..+-.. ......+.. ..++.+.++..|..- -.++|.. .+..+--+- .-.+++.+. ...+++
T Consensus 262 ~~ad~vllv~d~~~~~~~~--~~~i~~~l~~~~~~~---ilv~NK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--- 332 (439)
T 1mky_A 262 EKADVVVIVLDATQGITRQ--DQRMAGLMERRGRAS---VVVFNKWDLVVHREKRYDEF-TKLFREKLYFIDYSPLI--- 332 (439)
T ss_dssp HHCSEEEEEEETTTCCCHH--HHHHHHHHHHTTCEE---EEEEECGGGSTTGGGCHHHH-HHHHHHHCGGGTTSCEE---
T ss_pred hhCCEEEEEEeCCCCCCHH--HHHHHHHHHHcCCCE---EEEEECccCCCchhhHHHHH-HHHHHHHhccCCCCcEE---
Confidence 543110 011122332 234455555554321 1111100 001111111 113444443 234444
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH
Q 010509 213 EPTSGLDSTIAQQILSILLKLA 234 (508)
Q Consensus 213 EPtsgLD~~~~~~i~~~L~~l~ 234 (508)
++|+++-....++++.+.+..
T Consensus 333 -~~SA~~g~gv~~l~~~i~~~~ 353 (439)
T 1mky_A 333 -FTSADKGWNIDRMIDAMNLAY 353 (439)
T ss_dssp -ECBTTTTBSHHHHHHHHHHHH
T ss_pred -EEECCCCCCHHHHHHHHHHHH
Confidence 488888888888888777654
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.57 E-value=2.1e-05 Score=75.59 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=32.1
Q ss_pred eeeceEEEEe---CCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEEC
Q 010509 66 ILKGITGMVK---PGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYN 111 (508)
Q Consensus 66 iL~~vs~~v~---~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~ 111 (508)
-|+++|+.+. +|.+++|.|++||||||+++.|+..+.. .+++...
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 3677777776 9999999999999999999999998876 6666543
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.57 E-value=8.5e-06 Score=88.35 Aligned_cols=50 Identities=32% Similarity=0.529 Sum_probs=42.5
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEe
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP 114 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~ 114 (508)
..+++++++.+ +|+.++|+||||+|||||+++|++...+..|+|.++|..
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~ 145 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVR 145 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccc
Confidence 44677888887 899999999999999999999999988888888877743
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.55 E-value=1.8e-05 Score=81.04 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=35.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
+++.+++|+|++|||||||+|.|+|...+.+|+|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecC
Confidence 46889999999999999999999998777778887776654
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.48 E-value=8.2e-05 Score=69.11 Aligned_cols=24 Identities=42% Similarity=0.566 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.-+.|.||+|+|||||+++|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999999754
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00015 Score=72.58 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=35.1
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHcCCCEEEEEecCcc
Q 010509 203 LINPSLLFLDEPTS-GLDSTIAQQILSILLKLANGGRTIVMTIHQPS 248 (508)
Q Consensus 203 ~~~P~illLDEPts-gLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~ 248 (508)
..+|++|++||+-. .-|...+..+...+..+.+.|..+|++++.+.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 35699999999865 33447788899999888777777777776543
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00011 Score=67.65 Aligned_cols=36 Identities=36% Similarity=0.462 Sum_probs=21.0
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
..+++++++..++. .++++|++|+|||||++.+.+.
T Consensus 11 ~~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 11 RDVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 35789999998888 5689999999999999999984
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=97.40 E-value=9.5e-05 Score=69.71 Aligned_cols=44 Identities=11% Similarity=0.195 Sum_probs=30.7
Q ss_pred hCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHcCCCE-EEEEecCc
Q 010509 204 INPSLLFLDEPTSG-LDSTIAQQILSILLKLANGGRT-IVMTIHQP 247 (508)
Q Consensus 204 ~~P~illLDEPtsg-LD~~~~~~i~~~L~~l~~~g~t-ii~s~H~~ 247 (508)
.+|+++++||.-.- -+...+..+.+.+.+..+.+.. +|++++..
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 56899999996542 2233377788888887766655 77777754
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00013 Score=66.00 Aligned_cols=27 Identities=37% Similarity=0.607 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468889999999999999999999864
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=4.1e-05 Score=72.08 Aligned_cols=42 Identities=26% Similarity=0.283 Sum_probs=35.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCCCCccc--EEEECCEe
Q 010509 73 MVKPGEMLAMLGPSGCGKTTLLTALGGRLGRING--RITYNGKP 114 (508)
Q Consensus 73 ~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G--~I~~~G~~ 114 (508)
.+++|.+++|.|++||||||+.+.|++.+.+..| .+.++|..
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 3568999999999999999999999998876778 77777544
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00057 Score=70.05 Aligned_cols=35 Identities=29% Similarity=0.381 Sum_probs=28.5
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 010509 66 ILKGIT--GMVKPGEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 66 iL~~vs--~~v~~Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-|+.+- +=+++|+++.|.|++|+|||||...++..
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 355543 35889999999999999999999888754
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0003 Score=68.84 Aligned_cols=28 Identities=32% Similarity=0.592 Sum_probs=24.3
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+.++.-+.|.||+|+|||||.++++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566679999999999999999999864
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00086 Score=67.26 Aligned_cols=171 Identities=13% Similarity=0.110 Sum_probs=86.7
Q ss_pred eeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEE-ECCEeCChhccccEEEEecCCCCCCCCCHHHHHH
Q 010509 66 ILKGIT-GMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRIT-YNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 66 iL~~vs-~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~-~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
-|+.+- +-+++|+++.|.||+|+|||||...++.......|... ..|.+....-...+.|+.-+..+. ..+-..
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~----~~~l~~ 161 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFR----PERIMQ 161 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCC----HHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCC----HHHHHH
Confidence 344433 56899999999999999999999888753110111100 001110000013466776554321 222221
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH-HHHHHHHHHHhh---CCCEEEEeCCCCCCC
Q 010509 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE-RKRVSIGQEILI---NPSLLFLDEPTSGLD 219 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe-rqRv~Ia~aL~~---~P~illLDEPtsgLD 219 (508)
....+. .+.+ ++++.+- +- +..+..+ .+-+..++.++. +++++++|.-+.-..
T Consensus 162 ~~~~~g----~~~~-------~~~~~l~--------~~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 218 (322)
T 2i1q_A 162 MAEHAG----IDGQ-------TVLDNTF--------VA----RAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR 218 (322)
T ss_dssp HHHHHT----CCHH-------HHHHTEE--------EE----ECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH
T ss_pred HHHHcC----CCHH-------HHhcCEE--------EE----eCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHH
Confidence 221221 1111 1222111 10 1122222 233444555653 589999999875321
Q ss_pred --------HHH----HHHHHHHHHHHHc-CCCEEEEEecCcc---------------hHHHhhccEEEEEeC
Q 010509 220 --------STI----AQQILSILLKLAN-GGRTIVMTIHQPS---------------NMLYYMFHKVLLLSE 263 (508)
Q Consensus 220 --------~~~----~~~i~~~L~~l~~-~g~tii~s~H~~~---------------~~~~~~~D~v~lL~~ 263 (508)
... ..+++..|+++++ .|.+||++.|-.. ..+.+.+|.++.|..
T Consensus 219 ~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~~~~g~~~~~~~~d~~i~l~~ 290 (322)
T 2i1q_A 219 NEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRK 290 (322)
T ss_dssp HHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CCEESSHHHHHHHCSEEEEEEE
T ss_pred HHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCcCCCCcHHHHhcCcEEEEEEe
Confidence 111 2455666666664 5888888866321 125567888888874
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00024 Score=70.26 Aligned_cols=31 Identities=35% Similarity=0.518 Sum_probs=25.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCCCCccc
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRLGRING 106 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G 106 (508)
|...+.|.||+|+|||||.++|++.....+|
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~~~ 76 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDTEE 76 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSCGG
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCCCc
Confidence 3468999999999999999999997654444
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00012 Score=68.84 Aligned_cols=29 Identities=31% Similarity=0.493 Sum_probs=24.3
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHh
Q 010509 69 GITGMVKPGEMLAMLGPSGCGKTTLLTALG 98 (508)
Q Consensus 69 ~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~ 98 (508)
+.++.+.+| +.+|.|||||||||++++|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 445566665 99999999999999999885
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.29 E-value=5.7e-06 Score=85.15 Aligned_cols=45 Identities=27% Similarity=0.235 Sum_probs=29.7
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCE
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGK 113 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~ 113 (508)
.+.+++++++.| +|+|+||+|||||++.|.|......|.+..++.
T Consensus 29 ~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~ 73 (361)
T 2qag_A 29 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAAE 73 (361)
T ss_dssp THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----------
T ss_pred CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCc
Confidence 456788888887 999999999999999999876544555544443
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00071 Score=71.41 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=30.1
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
.-|+.+.+=+++|+++.|.|++|+|||||.--++..
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 356666666899999999999999999998777753
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=5.1e-05 Score=70.48 Aligned_cols=49 Identities=31% Similarity=0.381 Sum_probs=37.6
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC--------CCcccEEEECCE
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL--------GRINGRITYNGK 113 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~--------~~~~G~I~~~G~ 113 (508)
..+++++|+..++++ ++++|++|+|||||++.+.+.. .+..+.+.++|.
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~ 69 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 69 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTE
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCE
Confidence 457899999888885 6899999999999999999742 234455666553
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.16 E-value=9.1e-05 Score=77.76 Aligned_cols=46 Identities=17% Similarity=0.049 Sum_probs=41.0
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 68 KGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 68 ~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
+++++. +|++++++|+|||||||++..|++.+.+..|+|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence 577777 8999999999999999999999998877788998887765
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00033 Score=72.00 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=27.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHh
Q 010509 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALG 98 (508)
Q Consensus 67 L~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~ 98 (508)
+++.++++.+| +.+|.|||||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 36777888786 99999999999999999986
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.16 E-value=3.9e-05 Score=79.26 Aligned_cols=33 Identities=21% Similarity=0.406 Sum_probs=31.5
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 69 GITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 69 ~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
|+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999864
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00012 Score=67.15 Aligned_cols=35 Identities=31% Similarity=0.460 Sum_probs=29.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEE
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRI 108 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I 108 (508)
..+|.++.|.|++||||||+.+.|++.+....|.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 34789999999999999999999999875555555
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0022 Score=65.47 Aligned_cols=27 Identities=26% Similarity=0.529 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++..-+.|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456678999999999999999999764
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00023 Score=66.53 Aligned_cols=29 Identities=31% Similarity=0.419 Sum_probs=26.0
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45899999999999999999999998663
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00045 Score=69.94 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=23.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999765
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0006 Score=60.95 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.06 E-value=2.7e-06 Score=85.96 Aligned_cols=51 Identities=6% Similarity=0.132 Sum_probs=35.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccE
Q 010509 205 NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHK 257 (508)
Q Consensus 205 ~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~ 257 (508)
+++++++|| ...|++..+..+.+.+.+... ...+|++++++......+.+|
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~~l~~~l~sR 183 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVTRIIDPLASQ 183 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGGGSCHHHHHH
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchhhCcchhhcc
Confidence 567999999 788999888888888877543 345666777765433333333
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00025 Score=65.14 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=26.5
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 010509 69 GITGMVKPGEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 69 ~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57788888999999999999999999999976
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.99 E-value=7e-05 Score=74.94 Aligned_cols=47 Identities=17% Similarity=0.142 Sum_probs=39.7
Q ss_pred ec-eEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 68 KG-ITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 68 ~~-vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
++ ++++.+ |++++++|+||+||||++..|++.+.+..|+|.+.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45 777766 999999999999999999999998876677888876664
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0014 Score=62.75 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=42.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEec---------CcchHHHhhccEEEEEe
Q 010509 205 NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIH---------QPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 205 ~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H---------~~~~~~~~~~D~v~lL~ 262 (508)
+|+++++||--. |+. ++++.++.+++.|.+||++-| .++..+..++|+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 489999999964 553 355666777777999999999 66677888999998864
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0028 Score=60.73 Aligned_cols=26 Identities=38% Similarity=0.617 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+..-+.|.||+|+|||||.++++...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34457899999999999999999754
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00059 Score=63.56 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=31.1
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcch
Q 010509 204 INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSN 249 (508)
Q Consensus 204 ~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~ 249 (508)
.+|.++++||.-. +|......+.+.+.+. ..+..+|++++++..
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQK 168 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChHh
Confidence 3578999999765 7877777776666442 236778888887653
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00037 Score=64.73 Aligned_cols=21 Identities=29% Similarity=0.620 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 010509 79 MLAMLGPSGCGKTTLLTALGG 99 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g 99 (508)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999999
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00032 Score=72.90 Aligned_cols=43 Identities=16% Similarity=0.323 Sum_probs=34.9
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhcC-----------CCCcccEEEECCE
Q 010509 71 TGMVKPGEMLAMLGPSGCGKTTLLTALGGR-----------LGRINGRITYNGK 113 (508)
Q Consensus 71 s~~v~~Ge~~ailG~nGsGKSTLL~~L~g~-----------~~~~~G~I~~~G~ 113 (508)
-+.+..|..++|+|+||+|||||+|+|+|. ..|..|.+.+.|.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 345678889999999999999999999997 4577788887764
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0096 Score=59.76 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.+..-+.|.||+|+|||||.++++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 456678899999999999999999864
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.016 Score=61.79 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=28.8
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 010509 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 66 iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-|+.+.+-+++|+++.|.|++|+|||||+--++-.
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~ 265 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQ 265 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHH
Confidence 45555556999999999999999999998777653
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0029 Score=76.40 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=26.6
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 73 MVKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 73 ~v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
=+++|+++.|.||+|+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 59999999999999999999999998754
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00068 Score=62.37 Aligned_cols=36 Identities=39% Similarity=0.325 Sum_probs=28.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCC---CcccEEEECCE
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRLG---RINGRITYNGK 113 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~~---~~~G~I~~~G~ 113 (508)
.+++|.|+||||||||++.|.+.+. ..-|.|..+++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 5789999999999999999998652 23466766554
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00069 Score=61.67 Aligned_cols=23 Identities=43% Similarity=0.577 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999964
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00077 Score=61.39 Aligned_cols=27 Identities=37% Similarity=0.640 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998643
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00014 Score=74.32 Aligned_cols=38 Identities=18% Similarity=0.369 Sum_probs=34.0
Q ss_pred ceeeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHhcCC
Q 010509 64 KAILKGITGMVKPGEM--LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~--~ailG~nGsGKSTLL~~L~g~~ 101 (508)
..+++++++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 9 ~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 9 DDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3478888888999998 9999999999999999999865
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00062 Score=65.99 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=34.9
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 67 L~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
+++.+ ..+++.++.|+|+|||||||+.+.|+..++ .|.+.++|..+
T Consensus 23 ~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 23 TRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp HTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred HccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 33333 456788999999999999999999998764 24567776543
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00068 Score=62.93 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
..+++|.|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999865
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.004 Score=54.81 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=29.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcc
Q 010509 205 NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPS 248 (508)
Q Consensus 205 ~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~ 248 (508)
+..+|++||.- .|++..+..+.+.|... ..+..+|++|+.+.
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~ 117 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSL 117 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCH
Confidence 44689999984 68888888888888332 22456777776643
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00069 Score=64.97 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=29.4
Q ss_pred HHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHcCCCEEEEEec
Q 010509 199 GQEILINPSLLFLDEPTS-GLDSTIAQQILSILLKLANGGRTIVMTIH 245 (508)
Q Consensus 199 a~aL~~~P~illLDEPts-gLD~~~~~~i~~~L~~l~~~g~tii~s~H 245 (508)
..++..+|+++++||+-. ..+........+.+..+...|..++.++|
T Consensus 78 ~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 78 DALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 334557899999999763 23322222333334445557889999998
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0031 Score=63.62 Aligned_cols=34 Identities=29% Similarity=0.429 Sum_probs=28.0
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 010509 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 67 L~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
|+.+-+-+.+|.++.|.||+|+|||||...++..
T Consensus 113 LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 113 VAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred HHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3333367889999999999999999999999853
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0011 Score=59.15 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999764
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0037 Score=64.19 Aligned_cols=28 Identities=36% Similarity=0.559 Sum_probs=25.0
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhc
Q 010509 72 GMVKPGEMLAMLGPSGCGKTTLLTALGG 99 (508)
Q Consensus 72 ~~v~~Ge~~ailG~nGsGKSTLL~~L~g 99 (508)
+-+++|+++.|.||+|+|||||...++.
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3689999999999999999999877764
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0013 Score=59.35 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=23.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
|.++.|.|++||||||+.+.|+..++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998764
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0012 Score=62.97 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=24.8
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 73 MVKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 73 ~v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.-.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34678899999999999999999999854
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.00062 Score=65.67 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999654
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0015 Score=65.32 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+.-+.|.||+|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999754
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0017 Score=59.04 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
|.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998754
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0051 Score=53.99 Aligned_cols=42 Identities=12% Similarity=0.157 Sum_probs=30.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCc
Q 010509 205 NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQP 247 (508)
Q Consensus 205 ~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~ 247 (508)
+..++++||.- .|+...+..+.+.+.+-.+.+..+|++|+.+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 35689999964 6788888888888877544456677777654
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0019 Score=58.86 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999998754
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.013 Score=58.88 Aligned_cols=27 Identities=30% Similarity=0.472 Sum_probs=21.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHH-HHHhc
Q 010509 72 GMVKPGEMLAMLGPSGCGKTTLL-TALGG 99 (508)
Q Consensus 72 ~~v~~Ge~~ailG~nGsGKSTLL-~~L~g 99 (508)
+=+++| ++.|-||+|+|||||+ .+++.
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 457899 9999999999999994 44443
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.002 Score=62.55 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.+++|+||||||||||.+.|++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999999864
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0038 Score=56.88 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=25.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC-----CCccc----EEEECCE
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL-----GRING----RITYNGK 113 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~-----~~~~G----~I~~~G~ 113 (508)
-++|+|++|+|||||++.+.+.. .++.| .+.++|+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ 65 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence 47899999999999998776642 35555 4555554
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0023 Score=56.83 Aligned_cols=19 Identities=26% Similarity=0.537 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 010509 79 MLAMLGPSGCGKTTLLTAL 97 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L 97 (508)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0024 Score=63.30 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=28.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNG 112 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G 112 (508)
..|.++.|.|||||||||+.+.|+...+ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 3577999999999999999999987543 25566664
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.00069 Score=63.09 Aligned_cols=25 Identities=36% Similarity=0.644 Sum_probs=22.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRLGR 103 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~~~ 103 (508)
+++|.|++||||||+++.|+..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987643
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0027 Score=58.51 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0027 Score=59.53 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhc
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGG 99 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g 99 (508)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999997
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0027 Score=57.67 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999998754
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0031 Score=58.30 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
+|.+++|.|++||||||+.+.|+..++
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 477899999999999999999998654
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0026 Score=59.06 Aligned_cols=23 Identities=43% Similarity=0.647 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 36899999999999999987543
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0029 Score=58.13 Aligned_cols=23 Identities=30% Similarity=0.652 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999865
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.013 Score=59.70 Aligned_cols=27 Identities=33% Similarity=0.576 Sum_probs=22.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++..-+.|.||+|+|||||.++++...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 455568899999999999999999764
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.016 Score=70.90 Aligned_cols=153 Identities=18% Similarity=0.230 Sum_probs=86.7
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHH
Q 010509 66 ILKGIT--GMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 66 iL~~vs--~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
-|+.+- +=+++|+++.|.||+|+|||||...++....... ..+.|+.-+...-+ ++
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G---------------~~vlyis~E~s~~~---~~---- 427 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG---------------KTCAFIDAEHALDP---IY---- 427 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTT---------------CCEEEECTTSCCCH---HH----
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcC---------------CeEEEEEcCCCHHH---HH----
Confidence 455554 3599999999999999999999887775432111 12444443322111 00
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC-H
Q 010509 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEIL--INPSLLFLDEPTSGLD-S 220 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~--~~P~illLDEPtsgLD-~ 220 (508)
+.. +|+.. .+-.+-+ .-+. .+-+.+++.++ .+|+++++|.-++=.. +
T Consensus 428 -a~~----------------------lGvd~-~~L~I~~----~~~~--e~il~~~~~lv~~~~~~lIVIDSL~al~~~~ 477 (2050)
T 3cmu_A 428 -ARK----------------------LGVDI-DNLLCSQ----PDTG--EQALEICDALARSGAVDVIVVDSVAALTPKA 477 (2050)
T ss_dssp -HHH----------------------TTCCT-TTCEEEC----CSSH--HHHHHHHHHHHHHTCCSEEEESCGGGCCCHH
T ss_pred -HHH----------------------cCCCH-HHeEEeC----CCCH--HHHHHHHHHHHHhcCCcEEEECCHHHhhccc
Confidence 111 12110 0001111 1233 23445666665 4799999999876542 1
Q ss_pred ------------HHHHHHHHHHHHH---H-cCCCEEEEEecCcch---------------HHHhhccEEEEEeCCeEEEE
Q 010509 221 ------------TIAQQILSILLKL---A-NGGRTIVMTIHQPSN---------------MLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 221 ------------~~~~~i~~~L~~l---~-~~g~tii~s~H~~~~---------------~~~~~~D~v~lL~~G~iv~~ 269 (508)
..+..+.+.|++| + +.|.+||++.|--.. .+.+.+|-++.|+.......
T Consensus 478 e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~~~~~~ 557 (2050)
T 3cmu_A 478 EIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE 557 (2050)
T ss_dssp HHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEEEEEE
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEecccccC
Confidence 1233455666666 4 458999998874221 36678899998876654444
Q ss_pred c
Q 010509 270 G 270 (508)
Q Consensus 270 G 270 (508)
|
T Consensus 558 g 558 (2050)
T 3cmu_A 558 G 558 (2050)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0026 Score=57.69 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++..+.|.|++||||||+.+.|+..+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998543
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0031 Score=57.16 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999863
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0067 Score=64.73 Aligned_cols=28 Identities=36% Similarity=0.610 Sum_probs=23.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++..-+.|.||+|+|||+|.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3455668999999999999999998754
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0034 Score=56.39 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 010509 78 EMLAMLGPSGCGKTTLLTALGG 99 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g 99 (508)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0034 Score=58.20 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=24.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998754
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0099 Score=62.60 Aligned_cols=54 Identities=7% Similarity=0.133 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHcCCCEEEEEecCcc
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTS-GLDSTIAQQILSILLKLANGGRTIVMTIHQPS 248 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPts-gLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~ 248 (508)
.+++....+...+.+++++++....+ ++.... ..+.+.|+ +.++.+|++.+..+
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK~D 142 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNKLD 142 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEECC-
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEECcc
Confidence 36666677777788888776655544 555443 44555544 35778887777643
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0046 Score=63.46 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=29.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcC-----------CCCcccEEEECC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGR-----------LGRINGRITYNG 112 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~-----------~~~~~G~I~~~G 112 (508)
|-.++|+|.+|+|||||+|.|+|. ..|..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 346899999999999999999983 246678887766
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0021 Score=66.23 Aligned_cols=45 Identities=9% Similarity=0.117 Sum_probs=38.8
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHcCCCEEEEEecCcch
Q 010509 205 NPSLLFLDEPTSGLD---STIAQQILSILLKLANGGRTIVMTIHQPSN 249 (508)
Q Consensus 205 ~P~illLDEPtsgLD---~~~~~~i~~~L~~l~~~g~tii~s~H~~~~ 249 (508)
.|.++++||-=.=++ +..+..+.+.+++.++.|..++++||.|+.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 588999999977774 677788888899988889999999999975
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0058 Score=56.96 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=41.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEec---------CcchHHHhhccEEEEEe
Q 010509 205 NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIH---------QPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 205 ~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H---------~~~~~~~~~~D~v~lL~ 262 (508)
+.+++++||--- +|+. .++.++++++.|..||++-+ .++..+..++|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 479999999543 6533 36677887777999999999 55677889999997765
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0034 Score=57.32 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 367799999999999999999998654
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0035 Score=56.63 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999765
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0032 Score=61.47 Aligned_cols=44 Identities=11% Similarity=0.117 Sum_probs=30.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEE
Q 010509 214 PTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKV 258 (508)
Q Consensus 214 PtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v 258 (508)
|||+++.....++.+.+.++.++ +.+..+..|... .+.+.++++
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~-~~e~~~~~l 188 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDE-DIEREIKHI 188 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCH-HHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCH-HHHHHHHHH
Confidence 89999999999999998887653 444455566543 455555543
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0039 Score=57.24 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999975
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.004 Score=57.77 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=24.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999999654
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0047 Score=56.15 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998643
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.072 Score=64.44 Aligned_cols=153 Identities=20% Similarity=0.255 Sum_probs=86.8
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHH
Q 010509 66 ILKGIT--GMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 66 iL~~vs--~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
-|+.+- +=+++|+++.|.||+|+|||||.-.++...... | ..+.|+.-+...-+ + .
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~-------G--------~~vlyis~E~s~~~---~----~ 427 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-------G--------KTCAFIDAEHALDP---I----Y 427 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-------T--------CCEEEECTTSCCCH---H----H
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-------C--------CCeEEEEccCchHH---H----H
Confidence 456654 358999999999999999999987776532111 1 23555554432211 0 0
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCH-
Q 010509 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEIL--INPSLLFLDEPTSGLDS- 220 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~--~~P~illLDEPtsgLD~- 220 (508)
+ +.+|+.. .+-.+-+ .-++.| -+.+++.++ .+|+++++|..++=...
T Consensus 428 -a----------------------~~lGvd~-~~L~i~~----~~~~e~--~l~~l~~lv~~~~~~lVVIDSL~al~~~~ 477 (1706)
T 3cmw_A 428 -A----------------------RKLGVDI-DNLLCSQ----PDTGEQ--ALEICDALARSGAVDVIVVDSVAALTPKA 477 (1706)
T ss_dssp -H----------------------HHTTCCG-GGCEEEC----CSSHHH--HHHHHHHHHHHTCCSEEEESCSTTCCCHH
T ss_pred -H----------------------HHcCCCH-HHeEEcC----CCCHHH--HHHHHHHHHHhcCCCEEEECCHHHhhccc
Confidence 1 1122211 0001110 113333 234555554 47999999999876541
Q ss_pred ------------HHHHHHHHHHHHH---H-cCCCEEEEEecCcc---------------hHHHhhccEEEEEeCCeEEEE
Q 010509 221 ------------TIAQQILSILLKL---A-NGGRTIVMTIHQPS---------------NMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 221 ------------~~~~~i~~~L~~l---~-~~g~tii~s~H~~~---------------~~~~~~~D~v~lL~~G~iv~~ 269 (508)
.....+.+.+++| + +.|.+||++.|-.. ..+.+.+|-++.+...+.+..
T Consensus 478 e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~~~~~ 557 (1706)
T 3cmw_A 478 EIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE 557 (1706)
T ss_dssp HHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEEEEE
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEecccccc
Confidence 1223345555555 3 35999999988421 246678998888876554444
Q ss_pred c
Q 010509 270 G 270 (508)
Q Consensus 270 G 270 (508)
|
T Consensus 558 g 558 (1706)
T 3cmw_A 558 G 558 (1706)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.037 Score=56.79 Aligned_cols=27 Identities=37% Similarity=0.614 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++.-+.|.||+|+|||+|.++|+...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999998764
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0042 Score=56.33 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++.|.|++||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999765
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.029 Score=58.77 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=23.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++-.=+.+-||+|+|||+|.+++|+..
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 3444557889999999999999999864
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0049 Score=56.38 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.+++|+|++|||||||++.|+..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 378999999999999999999865
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0057 Score=57.44 Aligned_cols=27 Identities=30% Similarity=0.530 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|..+.|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998754
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0046 Score=56.10 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-.++|+|++|+|||||++.|.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999864
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0085 Score=60.16 Aligned_cols=37 Identities=30% Similarity=0.302 Sum_probs=33.1
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
....+|+....+ .|.-++|.|+||+|||||...|.++
T Consensus 131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 457899988888 8999999999999999999999875
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0048 Score=54.19 Aligned_cols=23 Identities=13% Similarity=0.407 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999999853
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0043 Score=56.82 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=24.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467799999999999999999998754
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0055 Score=54.31 Aligned_cols=23 Identities=35% Similarity=0.681 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 37899999999999999999864
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0056 Score=53.90 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999984
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.051 Score=57.00 Aligned_cols=70 Identities=20% Similarity=0.395 Sum_probs=43.6
Q ss_pred HHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHc----CCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 199 GQEILINPSLLFLDEPTS----------GLDSTIAQQILSILLKLAN----GGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 199 a~aL~~~P~illLDEPts----------gLD~~~~~~i~~~L~~l~~----~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
..|-...|.|+|+||--+ +-|......+.++|..+-. .+..||.+|+.|.. .|.- ++..|
T Consensus 268 ~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~-----LDpA-llRpG 341 (437)
T 4b4t_L 268 AYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT-----LDPA-LLRPG 341 (437)
T ss_dssp HHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS-----SCTT-TTSTT
T ss_pred HHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchh-----hCHH-HhCCC
Confidence 334456799999999843 2344455566677777632 35789999998863 2332 23455
Q ss_pred e---EEEEcChhh
Q 010509 265 Y---PLYSGEASG 274 (508)
Q Consensus 265 ~---iv~~G~~~~ 274 (508)
| .++.+.|+.
T Consensus 342 RfD~~I~i~lPd~ 354 (437)
T 4b4t_L 342 RLDRKVEIPLPNE 354 (437)
T ss_dssp SEEEEECCCCCCH
T ss_pred ccceeeecCCcCH
Confidence 4 366676653
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0045 Score=54.42 Aligned_cols=22 Identities=36% Similarity=0.688 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|+|++|+|||||++.+.|..
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEECCCCCCHHHHHHHHcCcc
Confidence 6899999999999999999864
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0056 Score=56.32 Aligned_cols=22 Identities=41% Similarity=0.732 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4799999999999999999864
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0055 Score=53.54 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998753
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.026 Score=53.51 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=43.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEec---------CcchHHHhhccEEEEEe
Q 010509 205 NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIH---------QPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 205 ~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H---------~~~~~~~~~~D~v~lL~ 262 (508)
+.+++++||--- +|.. .++.|++++..|..||++-+ .++..+..++|.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999865 6533 33777787777999999999 77888889999998875
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.051 Score=56.38 Aligned_cols=48 Identities=27% Similarity=0.373 Sum_probs=32.0
Q ss_pred HHhhCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHH----cCCCEEEEEecCcc
Q 010509 201 EILINPSLLFLDEPTSG----------LDSTIAQQILSILLKLA----NGGRTIVMTIHQPS 248 (508)
Q Consensus 201 aL~~~P~illLDEPtsg----------LD~~~~~~i~~~L~~l~----~~g~tii~s~H~~~ 248 (508)
|--..|.|+|+||--+- =|......+.++|..+- ..+..||.+|+.|.
T Consensus 237 Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd 298 (405)
T 4b4t_J 237 AREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLD 298 (405)
T ss_dssp HHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSS
T ss_pred HHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChh
Confidence 33456999999996542 23445555666666663 23668899999886
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0057 Score=53.39 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999864
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0056 Score=53.54 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++++|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999999753
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0062 Score=53.68 Aligned_cols=22 Identities=41% Similarity=0.729 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|+|++|+|||||++.+.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 6899999999999999998754
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0052 Score=53.56 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++++|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999998754
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0059 Score=54.33 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999854
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.039 Score=57.77 Aligned_cols=27 Identities=33% Similarity=0.602 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++-.=+.+.||+|+|||+|.+++|+..
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344448899999999999999999864
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0073 Score=58.67 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||+|.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999974
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0062 Score=53.58 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++++|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37999999999999999999864
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0064 Score=56.04 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999999999865
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0049 Score=55.71 Aligned_cols=26 Identities=35% Similarity=0.494 Sum_probs=18.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998654
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0063 Score=53.63 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999753
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0064 Score=53.39 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++++|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998754
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0068 Score=57.26 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=22.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++.+++|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999999654
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0065 Score=53.28 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++++|++|+|||||++.+.+.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999875
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0067 Score=59.59 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0065 Score=60.63 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||+|.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999964
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0067 Score=53.93 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|+|++|+|||||++.+.+..
T Consensus 10 i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7999999999999999998753
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=95.47 E-value=0.006 Score=53.65 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999999754
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0084 Score=55.34 Aligned_cols=26 Identities=35% Similarity=0.549 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.+.+++|.|++||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45579999999999999999998754
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0068 Score=53.93 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998754
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0063 Score=55.20 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999863
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0092 Score=53.06 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.-.++|+|++|+|||||++.+.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4468999999999999999998853
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.052 Score=52.07 Aligned_cols=53 Identities=21% Similarity=0.245 Sum_probs=43.7
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecC---------cchHHHhhccEEEEEe
Q 010509 204 INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQ---------PSNMLYYMFHKVLLLS 262 (508)
Q Consensus 204 ~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~---------~~~~~~~~~D~v~lL~ 262 (508)
.+.+++++||----.| +.+.++.+++.|+.||++-++ +...+..++|.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999876644 666666666689999999999 8888889999998874
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0081 Score=55.99 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997644
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0067 Score=53.94 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999999863
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0069 Score=54.65 Aligned_cols=23 Identities=43% Similarity=0.572 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999864
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0087 Score=54.33 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0077 Score=52.83 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999974
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0078 Score=53.99 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999999854
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0078 Score=54.38 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999999864
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0073 Score=54.32 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999864
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0089 Score=53.16 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 37999999999999999999753
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0096 Score=54.91 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
..+++|.|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999998654
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.014 Score=54.07 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37999999999999999998753
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0083 Score=52.89 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++++|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0075 Score=56.67 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998754
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0082 Score=53.64 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.01 Score=53.08 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++++|.|+.||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998754
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0084 Score=53.89 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999743
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0096 Score=55.54 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998654
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0088 Score=52.42 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++++|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999863
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.011 Score=57.36 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999975
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0086 Score=54.36 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999999854
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.01 Score=53.71 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
..+++|.|++||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998643
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.011 Score=52.61 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998754
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0058 Score=54.73 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=20.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHhc
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGG 99 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g 99 (508)
.--++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999985
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.012 Score=56.63 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++-.++|.||+||||||+.+.|+..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56689999999999999999998643
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0087 Score=54.29 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998754
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.01 Score=59.06 Aligned_cols=26 Identities=38% Similarity=0.589 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+.| .++|+|++|+|||||+|.|.|..
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 345 58999999999999999999864
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.0086 Score=53.09 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.0095 Score=53.06 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.0096 Score=52.80 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999999854
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.0096 Score=53.21 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 47999999999999999999753
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.01 Score=53.56 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.|..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 36899999999999999999875
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.01 Score=53.66 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++++|++|+|||||++.|.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999854
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.01 Score=52.85 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999754
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.0092 Score=58.27 Aligned_cols=22 Identities=41% Similarity=0.493 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|+|++|+|||||+|.|.|..
T Consensus 11 I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999998854
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.012 Score=53.05 Aligned_cols=26 Identities=38% Similarity=0.479 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+.=-++++|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999999754
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.00 E-value=0.011 Score=54.90 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.011 Score=53.99 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37999999999999999998753
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.011 Score=54.04 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999854
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.01 Score=53.22 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.015 Score=51.90 Aligned_cols=27 Identities=26% Similarity=0.566 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998764
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.012 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999999854
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.012 Score=53.30 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|+|++|+|||||++.+.+..
T Consensus 19 i~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999999854
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.023 Score=53.42 Aligned_cols=38 Identities=26% Similarity=0.296 Sum_probs=31.1
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
....++..-..+ .|..++|+||+|+|||||...|+.+.
T Consensus 21 ~~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 21 ERRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred cceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 345677766655 68899999999999999999999764
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.92 E-value=0.011 Score=53.66 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=94.89 E-value=0.012 Score=56.62 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.012 Score=52.60 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 36899999999999999999753
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=94.87 E-value=0.013 Score=52.44 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++++|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.011 Score=53.25 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999999853
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.86 E-value=0.014 Score=53.38 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999854
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.014 Score=56.10 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998854
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.83 E-value=0.012 Score=53.58 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998754
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.014 Score=54.76 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+|-.+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35578999999999999999998754
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=94.81 E-value=0.014 Score=56.63 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999854
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.013 Score=53.36 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998753
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=94.79 E-value=0.012 Score=60.36 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999984
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.016 Score=54.79 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998654
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.016 Score=53.92 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
...+++|.|++||||||+.+.|+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999999999865
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.014 Score=52.83 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998743
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.042 Score=62.47 Aligned_cols=24 Identities=42% Similarity=0.709 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
..+.|.||+|+|||+|.+.|+...
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999865
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.014 Score=53.51 Aligned_cols=22 Identities=32% Similarity=0.638 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999973
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.014 Score=57.79 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|||||||++.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.014 Score=54.36 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998753
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.014 Score=57.21 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|||||||+|.|.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.013 Score=53.82 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 57999999999999999999864
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=94.72 E-value=0.015 Score=51.90 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.16 Score=53.35 Aligned_cols=27 Identities=33% Similarity=0.472 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
++.+++++|++|+||||+...|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999997653
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.013 Score=52.29 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999953
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.015 Score=52.83 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999999754
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.70 E-value=0.015 Score=52.52 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++|+|++|+|||||++.+.+.
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999964
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.008 Score=55.92 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.012 Score=53.40 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.015 Score=52.67 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999853
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.015 Score=53.41 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998753
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.66 E-value=0.014 Score=53.03 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999999854
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.015 Score=52.66 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.019 Score=54.58 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=23.9
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++..++.|+||+||||+|..+.|+-.+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456788999999999999999999754
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.66 E-value=0.015 Score=52.40 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999999854
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.016 Score=54.55 Aligned_cols=23 Identities=13% Similarity=0.359 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||++.+.+..
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998853
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.014 Score=53.63 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.63 E-value=0.016 Score=52.86 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999999853
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.017 Score=56.37 Aligned_cols=29 Identities=24% Similarity=0.469 Sum_probs=22.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCccc
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRLGRING 106 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~~~~~G 106 (508)
-.++++|.+|+|||||+|.|.|......|
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~ 128 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG 128 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC
Confidence 47899999999999999999997643334
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.016 Score=52.70 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.018 Score=53.33 Aligned_cols=23 Identities=43% Similarity=0.507 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999999854
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.61 E-value=0.016 Score=53.29 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
=-++|+|++|+|||||++.+.+..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999999753
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.014 Score=52.47 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999853
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.016 Score=52.96 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999998754
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.021 Score=53.90 Aligned_cols=27 Identities=37% Similarity=0.578 Sum_probs=24.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-+|.++++.|++||||||+.+.|+..+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998765
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.015 Score=55.55 Aligned_cols=29 Identities=34% Similarity=0.509 Sum_probs=21.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 73 MVKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 73 ~v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+..+|.++.+.|++||||||+.+.|+..+
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999999998765
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=94.54 E-value=0.02 Score=56.27 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~ 100 (508)
.++.|.|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999963
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.017 Score=56.78 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHhc
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGG 99 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g 99 (508)
..+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999983
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=94.52 E-value=0.024 Score=57.39 Aligned_cols=26 Identities=27% Similarity=0.597 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++.++.|+||+|||||||-..|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45689999999999999999999876
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.021 Score=54.10 Aligned_cols=26 Identities=35% Similarity=0.560 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.+..+.|+|++||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999999754
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.018 Score=53.73 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999998754
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=94.50 E-value=0.014 Score=52.11 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++++|++|+|||||++.+.+..
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998753
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.02 Score=52.26 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999999753
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.016 Score=56.68 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.44 E-value=0.017 Score=53.34 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.11 Score=58.13 Aligned_cols=23 Identities=43% Similarity=0.742 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.+.+.||+|+|||+|.++|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999865
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=94.43 E-value=0.011 Score=58.73 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=19.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++-+++|-||+||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998744
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.021 Score=52.20 Aligned_cols=23 Identities=13% Similarity=0.343 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 47899999999999999999865
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.019 Score=52.05 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 47999999999999999998753
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.019 Score=51.22 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
..+..+.|.||+|+|||||++.++...
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345677899999999999999998764
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.02 Score=53.29 Aligned_cols=22 Identities=36% Similarity=0.794 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999974
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=94.34 E-value=0.02 Score=52.93 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999754
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.013 Score=52.45 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=9.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.31 E-value=0.018 Score=53.40 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999853
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.029 Score=52.93 Aligned_cols=60 Identities=22% Similarity=0.279 Sum_probs=40.4
Q ss_pred hhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcch---------HHHhhccEEEEEe
Q 010509 203 LINPSLLFLDEPTS----GLDSTIAQQILSILLKLANG-GRTIVMTIHQPSN---------MLYYMFHKVLLLS 262 (508)
Q Consensus 203 ~~~P~illLDEPts----gLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~---------~~~~~~D~v~lL~ 262 (508)
-.+|+++++|--+. .-|.....+++..|++++++ |.+++++.|.... .+...+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 35788999986432 12445556777888887764 9999999886422 1345789888875
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.022 Score=59.35 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.+.+++.|+|++||||||+.+.|+..+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999998654
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.019 Score=52.47 Aligned_cols=22 Identities=36% Similarity=0.434 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++|+|++|+|||||++.+.+.
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999764
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=94.25 E-value=0.012 Score=62.29 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=28.8
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 66 iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++.+ ..+-+|+..+|+|+||+|||||++.|++..
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 44444 456689999999999999999999998754
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=94.22 E-value=0.02 Score=52.58 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999999853
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.025 Score=54.45 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+|.++++.|++||||||+.+.|+..+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999998865
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.019 Score=53.59 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999999865
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.022 Score=55.11 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46999999999999999999864
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=94.13 E-value=0.027 Score=52.95 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++.|+||+||||+|.-+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999754
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.06 E-value=0.023 Score=51.52 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++++|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999975
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=94.05 E-value=0.024 Score=55.11 Aligned_cols=23 Identities=22% Similarity=0.528 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++++|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999854
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.05 E-value=0.028 Score=52.85 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.|..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999999743
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=94.00 E-value=0.029 Score=53.23 Aligned_cols=33 Identities=27% Similarity=0.361 Sum_probs=27.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEE
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRI 108 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I 108 (508)
++|.++.+.|++||||||+.+.|+..+.. .+.+
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~-~~~~ 35 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL 35 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS-SEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc-cceE
Confidence 36899999999999999999999987654 3443
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.028 Score=57.05 Aligned_cols=25 Identities=24% Similarity=0.563 Sum_probs=22.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
.+++|.||+|||||||.+.|+..++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999998653
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.081 Score=64.87 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=30.7
Q ss_pred eeeceEE--EEeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 66 ILKGITG--MVKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 66 iL~~vs~--~v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-|+.+.+ =+++|+++.|-|++|+|||||+..++...
T Consensus 719 eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~ 756 (2050)
T 3cmu_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3566664 69999999999999999999999988754
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.013 Score=54.43 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.|.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998653
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=93.97 E-value=0.02 Score=55.40 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=24.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 577899999999999999999999865
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.03 Score=52.89 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+|.++.+-|++||||||+.+.|+..+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999998865
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.93 E-value=0.032 Score=53.11 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.|.+++|-|+.||||||+.+.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999999865
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=93.91 E-value=0.034 Score=55.80 Aligned_cols=25 Identities=36% Similarity=0.644 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+.+++|+||+|||||||...|+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999999765
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=93.88 E-value=0.036 Score=52.84 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=24.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
.+|.++.+.|++||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999999987653
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.027 Score=52.53 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-.++|+|++|+|||||++.+++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998753
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.86 E-value=0.028 Score=52.47 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=93.85 E-value=0.019 Score=51.90 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++++|++|+|||||++.+.+.
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999764
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.027 Score=51.81 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 47999999999999999998753
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=93.77 E-value=0.013 Score=53.38 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=4.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.055 Score=49.68 Aligned_cols=36 Identities=22% Similarity=0.117 Sum_probs=28.5
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
+..+|..-.. -.|.-++|.|+||+|||||...|..+
T Consensus 4 ~~~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 4 KQTWHANFLV-IDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp CEEEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred cEEEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4556665555 46889999999999999999888764
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=93.67 E-value=0.035 Score=55.91 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=22.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
.++.|+||+|||||||-+.|+..++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998653
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=93.60 E-value=0.03 Score=51.59 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++++|++|+|||||++.+.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5789999999999999999864
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.032 Score=51.41 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++|+|++|+|||||++.+.+.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.035 Score=51.72 Aligned_cols=22 Identities=36% Similarity=0.691 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=0.11 Score=55.02 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=53.2
Q ss_pred CCccCHHHHHHHHHHHH--Hhh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCc
Q 010509 185 TRGVSGGERKRVSIGQE--ILI---------------NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQP 247 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~a--L~~---------------~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~ 247 (508)
..+.||||+|-.-+|.+ ++. .-.++++||. +-+|...+...+++++++ |.-+|+++-+
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~- 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE- 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-
Confidence 45899999996544433 322 1157999999 999999999999999987 7777777755
Q ss_pred chHHHhhccEEEEEe
Q 010509 248 SNMLYYMFHKVLLLS 262 (508)
Q Consensus 248 ~~~~~~~~D~v~lL~ 262 (508)
.+....|.++.+.
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 3556678877764
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.40 E-value=0.041 Score=56.64 Aligned_cols=37 Identities=32% Similarity=0.538 Sum_probs=29.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC-----------CCcccEEEECCEeC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL-----------GRINGRITYNGKPF 115 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~-----------~~~~G~I~~~G~~~ 115 (508)
-+||+|.+-+|||||+|.|+|.. .|..|.+.++|.++
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i 121 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKI 121 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEE
Confidence 48999999999999999999954 24457788877653
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.36 E-value=0.053 Score=53.40 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
+-.++++|.+|+|||||+|.|.|...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCce
Confidence 34689999999999999999999753
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=93.27 E-value=0.051 Score=54.42 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=22.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
..++.|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999999765
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=93.27 E-value=0.047 Score=50.15 Aligned_cols=53 Identities=13% Similarity=0.244 Sum_probs=38.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcc---------hHHHhhccEEEEEe
Q 010509 205 NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPS---------NMLYYMFHKVLLLS 262 (508)
Q Consensus 205 ~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~---------~~~~~~~D~v~lL~ 262 (508)
+++++++||-=. +|+ .+++.|++++++|..|+++-++.+ ..+...+|.+.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999743 443 366777777777999999988443 45566789887765
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=93.04 E-value=0.045 Score=55.13 Aligned_cols=28 Identities=29% Similarity=0.548 Sum_probs=24.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
.+|..+.|.||+|+|||||.+.++....
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567899999999999999999998764
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=92.97 E-value=0.052 Score=53.21 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++.-+.|.||+|+|||||.+.++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 355678999999999999999998765
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.94 E-value=0.053 Score=49.46 Aligned_cols=42 Identities=14% Similarity=0.231 Sum_probs=29.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcc
Q 010509 205 NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPS 248 (508)
Q Consensus 205 ~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~ 248 (508)
++.++++||. ..++......+.+.+.+.. .+..+|++++.+.
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~~ 143 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMYS-KSCRFILSCNYVS 143 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhcC-CCCeEEEEeCChh
Confidence 5789999995 4567777777777766532 3566777777654
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=92.92 E-value=0.073 Score=52.86 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=21.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
+--++|+|++|+|||||++.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345799999999999999998876
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=92.82 E-value=0.057 Score=56.02 Aligned_cols=25 Identities=24% Similarity=0.551 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-.+++|+||+|||||||.+.|+..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3478999999999999999999765
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=92.81 E-value=0.056 Score=51.79 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
--+||+|++||||||+.+.|+..+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 357999999999999999998754
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=92.72 E-value=0.027 Score=54.24 Aligned_cols=27 Identities=37% Similarity=0.709 Sum_probs=22.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 73 MVKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 73 ~v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
....| +.|.||+|+|||||.++|++..
T Consensus 42 ~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 42 KIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 33445 7789999999999999999853
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=92.72 E-value=0.1 Score=54.51 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|.+++|||||+|.|.|..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~ 25 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKK 25 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999853
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=92.64 E-value=0.065 Score=54.41 Aligned_cols=26 Identities=35% Similarity=0.552 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
..-.++|+|++|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 44589999999999999999998764
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=92.64 E-value=0.053 Score=56.14 Aligned_cols=41 Identities=15% Similarity=0.037 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEE
Q 010509 162 CAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFL 211 (508)
Q Consensus 162 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illL 211 (508)
.++++++.++.... ...+|.+|.+++.-..-+...|-++++
T Consensus 181 ~~~~~l~~l~~~~~---------~~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 181 DVWEAMHKLNLPED---------PTKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHTTCCSC---------GGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHhccCCc---------cccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 45667777766543 126899998888777666778988887
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=92.63 E-value=0.039 Score=55.97 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=92.57 E-value=0.053 Score=56.66 Aligned_cols=22 Identities=27% Similarity=0.688 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
.++|+|++|+|||||+|.|+|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.74 E-value=0.022 Score=52.20 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++|+|++|+|||||++.+.+.
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 4899999999999999988753
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=92.48 E-value=0.068 Score=51.62 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
.+..-+.|.||+|+|||||.++++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45557889999999999999999975
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 508 | ||||
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-37 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 8e-36 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 4e-35 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-33 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 5e-33 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 6e-33 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-32 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 5e-32 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-31 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-31 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-30 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-30 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-30 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-29 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 4e-29 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 6e-27 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 6e-26 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 4e-24 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 7e-24 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 5e-20 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-08 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 9e-08 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 5e-07 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 3e-04 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.002 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 135 bits (342), Expect = 2e-37
Identities = 56/210 (26%), Positives = 95/210 (45%), Gaps = 12/210 (5%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS- 116
K+ + + +K GE L +LGPSGCGKTT L + G GRI + + +
Sbjct: 13 TKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTY 72
Query: 117 -NQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC 175
RN V Q + P++TV E + F ++ F + E K L + E
Sbjct: 73 LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEEL 129
Query: 176 KNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN 235
N +SGG+R+RV++ + I++ P +L +DEP S LD+ + + + + KL
Sbjct: 130 LNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 184
Query: 236 -GGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
T + H + M ++ +++ G
Sbjct: 185 KLKVTTIYVTHDQVEAM-TMGDRIAVMNRG 213
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 131 bits (330), Expect = 8e-36
Identities = 56/219 (25%), Positives = 103/219 (47%), Gaps = 17/219 (7%)
Query: 55 YGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP 114
Y ++I LK + +K GE ++++GPSG GK+T+L +G G + +
Sbjct: 11 YKMGEEIIY--ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIK 68
Query: 115 FSN--------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAV 166
++ GFV Q+ L P LT E + + + + + +E+ K A
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC 128
Query: 167 MTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQI 226
+ L E + L SGG+++RV+I + + NP ++ D+PT LDS ++I
Sbjct: 129 LKMAELEERFANHKPNQL----SGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKI 184
Query: 227 LSILLKLA-NGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
+ +L KL G+T+V+ H + + +++ L +G
Sbjct: 185 MQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDG 221
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 130 bits (328), Expect = 4e-35
Identities = 50/208 (24%), Positives = 93/208 (44%), Gaps = 16/208 (7%)
Query: 57 SNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116
S+ + +LK I ++ GEMLA+ G +G GKT+LL + G L G I ++G+
Sbjct: 42 SHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR--- 98
Query: 117 NQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK 176
F +Q + P T+ E ++F + K +K + +E
Sbjct: 99 ------VSFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQD 148
Query: 177 NSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG 236
N+++G +SGG+R R+S+ + + + L LD P LD +Q+ +
Sbjct: 149 NTVLGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA 207
Query: 237 GRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
+T ++ + ++ K+L+L +G
Sbjct: 208 NKTRILVTSKMEHLR--KADKILILHQG 233
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 124 bits (313), Expect = 3e-33
Identities = 55/224 (24%), Positives = 105/224 (46%), Gaps = 24/224 (10%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117
+K+ +LKG++ + G++++++G SG GK+T L + G I NG+ +
Sbjct: 9 HKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINL 68
Query: 118 -----------------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKI 160
+ V Q L ++TV E ++ + L S + +
Sbjct: 69 VRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLS--KHDAR 126
Query: 161 KCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDS 220
+ A + ++G+ E G +SGG+++RVSI + + + P +L DEPTS LD
Sbjct: 127 ERALKYLAKVGIDE----RAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDP 182
Query: 221 TIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
+ ++L I+ +LA G+T+V+ H+ ++ V+ L +G
Sbjct: 183 ELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQG 225
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 123 bits (311), Expect = 5e-33
Identities = 52/228 (22%), Positives = 101/228 (44%), Gaps = 21/228 (9%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117
K E L G++ V G++ ++GP+G GK+TL+ + G L GR+ + K +N
Sbjct: 11 VKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITN 70
Query: 118 QMT-----RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFT----------EKEKIKC 162
+ Q +TV E ++ + + E+E ++
Sbjct: 71 KEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEK 130
Query: 163 AEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTI 222
A ++ L LS + G +SGG+ K V IG+ ++ NP ++ +DEP +G+ +
Sbjct: 131 AFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 185
Query: 223 AQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270
A I + +L+L G T ++ H+ +++ + ++ G + G
Sbjct: 186 AHDIFNHVLELKAKGITFLIIEHRL-DIVLNYIDHLYVMFNGQIIAEG 232
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 122 bits (307), Expect = 6e-33
Identities = 43/184 (23%), Positives = 83/184 (45%), Gaps = 13/184 (7%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRN 122
+K +L+ IT ++ G ++ GP+G GKTTLL + L + G I YNG P ++
Sbjct: 13 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPI-TKVKGK 71
Query: 123 TGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGG 182
F+ +E ++ ++V + + A L + K + + + + K L
Sbjct: 72 IFFLPEEIIVPRKISVEDYLKAVASL-----YGVKVNKNEIMDALESVEVLDLKKKL--- 123
Query: 183 PLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL-ANGGRTIV 241
+S G +RV + +L+N + LD+P +D ++L +L++ G I+
Sbjct: 124 ---GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVII 180
Query: 242 MTIH 245
+
Sbjct: 181 SSRE 184
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 122 bits (309), Expect = 1e-32
Identities = 59/235 (25%), Positives = 104/235 (44%), Gaps = 32/235 (13%)
Query: 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG 98
+ + + ++ Y N E ILK I ++ GE +A +G SG GK+TL+ +
Sbjct: 17 IDIDHVSFQ-------YNDN----EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP 65
Query: 99 GRLGRINGRITYNGKPFSN---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFT 155
+G+I +G + RN + Q+D + TV E ++ + T
Sbjct: 66 RFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLG-----RPTAT 120
Query: 156 EKEKIKCAEAVMTELGLSECKNSLIGGPLTR------GVSGGERKRVSIGQEILINPSLL 209
++E ++ A+ + +L G T +SGG+++R+SI + L NP +L
Sbjct: 121 DEEVVEAAKMA----NAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPIL 176
Query: 210 FLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
LDE TS LD I L L+ RT ++ H+ S + K++++ G
Sbjct: 177 ILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLSTIT--HADKIVVIENG 228
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 121 bits (304), Expect = 5e-32
Identities = 47/236 (19%), Positives = 93/236 (39%), Gaps = 33/236 (13%)
Query: 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG 98
L+F ++ + Y E L+ I + G+ +A++G SG GK+T+ + +
Sbjct: 14 LEFRNVTFT-------YPGR----EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT 62
Query: 99 GRLGRINGRITYNGKPFSNQMT----RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSF 154
G I +G V+Q L +
Sbjct: 63 RFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYA-----RTEEY 117
Query: 155 TEKEKIKCAEAVMTELGLSECKNSLIGGPLTR------GVSGGERKRVSIGQEILINPSL 208
+ ++ + A + N + G T +SGG+R+R++I + +L + +
Sbjct: 118 SREQIEEAARMA----YAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPI 173
Query: 209 LFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
L LDE TS LD+ + I + L +L RT ++ H+ S + +++++ +G
Sbjct: 174 LILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTIE--QADEIVVVEDG 226
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 119 bits (300), Expect = 1e-31
Identities = 53/234 (22%), Positives = 102/234 (43%), Gaps = 26/234 (11%)
Query: 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG 98
+K +I K F+ + I+ L ++ V G++ ++G SG GK+TL+ +
Sbjct: 2 IKLSNI------TKVFHQGTRTIQ---ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN 52
Query: 99 GRLGRINGRITYNGKPFSN-------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP 151
G + +G+ + + R G + Q L TV + L
Sbjct: 53 LLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD-- 110
Query: 152 NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFL 211
+ + E + +++ +GL + +S +SGG+++RV+I + + NP +L
Sbjct: 111 -NTPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLC 164
Query: 212 DEPTSGLDSTIAQQILSILLKLA-NGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
DE TS LD + IL +L + G TI++ H+ ++ + V ++S G
Sbjct: 165 DEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNG 217
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 119 bits (299), Expect = 2e-31
Identities = 57/216 (26%), Positives = 106/216 (49%), Gaps = 12/216 (5%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF-- 115
K+I +K ILKGI+ ++ GE+ ++GP+G GKTT L + + +G +T GK
Sbjct: 9 RKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE 68
Query: 116 -SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE 174
+++ + ++ +E + E + F A +S +E + E GL E
Sbjct: 69 EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMV---ERATEIAGLGE 125
Query: 175 CKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLA 234
+ S G +++ I + +++NP L LDEPTSGLD A+++ IL + +
Sbjct: 126 KIKDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 180
Query: 235 NGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270
G TI+++ H + ++ ++ L+ G + +G
Sbjct: 181 QEGLTILVSSHNMLEVE-FLCDRIALIHNGTIVETG 215
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 116 bits (293), Expect = 1e-30
Identities = 57/223 (25%), Positives = 93/223 (41%), Gaps = 26/223 (11%)
Query: 59 KKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117
+ + E L ++G V+ GE+L ++GP+G GK+TLL + G + G I + G+P
Sbjct: 7 QDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAW 65
Query: 118 ---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE 174
++ + +++Q+ V + +K + + V L L +
Sbjct: 66 SATKLALHRAYLSQQQTPPFATPVWHYLTLHQ--------HDKTRTELLNDVAGALALDD 117
Query: 175 CKNSLIGGPLTRGVSGGERKRVSIGQEIL-------INPSLLFLDEPTSGLDSTIAQQIL 227
+SGGE +RV + +L LL LDEP + LD +
Sbjct: 118 KLGRSTN-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD 172
Query: 228 SILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270
IL L G IVM+ H ++ L H+ LL G L SG
Sbjct: 173 KILSALCQQGLAIVMSSHDLNHTL-RHAHRAWLLKGGKMLASG 214
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 117 bits (294), Expect = 1e-30
Identities = 52/231 (22%), Positives = 106/231 (45%), Gaps = 20/231 (8%)
Query: 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG 98
++F+D+ + Y + + +L+G+T ++PGE+ A++GP+G GK+T+ L
Sbjct: 12 VQFQDVSFA-------YPNRP---DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQ 61
Query: 99 GRLGRINGRITYNGKPFSN----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSF 154
G++ +GKP + R V QE + ++ E + + L Q P
Sbjct: 62 NLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAY-GLTQKPTME 119
Query: 155 TEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEP 214
+ A GL + ++ + ++ +SGG+R+ V++ + ++ P +L LD+
Sbjct: 120 EITAAAVKSGAHSFISGLPQGYDTEVDEAGSQ-LSGGQRQAVALARALIRKPCVLILDDA 178
Query: 215 TSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
TS LD+ Q+ +L + R++++ S + +L L G
Sbjct: 179 TSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVE--QADHILFLEGG 227
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 116 bits (291), Expect = 3e-30
Identities = 54/208 (25%), Positives = 97/208 (46%), Gaps = 13/208 (6%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS----N 117
+ IL I +K GE++ ++G SG GK+TL + NG++ +G + N
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 73
Query: 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEA-VMTELGLSECK 176
+ R G V Q++VL +++ L P EK A +
Sbjct: 74 WLRRQVGVVLQDNVLLN-----RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREG 128
Query: 177 NSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG 236
+ I G G+SGG+R+R++I + ++ NP +L DE TS LD I+ + K+
Sbjct: 129 YNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK- 187
Query: 237 GRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
GRT+++ H+ S + +++++ +G
Sbjct: 188 GRTVIIIAHRLSTVK--NADRIIVMEKG 213
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 113 bits (284), Expect = 3e-29
Identities = 61/236 (25%), Positives = 105/236 (44%), Gaps = 20/236 (8%)
Query: 43 DIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG 102
DIV +++ +YG+ +KGI V G+++ ++G +G GKTT L+A+ G +
Sbjct: 4 DIVLEVQSLHVYYGAIH------AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR 57
Query: 103 RINGRITYN-----GKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEK 157
G+I +N KP V + + P LTV E ++ A + E
Sbjct: 58 AQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDK---EG 114
Query: 158 EKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSG 217
K L E L G +SGGE++ ++IG+ ++ P LL +DEP+ G
Sbjct: 115 IKRDLEWIFSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLG 169
Query: 218 LDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273
L + ++ ++ K+ G TI++ + H +L G + G+AS
Sbjct: 170 LAPILVSEVFEVIQKINQEGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKAS 224
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 113 bits (283), Expect = 4e-29
Identities = 56/209 (26%), Positives = 96/209 (45%), Gaps = 14/209 (6%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN---- 117
+ + IL+ I+ +P ++A GPSG GK+T+ + L G IT +G+P N
Sbjct: 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLE 72
Query: 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKN 177
GFV+Q+ + T+ L +T+++ + + + +
Sbjct: 73 NWRSQIGFVSQDSAIMA-----GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPD 127
Query: 178 SLIGGPLTRGV--SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN 235
L RGV SGG+R+R++I + L NP +L LDE T+ LDS + L L
Sbjct: 128 QLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK 187
Query: 236 GGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
GRT ++ H+ S ++ K+ + +G
Sbjct: 188 -GRTTLVIAHRLSTIV--DADKIYFIEKG 213
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 106 bits (267), Expect = 6e-27
Identities = 61/216 (28%), Positives = 100/216 (46%), Gaps = 18/216 (8%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117
K E ++ ++ VK GE + +LGPSGCGKTT L + G G+I K ++
Sbjct: 10 WKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVAD 69
Query: 118 --------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTE 169
R+ V Q L P++TV + + F L+ +E + V
Sbjct: 70 PEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAEL 126
Query: 170 LGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSI 229
LGL+E N R +SGG+R+RV++G+ I+ P + +DEP S LD+ + ++ +
Sbjct: 127 LGLTELLNRKP-----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAE 181
Query: 230 LLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
L KL G T + H M ++ +++ G
Sbjct: 182 LKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRG 216
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 103 bits (259), Expect = 6e-26
Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 12/210 (5%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117
K E + K I + GE + +GPSGCGK+TLL + G +G + K ++
Sbjct: 7 TKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMND 66
Query: 118 QMTR--NTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC 175
G V Q L P+L+V E M F L ++ + V L L+
Sbjct: 67 TPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHL 123
Query: 176 KNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN 235
+ + +SGG+R+RV+IG+ ++ PS+ LDEP S LD+ + Q+ + +L
Sbjct: 124 LDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 178
Query: 236 G-GRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
GRT++ H + K+++L G
Sbjct: 179 RLGRTMIYVTHDQ-VEAMTLADKIVVLDAG 207
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 99.0 bits (246), Expect = 4e-24
Identities = 51/207 (24%), Positives = 96/207 (46%), Gaps = 17/207 (8%)
Query: 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN-------Q 118
L + ++ GE +LGPSG GKTT + + G G + ++ + ++
Sbjct: 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79
Query: 119 MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNS 178
R G V Q L P LT E + F + +++ E V L + N
Sbjct: 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR---VEEVAKILDIHHVLNH 136
Query: 179 LIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-G 237
R +SG +++RV++ + ++ +PSLL LDEP S LD+ + +++ ++ + G
Sbjct: 137 FP-----RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG 191
Query: 238 RTIVMTIHQPSNMLYYMFHKVLLLSEG 264
T+++ H P ++ + +V +L +G
Sbjct: 192 VTLLVVSHDP-ADIFAIADRVGVLVKG 217
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 97.8 bits (243), Expect = 7e-24
Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 15/201 (7%)
Query: 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMT--RNTG 124
L ++ V+ GE +LGP+G GKT L + G +GRI +GK ++ +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA 75
Query: 125 FVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPL 184
FV Q L P++ V + + F ++ + + K +L + +
Sbjct: 76 FVYQNYSLFPHMNVKKNLEFGMRMK------KIKDPKRVLDTARDLKIEHLLDRNP---- 125
Query: 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLA-NGGRTIVMT 243
+SGGE++RV++ + ++ NP +L LDEP S LD + +L L T++
Sbjct: 126 -LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI 184
Query: 244 IHQPSNMLYYMFHKVLLLSEG 264
H M ++ ++ +G
Sbjct: 185 THDQ-TEARIMADRIAVVMDG 204
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 87.0 bits (215), Expect = 5e-20
Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 14/193 (7%)
Query: 75 KPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS--NQMTRNTGFVTQEDVL 132
+ +LGP+G GK+ L + G + G + NG + R GFV Q+ L
Sbjct: 22 MGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYAL 81
Query: 133 SPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192
P+L+V + + + E+ + + +LG++ + +SGGE
Sbjct: 82 FPHLSVYRNIAYG-----LRNVERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGE 131
Query: 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNML 251
R+RV++ + ++I P LL LDEP S +D ++ L + I+ H
Sbjct: 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEA 190
Query: 252 YYMFHKVLLLSEG 264
+ +V ++ G
Sbjct: 191 AMLADEVAVMLNG 203
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 47.7 bits (112), Expect = 5e-07
Identities = 21/169 (12%), Positives = 42/169 (24%), Gaps = 30/169 (17%)
Query: 80 LAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVT 139
+ + G G GKTTL+ + RLG+ R
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKR-------------TGFRI 49
Query: 140 ETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIG 199
T + FT K+ + G++ +
Sbjct: 50 ITTEGKKKIFSSKFFTSKKLVGS-------YGVNVQYFEE---------LAIPILERAYR 93
Query: 200 QEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPS 248
+ ++ +DE + + + + + +V TI
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSK-KFRDLVRQIMHDPNVNVVATIPIRD 141
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 39.5 bits (91), Expect = 3e-04
Identities = 26/168 (15%), Positives = 44/168 (26%), Gaps = 17/168 (10%)
Query: 77 GEMLAMLGPSGCGKTTLLTALGGRLG-------------RINGRITYNGKPFSNQMTRNT 123
G +L + G G GK+T+ AL G I P S+Q R
Sbjct: 4 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMI 63
Query: 124 GFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGP 183
DV Y ++ +++ + ++ +E +
Sbjct: 64 -MQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRG 122
Query: 184 LTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLD-STIAQQILSIL 230
+ L L SG D Q ++ L
Sbjct: 123 GDSLSDPLVVADLHSQFADLGAFEHHVLP--VSGKDTDQALQSAINAL 168
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.5 bits (88), Expect = 0.002
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 203 LINPS-LLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNM 250
PS LDE + LD T Q+I + + + N ++ + +
Sbjct: 351 SYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF 399
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 508 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.86 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.68 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.63 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.23 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.95 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.9 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.17 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 98.03 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.68 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.5 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.32 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.24 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.21 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.21 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.19 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.17 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.16 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.1 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.09 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.97 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.94 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.93 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.91 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.82 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.8 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.79 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.79 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.72 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.71 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.69 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.66 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.62 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.59 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.57 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.57 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.56 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.43 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.42 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.39 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.37 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.36 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.35 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.31 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.27 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.27 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.24 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.24 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 96.21 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.2 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.19 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.15 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.14 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.11 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.1 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.1 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.09 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.07 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.06 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.03 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.02 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.02 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.97 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.94 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 95.93 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.91 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.87 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.86 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.85 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.83 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.79 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.77 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.77 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.75 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.75 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.74 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.67 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.67 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.64 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.61 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.61 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.59 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.56 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.51 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.48 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.47 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 95.45 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.41 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.39 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.36 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 95.26 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.25 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.22 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.21 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.11 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.11 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.02 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.94 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.92 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.89 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.88 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.88 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.85 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.84 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.84 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.82 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 94.77 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.76 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.73 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 94.71 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 94.65 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 94.58 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.55 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 94.55 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 94.54 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.51 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.47 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 94.4 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.39 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 94.37 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.37 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.36 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 94.35 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 94.32 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 94.28 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 94.27 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.21 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 94.21 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.2 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 94.18 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.17 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 94.16 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 94.14 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 94.07 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.06 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.03 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 94.0 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.98 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 93.97 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.95 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 93.95 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 93.94 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 93.92 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.86 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 93.84 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 93.76 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.74 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.73 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.7 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 93.7 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.69 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.66 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 93.63 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 93.6 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.57 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 93.55 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.5 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 93.48 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 93.41 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.3 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 93.26 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.26 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 93.25 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 93.17 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 93.15 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 93.13 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.11 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 93.1 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 93.09 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.09 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.06 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 93.03 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 92.93 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 92.87 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 92.78 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 92.78 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.74 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 92.42 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 92.4 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 92.38 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 92.36 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 92.13 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 92.1 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 92.04 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 91.96 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 91.92 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 91.81 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 91.73 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 91.72 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 91.67 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.51 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 91.5 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.49 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 91.43 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 91.28 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.86 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 90.33 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 90.31 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.28 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 90.22 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 90.12 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 89.81 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 89.75 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 89.66 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 89.51 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 88.5 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 87.83 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 87.21 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 86.64 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 86.52 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 86.43 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 86.3 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 85.99 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 85.75 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 85.48 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.47 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 85.39 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 85.11 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 84.91 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 84.16 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 83.9 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 83.51 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 82.95 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 82.91 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 82.11 | |
| d1g5ta_ | 157 | ATP:corrinoid adenosyltransferase CobA {Salmonella | 81.68 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 81.15 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 80.77 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 80.38 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=6.5e-59 Score=451.09 Aligned_cols=217 Identities=27% Similarity=0.435 Sum_probs=194.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++||+++|+ ++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|++++.
T Consensus 6 ~I~v~nlsk~yg-------------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~ 72 (239)
T d1v43a3 6 EVKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTY 72 (239)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT
T ss_pred eEEEEEEEEEEC-------------CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceeccc
Confidence 589999999975 5789999999999999999999999999999999999999999999999999864
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.+|||||++.++|.+||+||+.|.+..+ ..++++.+++++++++.+||++.+|+++ ++||||||||
T Consensus 73 ~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QR 144 (239)
T d1v43a3 73 LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQR 144 (239)
T ss_dssp SCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHHH
T ss_pred CCcccceEEEEeechhhcccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHH
Confidence 45678999999999999999999999876554 4678889999999999999999888765 4999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
|+|||||+.+|++|+|||||+|||+.++.++++.|++++++ |+|||++|||+. ++.++|||+++|++|+++..|++++
T Consensus 145 vaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~G~iv~~G~~~e 223 (239)
T d1v43a3 145 VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTE 223 (239)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999765 999999999986 5789999999999999999999998
Q ss_pred HH
Q 010509 275 AM 276 (508)
Q Consensus 275 ~~ 276 (508)
+.
T Consensus 224 l~ 225 (239)
T d1v43a3 224 VY 225 (239)
T ss_dssp HH
T ss_pred HH
Confidence 84
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.9e-59 Score=449.88 Aligned_cols=217 Identities=28% Similarity=0.431 Sum_probs=163.6
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++||+++|+ ++++|+||||++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++..
T Consensus 1 Iev~nv~k~yg-------------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~ 67 (232)
T d2awna2 1 VQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDT 67 (232)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTS
T ss_pred CEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCC
Confidence 58899999875 5789999999999999999999999999999999999999999999999999864
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH
Q 010509 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 -~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 196 (508)
..++.+|||||++.++|.+||+||+.++...+ ..++++.+++++++++.++|.+.+|+++. +|||||||||
T Consensus 68 ~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~l~~~~~~~~~-----~LSGGqkQRv 139 (232)
T d2awna2 68 PPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQRV 139 (232)
T ss_dssp CGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC--------------------------
T ss_pred chhhceeeeeccccccccchhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCChhhhhCChh-----hCCHHHHHHH
Confidence 34678999999999999999999999987654 34566778899999999999998887764 8999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
+|||||+.+|++|+|||||+|||+.++.++++.|+++.+ .|+|||++|||+. ++.++|||+++|++|+++..|+++++
T Consensus 140 aiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~G~iv~~G~~~el 218 (232)
T d2awna2 140 AIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLEL 218 (232)
T ss_dssp CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEeCHHHH
Confidence 999999999999999999999999999999999999965 5999999999986 68899999999999999999999998
Q ss_pred HH
Q 010509 276 MN 277 (508)
Q Consensus 276 ~~ 277 (508)
.+
T Consensus 219 ~~ 220 (232)
T d2awna2 219 YH 220 (232)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=5.5e-58 Score=445.18 Aligned_cols=217 Identities=29% Similarity=0.438 Sum_probs=200.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++||+++|+ ++++|+||||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 3 ~i~v~nl~k~yg-------------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~ 69 (240)
T d1g2912 3 GVRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVAD 69 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEE
T ss_pred cEEEEeEEEEEC-------------CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecc
Confidence 589999999985 4679999999999999999999999999999999999999999999999998742
Q ss_pred --------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccC
Q 010509 118 --------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVS 189 (508)
Q Consensus 118 --------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 189 (508)
..++.+|||+|++.++|.+||+||+.++...+ ..++++.+++++++++.+||++.+|+++ ++||
T Consensus 70 ~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~p-----~~LS 141 (240)
T d1g2912 70 PEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP-----RELS 141 (240)
T ss_dssp GGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGSC
T ss_pred cchhhhcccccccceecccchhhcchhhhhHhhhhhHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCC
Confidence 12568999999999999999999999998765 4578888999999999999999888765 5999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEE
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLY 268 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~ 268 (508)
|||||||+|||||+++|++|||||||+|||+.++.++++.|+++.++ |.|||++|||++ ++.++|||+++|++|++++
T Consensus 142 GGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~G~iv~ 220 (240)
T d1g2912 142 GGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQ 220 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999765 999999999986 5789999999999999999
Q ss_pred EcChhhHH
Q 010509 269 SGEASGAM 276 (508)
Q Consensus 269 ~G~~~~~~ 276 (508)
.|+++++.
T Consensus 221 ~G~~~el~ 228 (240)
T d1g2912 221 VGSPDEVY 228 (240)
T ss_dssp EECHHHHH
T ss_pred EcCHHHHH
Confidence 99999875
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=2.8e-58 Score=447.06 Aligned_cols=220 Identities=25% Similarity=0.408 Sum_probs=200.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++||+++|+. +...+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 3 ~i~v~nlsk~y~~-----------g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~ 71 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-----------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVAS 71 (242)
T ss_dssp CEEEEEEEEEEGG-----------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEE
T ss_pred EEEEEeEEEEECC-----------CCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeec
Confidence 5889999999852 24679999999999999999999999999999999999999999999999998742
Q ss_pred -------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 118 -------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 -------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
..++++|||||++.++|.+||+||+.|+...+ ..++++.+++++++++.+||++.+|++++ +|||
T Consensus 72 ~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p~-----~LSG 143 (242)
T d1oxxk2 72 NGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPR-----ELSG 143 (242)
T ss_dssp TTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCH
T ss_pred CchhhcchhhccceEEeccccccccccHHHHhhhhhHhh---cCCHHHHHHHHHHHHhhcChHhhhhCChh-----hCCH
Confidence 23568999999999999999999999986543 46788889999999999999998887764 9999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
||||||+|||||+++|++|||||||+|||+.++.++++.|+++.++ |.|||++|||++ ++.++|||+++|++|+++..
T Consensus 144 GqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~G~iv~~ 222 (242)
T d1oxxk2 144 AQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQV 222 (242)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEE
T ss_pred HHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999654 999999999986 57899999999999999999
Q ss_pred cChhhHHH
Q 010509 270 GEASGAMN 277 (508)
Q Consensus 270 G~~~~~~~ 277 (508)
|+++++.+
T Consensus 223 g~~~el~~ 230 (242)
T d1oxxk2 223 GKPEDLYD 230 (242)
T ss_dssp ECHHHHHH
T ss_pred cCHHHHHh
Confidence 99998854
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.8e-58 Score=445.02 Aligned_cols=220 Identities=23% Similarity=0.371 Sum_probs=199.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++||+++|+... ...++|+||||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 mi~v~nlsk~y~~~~---------~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~ 71 (240)
T d3dhwc1 1 MIKLSNITKVFHQGT---------RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTT 71 (240)
T ss_dssp CEEEEEEEEEEECSS---------CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECT
T ss_pred CEEEEeEEEEeCCCC---------eeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeee
Confidence 489999999987321 12468999999999999999999999999999999999999999999999999842
Q ss_pred -------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 118 -------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 -------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
..|+.+|||||++.++|.+||+||+.++..++ ..++++.+++++++|+.+||.+.+|+++ ++|||
T Consensus 72 ~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~---~~~~~~~~~~v~~~L~~vgL~~~~~~~~-----~~LSG 143 (240)
T d3dhwc1 72 LSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLSG 143 (240)
T ss_dssp TCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTT---TCCTTHHHHHHHHHHHHHSTTTTTSSCB-----SCCCH
T ss_pred CChhhhhhhhccccccccccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCH
Confidence 24568999999999999999999999987654 3456778889999999999999887766 49999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
||||||+|||||+.+|++|||||||+|||+.++.++++.|+++.++ |.|||++|||+. ++..+|||+++|++|++++.
T Consensus 144 G~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~G~iv~~ 222 (240)
T d3dhwc1 144 GQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQ 222 (240)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999775 999999999986 57789999999999999999
Q ss_pred cChhhH
Q 010509 270 GEASGA 275 (508)
Q Consensus 270 G~~~~~ 275 (508)
|+++++
T Consensus 223 G~~~ei 228 (240)
T d3dhwc1 223 DTVSEV 228 (240)
T ss_dssp EETTTT
T ss_pred CCHHHH
Confidence 999986
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.5e-57 Score=437.23 Aligned_cols=213 Identities=25% Similarity=0.389 Sum_probs=194.1
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++||+++|+ ..+|+||||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.+
T Consensus 1 mi~v~nlsk~y~--------------~~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~ 66 (229)
T d3d31a2 1 MIEIESLSRKWK--------------NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTD 66 (229)
T ss_dssp CEEEEEEEEECS--------------SCEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTT
T ss_pred CEEEEEEEEEeC--------------CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccc
Confidence 488999999974 248999999999999999999999999999999999999999999999999864
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.+|||||++.++|.+||+||+.|+...+.. .+ +++++++++.++|.+.+|+.++ +||||||||
T Consensus 67 ~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~---~~---~~~~~~~l~~~~l~~~~~~~~~-----~LSGG~~QR 135 (229)
T d3d31a2 67 LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KD---PKRVLDTARDLKIEHLLDRNPL-----TLSGGEQQR 135 (229)
T ss_dssp SCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CC---HHHHHHHHHHTTCTTTTTSCGG-----GSCHHHHHH
T ss_pred cchhHhcceeeccccccCccccHHHHHHHHHhhccc---cH---HHHHHHHHHHhcchhhHhCChh-----hCCHHHhcc
Confidence 3467899999999999999999999999876532 21 3568899999999999887764 999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
|+|||||+++|++|||||||+|||+.++.++++.|+++.+ .|.|||++|||+. ++.++|||+++|++|++++.|++++
T Consensus 136 vaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~G~iv~~g~~~e 214 (229)
T d3d31a2 136 VALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEE 214 (229)
T ss_dssp HHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHH
T ss_pred hhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999999975 5999999999986 5788999999999999999999998
Q ss_pred HH
Q 010509 275 AM 276 (508)
Q Consensus 275 ~~ 276 (508)
+.
T Consensus 215 l~ 216 (229)
T d3d31a2 215 IF 216 (229)
T ss_dssp HH
T ss_pred HH
Confidence 85
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=9.5e-57 Score=434.12 Aligned_cols=219 Identities=26% Similarity=0.439 Sum_probs=194.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++||+++|+... ....+|+||||+|++||+++|+|||||||||||++|+|+.+|++|+|.++|+++..
T Consensus 1 mI~i~nlsk~y~~~~---------~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~ 71 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGE---------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71 (230)
T ss_dssp CEEEEEEEEEEEETT---------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTT
T ss_pred CEEEEeEEEEeCCCC---------eeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCc
Confidence 478999999987321 13468999999999999999999999999999999999999999999999999853
Q ss_pred ----h---c-cccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCcc
Q 010509 118 ----Q---M-TRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTRGV 188 (508)
Q Consensus 118 ----~---~-~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~L 188 (508)
+ . ++.+|||+|++.++|.+||+||+.++...+.....+.+++.+++.++|+.+||.+ .+++++ .+|
T Consensus 72 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----~~L 146 (230)
T d1l2ta_ 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQL 146 (230)
T ss_dssp CCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GGS
T ss_pred CChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCCh-----hhC
Confidence 1 2 3569999999999999999999999887664445678888889999999999976 456554 599
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 189 SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 189 SGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
||||||||+|||||+++|++|||||||+|||+.++.++++.|+++.++ |+|||++|||++ .+ ++|||+++|++|+++
T Consensus 147 SGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a-~~~drv~~m~~G~Iv 224 (230)
T d1l2ta_ 147 SGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN-VA-RFGERIIYLKDGEVE 224 (230)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH-HH-TTSSEEEEEETTEEE
T ss_pred CHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHH-HH-HhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999765 999999999985 45 789999999999999
Q ss_pred EEcCh
Q 010509 268 YSGEA 272 (508)
Q Consensus 268 ~~G~~ 272 (508)
.+|++
T Consensus 225 ~~g~~ 229 (230)
T d1l2ta_ 225 REEKL 229 (230)
T ss_dssp EEEEC
T ss_pred EeccC
Confidence 99875
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=6.8e-56 Score=431.48 Aligned_cols=233 Identities=24% Similarity=0.384 Sum_probs=212.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++||+++|+ ++++|+||||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.+
T Consensus 2 aI~v~nl~k~yg-------------~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~ 68 (238)
T d1vpla_ 2 AVVVKDLRKRIG-------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE 68 (238)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT
T ss_pred CEEEEeEEEEEC-------------CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEeccc
Confidence 378999999875 5789999999999999999999999999999999999999999999999999854
Q ss_pred ---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHH
Q 010509 118 ---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 118 ---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 194 (508)
..++.+|||||++.+++++|+.||+.+...++ ..++++.+++++++++.++|.+..+++++ +|||||||
T Consensus 69 ~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~~q 140 (238)
T d1vpla_ 69 EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVR 140 (238)
T ss_dssp CHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHHH
T ss_pred ChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCCHHHHhhhhh-----hCCHHHHH
Confidence 45788999999999999999999999988765 34677778889999999999999988875 89999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
|++||+||+++|++|+|||||+|||+.++.++.+++++++++|+|||++||+++ ++..+||||++|++|++++.|++++
T Consensus 141 rv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~~G~iv~~g~~~e 219 (238)
T d1vpla_ 141 KLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEE 219 (238)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999999999999999999999999989999999999997 6889999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCChHHHHHHhh
Q 010509 275 AMNYFASIGYCPSVPTNPSDFLLDLA 300 (508)
Q Consensus 275 ~~~~f~~~g~~~p~~~npad~~~~~~ 300 (508)
+.+.+. ..|..+.+.+++
T Consensus 220 l~~~~~--------~~~~~~~f~~~~ 237 (238)
T d1vpla_ 220 LKERYK--------AQNIEEVFEEVV 237 (238)
T ss_dssp HHHHTT--------CSSHHHHHHHHH
T ss_pred HHhccC--------CchHHHHHHHhh
Confidence 987654 356677776654
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.2e-55 Score=431.35 Aligned_cols=219 Identities=25% Similarity=0.408 Sum_probs=197.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++||+++|+ +.++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 2 ~Lev~nl~k~yg-------------~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~ 68 (258)
T d1b0ua_ 2 KLHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINL 68 (258)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCE
T ss_pred eEEEEEEEEEEC-------------CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEecc
Confidence 489999999975 4679999999999999999999999999999999999999999999999998742
Q ss_pred -----------------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccc
Q 010509 118 -----------------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC-KNSL 179 (508)
Q Consensus 118 -----------------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ 179 (508)
..++.+|||||++.++|.+||.||+.++.... ...++++.++++.++++.+||.+. .++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 146 (258)
T d1b0ua_ 69 VRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDERAQGKY 146 (258)
T ss_dssp EECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHHHHTSC
T ss_pred CCccchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHh--cCCCHHHHHHHHHHHHHHcCCchhhhccC
Confidence 23567999999999999999999999875332 235678888999999999999874 3444
Q ss_pred cCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEE
Q 010509 180 IGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVL 259 (508)
Q Consensus 180 vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~ 259 (508)
+ .+|||||||||+|||||+.+|++|||||||+|||+.++.++++.|++++++|+|||++|||+. ++.++||||+
T Consensus 147 p-----~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri~ 220 (258)
T d1b0ua_ 147 P-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVI 220 (258)
T ss_dssp G-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEE
T ss_pred c-----ccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHH-HHHHhCCEEE
Confidence 4 599999999999999999999999999999999999999999999999989999999999997 5789999999
Q ss_pred EEeCCeEEEEcChhhHHH
Q 010509 260 LLSEGYPLYSGEASGAMN 277 (508)
Q Consensus 260 lL~~G~iv~~G~~~~~~~ 277 (508)
+|++|++++.|+++++.+
T Consensus 221 vm~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 221 FLHQGKIEEEGDPEQVFG 238 (258)
T ss_dssp EEETTEEEEEECHHHHHH
T ss_pred EEECCEEEEEcCHHHHHh
Confidence 999999999999999843
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.3e-55 Score=428.43 Aligned_cols=218 Identities=26% Similarity=0.428 Sum_probs=194.5
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
.+.|+++||+++|+ ++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++
T Consensus 4 d~~Lev~~l~k~yg-------------~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i 70 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDI 70 (240)
T ss_dssp SEEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred ceEEEEeeEEEEEC-------------CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEeccccc
Confidence 46799999999975 57899999999999999999999999999999999999999999999999998
Q ss_pred Ch----h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCCcccccccCCCCCCccC
Q 010509 116 SN----Q-MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTEL-GLSECKNSLIGGPLTRGVS 189 (508)
Q Consensus 116 ~~----~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LS 189 (508)
.. . .+..++|+||+..+++.+||+||+.+.+..+. .++..++.++++++.+ +|.+.+++.++ +||
T Consensus 71 ~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~LS 141 (240)
T d1ji0a_ 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQLGG-----TLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHTTTTSBSS-----SSC
T ss_pred ccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcC----CHHHHHHHHHHHHHHhhChHHHHhCchh-----hCC
Confidence 54 1 24469999999999999999999988764432 2234455677777777 68888887765 899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
|||||||+|||||+++|++|+|||||+|||+.++.++++.|++++++|+|||++||+++ ++.++|||+++|++|++++.
T Consensus 142 GG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~G~iv~~ 220 (240)
T d1ji0a_ 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLETGQIVLE 220 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999988999999999986 57899999999999999999
Q ss_pred cChhhHH
Q 010509 270 GEASGAM 276 (508)
Q Consensus 270 G~~~~~~ 276 (508)
|+++++.
T Consensus 221 g~~~el~ 227 (240)
T d1ji0a_ 221 GKASELL 227 (240)
T ss_dssp EEHHHHH
T ss_pred cCHHHHh
Confidence 9999875
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.3e-54 Score=426.88 Aligned_cols=221 Identities=25% Similarity=0.394 Sum_probs=197.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++||+++|+ ++++|+||||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 4 iL~v~nlsk~yg-------------~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~ 70 (254)
T d1g6ha_ 4 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITN 70 (254)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTT
T ss_pred eEEEEEEEEEEC-------------CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccc
Confidence 589999999875 5689999999999999999999999999999999999999999999999999853
Q ss_pred ----h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcC----------CCCCCHHHHHHHHHHHHHHcCCCcccccccCC
Q 010509 118 ----Q-MTRNTGFVTQEDVLSPYLTVTETMVFTALLQL----------PNSFTEKEKIKCAEAVMTELGLSECKNSLIGG 182 (508)
Q Consensus 118 ----~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~----------~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 182 (508)
+ .++.++|+||++.+++.+||.||+.++...+. .....+++..++++++++.+++.+.+|+.++
T Consensus 71 ~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~- 149 (254)
T d1g6ha_ 71 KEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG- 149 (254)
T ss_dssp CCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG-
T ss_pred hhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchh-
Confidence 2 34469999999999999999999988643221 1112345566788999999999999888876
Q ss_pred CCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 183 PLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 183 ~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
+|||||||||+|||||+.+|++|+|||||+|||+.++.++++.|++++++|+|||++|||++ ++.++||||++|+
T Consensus 150 ----~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~vm~ 224 (254)
T d1g6ha_ 150 ----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMF 224 (254)
T ss_dssp ----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEE
T ss_pred ----hCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhCCEEEEEe
Confidence 89999999999999999999999999999999999999999999999888999999999997 5789999999999
Q ss_pred CCeEEEEcChhhHHH
Q 010509 263 EGYPLYSGEASGAMN 277 (508)
Q Consensus 263 ~G~iv~~G~~~~~~~ 277 (508)
+|++++.|++++..+
T Consensus 225 ~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 225 NGQIIAEGRGEEEIK 239 (254)
T ss_dssp TTEEEEEEESHHHHH
T ss_pred CCEEEEEecHHHHhh
Confidence 999999999987654
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=6e-54 Score=415.66 Aligned_cols=196 Identities=23% Similarity=0.386 Sum_probs=181.3
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--hccccEEEEecCCCCCCCCCHHHHHHHHH
Q 010509 69 GITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--QMTRNTGFVTQEDVLSPYLTVTETMVFTA 146 (508)
Q Consensus 69 ~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~ 146 (508)
||||++. ||+++|+||||||||||+|+|+|+++|++|+|.++|+++.+ ..++.+|||||++.++|.+||+||+.|+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l 95 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGL 95 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTC
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhhh
Confidence 8999995 68999999999999999999999999999999999999864 34678999999999999999999999864
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 010509 147 LLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQI 226 (508)
Q Consensus 147 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i 226 (508)
+ ..++.+++++++++++.+||.+.+++++ ++|||||||||+|||||+++|++|+|||||+|||+.++..+
T Consensus 96 ~-----~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i 165 (240)
T d2onka1 96 R-----NVERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVL 165 (240)
T ss_dssp T-----TSCHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHH
T ss_pred c-----ccCHHHHHHHHHHHHHhcCcHhhhhCCh-----hhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHH
Confidence 2 3467788899999999999999888776 49999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHH
Q 010509 227 LSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 227 ~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~ 276 (508)
++.++++.++ |.|||++|||++ ++.++|||+++|++|+++..|+++++.
T Consensus 166 ~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~G~ii~~G~~~el~ 215 (240)
T d2onka1 166 MEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp HHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEEecHHHHh
Confidence 9999999765 999999999987 578999999999999999999999885
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.7e-52 Score=405.56 Aligned_cols=219 Identities=26% Similarity=0.462 Sum_probs=182.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++||+|+|+. +.+.+|+||||+|++||.+||+||||||||||+++|+|+++|++|+|.+||+++..
T Consensus 1 eI~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~ 69 (241)
T d2pmka1 1 DITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLAL 69 (241)
T ss_dssp EEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT
T ss_pred CeEEEEEEEEeCC-----------CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecc
Confidence 4789999999852 24679999999999999999999999999999999999999999999999999864
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHH--HHHHHc-CCCcccccccCCCCCCccCH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAE--AVMTEL-GLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~--~~l~~l-gL~~~~~~~vg~~~~~~LSG 190 (508)
.+++.++||+|++.+++ .||+||+.++.. ..+.++..+..+ .+.+.+ .+....++.++ ..+..|||
T Consensus 70 ~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~-~~g~~LSG 142 (241)
T d2pmka1 70 ADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMSVEKVIYAAKLAGAHDFISELREGYNTIVG-EQGAGLSG 142 (241)
T ss_dssp SCHHHHHHHEEEECSSCCCTT-SBHHHHHCTTST-----TCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCS-TTTTCCCH
T ss_pred cchhhhhceEEEEecccccCC-ccccccccccCc-----cccHHHHHHHHHHHhhHHHHHhhhcchhhhcC-CCCCccCH
Confidence 46789999999999886 599999987531 223333222211 112222 23445677776 45679999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||||||+|||||+.+|+||+||||||+||+.++.++++.|+++.+ |+|+|++||+++ .+ +.||||++|++|++++.|
T Consensus 143 Gq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~-~~-~~~D~i~vl~~G~Iv~~G 219 (241)
T d2pmka1 143 GQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLS-TV-KNADRIIVMEKGKIVEQG 219 (241)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGG-GG-TTSSEEEEEETTEEEEEE
T ss_pred HHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCHH-HH-HhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999975 899999999996 34 679999999999999999
Q ss_pred ChhhHHH
Q 010509 271 EASGAMN 277 (508)
Q Consensus 271 ~~~~~~~ 277 (508)
+++++.+
T Consensus 220 ~~~ell~ 226 (241)
T d2pmka1 220 KHKELLS 226 (241)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9998853
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=3.9e-53 Score=413.14 Aligned_cols=215 Identities=27% Similarity=0.428 Sum_probs=182.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++||+|+|+. .+.+|+||||++++||++||+||||||||||+++|+|+++|++|+|.+||+++..
T Consensus 1 mle~knvsf~Y~~------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~ 68 (242)
T d1mv5a_ 1 MLSARHVDFAYDD------------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDN 68 (242)
T ss_dssp CEEEEEEEECSSS------------SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTT
T ss_pred CEEEEEEEEECCC------------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEecc
Confidence 4899999998751 3579999999999999999999999999999999999999999999999999864
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELG-------LSECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~ 186 (508)
.+|+++|||+|++.+++. ||+||+.++... ..+.++. .+.++..+ +.+..++.+| +.+.
T Consensus 69 ~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~-~~g~ 138 (242)
T d1mv5a_ 69 ISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEG----DYTDEDL----WQVLDLAFARSFVENMPDQLNTEVG-ERGV 138 (242)
T ss_dssp TSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTTS----CSCHHHH----HHHHHHHTCTTTTTSSTTGGGCEES-TTSB
T ss_pred ccHHHHHhheEEEccccccCCc-chhhheeccccc----ccchhhH----HHHHHHHHhhhhhccCccccccccc-CCCC
Confidence 467889999999999986 999999765321 2233332 23333333 3345567776 3456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.|||||||||+|||||+.+|+||+||||||+||+.++.++++.|+++++ |+|+|++||+++ .+ ..||||++|++|++
T Consensus 139 ~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~-~~-~~~D~i~vl~~G~i 215 (242)
T d1mv5a_ 139 KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GRTTLVIAHRLS-TI-VDADKIYFIEKGQI 215 (242)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT-TSEEEEECCSHH-HH-HHCSEEEEEETTEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HH-HhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999999974 899999999986 45 45999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
++.|+++++.+
T Consensus 216 v~~G~~~eLl~ 226 (242)
T d1mv5a_ 216 TGSGKHNELVA 226 (242)
T ss_dssp CCCSCHHHHHH
T ss_pred EEECCHHHHHh
Confidence 99999999875
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.7e-52 Score=407.51 Aligned_cols=220 Identities=24% Similarity=0.429 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++||+|+|+.. .++.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++..
T Consensus 11 ~I~~~nvsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~ 80 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNR----------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQ 80 (251)
T ss_dssp CEEEEEEEECCTTS----------TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG
T ss_pred eEEEEEEEEECCCC----------CCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecch
Confidence 59999999998621 14579999999999999999999999999999999999999999999999999854
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHH-----HHHHHHHcCCCcccccccCCCCCCcc
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKC-----AEAVMTELGLSECKNSLIGGPLTRGV 188 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~vg~~~~~~L 188 (508)
.+++.++||+|++.+|+ .||+||+.++... .....+..+. ..+.++ +|.+..++.++ ..+..|
T Consensus 81 ~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~----~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~-~~~~~L 152 (251)
T d1jj7a_ 81 YEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQ----KPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVD-EAGSQL 152 (251)
T ss_dssp BCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCSS----CCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCC-SSCSSS
T ss_pred hhhHHHHHHhhhccccccccC-cchhhhhhhhhcc----cchHHHHHHHHHHHHHHHHHH--hccccchhhHh-ccCccC
Confidence 46788999999999986 5999999886322 1222222111 122233 45556677776 456789
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 189 SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 189 SGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
||||||||+|||||+.+|+||+||||||+||+.++.++++.|+++.++ |+|+|++||+++ .+ +.||||++|++|+++
T Consensus 153 SGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~-~~-~~aDrI~vl~~G~iv 230 (251)
T d1jj7a_ 153 SGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS-LV-EQADHILFLEGGAIR 230 (251)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH-HH-HTCSEEEEEETTEEE
T ss_pred ChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH-HH-HhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998764 899999999986 45 569999999999999
Q ss_pred EEcChhhHHH
Q 010509 268 YSGEASGAMN 277 (508)
Q Consensus 268 ~~G~~~~~~~ 277 (508)
+.|+++++++
T Consensus 231 ~~Gt~~eLl~ 240 (251)
T d1jj7a_ 231 EGGTHQQLME 240 (251)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHHh
Confidence 9999999865
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.2e-51 Score=401.18 Aligned_cols=216 Identities=23% Similarity=0.378 Sum_probs=183.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++||+|+|+. .++.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 13 ~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~ 81 (253)
T d3b60a1 13 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLRE 81 (253)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTT
T ss_pred EEEEEEEEEEeCC-----------CCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccch
Confidence 5999999999762 13579999999999999999999999999999999999999999999999999864
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CcccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGL-------SECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~ 186 (508)
.+++.++||+|++.+++. |+++|+.++.. ...++++ ++++++..++ .+-.++.++ ..+.
T Consensus 82 ~~~~~~r~~i~~v~Q~~~l~~~-ti~~n~~~~~~----~~~~~~~----i~~a~~~~~l~~~i~~l~~gl~t~~~-~~~~ 151 (253)
T d3b60a1 82 YTLASLRNQVALVSQNVHLFND-TVANNIAYART----EEYSREQ----IEEAARMAYAMDFINKMDNGLDTIIG-ENGV 151 (253)
T ss_dssp BCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT----SCCCHHH----HHHHHHTTTCHHHHHHSTTGGGSBCC-TTSC
T ss_pred hhhhhhhheEEEEeeccccCCc-chhhhhhhcCc----ccCCHHH----HHHHHHHHhHHHHHHhccccchhhhc-CCCC
Confidence 467789999999998864 99999987521 2233333 3334444333 233567776 4567
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+|||||||||+|||||+.+|+||+||||||+||+.++..+++.|+++.+ ++|+|++||+++ .+ +.||||++|++|+|
T Consensus 152 ~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~-~~-~~~D~v~vl~~G~I 228 (253)
T d3b60a1 152 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS-TI-EQADEIVVVEDGII 228 (253)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG-GT-TTCSEEEEEETTEE
T ss_pred CcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH-HH-HhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999975 899999999996 34 67999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
++.|+++++++
T Consensus 229 v~~G~~~eLl~ 239 (253)
T d3b60a1 229 VERGTHSELLA 239 (253)
T ss_dssp EEEECHHHHHH
T ss_pred EEECCHHHHHh
Confidence 99999999875
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=8.8e-51 Score=398.73 Aligned_cols=215 Identities=26% Similarity=0.405 Sum_probs=185.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++||+|+|+. ..+.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 16 ~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~ 84 (255)
T d2hyda1 16 RIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKD 84 (255)
T ss_dssp CEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGG
T ss_pred EEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEccc
Confidence 5999999999762 13579999999999999999999999999999999999999999999999999854
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CcccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGL-------SECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~ 186 (508)
.+|+.++||+|++.+++ .||+||+.++. + ..+++ .+.++++..++ .+..|+.++ +.+.
T Consensus 85 ~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~----~-~~~~~----~~~~al~~~~l~~~i~~lp~gl~t~i~-~~g~ 153 (255)
T d2hyda1 85 FLTGSLRNQIGLVQQDNILFS-DTVKENILLGR----P-TATDE----EVVEAAKMANAHDFIMNLPQGYDTEVG-ERGV 153 (255)
T ss_dssp SCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGC----S-SCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCC-GGGT
T ss_pred CCHHHhhheeeeeeccccCCC-CCHHHHHhccC----c-CCCHH----HHHHHHHHhCCHHHHHhccccccchhc-CCCC
Confidence 56789999999999886 59999998752 1 22333 33445555554 344577776 3456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||||+.+|+||+||||||+||+.++..+++.|+++.+ ++|+|++||+++ .+ ..||||++|++|++
T Consensus 154 ~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~-~~-~~~D~ii~l~~G~i 230 (255)
T d2hyda1 154 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLS-TI-THADKIVVIENGHI 230 (255)
T ss_dssp TSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGG-GT-TTCSEEEEEETTEE
T ss_pred CcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HH-HhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999999875 799999999997 34 67999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
+..|+++++.+
T Consensus 231 v~~G~~~eLl~ 241 (255)
T d2hyda1 231 VETGTHRELIA 241 (255)
T ss_dssp EEEECHHHHHH
T ss_pred EEECCHHHHHh
Confidence 99999999865
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.3e-48 Score=373.19 Aligned_cols=208 Identities=27% Similarity=0.433 Sum_probs=181.9
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
+.|+++|+++ +.+|+||||+|++||++||+||||||||||+|+|+|+. +.+|+|.++|+++.
T Consensus 2 ~il~~~dv~~-----------------~~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~ 63 (231)
T d1l7vc_ 2 IVMQLQDVAE-----------------STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLE 63 (231)
T ss_dssp EEEEEEEECC-----------------TTTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGG
T ss_pred eEEEEECccc-----------------CceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECC
Confidence 5688899853 24699999999999999999999999999999999975 58999999999874
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
. ..+...+|++|+.......++++++.+...- +.+.++++++++.+++.+..++.+. .|||||
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~-----~LSgG~ 130 (231)
T d1l7vc_ 64 AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD--------KTRTELLNDVAGALALDDKLGRSTN-----QLSGGE 130 (231)
T ss_dssp GSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSC--------TTCHHHHHHHHHHTTCTTTTTSBGG-----GCCHHH
T ss_pred cCCHHHHHhhceeeeccccCCccccHHHHhhhccch--------hhHHHHHHHHHHhcCCHhHhCcChh-----hcCHHH
Confidence 3 3455789999998776678999998865321 1234567889999999998887764 899999
Q ss_pred HHHHHHHHHHhh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 193 RKRVSIGQEILI-------NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 193 rqRv~Ia~aL~~-------~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
||||+||++|++ +|+||+|||||+|||+.++..+.+++++++++|+|||++|||++ .+.++|||+++|++|+
T Consensus 131 ~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~~G~ 209 (231)
T d1l7vc_ 131 WQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGK 209 (231)
T ss_dssp HHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEETTE
T ss_pred HHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEECCE
Confidence 999999999997 77999999999999999999999999999989999999999987 5789999999999999
Q ss_pred EEEEcChhhHH
Q 010509 266 PLYSGEASGAM 276 (508)
Q Consensus 266 iv~~G~~~~~~ 276 (508)
+++.|+++++.
T Consensus 210 iv~~G~~~ev~ 220 (231)
T d1l7vc_ 210 MLASGRREEVL 220 (231)
T ss_dssp ECCCSBHHHHS
T ss_pred EEEECCHHHHh
Confidence 99999999874
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.1e-46 Score=370.86 Aligned_cols=196 Identities=27% Similarity=0.396 Sum_probs=162.3
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHH
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETM 142 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l 142 (508)
+++||+||||+|++||++||+||||||||||+++|+|+++|++|+|.++| +++|++|++.+++. ||+||+
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g---------~i~~v~Q~~~l~~~-tv~eni 117 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG---------RVSFCSQFSWIMPG-TIKENI 117 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS---------CEEEECSSCCCCSE-EHHHHH
T ss_pred CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC---------EEEEEeccccccCc-eeeccc
Confidence 47899999999999999999999999999999999999999999999987 38999999999885 999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHH---HHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 010509 143 VFTALLQLPNSFTEKEKIKCAEA---VMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLD 219 (508)
Q Consensus 143 ~~~~~l~~~~~~~~~~~~~~v~~---~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD 219 (508)
.++.. ......++..+. ......+.+..++.++ ....+|||||||||+|||||+.+|+||+|||||++||
T Consensus 118 ~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~-~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD 190 (281)
T d1r0wa_ 118 IFGVS------YDEYRYKSVVKACQLQQDITKFAEQDNTVLG-EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLD 190 (281)
T ss_dssp TTTSC------CCHHHHHHHHHHTTCHHHHTTSTTGGGCEEC-TTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSC
T ss_pred ccccc------ccchHHHHHHHHHHhHHHHHhchhhhhhhhh-hhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCC
Confidence 87531 222222221111 1223345555666665 4456899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHHH
Q 010509 220 STIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMN 277 (508)
Q Consensus 220 ~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~ 277 (508)
+.++.++++.+.+...+|+|+|++||+++ .+ +.||||++|++|++++.|+++++.+
T Consensus 191 ~~~~~~i~~~~~~~~~~~~tvi~itH~~~-~l-~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 191 VFTEEQVFESCVCKLMANKTRILVTSKME-HL-RKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp HHHHHHHHHHCCCCCTTTSEEEEECSCHH-HH-HTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEechHH-HH-HhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999865444456899999999985 34 6799999999999999999999864
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=6.1e-45 Score=345.58 Aligned_cols=195 Identities=23% Similarity=0.396 Sum_probs=166.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++||++.|+ +++|+||||++++||+++|+||||||||||+|+|+|+++|++|+|.+||+++.+
T Consensus 2 ~lev~~ls~~y~--------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~ 67 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK 67 (200)
T ss_dssp EEEEEEEEEESS--------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG
T ss_pred eEEEEEEEEEeC--------------CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH
Confidence 489999999864 469999999999999999999999999999999999999999999999999864
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVS 197 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 197 (508)
.+..++|+||+..+++.+|++|++.+.+.++.. ..++ +.+.+.++.+++.+.. ++++ +|||||||||+
T Consensus 68 -~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~-~~~~-----~LSgG~~qrv~ 135 (200)
T d1sgwa_ 68 -VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVNK----NEIMDALESVEVLDLK-KKLG-----ELSQGTIRRVQ 135 (200)
T ss_dssp -GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCCH----HHHHHHHHHTTCCCTT-SBGG-----GSCHHHHHHHH
T ss_pred -hcCcEEEEeecccCCCCcCHHHHHHHHHHhcCC-ccCH----HHHHHHHHHcCCcccc-cccC-----cCCCcHHHHHH
Confidence 567899999999999999999999988776532 2232 3356778888886643 3443 89999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 198 IGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 198 Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
||++|+.+|++++|||||+|||+.++.++++.|+++.++ |.+||.++|+. .+||++.+|++
T Consensus 136 ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l-----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 136 LASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-----SYCDVNENLHK 197 (200)
T ss_dssp HHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-----TTSSEEEEGGG
T ss_pred HHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh-----hhcchhhheee
Confidence 999999999999999999999999999999999998765 55555555554 46999998864
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.63 E-value=1.4e-17 Score=151.10 Aligned_cols=155 Identities=14% Similarity=0.099 Sum_probs=101.5
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecC--CC--CCCCCCHHHHHHHHHHhcCCCCCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQE--DV--LSPYLTVTETMVFTALLQLPNSFT 155 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~--~~--l~~~lTv~E~l~~~~~l~~~~~~~ 155 (508)
++|.||||||||||+++|+|.+++..|.+...+.+....- ++.++..+. +. .....+..+ ....
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~- 70 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETK-KRTGFRIITTEGKKKIFSSKFFTS----------KKLV- 70 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC-------CCEEEEEETTCCEEEEEETTCCC----------SSEE-
T ss_pred EEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHH-HhhhhhhhhhhHHHHHHhhhhhhh----------hhhh-
Confidence 7899999999999999999999999999999887643211 122222111 00 000000000 0000
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc
Q 010509 156 EKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN 235 (508)
Q Consensus 156 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~ 235 (508)
+..+. + .....+|+|+++|.++++++..+|+++++|||... ......+.+.|.++.+
T Consensus 71 ------------~~~~~----~-----~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~--~~~~~~~~~~l~~~l~ 127 (178)
T d1ye8a1 71 ------------GSYGV----N-----VQYFEELAIPILERAYREAKKDRRKVIIIDEIGKM--ELFSKKFRDLVRQIMH 127 (178)
T ss_dssp ------------TTEEE----C-----HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTT--GGGCHHHHHHHHHHHT
T ss_pred ------------hhhhc----C-----cchhhhhhhhhHHHHHHHHHhcCCCceeecCCCcc--chhhHHHHHHHHHHhc
Confidence 00000 0 01125799999999999999999999999998543 3344566667766554
Q ss_pred -CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 236 -GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 236 -~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
.+.++|+++|+.. ....+|++..+.+|+++.-++
T Consensus 128 ~~~~~il~~~h~~~--~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 128 DPNVNVVATIPIRD--VHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp CTTSEEEEECCSSC--CSHHHHHHHTCTTCEEEECCT
T ss_pred cCCCEEEEEEccHH--HHHhhceEEEEeCCEEEEECC
Confidence 5899999999965 456789999999999986543
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.23 E-value=2.7e-10 Score=111.27 Aligned_cols=77 Identities=19% Similarity=0.228 Sum_probs=64.9
Q ss_pred CCccCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEE
Q 010509 185 TRGVSGGERKRVSIGQEI----LINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLL 260 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL----~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~l 260 (508)
...+|+|||+...++..+ ..+|+++++|||-++|||..+..+.+.|++.++ +.-||+|||.|. +.+.+|+++.
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~~ 293 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLHG 293 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhcccEEE
Confidence 357899999998887664 346789999999999999999999999999875 578999999986 5578899966
Q ss_pred --EeCC
Q 010509 261 --LSEG 264 (508)
Q Consensus 261 --L~~G 264 (508)
+.+|
T Consensus 294 v~~~~g 299 (308)
T d1e69a_ 294 VTMVNG 299 (308)
T ss_dssp EEESSS
T ss_pred EEEeCC
Confidence 4566
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.90 E-value=1.6e-09 Score=109.60 Aligned_cols=74 Identities=18% Similarity=0.244 Sum_probs=63.8
Q ss_pred CccCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 186 RGVSGGERKRVSIGQEI----LINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL----~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
..+|||||.++++|.-+ ..++++++||||+++||+..+..+.+.|++++..+.-+|++||+|. +...+|+.+.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~--~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT--MFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHH--HHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHH--HHHhcccEEEE
Confidence 56899999998887554 3567899999999999999999999999998766677999999984 67889998765
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.17 E-value=3.5e-06 Score=78.78 Aligned_cols=55 Identities=20% Similarity=0.163 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHcCCCEEEEEecCcc
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILS-ILLKLANGGRTIVMTIHQPS 248 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tii~s~H~~~ 248 (508)
+|+.-....+++..++++||+.+|=|+.....+.. .++.|.+.+..++++||..+
T Consensus 103 ~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~e 158 (224)
T d1ewqa2 103 EEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFE 158 (224)
T ss_dssp HHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHH
T ss_pred HHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechh
Confidence 33333333445667999999999999988877644 44556777889999999853
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.03 E-value=5.7e-06 Score=77.79 Aligned_cols=47 Identities=19% Similarity=0.106 Sum_probs=36.9
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHcC-CCEEEEEecCcc
Q 010509 202 ILINPSLLFLDEPTSGLDSTIAQQILS-ILLKLANG-GRTIVMTIHQPS 248 (508)
Q Consensus 202 L~~~P~illLDEPtsgLD~~~~~~i~~-~L~~l~~~-g~tii~s~H~~~ 248 (508)
-+++..++++||+.+|=|+.....+.. .++.+..+ +..++++||...
T Consensus 117 ~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 117 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred hcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHH
Confidence 345567999999999999999988865 46667654 578999999754
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.68 E-value=5.6e-05 Score=71.58 Aligned_cols=34 Identities=24% Similarity=0.252 Sum_probs=27.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhc
Q 010509 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGG 99 (508)
Q Consensus 66 iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g 99 (508)
-|+++.+=+.+|+++.|.|++|+|||||+.-|+-
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3555544479999999999999999999887774
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.50 E-value=3.5e-06 Score=74.74 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=28.7
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhc
Q 010509 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGG 99 (508)
Q Consensus 67 L~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g 99 (508)
.++.++++.+| +++|+|||||||||+|++|.-
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 57788888887 999999999999999999974
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.32 E-value=5.6e-05 Score=70.21 Aligned_cols=34 Identities=32% Similarity=0.493 Sum_probs=26.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEE
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRLGRINGRIT 109 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~ 109 (508)
+|+..+++|+||+|||||+|.|.|......|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 5889999999999999999999997766667764
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.24 E-value=8.2e-05 Score=64.68 Aligned_cols=27 Identities=37% Similarity=0.608 Sum_probs=24.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
.|++++|.||+||||||+.+.|+..++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999998763
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.21 E-value=5.5e-05 Score=67.31 Aligned_cols=26 Identities=35% Similarity=0.691 Sum_probs=23.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
|.++.|+||||||||||.+.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999987654
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.21 E-value=7.7e-05 Score=64.47 Aligned_cols=23 Identities=52% Similarity=0.540 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++|.|++|||||||++.|+..+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l 26 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPAL 26 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998653
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.19 E-value=0.00098 Score=62.34 Aligned_cols=153 Identities=20% Similarity=0.187 Sum_probs=77.5
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHH
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVF 144 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~ 144 (508)
.++.+ +.||+++.|.|++|+|||||+-.|+-... +|.=. .|.... ....+-|+.-++.. -.+.+-+.
T Consensus 21 ~li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~ia--~g~~~-~~~~~~--~~~~vl~~~~E~~~---~~~~~Rl~- 87 (274)
T d1nlfa_ 21 YVLPN----MVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGEL--PTGPVIYLPAEDPP---TAIHHRLH- 87 (274)
T ss_dssp EEETT----EETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCC--CCCCEEEEESSSCH---HHHHHHHH-
T ss_pred HHhCC----ccCCcEEEEEeCCCCCHHHHHHHHHHHHH--cCCCc-cccccc--CCCceEEEeccchH---HHHHHHHH-
Confidence 45555 34699999999999999999877764320 11000 111111 12345666554320 01122111
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC-----CCC
Q 010509 145 TALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTS-----GLD 219 (508)
Q Consensus 145 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPts-----gLD 219 (508)
+.. ...+.... ....+.+.+.+..+.. ...-..+.+.-...-..+|+++++|--++ --|
T Consensus 88 -~~~---~~~~~~~~----~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~lvviD~l~~~~~~~~~~ 151 (274)
T d1nlfa_ 88 -ALG---AHLSAEER----QAVADGLLIQPLIGSL--------PNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENA 151 (274)
T ss_dssp -HHH---TTSCHHHH----HHHHHHEEECCCTTSC--------CCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTC
T ss_pred -HHh---hccChhhh----hcccccceeccccCcc--------chhHHHHHHHHHHHhccCccEEecCchhhhccccccc
Confidence 111 11222221 1222333332222211 11111122222233457999999996542 126
Q ss_pred HHHHHHHHHHHHHHHcC-CCEEEEEecC
Q 010509 220 STIAQQILSILLKLANG-GRTIVMTIHQ 246 (508)
Q Consensus 220 ~~~~~~i~~~L~~l~~~-g~tii~s~H~ 246 (508)
.....++++.|+++++. |.+||++.|.
T Consensus 152 ~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 152 SGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred hhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 66777888888888764 8899998774
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.17 E-value=0.0085 Score=53.58 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=37.6
Q ss_pred hCCCEEEEeCCCCCC----CHHHHHHHH-HHHHHHHcCCCEEEEEecCcch--------HHHhhccEEEEEe
Q 010509 204 INPSLLFLDEPTSGL----DSTIAQQIL-SILLKLANGGRTIVMTIHQPSN--------MLYYMFHKVLLLS 262 (508)
Q Consensus 204 ~~P~illLDEPtsgL----D~~~~~~i~-~~L~~l~~~g~tii~s~H~~~~--------~~~~~~D~v~lL~ 262 (508)
.+|+++++|--+.=. +.....+.+ ..++.+++.+.|++++.|.... .....+|.++.+.
T Consensus 124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred hccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeecccccccccccCcceeeeccEEEEEE
Confidence 479999999765432 333333344 3344445569999999886532 3456789888875
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.16 E-value=3.1e-05 Score=67.55 Aligned_cols=34 Identities=26% Similarity=0.269 Sum_probs=26.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCcccEEEECC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRLGRINGRITYNG 112 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G 112 (508)
.+.|.||+|+|||||++.++..+....+.+.+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~ 36 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY 36 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4789999999999999999997744444444433
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.10 E-value=0.00012 Score=63.42 Aligned_cols=27 Identities=22% Similarity=0.509 Sum_probs=24.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++.++.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999999865
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.09 E-value=0.002 Score=58.90 Aligned_cols=152 Identities=14% Similarity=0.120 Sum_probs=81.2
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC
Q 010509 72 GMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP 151 (508)
Q Consensus 72 ~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~ 151 (508)
+=+++|+++.|.|++|+|||||..-++-..... ...+.|+.-+ .+..+.........
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~---------------~~~~~~is~e------~~~~~~~~~~~~~~-- 77 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVENACAN---------------KERAILFAYE------ESRAQLLRNAYSWG-- 77 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT---------------TCCEEEEESS------SCHHHHHHHHHTTS--
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHh---------------ccccceeecc------CCHHHHHHHHHHcC--
Confidence 458999999999999999999987776532100 1123444322 24444433332221
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHH-HhhCCCEEEEeCCCC---CCCHHHHHHHH
Q 010509 152 NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQE-ILINPSLLFLDEPTS---GLDSTIAQQIL 227 (508)
Q Consensus 152 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~a-L~~~P~illLDEPts---gLD~~~~~~i~ 227 (508)
....+ +...+.....+.. .......+. .-.|..+ --.+|++++.|--+. +.+.......+
T Consensus 78 --~~~~~--------~~~~~~~~~~~~~-----~~~~~~~~~-~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~ 141 (242)
T d1tf7a2 78 --MDFEE--------MERQNLLKIVCAY-----PESAGLEDH-LQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFV 141 (242)
T ss_dssp --CCHHH--------HHHTTSEEECCCC-----GGGSCHHHH-HHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHH
T ss_pred --CChHH--------HhhcCceEEEEee-----cchhhHHHH-HHHHHHHHHhcCCceeeeecchhhhcCCCHHHHHHHH
Confidence 11111 1112222111111 112222221 1122222 224789999997544 44666666666
Q ss_pred HHHHHHH-cCCCEEEEEecCc---------chHHHhhccEEEEEe
Q 010509 228 SILLKLA-NGGRTIVMTIHQP---------SNMLYYMFHKVLLLS 262 (508)
Q Consensus 228 ~~L~~l~-~~g~tii~s~H~~---------~~~~~~~~D~v~lL~ 262 (508)
..|.+++ +.+.+++++.|.. ...+...+|-++.|.
T Consensus 142 ~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 142 IGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp HHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred HHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence 6666655 4689999888742 123557889998875
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.97 E-value=6.6e-05 Score=69.96 Aligned_cols=34 Identities=32% Similarity=0.524 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEE
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRLGRINGRIT 109 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~ 109 (508)
+|...+++|+||+|||||+|.|.|......|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 4788899999999999999999997765667775
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.94 E-value=0.00021 Score=61.85 Aligned_cols=27 Identities=26% Similarity=0.301 Sum_probs=24.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|.++.|.|++||||||+-+.|+-++
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999765
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.93 E-value=0.00092 Score=62.60 Aligned_cols=22 Identities=41% Similarity=0.780 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+.+.||+|+|||+|.++|++..
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 5799999999999999999754
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.91 E-value=0.00012 Score=63.93 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.+++|+|++|||||||++.|...+
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L 25 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAA 25 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH
Confidence 378999999999999999888765
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.82 E-value=0.00026 Score=61.37 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
..++|.||+|||||||.+.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357999999999999999999875
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.80 E-value=0.00032 Score=60.66 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=23.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|-.++|.||+||||||+.+.|+-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999999765
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.79 E-value=0.0028 Score=59.53 Aligned_cols=25 Identities=40% Similarity=0.652 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
..-+.+.||+|+|||+|.+.|+...
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHHHc
Confidence 3446799999999999999999754
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.79 E-value=0.00032 Score=63.98 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+|.++.|+||||+|||||.+.|.-..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999999997654
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.72 E-value=0.00035 Score=69.15 Aligned_cols=27 Identities=22% Similarity=0.550 Sum_probs=22.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHh
Q 010509 72 GMVKPGEMLAMLGPSGCGKTTLLTALG 98 (508)
Q Consensus 72 ~~v~~Ge~~ailG~nGsGKSTLL~~L~ 98 (508)
+.+.++.+++|+|||||||||+|.+|+
T Consensus 20 i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 20 VGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 344555699999999999999999985
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.71 E-value=0.00041 Score=58.78 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=23.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNG 112 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G 112 (508)
+++.|.|++|||||||.+.|.... .|...++.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~ 34 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINR 34 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC---CCCEEech
Confidence 478899999999999999875422 24555543
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.69 E-value=0.00036 Score=60.20 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=23.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
..++.|.|++||||||+.+.|+..++
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46889999999999999999999874
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.66 E-value=0.00072 Score=59.43 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-+||+|++|+|||||+|.|.|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37999999999999999999853
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.62 E-value=0.0005 Score=58.88 Aligned_cols=24 Identities=33% Similarity=0.657 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++.|.||+||||||+.+.|+..+
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999765
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.59 E-value=0.00046 Score=61.48 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||+|.|.|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 48999999999999999999864
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.57 E-value=0.00032 Score=60.99 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=22.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
.+++|.|++||||||+.+.|+-++.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999987653
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.57 E-value=0.0005 Score=59.13 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|+||+||||||+.+.|+-.+
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999998765
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.56 E-value=0.0023 Score=60.29 Aligned_cols=27 Identities=37% Similarity=0.736 Sum_probs=22.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++..-+.|-||+|+|||+|.+++++..
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 344457899999999999999999876
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.43 E-value=0.00071 Score=57.14 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.+.|+||+||||||+-+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36788999999999999999865
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.42 E-value=0.00068 Score=59.61 Aligned_cols=23 Identities=43% Similarity=0.512 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++||-||+|||||||.+.|+-.+
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l 46 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTL 46 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.39 E-value=0.00076 Score=61.58 Aligned_cols=21 Identities=38% Similarity=0.735 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 010509 79 MLAMLGPSGCGKTTLLTALGG 99 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g 99 (508)
+++|+|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 689999999999999999975
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.37 E-value=0.001 Score=58.56 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=26.0
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 010509 72 GMVKPGEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 72 ~~v~~Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
+=+++|+++.|.||+|+|||||..-++..
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 46899999999999999999998888753
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.36 E-value=0.00053 Score=60.46 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
+||+|++++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 699999999999999999875
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.35 E-value=0.00056 Score=60.23 Aligned_cols=26 Identities=42% Similarity=0.466 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.|-++.|.|++||||||+-+.|+-++
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999765
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.31 E-value=0.00079 Score=58.87 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|+|++|+|||||+|.|.|..
T Consensus 3 I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999964
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.27 E-value=0.001 Score=59.02 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
..+++|+||+||||||+.+.|+-.+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3588999999999999999998654
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.27 E-value=0.001 Score=57.86 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||+|.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999854
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.24 E-value=0.001 Score=59.18 Aligned_cols=22 Identities=45% Similarity=0.712 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|+||||||||||++.|+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999997654
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.24 E-value=0.0012 Score=57.48 Aligned_cols=23 Identities=39% Similarity=0.654 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++|+|.+|+|||||+|.|.|..
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999863
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.21 E-value=0.0034 Score=57.53 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=31.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchH
Q 010509 205 NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNM 250 (508)
Q Consensus 205 ~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~ 250 (508)
+.+++++||.-. |....+..+.+.+.+-. ....+|+++++++..
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCSS
T ss_pred CceEEEeccccc-cccccchhhhccccccc-ccccceeeeccccch
Confidence 567999999854 77777777777665432 245678899987643
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.20 E-value=0.00098 Score=59.45 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|||||||+|.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.19 E-value=0.001 Score=56.10 Aligned_cols=22 Identities=45% Similarity=0.557 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|+|++|+|||||++.|.+..
T Consensus 3 I~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5799999999999999999853
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.15 E-value=0.00086 Score=58.10 Aligned_cols=23 Identities=43% Similarity=0.527 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|||||||++.|.+-.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999998853
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.14 E-value=0.0014 Score=58.11 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~ 100 (508)
..+.|+||||+|||||++.|...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998854
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.11 E-value=0.0012 Score=55.80 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++|+|++|+|||||++.+.+-
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999999874
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.10 E-value=0.0015 Score=57.15 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||+|.|.|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999864
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.10 E-value=0.00091 Score=58.64 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+||+|++|+|||||+|.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999853
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.09 E-value=0.0015 Score=58.09 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-.++.|+||+||||||+.+.|+..+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4479999999999999999999866
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.07 E-value=0.0016 Score=55.55 Aligned_cols=23 Identities=39% Similarity=0.660 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++++|++|+|||||+|.|.|..
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.06 E-value=0.0014 Score=58.51 Aligned_cols=21 Identities=48% Similarity=0.727 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++|+||||||||||.+.|+-.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999998764
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.03 E-value=0.0014 Score=55.78 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|+|++|+|||||++.+.+..
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998864
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.02 E-value=0.0014 Score=58.24 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=24.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+.+.++.|+||+||||||+.+.|+-.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999999765
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.02 E-value=0.013 Score=58.42 Aligned_cols=45 Identities=18% Similarity=0.303 Sum_probs=34.0
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcc
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPS 248 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~ 248 (508)
++..+|=.+|++++..|.. |..++...+ +.+..|+.|+.|.|-.+
T Consensus 219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~ 263 (401)
T d1p9ra_ 219 GLRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT 263 (401)
T ss_dssp HHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS
T ss_pred HHHHHHhhcCCEEEecCcC---ChHHHHHHH----HHHhcCCeEEEEeccCc
Confidence 3455677899999999997 556555544 44667999999999754
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.97 E-value=0.0017 Score=56.26 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+.|+|++||||||+.+.||..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5788999999999999999875
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.94 E-value=0.002 Score=56.94 Aligned_cols=27 Identities=33% Similarity=0.532 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|--+.|+||+||||||.-+.|+-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 356678899999999999999999643
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.93 E-value=0.16 Score=47.28 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhc
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGG 99 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g 99 (508)
+..+++|.|..|.|||||.+.+..
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998864
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.91 E-value=0.0019 Score=57.06 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++.|+||+||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999999754
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.87 E-value=0.0033 Score=53.88 Aligned_cols=22 Identities=45% Similarity=0.659 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|+|++|+|||||++.|.+..
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 6799999999999999999854
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.86 E-value=0.002 Score=57.96 Aligned_cols=45 Identities=13% Similarity=0.310 Sum_probs=30.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLS 133 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~ 133 (508)
++||-|++||||||+-+.|+-.++... + ......+..+.+|+.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~---------~-~~~~~~~~vi~~D~yy~ 48 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNE---------V-DYRQKQVVILSQDSFYR 48 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGG---------S-CGGGCSEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchhc---------c-ccCCCceEEEecccccc
Confidence 689999999999999999987653210 0 11123467778877643
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.85 E-value=0.002 Score=56.19 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+.|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998765
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.83 E-value=0.0018 Score=57.24 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.+.|+||+||||||+.+.|+-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999998765
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.79 E-value=0.0011 Score=57.64 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++++|||||+|.|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998864
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.77 E-value=0.0034 Score=58.79 Aligned_cols=22 Identities=23% Similarity=0.561 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|+|++|+|||||+|.|.|..
T Consensus 35 I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 35 ILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 8899999999999999999974
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.77 E-value=0.0021 Score=59.40 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=25.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNG 112 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G 112 (508)
...+.+.||+|||||||.+.|++.+.. +-+.+|+
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhc--ceEEEec
Confidence 345889999999999999999996532 2345554
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.75 E-value=0.0023 Score=55.58 Aligned_cols=22 Identities=41% Similarity=0.693 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+.|+|++||||||+-+.||-.+
T Consensus 5 Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999765
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.75 E-value=0.00074 Score=61.56 Aligned_cols=42 Identities=26% Similarity=0.297 Sum_probs=31.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCCCc--ccEEEECCEeCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLGRI--NGRITYNGKPFS 116 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~--~G~I~~~G~~~~ 116 (508)
++|.++-+.|.|||||||+.+.|.-.+... .-.+.++|..+.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 65 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHH
Confidence 578899999999999999999998654211 134677776653
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.74 E-value=0.0024 Score=55.38 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++.|.|++||||||+.+.|+.++
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 367788999999999999999876
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.67 E-value=0.0027 Score=56.29 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++++|.+|||||||.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999654
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.67 E-value=0.0028 Score=55.64 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhc
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGG 99 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g 99 (508)
++-+++.++|++||||||+.+-++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999998853
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.64 E-value=0.0027 Score=54.89 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+.++|++||||||+-+.|+..+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4577999999999999999876
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.61 E-value=0.0026 Score=55.87 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+||+|+..||||||+|.|.|..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999999753
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.61 E-value=0.0021 Score=62.46 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=25.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCCCcc
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLGRIN 105 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~ 105 (508)
+.|.-+.|.|+.||||||||++|.+.+++..
T Consensus 164 ~~~~nili~G~tgSGKTT~l~al~~~i~~~~ 194 (323)
T d1g6oa_ 164 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE 194 (323)
T ss_dssp HHTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred HhCCCEEEEeeccccchHHHHHHhhhccccc
Confidence 3445589999999999999999999886643
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.59 E-value=0.003 Score=56.90 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
+++|-||+||||||+-+.|+-.++
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998653
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.56 E-value=0.0032 Score=55.18 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.+.|+||+||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999765
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.51 E-value=0.0028 Score=56.61 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.|.+..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.48 E-value=0.0035 Score=56.06 Aligned_cols=30 Identities=40% Similarity=0.589 Sum_probs=25.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC---CcccEE
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRLG---RINGRI 108 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~~---~~~G~I 108 (508)
+++|.||+||||||+-+.|+..++ -.+|.+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL 37 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 37 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence 889999999999999999998763 335655
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.47 E-value=0.0031 Score=54.41 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|.+|||||||++.|.+..
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37799999999999999999864
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.45 E-value=0.00096 Score=56.98 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++|+|++|+|||||+|.|.|.
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999985
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.41 E-value=0.0036 Score=54.71 Aligned_cols=22 Identities=41% Similarity=0.720 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+.|+||+||||||+-+.|+..+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999765
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.39 E-value=0.004 Score=56.16 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=25.0
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhc
Q 010509 72 GMVKPGEMLAMLGPSGCGKTTLLTALGG 99 (508)
Q Consensus 72 ~~v~~Ge~~ailG~nGsGKSTLL~~L~g 99 (508)
+=+++|+++.|.||+|||||||.--++-
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 4589999999999999999999887764
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.36 E-value=0.0034 Score=54.75 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+.|+||+||||||..+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999998654
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=95.26 E-value=0.038 Score=51.84 Aligned_cols=29 Identities=34% Similarity=0.557 Sum_probs=26.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 010509 72 GMVKPGEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 72 ~~v~~Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
+=++.|.++-|-||+|||||||.-.++..
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~ 80 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQ 80 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHH
Confidence 67899999999999999999998777764
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.25 E-value=0.0044 Score=54.27 Aligned_cols=22 Identities=36% Similarity=0.717 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+.|+||+||||||+.+.|+-.+
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999764
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=95.22 E-value=0.0042 Score=53.36 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++++|++|+|||||++.+.+-
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 578999999999999988764
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.21 E-value=0.0045 Score=55.00 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.+.|+||+||||||+-+.|+-.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999765
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.11 E-value=0.0047 Score=54.39 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 010509 79 MLAMLGPSGCGKTTLLTALGG 99 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g 99 (508)
++||.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999964
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.11 E-value=0.0043 Score=54.79 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.-+++|-|+.||||||+++.|+..+
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998765
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.02 E-value=0.0058 Score=60.98 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=21.2
Q ss_pred EEEECCCCCcHHHHHHHHhcCCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
+||+|++|+|||||+|.|.|...
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEECCCCCCHHHHHHHHhCCCc
Confidence 79999999999999999999653
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.94 E-value=0.0074 Score=54.27 Aligned_cols=29 Identities=21% Similarity=0.294 Sum_probs=25.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 010509 72 GMVKPGEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 72 ~~v~~Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
+=+++|+++.|.|++|+|||||.--++-.
T Consensus 29 GGl~~G~l~~i~G~~G~GKT~~~l~~a~~ 57 (258)
T d2i1qa2 29 GGLESQSVTEFAGVFGSGKTQIMHQSCVN 57 (258)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 45999999999999999999998777653
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.92 E-value=0.0056 Score=59.49 Aligned_cols=26 Identities=38% Similarity=0.533 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
..-.+||.||+|||||||++.|+..+
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998543
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.89 E-value=0.0053 Score=53.03 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++++|++|+|||||++.+.+..
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999997753
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.88 E-value=0.0069 Score=55.44 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
.+.|.||+|+||||+.++|+....
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999998653
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.88 E-value=0.0079 Score=54.69 Aligned_cols=27 Identities=30% Similarity=0.509 Sum_probs=23.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHh
Q 010509 72 GMVKPGEMLAMLGPSGCGKTTLLTALG 98 (508)
Q Consensus 72 ~~v~~Ge~~ailG~nGsGKSTLL~~L~ 98 (508)
+=+++|+++.|.||+|||||||.--++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 358999999999999999999976554
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.85 E-value=0.0065 Score=55.13 Aligned_cols=22 Identities=50% Similarity=0.694 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+.|.||+|+|||||.++|+..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999754
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.84 E-value=0.0062 Score=52.57 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++|+|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 689999999999999998864
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.84 E-value=0.0062 Score=52.56 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++++|++|+|||||++.+.+-
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999988753
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.82 E-value=0.0065 Score=55.52 Aligned_cols=22 Identities=41% Similarity=0.675 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
++||+|+..||||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5899999999999999999874
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.77 E-value=0.007 Score=55.35 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.+..+.|.||+|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 56789999999999999999887543
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.76 E-value=0.005 Score=55.86 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
++.+++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999998763
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.73 E-value=0.0075 Score=54.50 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=24.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+.|-+++|-|+.||||||+.+.|+..+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999999998754
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.71 E-value=0.0063 Score=52.27 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++++|++|+|||||++.+.+-
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998874
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=94.65 E-value=0.0076 Score=54.83 Aligned_cols=24 Identities=38% Similarity=0.630 Sum_probs=21.0
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRLGR 103 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~~~ 103 (508)
+.+.||+|+||||+.++|+..+..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHhccCC
Confidence 678999999999999999986543
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.58 E-value=0.0078 Score=52.20 Aligned_cols=21 Identities=33% Similarity=0.684 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++++|++|+|||||++.+.+-
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987663
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.55 E-value=0.009 Score=53.46 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.|.+++|-|+.||||||+.+.|+..+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999998754
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.55 E-value=0.008 Score=51.45 Aligned_cols=20 Identities=15% Similarity=0.461 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 010509 80 LAMLGPSGCGKTTLLTALGG 99 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g 99 (508)
++++|++|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999997775
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.54 E-value=0.0095 Score=53.98 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=24.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhc
Q 010509 72 GMVKPGEMLAMLGPSGCGKTTLLTALGG 99 (508)
Q Consensus 72 ~~v~~Ge~~ailG~nGsGKSTLL~~L~g 99 (508)
+=+++|+++.|.||+|||||||.-.++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999999877764
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.51 E-value=0.01 Score=53.82 Aligned_cols=26 Identities=35% Similarity=0.623 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++.+++++||+|+||||.+-=||...
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999977777543
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.47 E-value=0.0092 Score=57.79 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
.-.++|.||+|||||||+..|...
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHH
Confidence 567999999999999999999864
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=94.40 E-value=0.0087 Score=54.50 Aligned_cols=22 Identities=45% Similarity=0.773 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+.+.||+|+||||+.+++++..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999754
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.39 E-value=0.01 Score=51.79 Aligned_cols=21 Identities=48% Similarity=0.610 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++|+|++|+|||||++.+.+-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999999864
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.37 E-value=0.0084 Score=51.35 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++++|++|+|||||++.+.+-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 679999999999999988764
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.37 E-value=0.0083 Score=57.55 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.-+.+.||+|+|||+|.|+||...
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhcc
Confidence 345689999999999999999864
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.36 E-value=0.011 Score=50.88 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++|+|.+|+|||||++-+.+-
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988763
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.35 E-value=0.019 Score=49.20 Aligned_cols=21 Identities=24% Similarity=0.532 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++++|++|+|||||++-+.+-
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 679999999999999977653
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.32 E-value=0.0088 Score=51.29 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++|+|++|+|||||++.+.+.
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999998753
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.28 E-value=0.01 Score=51.35 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++|+|++|+|||||++.+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 679999999999999987754
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.27 E-value=0.01 Score=53.56 Aligned_cols=22 Identities=41% Similarity=0.705 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+.+-||+|+|||||.++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6799999999999999999754
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.21 E-value=0.0096 Score=51.29 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++|+|.+|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999987763
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.21 E-value=0.012 Score=50.64 Aligned_cols=22 Identities=36% Similarity=0.688 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|+|++|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 6899999999999999998864
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.20 E-value=0.011 Score=52.78 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 010509 79 MLAMLGPSGCGKTTLLTALGG 99 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g 99 (508)
++||.|+.||||||+.+.+.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999963
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=94.18 E-value=0.011 Score=53.85 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
...+.|.||+|+||||+++.|+..+.
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHh
Confidence 34788999999999999999998764
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.17 E-value=0.028 Score=49.43 Aligned_cols=35 Identities=29% Similarity=0.303 Sum_probs=28.1
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
..+|.....+ .|.=+.|.|+||+|||||.-.|..+
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred ceEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4567666666 7888999999999999998877643
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.16 E-value=0.013 Score=50.57 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++++|++|+|||||++-+.+.
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999877653
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.14 E-value=0.01 Score=51.19 Aligned_cols=21 Identities=29% Similarity=0.597 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++|+|++|+|||||++.+.+-
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998864
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.07 E-value=0.012 Score=50.40 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++|+|++|+|||||++-+.+.
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998874
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.06 E-value=0.012 Score=51.36 Aligned_cols=21 Identities=38% Similarity=0.681 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++++|.+|+|||||++.+.+-
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988753
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.03 E-value=0.012 Score=56.57 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=32.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPY 135 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~ 135 (508)
++||-|++||||||+-+.|..++.... ....+..+.+|+.+.++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~-------------~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWP-------------EHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTST-------------TCCCEEEEEGGGGBCCH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhc-------------CCCceEEEeeeeeECCc
Confidence 889999999999999999987653210 01246778888877653
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=94.00 E-value=0.0078 Score=52.40 Aligned_cols=21 Identities=43% Similarity=0.581 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++++|++|+|||||++.+.+-
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 669999999999999998764
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.98 E-value=0.012 Score=50.29 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.97 E-value=0.013 Score=49.94 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++++|..|+|||||++.+.+-
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988753
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.95 E-value=0.017 Score=52.30 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
...+++++||+|+||||.+-=||.++
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34688999999999999988888654
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.95 E-value=0.012 Score=54.56 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-+.+.||+|+|||+|.++|+...
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhcc
Confidence 46799999999999999999753
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.94 E-value=0.025 Score=49.16 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++++|++|+|||||++.+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999977764
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.92 E-value=0.012 Score=50.19 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++|+|.+|+|||||++.+.+-
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999998863
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.86 E-value=0.015 Score=52.54 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=24.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
+|.+++|=|+-||||||+.+.|+-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 689999999999999999999998764
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.84 E-value=0.014 Score=50.67 Aligned_cols=21 Identities=33% Similarity=0.657 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++++|..|+|||||++.+.+-
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998863
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.76 E-value=0.015 Score=49.84 Aligned_cols=21 Identities=24% Similarity=0.556 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++|+|.+|+|||||++-+.+-
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 679999999999999998763
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.74 E-value=0.017 Score=49.94 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++++|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 6799999999999999998864
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.73 E-value=0.016 Score=51.90 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
++||.|+.||||||..+++..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 6899999999999999999743
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.70 E-value=0.042 Score=48.27 Aligned_cols=35 Identities=26% Similarity=0.255 Sum_probs=26.6
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
+.||..-. .-.|.=++|.|+||+|||||.-.|..+
T Consensus 3 ~~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 3 RSMHGVLV-DIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEEEEE-EETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred ceEEEEEE-EECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 45565444 446778999999999999998877654
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.70 E-value=0.013 Score=51.63 Aligned_cols=21 Identities=38% Similarity=0.667 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++|+|+.|+|||||++.+.+-
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 789999999999999987753
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.69 E-value=0.02 Score=49.47 Aligned_cols=29 Identities=31% Similarity=0.422 Sum_probs=26.0
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
.+||.++++-|+=|||||||.|.++.-++
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 46999999999999999999999987554
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.66 E-value=0.0086 Score=57.02 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++||-|+|||||||+.+.|...+
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~ 28 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIF 28 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 79999999999999999998754
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.63 E-value=0.016 Score=49.61 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++|+|.+|+|||||++.+.+-
T Consensus 6 ivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 589999999999999987753
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.60 E-value=0.014 Score=50.20 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 010509 80 LAMLGPSGCGKTTLLTALGG 99 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g 99 (508)
++++|..|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=93.57 E-value=0.011 Score=50.98 Aligned_cols=22 Identities=41% Similarity=0.469 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+.++|++|+|||||++.+.+-.
T Consensus 15 IvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5699999999999999998643
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.55 E-value=0.015 Score=50.34 Aligned_cols=21 Identities=38% Similarity=0.667 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++|+|++|+|||||++.+.+-
T Consensus 5 ivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 679999999999999988864
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.50 E-value=0.022 Score=51.73 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=21.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+-.+++++||+|+||||.+-=||-+.
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44589999999999999987777653
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.48 E-value=0.018 Score=51.89 Aligned_cols=22 Identities=36% Similarity=0.526 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+.+-||+|+||||+.++++..+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHH
Confidence 6789999999999999998754
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.41 E-value=0.012 Score=50.93 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=8.5
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++|+|.+|+|||||++.+.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987763
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=93.30 E-value=0.021 Score=50.46 Aligned_cols=22 Identities=45% Similarity=0.599 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+||+|.-.+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999854
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.26 E-value=0.019 Score=49.91 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999988764
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.26 E-value=0.022 Score=50.24 Aligned_cols=23 Identities=39% Similarity=0.723 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998755
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.25 E-value=0.018 Score=49.68 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++|+|.+|+|||||++-+.+-
T Consensus 9 v~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987763
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.17 E-value=0.021 Score=48.99 Aligned_cols=21 Identities=33% Similarity=0.645 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++++|++|+|||||++-+.+-
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998864
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=93.15 E-value=0.015 Score=53.26 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++.|.||+|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45667999999999999999765
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.13 E-value=0.021 Score=48.96 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++++|.+|+|||||++-+.+-
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 589999999999999998853
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.11 E-value=0.022 Score=51.59 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=17.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
...+++++||+|+||||.+-=||-+.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999987777543
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.10 E-value=0.013 Score=50.47 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=17.5
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++++|++|+|||||++.+.+-
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987653
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.09 E-value=0.022 Score=51.18 Aligned_cols=42 Identities=10% Similarity=0.240 Sum_probs=29.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcch
Q 010509 206 PSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSN 249 (508)
Q Consensus 206 P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~ 249 (508)
.+++++||. -.+....+..+++.|.+..+ ...++++++++..
T Consensus 100 ~kiiiiDe~-d~~~~~~~~~Ll~~le~~~~-~~~~~~~~~~~~~ 141 (227)
T d1sxjc2 100 FKLIILDEA-DAMTNAAQNALRRVIERYTK-NTRFCVLANYAHK 141 (227)
T ss_dssp CEEEEETTG-GGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGGG
T ss_pred eEEEEEecc-ccchhhHHHHHHHHhhhccc-ceeeccccCcHHH
Confidence 469999996 46777777878877776532 4556666666553
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.09 E-value=0.021 Score=53.16 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+.+.||+|+|||+|.++++...
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCCCchHHHHHHHHHh
Confidence 6788999999999999999864
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.06 E-value=0.027 Score=51.05 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.+++++||+|+||||.+-=||-+.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999887778654
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.03 E-value=0.022 Score=48.81 Aligned_cols=20 Identities=40% Similarity=0.677 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 010509 80 LAMLGPSGCGKTTLLTALGG 99 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g 99 (508)
++|+|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997755
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.93 E-value=0.024 Score=48.73 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++++|.+|+|||||++-+.+-
T Consensus 7 i~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 578999999999999988763
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=92.87 E-value=0.024 Score=48.64 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 010509 79 MLAMLGPSGCGKTTLLTALGG 99 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g 99 (508)
-++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998765
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=92.78 E-value=0.013 Score=56.43 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=23.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRLGR 103 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~~~ 103 (508)
.-+.|.||+|+|||||.|.+++++++
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 35789999999999999999998865
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.78 E-value=0.026 Score=49.25 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=21.8
Q ss_pred EEEECCCCCcHHHHHHHHhcC--CCCccc
Q 010509 80 LAMLGPSGCGKTTLLTALGGR--LGRING 106 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~--~~~~~G 106 (508)
+.|+|.+|+|||||++-+.-. ..|+-|
T Consensus 5 ivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 679999999999999998432 257777
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.74 E-value=0.029 Score=53.23 Aligned_cols=51 Identities=20% Similarity=0.343 Sum_probs=32.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHH
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVF 144 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~ 144 (508)
++||-|+.|||||||-+.|.-.+.... .....+..++.||.. +|-.|-..+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~~------------~~~~~v~~iS~DdfY---~t~~~r~~L 79 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEKY------------GGEKSIGYASIDDFY---LTHEDQLKL 79 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHH------------GGGSCEEEEEGGGGB---CCHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHHHHHh------------CCCcceEeeccCCCC---CCHHHHHHH
Confidence 789999999999999988865431100 012347777777663 455554443
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.42 E-value=0.027 Score=53.11 Aligned_cols=33 Identities=36% Similarity=0.559 Sum_probs=26.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 66 iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+|+.++- |=-+++|+||-++|||||||.|.|..
T Consensus 24 ~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 24 ILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHcCCC---CEEEEEEECCCCCCHHHHHHHHcCCC
Confidence 4555543 33589999999999999999999965
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.40 E-value=0.028 Score=49.05 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++|+|.+|+|||||++.+..-
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhhC
Confidence 799999999999999887753
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.38 E-value=0.029 Score=53.46 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+||+|.+-+|||||+|+|+|-.
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EeEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999999853
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.36 E-value=0.031 Score=47.67 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++++|.+|+|||||++-+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999988764
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=92.13 E-value=0.059 Score=46.92 Aligned_cols=35 Identities=29% Similarity=0.255 Sum_probs=26.7
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
+-||. ++-.-.|.=+.|.|+||+|||||.-.|..+
T Consensus 4 t~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 4 TSLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eeEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 34565 444567889999999999999998776644
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.10 E-value=0.035 Score=50.12 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhc-CCCCccc
Q 010509 79 MLAMLGPSGCGKTTLLTALGG-RLGRING 106 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g-~~~~~~G 106 (508)
-+.|+|.+|+|||||++-+.. ...|+-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 468999999999999998753 3345555
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.04 E-value=0.02 Score=53.84 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=30.2
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccE-EEECCEe
Q 010509 72 GMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGR-ITYNGKP 114 (508)
Q Consensus 72 ~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~-I~~~G~~ 114 (508)
+=++.|.++-|.||+|+|||||+-.++.......|. |+++.+.
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~ 98 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH 98 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence 578999999999999999999965555432122333 5556554
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=91.96 E-value=0.035 Score=52.45 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|.-.||||||+|+|.|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999964
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.92 E-value=0.033 Score=48.70 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++++|++|+|||||++.+.+-
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999887653
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=91.81 E-value=0.052 Score=50.71 Aligned_cols=29 Identities=31% Similarity=0.504 Sum_probs=25.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 010509 72 GMVKPGEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 72 ~~v~~Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
+=+++|.++-|.||+|+|||||.-.++..
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~ 77 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAA 77 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHHH
Confidence 67899999999999999999997666653
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=91.73 E-value=0.034 Score=52.64 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-+||+|.+.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3899999999999999999974
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.72 E-value=0.037 Score=52.03 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|.-.||||||+|+|.|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999964
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.67 E-value=0.045 Score=47.14 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=22.3
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCCcccE
Q 010509 80 LAMLGPSGCGKTTLLTALGGRLGRINGR 107 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~~~~~G~ 107 (508)
+.++|..|+|||||++-+..-.-|+.|.
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~~~t~~~ 32 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIHEAGTGI 32 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSCCCSE
T ss_pred EEEECCCCCCHHHHHHHHhhCCCCCccE
Confidence 6899999999999999886544455553
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.51 E-value=0.035 Score=55.90 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
=+.++||+|+|||-|.|.||+.+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l 73 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLA 73 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999976
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.50 E-value=0.043 Score=47.58 Aligned_cols=20 Identities=40% Similarity=0.783 Sum_probs=17.5
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 010509 80 LAMLGPSGCGKTTLLTALGG 99 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g 99 (508)
++++|.+|+|||||++-+..
T Consensus 5 ivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999986665
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.49 E-value=0.043 Score=49.07 Aligned_cols=21 Identities=38% Similarity=0.401 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++|+|..+||||||++.|.+.
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 799999999999999999653
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.43 E-value=0.054 Score=51.83 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
|...+.++||+|+|||.|.+.||-.+
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCcchhHHHHHHHHhhc
Confidence 44467899999999999999999764
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=91.28 E-value=0.047 Score=51.69 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=26.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 72 GMVKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 72 ~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+.+-.|+-.+|+|++|+|||||+..|+.-.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 467799999999999999999999998643
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=90.86 E-value=0.066 Score=47.51 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
|.=-+||+|.-.+|||||++.|.|..
T Consensus 7 p~ini~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 7 PEVNIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCeEEEEEEccCCcHHHHHHHHHhhh
Confidence 33347999999999999999999865
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=90.33 E-value=0.079 Score=47.80 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~ 100 (508)
.++||.|+-||||||..+.|...
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 37899999999999999999753
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=90.31 E-value=0.062 Score=50.29 Aligned_cols=20 Identities=50% Similarity=0.682 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 010509 79 MLAMLGPSGCGKTTLLTALG 98 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~ 98 (508)
-++|+|+.|+|||||...|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 36999999999999999994
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.28 E-value=0.065 Score=46.26 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=21.5
Q ss_pred EEEECCCCCcHHHHHHHHhcCC---CCccc
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL---GRING 106 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~---~~~~G 106 (508)
+.++|..|+|||||++-+..-. .|+-|
T Consensus 5 iv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence 6899999999999999986533 35555
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=90.22 E-value=0.051 Score=52.28 Aligned_cols=30 Identities=37% Similarity=0.526 Sum_probs=24.0
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 71 TGMVKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 71 s~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-...++| ++.+.||+|+|||.|.+.|++..
T Consensus 118 ~~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 118 GHRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp TEEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred hcccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 3445555 66778999999999999999864
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=90.12 E-value=0.067 Score=49.97 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-+||+|-+-+|||||+++|++-.
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999753
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.81 E-value=0.066 Score=48.47 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
++.|-|.=||||||||+-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6789999999999999998764
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.75 E-value=0.086 Score=47.42 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.+++|=|+-||||||+++.|+-.+
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 478899999999999999999755
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=89.66 E-value=0.071 Score=52.05 Aligned_cols=39 Identities=31% Similarity=0.287 Sum_probs=30.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEE-EECCEeC
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRI-TYNGKPF 115 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I-~~~G~~~ 115 (508)
++++..+.+.||+|+||||+.++|++.++ |.+ .+|+-+.
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s~~ 190 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLPLD 190 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSCTT
T ss_pred CCCcCeEEEECCCCCCHHHHHHHHHHHcC---CCEEEEECcch
Confidence 36778999999999999999999999763 333 3555443
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.51 E-value=0.079 Score=49.77 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 010509 79 MLAMLGPSGCGKTTLLTALG 98 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~ 98 (508)
-+||+|+.|||||||...|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 36999999999999999994
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=88.50 E-value=0.11 Score=46.55 Aligned_cols=94 Identities=13% Similarity=0.108 Sum_probs=62.9
Q ss_pred HhhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHH----hhccEEEEEeCCeEEEEcChhh--
Q 010509 202 ILINPSLLFLDEPTSG-LDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLY----YMFHKVLLLSEGYPLYSGEASG-- 274 (508)
Q Consensus 202 L~~~P~illLDEPtsg-LD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~----~~~D~v~lL~~G~iv~~G~~~~-- 274 (508)
...+.++|++|+-=.= =+...+..+..++.++.+.|+.+|+++..+...+. ++..| +..|-++.--++++
T Consensus 94 ~~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SR---L~~g~~~~i~p~d~~~ 170 (213)
T d1l8qa2 94 MYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSR---FEGGILVEIELDNKTR 170 (213)
T ss_dssp HHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHH---HHTSEEEECCCCHHHH
T ss_pred HHhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchhccccchHHHHH---hhCceEEEECCCcHHH
Confidence 3567899999987432 35777888999999998889999999887654332 12233 35666654444444
Q ss_pred ---HHHHHHhcCCCCCCCCChHHHHHHhh
Q 010509 275 ---AMNYFASIGYCPSVPTNPSDFLLDLA 300 (508)
Q Consensus 275 ---~~~~f~~~g~~~p~~~npad~~~~~~ 300 (508)
+..++.+.|+..++ +..+|+++-+
T Consensus 171 ~~iL~~~a~~rgl~l~~--~v~~yl~~~~ 197 (213)
T d1l8qa2 171 FKIIKEKLKEFNLELRK--EVIDYLLENT 197 (213)
T ss_dssp HHHHHHHHHHTTCCCCH--HHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCCH--HHHHHHHHhc
Confidence 24566677877665 6677776643
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=87.83 E-value=0.11 Score=50.89 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=18.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 010509 78 EMLAMLGPSGCGKTTLLTALGG 99 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g 99 (508)
..+.|+|++|||||++++.|.-
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~ 72 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAY 72 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHHHH
Confidence 4589999999999999976553
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=87.21 E-value=0.16 Score=45.20 Aligned_cols=68 Identities=12% Similarity=0.223 Sum_probs=38.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC--hhhHHHHHHh
Q 010509 206 PSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE--ASGAMNYFAS 281 (508)
Q Consensus 206 P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~--~~~~~~~f~~ 281 (508)
.+++++||. -.|...++..+++.|.+-. .+..+|+++++++.....+-.|.. ++..-+ .+++..+.++
T Consensus 109 ~kviIide~-d~l~~~a~n~Llk~lEep~-~~~~fIl~t~~~~~ll~tI~SRc~------~i~~~~~~~~~~~~~L~~ 178 (207)
T d1a5ta2 109 AKVVWVTDA-ALLTDAAANALLKTLEEPP-AETWFFLATREPERLLATLRSRCR------LHYLAPPPEQYAVTWLSR 178 (207)
T ss_dssp CEEEEESCG-GGBCHHHHHHHHHHHTSCC-TTEEEEEEESCGGGSCHHHHTTSE------EEECCCCCHHHHHHHHHH
T ss_pred cceEEechh-hhhhhhhhHHHHHHHHhhc-ccceeeeeecChhhhhhhhcceeE------EEecCCCCHHHHHHHHHH
Confidence 679999986 2344555666665554432 356678899987643333334432 222222 3456666655
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.64 E-value=0.2 Score=46.78 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=25.7
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 010509 71 TGMVKPGEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 71 s~~v~~Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
=+.+-.|+-.+|.|++|+|||||+..++..
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 357889999999999999999998777643
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=86.52 E-value=0.17 Score=45.71 Aligned_cols=50 Identities=12% Similarity=0.202 Sum_probs=33.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccE
Q 010509 206 PSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHK 257 (508)
Q Consensus 206 P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~ 257 (508)
.+++++||.=. |+..++..+++.+.+-. .+..+|+++++++..+..+-+|
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~-~~~~~il~tn~~~~i~~~i~SR 165 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPP-EHVKFLLATTDPQKLPVTILSR 165 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCC-TTEEEEEEESCGGGSCHHHHTT
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCC-CCeEEEEEcCCccccChhHhhh
Confidence 45999999854 77777776666665321 3568889998876544444333
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=86.43 E-value=0.12 Score=47.70 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=13.3
Q ss_pred EEEEECCCCCcHHHHH
Q 010509 79 MLAMLGPSGCGKTTLL 94 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL 94 (508)
-+.|.|+.||||||.|
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 3678999999999754
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=86.30 E-value=0.19 Score=47.89 Aligned_cols=26 Identities=42% Similarity=0.694 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
|.-.+.++||+|+|||.|.+.|+-.+
T Consensus 52 p~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 52 PIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp CSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCcchHHHHHHHHHHHh
Confidence 44457899999999999999999865
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=85.99 E-value=0.2 Score=44.28 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
+||+|.-++|||||++.|.+.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 799999999999999999864
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=85.75 E-value=0.2 Score=46.65 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-..|+||+|.|||++..-|+.++
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHH
Confidence 35799999999999999999875
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=85.48 E-value=0.15 Score=47.72 Aligned_cols=25 Identities=28% Similarity=0.558 Sum_probs=17.6
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHH
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLL 94 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL 94 (508)
+.|+++. .|. +.|.|+.||||||.|
T Consensus 17 ~~~v~~~-----~g~-~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 17 QEAVRTT-----EGP-LLIMAGAGSGKTRVL 41 (318)
T ss_dssp HHHHHCC-----SSC-EEEEECTTSCHHHHH
T ss_pred HHHHhCC-----CCC-EEEEecCCccHHHHH
Confidence 3455543 344 678999999999765
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=85.47 E-value=0.17 Score=48.01 Aligned_cols=20 Identities=45% Similarity=0.722 Sum_probs=17.6
Q ss_pred eCCeEEEEECCCCCcHHHHH
Q 010509 75 KPGEMLAMLGPSGCGKTTLL 94 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL 94 (508)
+.|++.++.|-||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 46889999999999999964
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=85.39 E-value=0.28 Score=45.40 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
.+-.++|+|-+-+|||||+|.|.|...
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEEecCccchhhhhhhhhccce
Confidence 344589999999999999999999763
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=85.11 E-value=0.24 Score=43.93 Aligned_cols=22 Identities=32% Similarity=0.688 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
..|+||+|.|||++..-|+.++
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEecCCcccHHHHHHHHHHH
Confidence 5799999999999999999865
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=84.91 E-value=0.17 Score=48.14 Aligned_cols=19 Identities=47% Similarity=0.740 Sum_probs=16.9
Q ss_pred CCeEEEEECCCCCcHHHHH
Q 010509 76 PGEMLAMLGPSGCGKTTLL 94 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL 94 (508)
.|++..+.|.||+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEEccCCCCccccc
Confidence 5888999999999999963
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=84.16 E-value=0.24 Score=44.44 Aligned_cols=19 Identities=37% Similarity=0.499 Sum_probs=17.7
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 010509 80 LAMLGPSGCGKTTLLTALG 98 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~ 98 (508)
++++|.-++|||||+..|.
T Consensus 6 i~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHH
Confidence 7999999999999999884
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=83.90 E-value=0.26 Score=47.85 Aligned_cols=26 Identities=31% Similarity=0.662 Sum_probs=21.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++. +.++||+|+|||-|.|.||...
T Consensus 67 p~~n-iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 67 SKSN-ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcc-eeeeCCCCccHHHHHHHHHhhc
Confidence 4554 5667999999999999999764
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=83.51 E-value=0.4 Score=45.97 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRLGR 103 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~~~ 103 (508)
.+.|=|+=|+||||+++.|+..+..
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEEECCccCCHHHHHHHHHHHhcc
Confidence 3567799999999999999987643
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.95 E-value=0.28 Score=47.20 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 010509 80 LAMLGPSGCGKTTLLTALG 98 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~ 98 (508)
+||+|+-|+|||||+..|.
T Consensus 20 I~iiGhvd~GKTTL~d~Ll 38 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLV 38 (341)
T ss_dssp EEEECCGGGTHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHH
Confidence 7999999999999999994
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=82.91 E-value=0.26 Score=46.92 Aligned_cols=19 Identities=47% Similarity=0.744 Sum_probs=17.3
Q ss_pred CCeEEEEECCCCCcHHHHH
Q 010509 76 PGEMLAMLGPSGCGKTTLL 94 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL 94 (508)
.|++..+.|-||+|||||-
T Consensus 13 ~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 6788899999999999985
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=82.11 E-value=0.36 Score=43.39 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++++|.-.+|||||++.|...
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~ 32 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHD 32 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999653
|
| >d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: ATP:corrinoid adenosyltransferase CobA species: Salmonella typhimurium [TaxId: 90371]
Probab=81.68 E-value=0.64 Score=39.54 Aligned_cols=58 Identities=21% Similarity=0.156 Sum_probs=46.6
Q ss_pred CCCEEEEeCCCCC--CCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 205 NPSLLFLDEPTSG--LDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 205 ~P~illLDEPtsg--LD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
+.++++|||-... ++-....+++++|++ +.++.-+|+|=+++..++.+.+|-|.-|..
T Consensus 94 ~~dllILDEi~~Ai~~gli~~~~v~~ll~~-rp~~~evVlTGr~~p~~L~e~ADlVTEm~~ 153 (157)
T d1g5ta_ 94 LLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILDLADTVSELRP 153 (157)
T ss_dssp TCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred ccCEEeHHHHHHHHHcCCCCHHHHHHHHHh-CCCCCEEEEECCCCCHHHHHhcceeeeeee
Confidence 3699999999774 444556788888865 345789999999999999999999988763
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=81.15 E-value=0.35 Score=46.35 Aligned_cols=34 Identities=26% Similarity=0.300 Sum_probs=25.2
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCCcccEEEECCE
Q 010509 80 LAMLGPSGCGKTTLLTALGGRLGRINGRITYNGK 113 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~ 113 (508)
+.|=|+=||||||+++.|+..+......+.+-.+
T Consensus 8 I~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~E 41 (331)
T d1osna_ 8 IYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGE 41 (331)
T ss_dssp EEEEESSSSCTTHHHHHHHHTTTTSGGGEEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCceEEEeC
Confidence 7788999999999999999877543334444333
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=80.77 E-value=0.58 Score=45.16 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=17.8
Q ss_pred CCeEEEEECCCCCcHHHHHHH
Q 010509 76 PGEMLAMLGPSGCGKTTLLTA 96 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~ 96 (508)
.+.++.|-||.|+||||++..
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHHH
T ss_pred cCCeEEEEcCCCCCceehHHH
Confidence 366999999999999998743
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=80.38 E-value=0.55 Score=39.00 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=28.0
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcc
Q 010509 204 INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPS 248 (508)
Q Consensus 204 ~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~ 248 (508)
.++++++.||-== ++ .++.+.+..+.+.|++|+++--|.+
T Consensus 78 ~~~dvI~IDE~QF-f~----d~i~~~~~~~~~~g~~Viv~GLd~D 117 (139)
T d2b8ta1 78 DETKVIGIDEVQF-FD----DRICEVANILAENGFVVIISGLDKN 117 (139)
T ss_dssp TTCCEEEECSGGG-SC----THHHHHHHHHHHTTCEEEEECCSBC
T ss_pred cCcCEEEechhhh-cc----hhHHHHHHHHHhcCceEEEEEeccc
Confidence 3688999999722 11 2355666666778999999987753
|