Citrus Sinensis ID: 010516

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------51
MYRNAASRLRALKGHVRCRVPSATRFASSSAVASTSSSSGGLFSWLTGERSSSSPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAVSSKFKSK
ccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEcccccEEEEEEEEcccccccccccccHHHHHHHHcccccccccHHHHHHHHHHcccEEEEEccccEEEEEEEEccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccHHHHccccHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHcccccccccccccccccccccEEEEccccccEEEEEEEcccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccEEEEEEccccccccccEEEEEEcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHcc
cHHHHHHHHHHHHHccccHHHHHHHHccHHHHHHcccccccHHHHcccccccccccccccccccccccccHHHccccccEEEEcccccEEEEEccccccEEEEEEEcccHHHcccccccHHHHHHHcccccEccccHHHHHHHHHHccccEEEEEccccEEEEEEEcHHHHHHHHHHHHHHHHcEcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHccccccHHHcccccHHHHHHHHHHHccHHHEEEEEEcccHHHHHHHHHHHccccccccccccccccEcccEEEEcccccccEEEEEEEccccccccccHHHHHHHHHHHcEEEcccccccccccccHHHHHcccccccEEEEEEEEEEccccEEEEEEEEEcHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHccc
MYRNAASRLRALKGhvrcrvpsatrfasssavastssssgglfswltgersssspsldfplpgvslppslpdyvepgktkistlpngvkiasetsvspvASISLYVGcgsiyespisfgTTHLLERMAFRSTRNRSHLRIVREVEAIggnvqasasreqmGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAgysgalanpllapesAINRLNSTLLEEFvaenytgprmvlaasgvehdqlvsvaepllsdlpsihpreepksvytggdyrcqadsgLTHFVLAFelpggwhkdkdaMTLTVLQMLLggggsfsaggpgkgmYSRLYRRVLnefpqvqsfsafsniynhsgmfgiqgttgsdFVSKAIDLAARELIsvatpgevdqVQLDRAKQSTKSAILMNLESrmvvsedigrqvltygerkpveHFLKTVEGVTAKDIASVAQKLLsspltmasygdvinvpsydavsskfksk
myrnaasrlralkghvrcrvpsatrfasssavastssssgglFSWLTGERSSSSPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVeaiggnvqasasreqMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPllsdlpsihpREEPKSVYTGGDYRCQADSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISvatpgevdqvqldrakqstksailmnlesrmvvseDIGRQVltygerkpveHFLKTVEGVTAKDIASVAQKLLSSPLtmasygdvinvpsydavsskfksk
MYRNAASRLRALKGHVRCRVPsatrfasssavastssssgglfsWLTGERsssspsLDFplpgvslppslpDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLggggsfsaggpgkgMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAVSSKFKSK
****************************************************************************************KIA**TSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVK***********SLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLL**************VYTGGDYRCQADSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEV**************AILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSY**********
******************************************************************************TKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPL*******************GDYRCQADSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSA*****GMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAVSSKFK**
********LRALKGHVRCRVPSAT****************GLFSWL************FPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYD*********
*YRNAASRLRALKGHVRCRVPSATRFASSSAVAST**************RSSSSPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAVSSK****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MYRNAASRLRALKGHVRCRVPSATRFASSSAVASTSSSSGGLFSWLTGERSSSSPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAVSSKFKSK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query508 2.2.26 [Sep-21-2011]
P29677504 Mitochondrial-processing N/A no 0.992 1.0 0.732 0.0
Q9ZU25503 Probable mitochondrial-pr yes no 0.990 1.0 0.656 0.0
O04308499 Probable mitochondrial-pr no no 0.982 1.0 0.646 1e-168
P11914482 Mitochondrial-processing yes no 0.811 0.854 0.351 1e-54
P22695453 Cytochrome b-c1 complex s yes no 0.805 0.902 0.325 9e-53
P97997474 Mitochondrial-processing N/A no 0.799 0.856 0.331 1e-52
Q10713525 Mitochondrial-processing no no 0.881 0.853 0.337 2e-52
Q5R513525 Mitochondrial-processing no no 0.881 0.853 0.331 3e-52
Q0P5M8525 Mitochondrial-processing yes no 0.874 0.845 0.328 2e-51
Q3SZ71490 Mitochondrial-processing no no 0.826 0.857 0.303 6e-51
>sp|P29677|MPPA_SOLTU Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1 Back     alignment and function desciption
 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/508 (73%), Positives = 434/508 (85%), Gaps = 4/508 (0%)

Query: 1   MYRNAASRLRALKGHVRCRVPSATRFASSSAVASTSSSSGGLFSWLTGERSSSSPSLDFP 60
           MYR A+SRL +LK     RV   TRF+SS+AVA+    SGGLFSW+TG+ SSS   LDFP
Sbjct: 1   MYRCASSRLSSLKARQGNRV--LTRFSSSAAVAT--KPSGGLFSWITGDTSSSVTPLDFP 56

Query: 61  LPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGT 120
           L  V L P LPDYVEP KT+I+TL NG+K+ASE SV+P ASI LYV CGSIYE+P S+G 
Sbjct: 57  LNDVKLSPPLPDYVEPAKTQITTLANGLKVASEASVNPAASIGLYVDCGSIYETPASYGA 116

Query: 121 THLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLID 180
           THLLERMAF+ST NRSHLRIVRE+EAIGGNV ASASRE M Y++DALKTYVP+MVE+L D
Sbjct: 117 THLLERMAFKSTLNRSHLRIVREIEAIGGNVTASASREHMIYTYDALKTYVPQMVEMLAD 176

Query: 181 CVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINR 240
           CVRNP FLDWEV EQL KVK+EISE S NPQ LLLEA+HSAGY+G   N L+A E+ INR
Sbjct: 177 CVRNPAFLDWEVKEQLEKVKAEISEYSKNPQHLLLEAVHSAGYAGPYGNSLMATEATINR 236

Query: 241 LNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDY 300
           LNST+LEEFVAENYT PRMVLAASGVEH++ + VAEPLLSDLP +   EEPK VY GGDY
Sbjct: 237 LNSTVLEEFVAENYTAPRMVLAASGVEHEEFLKVAEPLLSDLPKVATIEEPKPVYVGGDY 296

Query: 301 RCQADSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRV 360
           RCQAD+ +THF LAFE+PGGW  +K++MTLTVLQML+GGGGSFSAGGPGKGMYSRLY RV
Sbjct: 297 RCQADAEMTHFALAFEVPGGWMSEKESMTLTVLQMLMGGGGSFSAGGPGKGMYSRLYLRV 356

Query: 361 LNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLD 420
           LN++PQ+ +FSAFS+IYN++G+FGIQGTT SDF  +A+D+A +ELI+VA P EVDQVQL+
Sbjct: 357 LNQYPQIHAFSAFSSIYNNTGLFGIQGTTSSDFGPQAVDVAVKELIAVANPSEVDQVQLN 416

Query: 421 RAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLL 480
           RAKQ+TKSAILMNLESRMV SEDIGRQ+LTYGER PVEHFLK ++ V+AKDIASV QKL+
Sbjct: 417 RAKQATKSAILMNLESRMVASEDIGRQLLTYGERNPVEHFLKAIDAVSAKDIASVVQKLI 476

Query: 481 SSPLTMASYGDVINVPSYDAVSSKFKSK 508
           SSPLTMASYGDV+++PSYDAVSS+F+SK
Sbjct: 477 SSPLTMASYGDVLSLPSYDAVSSRFRSK 504
This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. Mediate formation of the complex between cytochromes c and c1.
Solanum tuberosum (taxid: 4113)
EC: 1EC: .EC: 1EC: 0EC: .EC: 2EC: .EC: 2
>sp|Q9ZU25|MPPA1_ARATH Probable mitochondrial-processing peptidase subunit alpha-1 OS=Arabidopsis thaliana GN=At1g51980 PE=1 SV=1 Back     alignment and function description
>sp|O04308|MPPA2_ARATH Probable mitochondrial-processing peptidase subunit alpha-2 OS=Arabidopsis thaliana GN=MPPA2 PE=1 SV=1 Back     alignment and function description
>sp|P11914|MPPA_YEAST Mitochondrial-processing peptidase subunit alpha OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAS2 PE=1 SV=1 Back     alignment and function description
>sp|P22695|QCR2_HUMAN Cytochrome b-c1 complex subunit 2, mitochondrial OS=Homo sapiens GN=UQCRC2 PE=1 SV=3 Back     alignment and function description
>sp|P97997|MPPA_BLAEM Mitochondrial-processing peptidase subunit alpha OS=Blastocladiella emersonii PE=3 SV=1 Back     alignment and function description
>sp|Q10713|MPPA_HUMAN Mitochondrial-processing peptidase subunit alpha OS=Homo sapiens GN=PMPCA PE=1 SV=2 Back     alignment and function description
>sp|Q5R513|MPPA_PONAB Mitochondrial-processing peptidase subunit alpha OS=Pongo abelii GN=PMPCA PE=2 SV=2 Back     alignment and function description
>sp|Q0P5M8|MPPA_BOVIN Mitochondrial-processing peptidase subunit alpha OS=Bos taurus GN=PMPCA PE=2 SV=1 Back     alignment and function description
>sp|Q3SZ71|MPPB_BOVIN Mitochondrial-processing peptidase subunit beta OS=Bos taurus GN=PMPCB PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query508
356513189511 PREDICTED: mitochondrial-processing pept 0.996 0.990 0.794 0.0
356523720509 PREDICTED: mitochondrial-processing pept 0.996 0.994 0.790 0.0
356513191508 PREDICTED: mitochondrial-processing pept 0.998 0.998 0.793 0.0
225445041506 PREDICTED: mitochondrial-processing pept 0.996 1.0 0.803 0.0
357520795510 Mitochondrial-processing peptidase subun 1.0 0.996 0.784 0.0
217075747510 unknown [Medicago truncatula] gi|3885152 1.0 0.996 0.778 0.0
225442426506 PREDICTED: mitochondrial-processing pept 0.996 1.0 0.771 0.0
449487989505 PREDICTED: mitochondrial-processing pept 0.990 0.996 0.768 0.0
255546263507 mitochondrial processing peptidase alpha 0.994 0.996 0.770 0.0
449446550505 PREDICTED: mitochondrial-processing pept 0.990 0.996 0.766 0.0
>gi|356513189|ref|XP_003525296.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like isoform 1 [Glycine max] Back     alignment and taxonomy information
 Score =  813 bits (2100), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/512 (79%), Positives = 456/512 (89%), Gaps = 6/512 (1%)

Query: 1   MYRNAASRLRALKGHVRC----RVPSATRFASSSAVASTSSSS-GGLFSWLTGERSSSSP 55
           MYRNAASRLRA+K    C    RVP++ RFASS A   +SSS  GGLF WLTG+R+SS P
Sbjct: 1   MYRNAASRLRAIKAR-SCSSSSRVPASARFASSVATQQSSSSGLGGLFGWLTGDRTSSLP 59

Query: 56  SLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESP 115
           SL FPLPGV+LPP LPDYV PGKT I+TLPNG+K+ASETS SP ASI LYV CGSIYESP
Sbjct: 60  SLGFPLPGVTLPPPLPDYVAPGKTIITTLPNGLKVASETSPSPTASIGLYVDCGSIYESP 119

Query: 116 ISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMV 175
           ISFG THLLERMAF++TRNRSH R+VREVEAIGGNVQASASREQMGY+FDALKTYVPEMV
Sbjct: 120 ISFGATHLLERMAFKTTRNRSHFRVVREVEAIGGNVQASASREQMGYTFDALKTYVPEMV 179

Query: 176 ELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPE 235
           ELL+DCVRNPVFLDWEVNEQL KVK+EI E S NPQ LLLEAIHSAG+SGALANPLLA E
Sbjct: 180 ELLVDCVRNPVFLDWEVNEQLLKVKAEIGEASKNPQDLLLEAIHSAGFSGALANPLLASE 239

Query: 236 SAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVY 295
           SA+NRLNST+LEEFVAENYT PR+VLAASGVEH++L+S+AEPLLSDLPS+   EEPKSVY
Sbjct: 240 SAVNRLNSTILEEFVAENYTAPRIVLAASGVEHEELLSIAEPLLSDLPSVPRPEEPKSVY 299

Query: 296 TGGDYRCQADSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSR 355
           TGGDYRCQ +SG THF LAFELPGGWHK KDAM LTVLQMLLGGGGSFSAGGPGKGMYSR
Sbjct: 300 TGGDYRCQKESGRTHFALAFELPGGWHKLKDAMVLTVLQMLLGGGGSFSAGGPGKGMYSR 359

Query: 356 LYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVD 415
           LY+ VLNE+PQV   SAF+NIYN +G+FGIQ TTGSDFVSKAID+AA E+++VATPG+VD
Sbjct: 360 LYQNVLNEYPQVHEISAFNNIYNDTGIFGIQVTTGSDFVSKAIDIAANEILAVATPGQVD 419

Query: 416 QVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASV 475
           QVQLDRAKQ+TKSAILMNLESRMVVSEDIGRQ+LTYGERKPVE FLK V+ VT+KDI S+
Sbjct: 420 QVQLDRAKQATKSAILMNLESRMVVSEDIGRQILTYGERKPVEDFLKAVDEVTSKDITSI 479

Query: 476 AQKLLSSPLTMASYGDVINVPSYDAVSSKFKS 507
           ++KL+ SPLTMASYGDV+ VPSY++VS KF++
Sbjct: 480 SRKLICSPLTMASYGDVLYVPSYESVSLKFRA 511

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356523720|ref|XP_003530483.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|356513191|ref|XP_003525297.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|225445041|ref|XP_002283310.1| PREDICTED: mitochondrial-processing peptidase subunit alpha [Vitis vinifera] gi|297738729|emb|CBI27974.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357520795|ref|XP_003630686.1| Mitochondrial-processing peptidase subunit alpha [Medicago truncatula] gi|355524708|gb|AET05162.1| Mitochondrial-processing peptidase subunit alpha [Medicago truncatula] Back     alignment and taxonomy information
>gi|217075747|gb|ACJ86233.1| unknown [Medicago truncatula] gi|388515299|gb|AFK45711.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|225442426|ref|XP_002283426.1| PREDICTED: mitochondrial-processing peptidase subunit alpha [Vitis vinifera] gi|297743169|emb|CBI36036.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449487989|ref|XP_004157901.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255546263|ref|XP_002514191.1| mitochondrial processing peptidase alpha subunit, putative [Ricinus communis] gi|223546647|gb|EEF48145.1| mitochondrial processing peptidase alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449446550|ref|XP_004141034.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query508
TAIR|locus:2034096503 AT1G51980 [Arabidopsis thalian 0.990 1.0 0.583 6e-151
TAIR|locus:2088309499 MPPalpha "mitochondrial proces 0.982 1.0 0.563 5.1e-145
ASPGD|ASPL0000062345570 AN1104 [Emericella nidulans (t 0.433 0.385 0.339 1.4e-59
GENEDB_PFALCIPARUM|PFE1155c534 PFE1155c "mitochondrial proces 0.820 0.780 0.331 8.9e-54
UNIPROTKB|Q8I3N3534 PFE1155c "Mitochondrial proces 0.820 0.780 0.331 8.9e-54
SGD|S000001066482 MAS2 "Larger subunit of the mi 0.801 0.844 0.330 1.5e-53
ZFIN|ZDB-GENE-030131-1269454 uqcrc2b "ubiquinol-cytochrome 0.824 0.922 0.316 1.5e-53
ZFIN|ZDB-GENE-040718-405460 uqcrc2a "ubiquinol-cytochrome 0.824 0.910 0.312 2.7e-52
UNIPROTKB|F1P582457 UQCRC2 "Uncharacterized protei 0.812 0.903 0.314 4e-51
UNIPROTKB|P22695453 UQCRC2 "Cytochrome b-c1 comple 0.822 0.922 0.315 1.1e-50
TAIR|locus:2034096 AT1G51980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1473 (523.6 bits), Expect = 6.0e-151, P = 6.0e-151
 Identities = 295/506 (58%), Positives = 362/506 (71%)

Query:     1 MYRNAASRLRALKGHVRCRVPXXXXXXXXXXXXXXXXXXXXXXXWLTGERXXXXXXLDFX 60
             MYR AASR RALKG V  R                         WL+G        LD  
Sbjct:     1 MYRTAASRARALKG-VLTRSLRPARYASSSAVAETSSSTPAYLSWLSGGSRAALTSLDMP 59

Query:    61 XXXXXXXXXXXDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGT 120
                        D VEP K +I+TLPNG+KIASET+ +P ASI LYV CGSIYE+P   G 
Sbjct:    60 LQGVSLPPPLADKVEPSKLQITTLPNGLKIASETTPNPAASIGLYVDCGSIYEAPYFHGA 119

Query:   121 THLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLID 180
             THLLERMAF+ST NR+H R+VRE+EAIGGN  ASASREQM Y+ DALKTYVPEMVE+LID
Sbjct:   120 THLLERMAFKSTLNRTHFRLVREIEAIGGNTSASASREQMSYTIDALKTYVPEMVEVLID 179

Query:   181 CVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINR 240
              VRNP FLDWEVNE+L K+K EI+E++ NP   LLEAIHSAGYSG LA+PL APESA++R
Sbjct:   180 SVRNPAFLDWEVNEELRKMKVEIAELAKNPMGFLLEAIHSAGYSGPLASPLYAPESALDR 239

Query:   241 LNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDY 300
             LN  LLEEF+ EN+T  RMVLAASGVEH++L+ VAEPL SDLP++ P+  PKS Y GGD+
Sbjct:   240 LNGELLEEFMTENFTAARMVLAASGVEHEELLKVAEPLTSDLPNVPPQLAPKSQYVGGDF 299

Query:   301 RCQADSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRV 360
             R       THF +AFE+PG W+ +K+A+T TVLQML+              M+S LYRRV
Sbjct:   300 RQHTGGEATHFAVAFEVPG-WNNEKEAVTATVLQMLMGGGGSFSAGGPGKGMHSWLYRRV 358

Query:   361 LNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLD 420
             LNE+ +VQS +AF++I+N +G+FGI G +   F +KAI+LAA+EL  VA  G+V+Q  LD
Sbjct:   359 LNEYQEVQSCTAFTSIFNDTGLFGIYGCSSPQFAAKAIELAAKELKDVAG-GKVNQAHLD 417

Query:   421 RAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLL 480
             RAK +TKSA+LMNLESRM+ +EDIGRQ+LTYGERKPV+ FLK+V+ +T KDIA    K++
Sbjct:   418 RAKAATKSAVLMNLESRMIAAEDIGRQILTYGERKPVDQFLKSVDQLTLKDIADFTSKVI 477

Query:   481 SSPLTMASYGDVINVPSYDAVSSKFK 506
             S PLTM S+GDV+ VPSYD +SSKF+
Sbjct:   478 SKPLTMGSFGDVLAVPSYDTISSKFR 503
GO:0003824 "catalytic activity" evidence=IEA
GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0009536 "plastid" evidence=IDA
GO:0005524 "ATP binding" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP;RCA
GO:0005750 "mitochondrial respiratory chain complex III" evidence=IDA
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0009060 "aerobic respiration" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
TAIR|locus:2088309 MPPalpha "mitochondrial processing peptidase alpha subunit" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000062345 AN1104 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PFE1155c PFE1155c "mitochondrial processing peptidase alpha subunit, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8I3N3 PFE1155c "Mitochondrial processing peptidase alpha subunit, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
SGD|S000001066 MAS2 "Larger subunit of the mitochondrial processing protease (MPP)" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-1269 uqcrc2b "ubiquinol-cytochrome c reductase core protein IIb" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040718-405 uqcrc2a "ubiquinol-cytochrome c reductase core protein IIa" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1P582 UQCRC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P22695 UQCRC2 "Cytochrome b-c1 complex subunit 2, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9DC61MPPA_MOUSE3, ., 4, ., 2, 4, ., 6, 40.32270.87590.8492yesno
Q0P5M8MPPA_BOVIN3, ., 4, ., 2, 4, ., 6, 40.32830.87400.8457yesno
P29677MPPA_SOLTU1, ., 1, 0, ., 2, ., 20.73220.99211.0N/Ano
Q4W6B5MPPB_DICDI3, ., 4, ., 2, 4, ., 6, 40.31460.82870.8976yesno
P11914MPPA_YEAST3, ., 4, ., 2, 4, ., 6, 40.35130.81100.8547yesno
Q9ZU25MPPA1_ARATH3, ., 4, ., 2, 4, ., 6, 40.65610.99011.0yesno
P22695QCR2_HUMANNo assigned EC number0.32540.80510.9028yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.24.640.979
3rd Layer3.4.240.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00016635001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (506 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00021058001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (523 aa)
  ••••••0.435

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query508
COG0612438 COG0612, PqqL, Predicted Zn-dependent peptidases [ 2e-60
pfam00675149 pfam00675, Peptidase_M16, Insulinase (Peptidase fa 6e-42
pfam05193182 pfam05193, Peptidase_M16_C, Peptidase M16 inactive 3e-31
>gnl|CDD|223685 COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information 
 Score =  204 bits (521), Expect = 2e-60
 Identities = 112/421 (26%), Positives = 184/421 (43%), Gaps = 34/421 (8%)

Query: 78  KTKISTLPNGVKIAS-ETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRS 136
             ++ TLPNG+++ +     +P  S+ ++V  GS  E     G  H LE MAF+ T    
Sbjct: 16  GLQVFTLPNGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLP 75

Query: 137 HLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQL 196
              +    E +GG + A  S +   Y    L   + + ++LL D + NP F + EV  + 
Sbjct: 76  SAELAEAFEKLGGQLNAFTSFDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEVEREK 135

Query: 197 TKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYT 255
             +  EI    ++P  L  E +  A Y    L  P+L  E +I  +    L++F  + Y 
Sbjct: 136 GVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGTEESIEAITREDLKDFYQKWYQ 195

Query: 256 GPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPKSV-YTGG------DYRCQADSG 307
              MVL   G V+ +++V + E    DLP   P  +       G       +   Q D  
Sbjct: 196 PDNMVLVVVGDVDAEEVVELIEKYFGDLPGAAPPPKIPPEPPLGPERVVRVNDPEQPDLE 255

Query: 308 LTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQV 367
                L +  P  +    D   L +L  LLGG           G  SRL++ +  +    
Sbjct: 256 QAWLALGYPGP-DYDSPDDYAALLLLNGLLGG-----------GFSSRLFQELREKRGLA 303

Query: 368 QSFSAFSNIYNHSGMFGIQGTTG-------SDFVSKAIDLAARELISVATPGEVDQVQLD 420
            S S+FS+  + SG+F I   T        ++ V + +    + L    T  E     LD
Sbjct: 304 YSVSSFSDFLSDSGLFSIYAGTAPENPEKTAELVEEILKALKKGLKGPFTEEE-----LD 358

Query: 421 RAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLL 480
            AKQ     +L++L+S   ++E +G+ +L  G    +E  L+ +E VT +D+ +VA+KLL
Sbjct: 359 AAKQLLIGLLLLSLDSPSSIAELLGQYLLLGGSLITLEELLERIEAVTLEDVNAVAKKLL 418

Query: 481 S 481
           +
Sbjct: 419 A 419

Length = 438
>gnl|CDD|216056 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16) Back     alignment and domain information
>gnl|CDD|218490 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 508
KOG2067472 consensus Mitochondrial processing peptidase, alph 100.0
KOG0960467 consensus Mitochondrial processing peptidase, beta 100.0
COG0612438 PqqL Predicted Zn-dependent peptidases [General fu 100.0
TIGR02110 696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 100.0
PRK15101 961 protease3; Provisional 100.0
KOG2583429 consensus Ubiquinol cytochrome c reductase, subuni 100.0
PRK15101961 protease3; Provisional 100.0
PTZ00432 1119 falcilysin; Provisional 100.0
COG1025 937 Ptr Secreted/periplasmic Zn-dependent peptidases, 99.97
KOG0959 974 consensus N-arginine dibasic convertase NRD1 and r 99.96
COG1025937 Ptr Secreted/periplasmic Zn-dependent peptidases, 99.95
KOG0959974 consensus N-arginine dibasic convertase NRD1 and r 99.93
COG1026 978 Predicted Zn-dependent peptidases, insulinase-like 99.92
COG1026978 Predicted Zn-dependent peptidases, insulinase-like 99.89
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 99.88
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 99.87
PTZ004321119 falcilysin; Provisional 99.87
KOG0961 1022 consensus Predicted Zn2+-dependent endopeptidase, 99.83
KOG2019998 consensus Metalloendoprotease HMP1 (insulinase sup 99.81
KOG2019 998 consensus Metalloendoprotease HMP1 (insulinase sup 99.78
KOG09611022 consensus Predicted Zn2+-dependent endopeptidase, 99.42
PF08367248 M16C_assoc: Peptidase M16C associated; InterPro: I 98.59
PF03410 590 Peptidase_M44: Protein G1; InterPro: IPR005072 In 98.0
COG0612 438 PqqL Predicted Zn-dependent peptidases [General fu 97.89
PHA03081 595 putative metalloprotease; Provisional 97.83
TIGR02110 696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 97.71
KOG0960 467 consensus Mitochondrial processing peptidase, beta 96.58
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 95.86
KOG2067472 consensus Mitochondrial processing peptidase, alph 95.72
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 87.48
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.8e-84  Score=607.28  Aligned_cols=430  Identities=49%  Similarity=0.763  Sum_probs=412.1

Q ss_pred             CCCceEEEEcCCCcEEEEeeCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeEEe
Q 010516           75 EPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQAS  154 (508)
Q Consensus        75 ~~~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~  154 (508)
                      ++.+++.++|+||+||++++++++.+.++++|++|+++|.+...|++|++++|+|++|.+++..++.+.||.+||++.++
T Consensus        21 ~~~~~kvttL~NGlkvase~~pg~f~~vGlyIdsGsrYE~~~~~GisH~lerLAF~ST~~~~~~ei~~~LE~~GGn~~cq  100 (472)
T KOG2067|consen   21 EPSNTKVTTLPNGLKVASENTPGQFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTERFSSKEILAELEKLGGNCDCQ  100 (472)
T ss_pred             ccccceeeecCCccEEeccCCCCCceEEEEEEecCccccCcCcccHHHHHHHHhhccccCCcHHHHHHHHHHhCCccccc
Confidence            66789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecceeEEEEEEcccCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC-CCCCCCCC
Q 010516          155 ASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLA  233 (508)
Q Consensus       155 ~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~~~  233 (508)
                      +++|.+.|.+++.+++++.++++|+|.+.+|+|++|+++.++..++-|+.+...+|+..+.+++|.++|.+ .++.|.++
T Consensus       101 sSRetm~Yaas~~~~~v~sm~~lLadtV~~P~~~d~ev~~~~~~v~~E~~el~~~Pe~lL~e~iH~Aay~~ntlg~pl~c  180 (472)
T KOG2067|consen  101 SSRETMMYAASADSDGVDSMVELLADTVLNPKFTDQEVEEARRAVKYEIEELWMRPEPLLTEMIHSAAYSGNTLGLPLLC  180 (472)
T ss_pred             ccHhhhHHHHHhhhcccHHHHHHHHHHHhcccccHHHHHHHHHhhhheccccccCchhhHHHHHHHHHhccCcccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999977 99999999


Q ss_pred             ChHHhccCCHHHHHHHHHhhcCCCCeEEEEcCCCHHHHHHHHHhhhcCCCCCCCCC--CCCCccCCCeeEeeC-------
Q 010516          234 PESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPRE--EPKSVYTGGDYRCQA-------  304 (508)
Q Consensus       234 ~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~Gv~~e~l~~~~~~~~~~lp~~~~~~--~~~~~~~~~~~~~~~-------  304 (508)
                      +.+.|++|+.+.|.+|.+.+|+|.||++..+||+||++++.+++||+.||+...|+  .++.+|+|+...++.       
T Consensus       181 p~~~i~~I~~~~l~~yl~~~ytp~rmVlA~vGV~heelv~~~~~~~~~~~s~~~p~i~~~~aQYtGG~~~~~~d~~~~~~  260 (472)
T KOG2067|consen  181 PEENIDKINREVLEEYLKYFYTPERMVLAGVGVEHEELVEIAEKLLGDLPSTKVPPIDESKAQYTGGELKIDTDAPQVTG  260 (472)
T ss_pred             ChhhhhhhhHHHHHHHHHhcCChhheEeeecCCCHHHHHHHHHHHhccCCccCCCCcccchhhccccccccCCCCccccC
Confidence            99999999999999999999999999999999999999999999999999865443  456799999655332       


Q ss_pred             CCCceEEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecCCCCcceEE
Q 010516          305 DSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFG  384 (508)
Q Consensus       305 ~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~~~~~g~~~  384 (508)
                      ..+-+||+++|++++ | +++|.+++.+|+.+||||||||||||||||+||||.+|.++++|+|+|.|++..|.|+|+|+
T Consensus       261 g~EltHv~lg~Eg~~-~-~deD~v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry~wv~sctAfnhsy~DtGlfg  338 (472)
T KOG2067|consen  261 GPELTHVVLGFEGCS-W-NDEDFVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRYHWVYSCTAFNHSYSDTGLFG  338 (472)
T ss_pred             ccceeeeeEeeccCC-C-CChhHHHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhhHHHHHhhhhhccccCCceeE
Confidence            237899999999998 6 77899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010516          385 IQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTV  464 (508)
Q Consensus       385 i~~~~~p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~i  464 (508)
                      |+.+++|+++.++++.+.+++..+.. + ++++|++|||+++++.++||++++...+++++||++.+|.++.++++++.|
T Consensus       339 i~~s~~P~~a~~aveli~~e~~~~~~-~-v~~~el~RAK~qlkS~LlMNLESR~V~~EDvGRQVL~~g~rk~p~e~~~~I  416 (472)
T KOG2067|consen  339 IYASAPPQAANDAVELIAKEMINMAG-G-VTQEELERAKTQLKSMLLMNLESRPVAFEDVGRQVLTTGERKPPDEFIKKI  416 (472)
T ss_pred             EeccCCHHHHHHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHHHhcccccchhHHHHhHHHHhccCcCCHHHHHHHH
Confidence            99999999999999999999999987 4 999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHhcCCceEEEEcCCCCCCCHHHHHhHhhcC
Q 010516          465 EGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAVSSKFKSK  508 (508)
Q Consensus       465 ~~vT~~Di~~~a~~~l~~~~~~~~~G~~~~~p~~~~~~~~~~~~  508 (508)
                      +++|++||++++.++|..+++++..||...+|+|+.+.++++.|
T Consensus       417 e~lt~~DI~rva~kvlt~~p~va~~Gd~~~lpt~~~i~~~~~~~  460 (472)
T KOG2067|consen  417 EQLTPSDISRVASKVLTGKPSVAAFGDGTGLPTYDHIGNAVSSG  460 (472)
T ss_pred             HhcCHHHHHHHHHHHhcCCceeccCCcccCCcchhhhhhhcccC
Confidence            99999999999999999999999999999999999999998764

>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion] Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>PHA03081 putative metalloprotease; Provisional Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query508
1hr6_A475 Yeast Mitochondrial Processing Peptidase Length = 4 1e-53
3cwb_B441 Chicken Cytochrome Bc1 Complex Inhibited By An Iodi 2e-52
3bcc_B422 Stigmatellin And Antimycin Bound Cytochrome Bc1 Com 2e-50
1bcc_B422 Cytochrome Bc1 Complex From Chicken Length = 422 4e-50
1bcc_A446 Cytochrome Bc1 Complex From Chicken Length = 446 1e-47
1qcr_B423 Crystal Structure Of Bovine Mitochondrial Cytochrom 6e-47
1sqb_B453 Crystal Structure Analysis Of Bovine Bc1 With Azoxy 7e-47
1bgy_B439 Cytochrome Bc1 Complex From Bovine Length = 439 8e-47
1qcr_A446 Crystal Structure Of Bovine Mitochondrial Cytochrom 1e-42
1sqb_A480 Crystal Structure Analysis Of Bovine Bc1 With Azoxy 2e-42
1bgy_A446 Cytochrome Bc1 Complex From Bovine Length = 446 2e-42
3cwb_A446 Chicken Cytochrome Bc1 Complex Inhibited By An Iodi 9e-42
1hr6_B443 Yeast Mitochondrial Processing Peptidase Length = 4 3e-37
1hr7_B443 Yeast Mitochondrial Processing Peptidase Beta-E73q 5e-37
3hdi_A421 Crystal Structure Of Bacillus Halodurans Metallo Pe 2e-31
1ezv_B352 Structure Of The Yeast Cytochrome Bc1 Complex Co- C 5e-12
3amj_C437 The Crystal Structure Of The Heterodimer Of M16b Pe 9e-10
3ami_A445 The Crystal Structure Of The M16b Metallopeptidase 1e-09
1ezv_A430 Structure Of The Yeast Cytochrome Bc1 Complex Co- C 4e-08
1kb9_A431 Yeast Cytochrome Bc1 Complex Length = 431 4e-07
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase Length = 475 Back     alignment and structure 
Iteration: 1

 Score =  207 bits (528), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 141/444 (31%), Positives = 228/444 (51%), Gaps = 32/444 (7%)
Query: 80  KISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLR 139
           K+S+L NG+K+A+  +    +++ LY+  GS +E     G TH+L+R+AF+ST +     
Sbjct: 7   KLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRA 66
Query: 140 IVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKV 199
           +   +E +GGN Q ++SRE + Y        V +M++L+ + VR P   + E+ EQ    
Sbjct: 67  MAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSA 126
Query: 200 KSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPR 258
           + EI EV   P+ +L E +H+A YSG  L +PL+ P   I  ++   L ++  + YT   
Sbjct: 127 EYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKFYTPEN 186
Query: 259 MVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPK-SVYTGGDYRCQADS-------GLTH 310
            V A  GV H++ + +    L D  S HP    K + YTGG+  C   +        L H
Sbjct: 187 TVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGE-SCIPPAPVFGNLPELFH 245
Query: 311 FVLAFE-LPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQS 369
             + FE LP       D   L  LQ LL              MYSRLY  VLN++  V++
Sbjct: 246 IQIGFEGLP---IDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVEN 302
Query: 370 FSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGE--VDQVQLDRAKQSTK 427
             AF++ Y+ SG+FGI  +       +A+++ A+++ +     +  + + ++ RAK   K
Sbjct: 303 CVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLK 362
Query: 428 SAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMA 487
           S++LMNLES++V  ED+GRQVL +G + PV   +  +E +   DI+ VA+ + +  +  A
Sbjct: 363 SSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDDISRVAEMIFTGNVNNA 422
Query: 488 ----------------SYGDVINV 495
                           S+GDV NV
Sbjct: 423 GNGKGRATVVMQGDRGSFGDVENV 446
>pdb|3CWB|B Chain B, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 441 Back     alignment and structure
>pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex From Chicken Length = 422 Back     alignment and structure
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken Length = 422 Back     alignment and structure
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken Length = 446 Back     alignment and structure
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 423 Back     alignment and structure
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin Length = 453 Back     alignment and structure
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine Length = 439 Back     alignment and structure
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 446 Back     alignment and structure
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin Length = 480 Back     alignment and structure
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine Length = 446 Back     alignment and structure
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 446 Back     alignment and structure
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase Length = 443 Back     alignment and structure
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant Length = 443 Back     alignment and structure
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase Length = 421 Back     alignment and structure
>pdb|1EZV|B Chain B, Structure Of The Yeast Cytochrome Bc1 Complex Co- Crystallized With An Antibody Fv-Fragment Length = 352 Back     alignment and structure
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase From Sphingomonas Sp. A1 Length = 437 Back     alignment and structure
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit From Sphingomonas Sp. A1 Length = 445 Back     alignment and structure
>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co- Crystallized With An Antibody Fv-Fragment Length = 430 Back     alignment and structure
>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex Length = 431 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query508
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 1e-180
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 1e-174
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 1e-161
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 1e-160
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 1e-144
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 1e-115
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 1e-108
3eoq_A406 Putative zinc protease; two similar domains of bet 3e-94
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 7e-57
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 1e-56
3gwb_A434 Peptidase M16 inactive domain family protein; pept 5e-50
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 1e-38
3go9_A492 Insulinase family protease; IDP00573, structural g 2e-33
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 3e-18
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 2e-16
3ih6_A197 Putative zinc protease; bordetella pertussis toham 2e-15
2fge_A995 Atprep2;, zinc metalloprotease (insulinase family) 6e-12
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Length = 439 Back     alignment and structure
 Score =  512 bits (1321), Expect = e-180
 Identities = 129/448 (28%), Positives = 215/448 (47%), Gaps = 9/448 (2%)

Query: 54  SPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYE 113
           S  +   +     P  +P    P   + + LPNG+ IAS  + +P + I L++  GS YE
Sbjct: 1   SLKVAPKVKATEAPAGVPP--HPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYE 58

Query: 114 SPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPE 173
           +  + GT+HLL   +  +T+  S  +I R +EA+GG +  +++RE M Y+ + L+  V  
Sbjct: 59  NSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDI 118

Query: 174 MVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLA 233
           ++E L++    P F  WEV     +++ + +    NPQ+ ++E +H+A Y  ALAN L  
Sbjct: 119 LMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYC 178

Query: 234 PESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKS 293
           P+  I ++    L ++V  ++T  RM L   GV H  L  VAE  L+    +       +
Sbjct: 179 PDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLNIRGGLGLSGAK-A 237

Query: 294 VYTGGDYRCQADSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMY 353
            Y GG+ R Q    L H  L  E         +A   +VLQ +LG G        G    
Sbjct: 238 KYHGGEIREQNGDSLVHAALVAE--SAAIGSAEANAFSVLQHVLGAG---PHVKRGSNAT 292

Query: 354 SRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGE 413
           S LY+ V     Q    SAF+  Y+ SG+FG    + +      I  A  ++ ++A  G 
Sbjct: 293 SSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQ-GN 351

Query: 414 VDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIA 473
           +    +  AK   K+  LM++ES     +++G Q L  G   P    L+ ++ V   D+ 
Sbjct: 352 LSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVI 411

Query: 474 SVAQKLLSSPLTMASYGDVINVPSYDAV 501
           + A+K +S   +MA+ G++ + P  D +
Sbjct: 412 NAAKKFVSGRKSMAASGNLGHTPFIDEL 439
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Length = 475 Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Length = 446 Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Length = 443 Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Length = 431 Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Length = 421 Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Length = 352 Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Length = 406 Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Length = 425 Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Length = 424 Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Length = 434 Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Length = 445 Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Length = 492 Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 939 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Length = 990 Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Length = 197 Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 995 Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 995 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query508
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 100.0
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 100.0
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 100.0
3eoq_A406 Putative zinc protease; two similar domains of bet 100.0
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 100.0
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 100.0
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 100.0
3gwb_A434 Peptidase M16 inactive domain family protein; pept 100.0
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 100.0
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 100.0
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 100.0
3go9_A492 Insulinase family protease; IDP00573, structural g 100.0
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 100.0
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 100.0
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 100.0
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 100.0
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 100.0
1q2l_A939 Protease III; hydrolase; 2.20A {Escherichia coli s 100.0
2fge_A995 Atprep2;, zinc metalloprotease (insulinase family) 100.0
3cww_A990 Insulysin, insulin-degrading enzyme, insulinase; A 100.0
3s5m_A1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 99.97
3ih6_A197 Putative zinc protease; bordetella pertussis toham 99.91
3ih6_A197 Putative zinc protease; bordetella pertussis toham 98.28
3amj_B 424 Zinc peptidase inactive subunit; alpha/beta, zinc 97.96
3hdi_A 421 Processing protease; CAGE structure, M16B peptidas 97.86
3eoq_A 406 Putative zinc protease; two similar domains of bet 97.84
3gwb_A 434 Peptidase M16 inactive domain family protein; pept 97.84
3d3y_A 425 Uncharacterized protein; APC29635, conserved prote 97.84
3cx5_A 431 Cytochrome B-C1 complex subunit 1, mitochondrial; 97.83
3cx5_B 352 Cytochrome B-C1 complex subunit 2, mitochondrial; 97.77
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 97.69
1pp9_A 446 Ubiquinol-cytochrome C reductase complex core Pro 97.69
1pp9_B 439 Ubiquinol-cytochrome C reductase complex core Pro 97.64
3ami_A 445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 97.57
1hr6_A 475 Alpha-MPP, mitochondrial processing peptidase alph 97.56
3go9_A492 Insulinase family protease; IDP00573, structural g 96.38
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
Probab=100.00  E-value=1.6e-63  Score=520.14  Aligned_cols=428  Identities=35%  Similarity=0.552  Sum_probs=394.5

Q ss_pred             CceEEEEcCCCcEEEEeeCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeEEeec
Q 010516           77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS  156 (508)
Q Consensus        77 ~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~  156 (508)
                      +.++.++|+||++|++.+.+.+.+++++++++|+.+|++...|++||++||+|+||.+++..++.+.++..|++++++++
T Consensus         4 ~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~t~   83 (475)
T 1hr6_A            4 DNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSS   83 (475)
T ss_dssp             TCCEEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEEC
T ss_pred             CCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEEEc
Confidence            57899999999999998888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEEEEEcccCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC-CCCCCCCCCh
Q 010516          157 REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPE  235 (508)
Q Consensus       157 ~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~~~~~  235 (508)
                      ++++.|++++++++++.+|+++.+++.+|.|++++|+++|+.+.+|+++..++|...+.+.++..+|++ +|+++.+|+.
T Consensus        84 ~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~  163 (475)
T 1hr6_A           84 RENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPR  163 (475)
T ss_dssp             SSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCG
T ss_pred             cCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence            999999999999999999999999999999999999999999999999988999999999999999987 9999999999


Q ss_pred             HHhccCCHHHHHHHHHhhcCCCCeEEEEcCCCHHHHHHHHHhhhcCCCCCCCC-CCCCCccCCCeeEee------CCCCc
Q 010516          236 SAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPR-EEPKSVYTGGDYRCQ------ADSGL  308 (508)
Q Consensus       236 ~~l~~l~~~~l~~f~~~~~~~~~~~l~i~Gv~~e~l~~~~~~~~~~lp~~~~~-~~~~~~~~~~~~~~~------~~~~~  308 (508)
                      +.|++++.++|++||+++|+|+||+++++|+++++++++++++|+.||....+ ..+.+.+.++..++.      .+.++
T Consensus       164 ~~l~~it~~~l~~f~~~~y~p~n~~l~v~G~d~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (475)
T 1hr6_A          164 GLIPSISKYYLLDYRNKFYTPENTVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGESCIPPAPVFGNLPEL  243 (475)
T ss_dssp             GGGGGCCHHHHHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEECCCCCCSSSCCC
T ss_pred             HHHhhcCHHHHHHHHHHhCCcccEEEEEeCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCcCCeEEEecccccCCCccc
Confidence            99999999999999999999999999999999999999999999999865443 222334445444443      56788


Q ss_pred             eEEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecCCCCcceEEEEEE
Q 010516          309 THFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGT  388 (508)
Q Consensus       309 ~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~~~~~g~~~i~~~  388 (508)
                      +++.++|++++ | ++++.+++.|++.||+++++||+|||||||+++||++||++.|++|+++++...+.+.|.|+|+++
T Consensus       244 ~~v~~~~~~~~-~-~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i~~~  321 (475)
T 1hr6_A          244 FHIQIGFEGLP-I-DHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLS  321 (475)
T ss_dssp             EEEEEEEECCC-T-TCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEEEEEE
T ss_pred             eEEEEEEecCC-C-CCccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEEEEEE
Confidence            99999999776 4 678999999999999999999999999999999999999999999999999887778899999999


Q ss_pred             eCcchHHHHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCCCHHHHHHHHhc
Q 010516          389 TGSDFVSKAIDLAARELISVATP--GEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEG  466 (508)
Q Consensus       389 ~~p~~~~~~~~~~~~~l~~l~~~--~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~  466 (508)
                      ++|+++.++++.+.+++.++.+.  ++++++||+++|+.++.++....+++..+++.++++++.+|.+.+.+++.+.|++
T Consensus       322 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~  401 (475)
T 1hr6_A          322 CIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIED  401 (475)
T ss_dssp             ECGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCCCHHHHHHHHHT
T ss_pred             eCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHc
Confidence            99999999999999999998751  2599999999999999999999999999999999987667877778889999999


Q ss_pred             CCHHHHHHHHHHHhcC----------CceEEEEcCCCCCCCHHHHHhHhh
Q 010516          467 VTAKDIASVAQKLLSS----------PLTMASYGDVINVPSYDAVSSKFK  506 (508)
Q Consensus       467 vT~~Di~~~a~~~l~~----------~~~~~~~G~~~~~p~~~~~~~~~~  506 (508)
                      ||++||++++++++..          +++++++|+...+|+++++.+.+.
T Consensus       402 vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~  451 (475)
T 1hr6_A          402 LKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDRGSFGDVENVLKAYG  451 (475)
T ss_dssp             CCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCGGGGCCHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHhhhccccccccCCCcEEEEECCcccCcCHHHHHHHhc
Confidence            9999999999999974          789999999989999999988775
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 508
d1ppjb2204 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2e-43
d1hr6b2217 d.185.1.1 (B:246-462) Mitochondrial processing pep 8e-40
d1hr6a2237 d.185.1.1 (A:234-470) Mitochondrial processing pep 3e-39
d1ppja2209 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 2e-38
d1ppjb1219 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 4e-36
d3cx5a2218 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 5e-36
d1hr6a1220 d.185.1.1 (A:14-233) Mitochondrial processing pept 3e-29
d3cx5b1202 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 2e-28
d1ppja1232 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 5e-25
d1hr6b1222 d.185.1.1 (B:24-245) Mitochondrial processing pept 2e-23
d3cx5a1213 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 4e-22
d1q2la4240 d.185.1.1 (A:24-263) Protease III {Escherichia col 8e-17
d3cx5b2150 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 9e-17
d2fgea4257 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 7e-14
d2fgea2196 d.185.1.1 (A:798-993) Presequence protease 1, PREP 3e-06
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 204 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Cytochrome bc1 core subunit 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  150 bits (380), Expect = 2e-43
 Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 6/210 (2%)

Query: 292 KSVYTGGDYRCQADSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKG 351
           K+ Y GG+ R Q    L H  L  E         +A   +VLQ +LG G     G     
Sbjct: 1   KAKYHGGEIREQNGDSLVHAALVAESAA--IGSAEANAFSVLQHVLGAGPHVKRGS---N 55

Query: 352 MYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATP 411
             S LY+ V     Q    SAF+  Y+ SG+FG    + +      I  A  ++ ++A  
Sbjct: 56  ATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIA-Q 114

Query: 412 GEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKD 471
           G +    +  AK   K+  LM++ES     +++G Q L  G   P    L+ ++ V   D
Sbjct: 115 GNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADAD 174

Query: 472 IASVAQKLLSSPLTMASYGDVINVPSYDAV 501
           + + A+K +S   +MA+ G++ + P  D +
Sbjct: 175 VINAAKKFVSGRKSMAASGNLGHTPFIDEL 204
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 217 Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237 Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 209 Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 219 Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 218 Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 220 Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 202 Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 232 Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213 Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Length = 240 Back     information, alignment and structure
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150 Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 257 Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 196 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query508
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 100.0
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 100.0
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 100.0
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 100.0
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 100.0
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 100.0
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 100.0
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 100.0
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 99.98
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 99.97
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 99.96
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 99.96
d2fgea4257 Presequence protease 1, PREP1 {Thale cress (Arabid 99.94
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 99.9
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 99.81
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 99.7
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 99.3
d3cx5b2150 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 99.12
d2fgea3268 Presequence protease 1, PREP1 {Thale cress (Arabid 98.5
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 98.46
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 98.45
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 98.42
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 98.36
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 98.3
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 98.3
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 98.26
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 98.1
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 98.06
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 98.03
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 98.01
d1q2la3240 Protease III {Escherichia coli [TaxId: 562]} 97.91
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 97.82
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 97.8
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 97.65
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 97.12
d2fgea4257 Presequence protease 1, PREP1 {Thale cress (Arabid 95.56
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 93.82
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Mitochondrial processing peptidase (MPP) alpha chain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.6e-36  Score=276.91  Aligned_cols=212  Identities=33%  Similarity=0.529  Sum_probs=205.2

Q ss_pred             CceEEEEcCCCcEEEEeeCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeEEeec
Q 010516           77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS  156 (508)
Q Consensus        77 ~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~  156 (508)
                      ..+++++|+||++|++++.+++.+.|++++++|+.+|++...|++|+++||+++||.+++..++.+.++..|+.++++++
T Consensus         4 ~~~~~~~L~NGl~v~~~~~~~~~~~v~l~~~~G~~~e~~~~~G~a~ll~~ll~~gt~~~~~~~~~~~~~~~g~~~~~~~~   83 (220)
T d1hr6a1           4 DNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSS   83 (220)
T ss_dssp             TCCEEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEEC
T ss_pred             CCceEEEcCCCCEEEEEeCCCCEEEEEEEEcccccccCCCCchHHHHHHHHHhccccccchHHHHHHHHHhcchhhhccc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEEEEEcccCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC-CCCCCCCCCh
Q 010516          157 REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPE  235 (508)
Q Consensus       157 ~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~~~~~  235 (508)
                      .+++.|.+++++++++.+|+++.+.+.+|.|++++|+++|..+..+++...++|...+.+.++..+|++ +|+++..|+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~ll~~~l~~p~~~~~~~~~ek~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~g~~  163 (220)
T d1hr6a1          84 RENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPR  163 (220)
T ss_dssp             SSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCG
T ss_pred             ccceeeeccccccccchhhhhhhHhhhcccchhhhhhhhcchhhhhhhhhhccchhhhhhhhccccccccCCcccccccH
Confidence            999999999999999999999999999999999999999999999999999999999999999999987 9999999999


Q ss_pred             HHhccCCHHHHHHHHHhhcCCCCeEEEEcCCCHHHHHHHHHhhhcCCCCCCCC
Q 010516          236 SAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPR  288 (508)
Q Consensus       236 ~~l~~l~~~~l~~f~~~~~~~~~~~l~i~Gv~~e~l~~~~~~~~~~lp~~~~~  288 (508)
                      +.|++++.++|++||+++|.|+||+++|+|+++++++++++++|++||+..+|
T Consensus       164 ~~i~~it~~dl~~f~~~~y~~~n~~l~i~G~~~~~~~~~i~~~fg~~~~~~~p  216 (220)
T d1hr6a1         164 GLIPSISKYYLLDYRNKFYTPENTVAAFVGVPHEKALELTGKYLGDWQSTHPP  216 (220)
T ss_dssp             GGGGGCCHHHHHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHHHTTCCCCCCC
T ss_pred             HHHhhCCHHHHHHHHHHhCCcccEEEEEECCCHHHHHHHHHHHhcCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999987654
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la3 d.185.1.1 (A:264-503) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure