Citrus Sinensis ID: 010542

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------
Protein Sequence
MDSASRSNRQLRRALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGELDLFQPVMGEETPISVPFLISRL
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHcccccccccccccEEEEcccHHHHHHHHHHHHccccEEEEEEccccccEEEEcccccEEEccccEEEEcccccccHHHHHHHHccccEEEcccccEEEEccccccEEEHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccEEEEEEEcccEEEEEccccEEEEcEEEEcccHHHHHcccccccccccHHHHHHHHHccccEEEEEEEEccccccccccccEEEccccccEEEEEEccccccccEEEEEEccHHHHHHHcccHHHHHHHHHHHHHHHccccccccEEEEcccccccccccccccccccccHHHHHHHHcccccEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHcccccccccEEEEEccEHHHHHHHHHHHHcccEEEEEccccccEccccEEcccccEEcccccEccccccccHHHHHHHHccccEEEEcccccEEEEEcccccccccccHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccHHEEEccccccccccccccccccccHHHHHHHHHccccEEEccEEEEEEEcccEEEEEEccccEEEEcEEEEcccHHHHHHcccEEEccccHHHHHHHHHcEEEcEEEEEEEcccccccccccEEEEccccccEEEEEcccccccccEEEEEEcHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccEEEcccccccccccccEEEcEccccHHHHHHHHccEccEEEccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHccccccccccccccEEccc
Coil and Loop (DISEMBL)
MDSASRSNRQLRRALCysnnagkgqarspsvIVIGAGMAGVAAARALHDASFKVVLLEsrdrvggrvhtdysfgfpvdlgaswlhgvcqenplapvisrlglplyrtsgdnsvlydhdleSRVLKTVVVSLIQANLCYALfdmdgnqvpqELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVfdrrpelrlEGLAHKVLQWYLCRMEGWFAADAetislkswdkeellpgghglmvrgyLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVlkartikfeprlpdwkeAAIDDLGVGIENKIIMHFdkvfwpnveFLGVVSDTSYGCSYFLNLHKATGHCVlvympagqlaRDIEKMSDEAAANFAFTQLkkilpdasspIQYLVShwgtdanslgsysydtvgkshdlyerlripvdnlffageatsmsypgsvhgafstglMAAEDCRMRVLERygeldlfqpvmgeetpisVPFLISRL
Flexible Loop (DISEMBL)
mdsasrsnrqLRRALCysnnagkgqarsPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKEtdkvreehdedmsiqRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVlkartikfeprlpdwkEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGEldlfqpvmgeetpisvpflisrl
Low Complexity Region (SEG)
MDSASRSNRQLRRALCYSNNAGKGQARSPSvivigagmagvaaaraLHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGELDLFQPVMGEETPISVPFLISRL
Disordered region (IsUnstruct)
*****************************SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESIL***************IQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGELDLFQPVMGEETPISVPFL****
Disordered Region (DISOPRED)
******************************VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYG***************SVPFLISRL
Disordered Region (DISEMBL)
**********LRRALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDK********MSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGELDLFQPVMGEETPISVPFLISRL
Disordered Region (DISPRO)
*******NRQLRRALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGELDLFQPVMGEETPISVPF*I***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSASRSNRQLRRALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGELDLFQPVMGEETPISVPFLISRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	507	2.2.26 [Sep-21-2011]
Q9SKX5	490	Probable polyamine oxidas	yes	no	0.966	1.0	0.781	0.0
Q9LYT1	488	Polyamine oxidase 3 OS=Ar	no	no	0.962	1.0	0.767	0.0
Q8H191	497	Probable polyamine oxidas	no	no	0.915	0.933	0.621	1e-177
Q9CAE3	789	Lysine-specific histone d	no	no	0.806	0.518	0.334	2e-49
Q8VXV7	844	Lysine-specific histone d	no	no	0.854	0.513	0.334	4e-47
Q9LID0	746	Lysine-specific histone d	no	no	0.812	0.552	0.347	9e-47
Q6YYZ1	763	Lysine-specific histone d	no	no	0.779	0.517	0.327	1e-46
Q6ZQ88	853	Lysine-specific histone d	yes	no	0.857	0.509	0.301	1e-45
O60341	852	Lysine-specific histone d	yes	no	0.865	0.515	0.298	1e-45
Q6Z690	849	Lysine-specific histone d	no	no	0.796	0.475	0.300	2e-40

>sp|Q9SKX5|PAO2_ARATH Probable polyamine oxidase 2 OS=Arabidopsis thaliana GN=PAO2 PE=2 SV=1

 Score =  810 bits (2092), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/507 (78%), Positives = 440/507 (86%), Gaps = 17/507 (3%)

Query: 1   MDSASRSNRQLRRALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60
           M+S   S+RQ+RRA C+S    + + RSPSVIVIG G  G++AAR L DASF+V++LESR
Sbjct: 1   MESRKNSDRQMRRANCFSAGE-RMKTRSPSVIVIGGGFGGISAARTLQDASFQVMVLESR 59

Query: 61  DRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLE 120
           DR+GGRVHTDYSFGFPVDLGASWLHGVC+ENPLAPVI RLGLPLYRTSGDNSVLYDHDLE
Sbjct: 60  DRIGGRVHTDYSFGFPVDLGASWLHGVCKENPLAPVIGRLGLPLYRTSGDNSVLYDHDLE 119

Query: 121 SRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSI 180
           S                YALFDMDGNQVPQELVT++G  FE IL+E +KVR+E D D+SI
Sbjct: 120 S----------------YALFDMDGNQVPQELVTQIGVTFERILEEINKVRDEQDADISI 163

Query: 181 QRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLM 240
            +A SIVF R+PELRLEGLAH VLQWY+CRMEGWFAADAETIS K WD+EELLPGGHGLM
Sbjct: 164 SQAFSIVFSRKPELRLEGLAHNVLQWYVCRMEGWFAADAETISAKCWDQEELLPGGHGLM 223

Query: 241 VRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKAR 300
           VRGY PVINTLAKGLDIR+GHRVTKI R Y GVKVT E G+TFVADA V+AVPLGVLK+ 
Sbjct: 224 VRGYRPVINTLAKGLDIRVGHRVTKIVRRYNGVKVTTENGQTFVADAAVIAVPLGVLKSG 283

Query: 301 TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHK 360
           TIKFEP+LP+WK+ AI+DLGVGIENKII+HF+KVFWP VEFLGVV++TSYGCSYFLNLHK
Sbjct: 284 TIKFEPKLPEWKQEAINDLGVGIENKIILHFEKVFWPKVEFLGVVAETSYGCSYFLNLHK 343

Query: 361 ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSL 420
           ATGH VLVYMPAGQLA+DIEKMSDEAAANFA  QL++ILPDA  P+QYLVS WG+D NS+
Sbjct: 344 ATGHPVLVYMPAGQLAKDIEKMSDEAAANFAVLQLQRILPDALPPVQYLVSRWGSDVNSM 403

Query: 421 GSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 480
           GSYSYD VGK HDLYERLR+PVDNLFFAGEATS S+PGSVHGA+STGLMAAEDCRMRVLE
Sbjct: 404 GSYSYDIVGKPHDLYERLRVPVDNLFFAGEATSSSFPGSVHGAYSTGLMAAEDCRMRVLE 463

Query: 481 RYGELDLFQPVMGEETPISVPFLISRL 507
           RYGELDLFQPVMGEE P SVP LISRL
Sbjct: 464 RYGELDLFQPVMGEEGPASVPLLISRL 490

Flavoenzyme that catalyzes the oxidation of the secondary amino group of polyamines.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 5EC: .EC: 3EC: .EC: -

>sp|Q9LYT1|PAO3_ARATH Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO3 PE=1 SV=1

 Score =  792 bits (2046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/507 (76%), Positives = 429/507 (84%), Gaps = 19/507 (3%)

Query: 1   MDSASRSNRQLRRALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60
           M+S  ++NRQLR+A+C S +    + RSPSVIVIG GMAG++AAR L DASF+VV+LESR
Sbjct: 1   MESGGKTNRQLRKAICVSTDEKMKKKRSPSVIVIGGGMAGISAARTLQDASFQVVVLESR 60

Query: 61  DRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLE 120
           DR+GGRVHTDYSFGFPVDLGASWLHGVC+ENPLA VI RLGLPLYRTSGDNSVLYDHDLE
Sbjct: 61  DRIGGRVHTDYSFGFPVDLGASWLHGVCKENPLAAVIGRLGLPLYRTSGDNSVLYDHDLE 120

Query: 121 SRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSI 180
           S                YALFD  GNQV QELVTKVGE FE IL+E  KVR+E DEDMSI
Sbjct: 121 S----------------YALFDKAGNQVSQELVTKVGENFEHILEEICKVRDEQDEDMSI 164

Query: 181 QRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLM 240
            +A SIVF R PELRLEGLAH VLQWYLCRMEGWFAADAETIS K WD+EELLPGGHGLM
Sbjct: 165 AQAFSIVFKRNPELRLEGLAHNVLQWYLCRMEGWFAADAETISAKCWDQEELLPGGHGLM 224

Query: 241 VRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKAR 300
           VRGY PVINTL+KGLDIRL HR+TKI+R Y GVKVT E G TFVADA V+A+PLGVLK+ 
Sbjct: 225 VRGYRPVINTLSKGLDIRLSHRITKISRRYSGVKVTTEKGDTFVADAAVIALPLGVLKSG 284

Query: 301 TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHK 360
            I FEP+LP WK+ AI+DLGVGIENKII++FD VFWPNVEFLGVV++TSYGCSYFLNLHK
Sbjct: 285 MITFEPKLPQWKQEAINDLGVGIENKIILNFDNVFWPNVEFLGVVAETSYGCSYFLNLHK 344

Query: 361 ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSL 420
           AT H VLVYMPAGQLARDIEK SDEAAANFAF+QL+KILPDASSPI YLVS WG+D NSL
Sbjct: 345 ATSHPVLVYMPAGQLARDIEKKSDEAAANFAFSQLQKILPDASSPINYLVSRWGSDINSL 404

Query: 421 GSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 480
           GSYSYD V K HDLYERLR+P+DNLFFAGEATS SYPGSVHGA+STG++AAEDCRMRVLE
Sbjct: 405 GSYSYDIVNKPHDLYERLRVPLDNLFFAGEATSSSYPGSVHGAYSTGVLAAEDCRMRVLE 464

Query: 481 RYGELDLFQPVMGEETPISVPFLISRL 507
           RYGEL   +  M EE P SVP LISR+
Sbjct: 465 RYGEL---EHEMEEEAPASVPLLISRM 488

Flavoenzyme that catalyzes the sequential oxidation of spermine to spermidine, and of spermidine to putrescine. Substrate preference is spermidine > spermine > N(1)-acetylspermidine > N(1)-acetylspermine. No activity detected when diamines (agmatine, cadaverine or putrescine) or N(8)-acetylspermidine are used as substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: 7

>sp|Q8H191|PAO4_ARATH Probable polyamine oxidase 4 OS=Arabidopsis thaliana GN=PAO4 PE=1 SV=1

 Score =  622 bits (1603), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 302/486 (62%), Positives = 364/486 (74%), Gaps = 22/486 (4%)

Query: 28  SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGV 87
            PSVIVIG+G++G+AAAR L +ASFKV +LESRDR+GGR+HTDYSFG PVD+GASWLHGV
Sbjct: 28  QPSVIVIGSGISGLAAARNLSEASFKVTVLESRDRIGGRIHTDYSFGCPVDMGASWLHGV 87

Query: 88  CQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQ 147
             ENPLAP+I RLGL LYRTSGD+S+LYDHDLES                Y LFDM GN+
Sbjct: 88  SDENPLAPIIRRLGLTLYRTSGDDSILYDHDLES----------------YGLFDMHGNK 131

Query: 148 VPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWY 207
           +P +LVTKVG+AF+ IL+ET+K+R+E   DMS+ + ISIV DR PELR EG+A++VLQWY
Sbjct: 132 IPPQLVTKVGDAFKRILEETEKIRDETANDMSVLQGISIVLDRNPELRQEGMAYEVLQWY 191

Query: 208 LCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKIT 267
           LCRME WFA DA  ISLK WD++E L GGHGLMV+GY PVI T+AK LDIRL HRVTK+ 
Sbjct: 192 LCRMEAWFAVDANLISLKCWDQDECLSGGHGLMVQGYEPVIRTIAKDLDIRLNHRVTKVV 251

Query: 268 RHYIG-VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENK 326
           R     V V VEGG  FVADAV++ VP+GVLKA  I+FEP LP WK +AI  LGVG ENK
Sbjct: 252 RTSNNKVIVAVEGGTNFVADAVIITVPIGVLKANLIQFEPELPQWKTSAISGLGVGNENK 311

Query: 327 IIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEA 386
           I + FD+ FWPNVEFLG+V+ TSY C YFLNLHKATGH VLVYM AG LA+D+EK+SDEA
Sbjct: 312 IALRFDRAFWPNVEFLGMVAPTSYACGYFLNLHKATGHPVLVYMAAGNLAQDLEKLSDEA 371

Query: 387 AANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLF 446
            ANF   QLKK+ PDA  P QYLV+ WGTD N+LG Y+YD VG   DLY RL  PVDN+F
Sbjct: 372 TANFVMLQLKKMFPDAPDPAQYLVTRWGTDPNTLGCYAYDVVGMPEDLYPRLGEPVDNIF 431

Query: 447 FAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGELDLFQPV--MGEETPI---SVP 501
           F GEA ++ + GS HGAF  G+ A+++C+  + ER G  +  + V  MG    +   +VP
Sbjct: 432 FGGEAVNVEHQGSAHGAFLAGVSASQNCQRYIFERLGAWEKLKLVSLMGNSDILETATVP 491

Query: 502 FLISRL 507
             ISR+
Sbjct: 492 LQISRM 497

Flavoenzyme that catalyzes the oxidation of the secondary amino group of spermine. No activity detected when spermidine, putrescine or N(1)-acetylspermine are used as substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q9CAE3|LDL3_ARATH Lysine-specific histone demethylase 1 homolog 3 OS=Arabidopsis thaliana GN=FLD PE=1 SV=1

 Score =  196 bits (499), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 160/478 (33%), Positives = 228/478 (47%), Gaps = 69/478 (14%)

Query: 25  QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY----SFGFPVDLG 80
           Q+   SVI++GAG++G+AAAR L    FKV +LE R R GGRV+T        G   DLG
Sbjct: 181 QSSKSSVIIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLG 240

Query: 81  ASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYAL 140
            S L G    NPL  +  +LG  LY+                            + C  L
Sbjct: 241 GSVLTGTLG-NPLGIIARQLGSSLYKVR--------------------------DKC-PL 272

Query: 141 FDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLA 200
           + +DG  V  ++  KV  AF  +L +  K+R+    D+S+  ++    +   ++    +A
Sbjct: 273 YRVDGKPVDPDVDIKVEVAFNQLLDKASKLRQLMG-DVSMDVSLGAALETFRQVSGNDVA 331

Query: 201 HK---VLQWYLCRMEGWFAADAETISLKSWDKEE---------LLPGGHGLMVRGYLPVI 248
            +   +  W+L  +E   A     +SL  WD+++          LPGG+G +V+      
Sbjct: 332 TEEMGLFNWHLANLEYANAGLVSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQ------ 385

Query: 249 NTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRL 308
             LA+ + I     V  I     GVKVT  G + +  D V+  VPLGVLK  +IKF P L
Sbjct: 386 -ALAENVPILYEKTVQTIRYGSNGVKVTA-GNQVYEGDMVLCTVPLGVLKNGSIKFVPEL 443

Query: 309 PDWKEAAIDDLGVGIENKIIMHFDKVFWP-NVEFLG-VVSDTSYGCSYFLNLHKA--TGH 364
           P  K   I  LG G+ NK+ M F  VFW  +++  G +  D +Y   +FL    A   G 
Sbjct: 444 PQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFYSYAPVAGG 503

Query: 365 CVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKI-------LPDASSPIQYLVSHWGTDA 417
            +L+ + AG+ A   E M    A       L+ I       +PD   P+Q + + WG D 
Sbjct: 504 ALLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPD---PLQTVCTRWGGDP 560

Query: 418 NSLGSYSYDTVGKSHDLYERLRIPVDN--LFFAGEATSMSYPGSVHGAFSTGLMAAED 473
            SLGSYS   VG S D Y+ L   V +  LFFAGEAT+  YP ++HGAF TGL  A +
Sbjct: 561 FSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAAN 618

Probable histone demethylase that promotes flowering independently of the photoperiod and vernalization pathways by repressing FLOWERING LOCUS C (FLC), a floral repressor that blocks the transition from vegetative to reproductive development. Probably mediates histone H3 'Lys-4' demethylation at FLC locus. Seems to act in partial redundancy with LDL1 and LDL2 to repress FLC expression. Required for histone H4 deacetylation of FLC locus. May be a component of the histone deacetylase complex.

Arabidopsis thaliana (taxid: 3702)

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>sp|Q8VXV7|LDL1_ARATH Lysine-specific histone demethylase 1 homolog 1 OS=Arabidopsis thaliana GN=LDL1 PE=1 SV=1

 Score =  189 bits (480), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 161/482 (33%), Positives = 232/482 (48%), Gaps = 49/482 (10%)

Query: 29  PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFP-----VDLGASW 83
           P+V+V+GAG+AG+ AAR L    F+V++LE RDR GGRV T    G        D+G S 
Sbjct: 266 PNVVVVGAGLAGLVAARQLLSMGFRVLVLEGRDRPGGRVKTRKMKGGDGVEAMADVGGSV 325

Query: 84  LHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDM 143
           L G+   NPL  +  +LGLPL++   D   LY  + E  +    V S I+A+        
Sbjct: 326 LTGI-NGNPLGVLARQLGLPLHKVR-DICPLYLPNGE--LADASVDSKIEASF------- 374

Query: 144 DGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV 203
                  +L+ +V +  +S+++E   V     E +   R +  V + + E  L       
Sbjct: 375 ------NKLLDRVCKLRQSMIEENKSVDVPLGEALETFRLVYGVAEDQQERML------- 421

Query: 204 LQWYLCRMEGWFAADAETISLKSWDKEEL--LPGGHGLMVRGYLPVINTLAKGLDIRLGH 261
           L W+L  +E   A     +S+  WD+++   + G H  +  G    ++ LA+ L I  G 
Sbjct: 422 LDWHLANLEYANATLLGNLSMAYWDQDDPYEMGGDHCFIPGGNEIFVHALAENLPIFYGS 481

Query: 262 RVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGV 321
            V  I     GV V   G K F  D  +  VPLGVLK  +I+F P LP  K+ AI  LG 
Sbjct: 482 TVESIRYGSNGVLVYT-GNKEFHCDMALCTVPLGVLKKGSIEFYPELPHKKKEAIQRLGF 540

Query: 322 GIENKIIMHFDKVFW-PNVEFLG-VVSDTSYGCSYFL--NLHKATGHCVLVYMPAGQLAR 377
           G+ NK+ M F   FW   ++  G +  D S    +FL  +    +G  +LV + AG  A 
Sbjct: 541 GLLNKVAMLFPCNFWGEEIDTFGRLTEDPSTRGEFFLFYSYSSVSGGPLLVALVAGDAAE 600

Query: 378 DIEKMSDEAAANFAFTQLKKI-------LPDASSPIQYLVSHWGTDANSLGSYSYDTVGK 430
             E +S   +       L+ I       +PD   P+Q L S WG D  S GSYSY  VG 
Sbjct: 601 RFETLSPTDSVKRVLQILRGIYHPKGIVVPD---PVQALCSRWGQDKFSYGSYSYVAVGS 657

Query: 431 SHDLYERLRIPVDN--LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGELDLF 488
           S D Y+ L   V +  +FFAGEAT+  YP ++HGAF +G+  A +  +RV  R       
Sbjct: 658 SGDDYDILAESVGDGRVFFAGEATNRQYPATMHGAFLSGMREAANI-LRVARRRASSSAL 716

Query: 489 QP 490
            P
Sbjct: 717 NP 718

Probable histone demethylase that reduces the levels of histone H3 'Lys-4' methylation in chromatin of the floral repressor FLOWERING LOCUS C (FLC) and the sporophytically silenced floral repressor FWA. Seems to act in partial redundancy with FLOWERING LOCUS D (FLD) to repress FLC expression. Required for cytosine methylation of FWA.

Arabidopsis thaliana (taxid: 3702)

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>sp|Q9LID0|LDL2_ARATH Lysine-specific histone demethylase 1 homolog 2 OS=Arabidopsis thaliana GN=LDL2 PE=2 SV=1

 Score =  188 bits (477), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 160/460 (34%), Positives = 233/460 (50%), Gaps = 48/460 (10%)

Query: 30  SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFG----FPVDLGASWLH 85
           SVIV+GAG+AG+AAAR L    FKV++LE R R GGRV+T    G      V+LG S + 
Sbjct: 161 SVIVVGAGLAGLAAARQLLSFGFKVLVLEGRSRPGGRVYTQKMGGKDRFAAVELGGSVIT 220

Query: 86  GVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDG 145
           G+   NPL  +  +L +PL++   DN  LY+ +        +V  +  +N+ +       
Sbjct: 221 GL-HANPLGVLARQLSIPLHKVR-DNCPLYNSE------GVLVDKVADSNVEFGF----- 267

Query: 146 NQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQ 205
                +L+ KV E  E +     K+     E +   R +  V     E        K+  
Sbjct: 268 ----NKLLDKVTEVREMMEGAAKKI--SLGEVLETLRVLYGVAKDSEE-------RKLFD 314

Query: 206 WYLCRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRLGHRV 263
           W+L  +E   A     +S   WD+++   + G H  +  G   +IN LA+GL I  G  V
Sbjct: 315 WHLANLEYANAGCLSNLSAAYWDQDDPYEMGGDHCFLAGGNWRLINALAEGLPIIYGKSV 374

Query: 264 TKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGI 323
             I     GV+V + G + F AD ++  VPLGVLK R+IKFEP LP  K+AAID LG G+
Sbjct: 375 DTIKYGDGGVEV-ISGSQIFQADMILCTVPLGVLKKRSIKFEPELPRRKQAAIDRLGFGL 433

Query: 324 ENKIIMHFDKVFWPN-VEFLGVVSDTSYGCSYFL---NLHKATGHCVLVYMPAGQLARDI 379
            NK+ M F  VFW + ++  G ++++S     F      H  +G   LV + AG+ A+  
Sbjct: 434 LNKVAMLFPSVFWGDELDTFGCLNESSINRGEFFLFYAYHTVSGGPALVALVAGEAAQRF 493

Query: 380 EKMSDEAAANFAFTQLKKI-------LPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSH 432
           E        +    +L+ I       +PD   PIQ + + WG+D  S GSYS+  VG S 
Sbjct: 494 ECTEPSVLLHRVLKKLRGIYGPKGVVVPD---PIQTVCTRWGSDPLSYGSYSHVRVGSSG 550

Query: 433 DLYERLRIPVDN-LFFAGEATSMSYPGSVHGAFSTGLMAA 471
             Y+ L   V N LFFAGEAT+  +P ++HGA+ +GL  A
Sbjct: 551 VDYDILAESVSNRLFFAGEATTRQHPATMHGAYLSGLREA 590

Probable histone demethylase that reduces the levels of histone H3 'Lys-4' methylation in chromatin of the floral repressor FLOWERING LOCUS C (FLC) and the sporophytically silenced floral repressor FWA. Seems to act in partial redundancy with FLOWERING LOCUS D (FLD) to repress FLC expression. Required for cytosine methylation of FWA.

Arabidopsis thaliana (taxid: 3702)

EC: 1

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>sp|Q6YYZ1|LDL2_ORYSJ Lysine-specific histone demethylase 1 homolog 2 OS=Oryza sativa subsp. japonica GN=Os08g0143400 PE=2 SV=1

 Score =  187 bits (475), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 146/446 (32%), Positives = 219/446 (49%), Gaps = 51/446 (11%)

Query: 45  RALHDASFKVVLLESRDRVGGRVHTDYSFG--FPVDLGASWLHGVCQENPLAPVISRLGL 102
           R L     +V++LE R R GGRV+T +  G    V+LG S + G+   NPL  +  +LG+
Sbjct: 179 RQLLRFGLRVLVLEGRARPGGRVYTTHLGGDQAAVELGGSVITGI-HTNPLGVLARQLGI 237

Query: 103 PLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFES 162
           PL++   D+  LY H                          DG  V  +L   +   F +
Sbjct: 238 PLHKVR-DSCPLYHH--------------------------DGRTVDMKLDRSMDLVFNT 270

Query: 163 ILKETDKVRE---EHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADA 219
           +L+   ++RE   +  E +S+   I     R  ++       +VL W+L  +E   A   
Sbjct: 271 LLEHATRLREYLKKAAEGISLGEGIE-RLRRFYKVAKSVEEREVLDWHLANLEFSNAGCL 329

Query: 220 ETISLKSWDKEEL--LPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTV 277
             +SL  WD+++   + G H  +  G   +++ L  G+ +     V +I     GV +TV
Sbjct: 330 SELSLAHWDQDDQYEMGGDHCFLAGGNARLVHALCDGVPVLYEKTVKRIEHGEDGVSITV 389

Query: 278 EGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW- 336
           EGG+ F AD  +   PLGVLK+R+I FEP LP+ K  AI  LG G+ NK+ M F  VFW 
Sbjct: 390 EGGQVFKADMALCTAPLGVLKSRSIIFEPELPERKLEAIQRLGFGLLNKVAMVFPHVFWD 449

Query: 337 PNVEFLGVVS-DTSYGCSYFL--NLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFT 393
             ++  G ++ + S    +FL  + H  +G  VL+ + AG+ A + EK+    A +    
Sbjct: 450 EEIDTFGCLNKERSKRGEFFLFYSYHTVSGGAVLIALVAGEAALEFEKVDPAVALHRVLG 509

Query: 394 QLKKI-------LPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV-DNL 445
            LK I       +PD   PIQ   + WG+D    GSYS+  VG S   Y+ L   V D L
Sbjct: 510 ILKGIYGPKGVTVPD---PIQSCCTRWGSDPLCSGSYSHIRVGSSGTDYDILAESVNDRL 566

Query: 446 FFAGEATSMSYPGSVHGAFSTGLMAA 471
           FFAGEAT+ +YP ++HGA  +GL  A
Sbjct: 567 FFAGEATNRAYPATMHGALLSGLREA 592

Probable histone demethylase.

Oryza sativa subsp. japonica (taxid: 39947)

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>sp|Q6ZQ88|KDM1A_MOUSE Lysine-specific histone demethylase 1A OS=Mus musculus GN=Kdm1a PE=1 SV=2

 Score =  184 bits (468), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 165/548 (30%), Positives = 247/548 (45%), Gaps = 113/548 (20%)

Query: 31  VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQE 90
           VI+IG+G++G+AAAR L      V LLE+RDRVGGRV T     +  DLGA  + G+   
Sbjct: 282 VIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG- 340

Query: 91  NPLAPVISRLGL---------PLYRTSGD--------------NSVL-----YDHDLESR 122
           NP+A V  ++ +         PLY  +G               N +L       H L+  
Sbjct: 341 NPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFN 400

Query: 123 VLKTVVVSLIQANLCYALFDMDGNQVPQELV------TKVGEAFESILKE----TDKVRE 172
           VL    VSL QA     +  +    V  E +       K  E  + +L +     +K++E
Sbjct: 401 VLNNKPVSLGQA--LEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKE 458

Query: 173 EHDE-----DMSIQRAISIVF---------------------------DRRPELR----- 195
            H +     ++   R I+  F                           ++  EL      
Sbjct: 459 LHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPS 518

Query: 196 ---LEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINT 250
              L     ++L W+   +E   A    T+SLK WD+++     G H  +  GY  V   
Sbjct: 519 DVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVA 578

Query: 251 LAKGLDIRLGHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TI 302
           LA+GLDI+L   V ++     G +V    T    +TF+   DAV+  +PLGVLK +   +
Sbjct: 579 LAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAV 638

Query: 303 KFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYGCS---YFLNL 358
           +F P LP+WK +A+  +G G  NK+++ FD+VFW P+V   G V  T+        F NL
Sbjct: 639 QFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNL 698

Query: 359 HKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTD 416
           +KA    +L+ + AG+ A  +E +SD+         LK I   ++   P + +VS W  D
Sbjct: 699 YKAP---ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRAD 755

Query: 417 ANSLGSYSYDTVGKSHDLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGA 463
             + GSYSY   G S + Y+ +  P+               LFFAGE T  +YP +VHGA
Sbjct: 756 PWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGA 815

Query: 464 FSTGLMAA 471
             +GL  A
Sbjct: 816 LLSGLREA 823

Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me. May play a role in the repression of neuronal genes. Alone, it is unable to demethylate H3K4me on nucleosomes and requires the presence of RCOR1/CoREST to achieve such activity. Also acts as a coactivator of androgen receptor (ANDR)-dependent transcription, by being recruited to ANDR target genes and mediating demethylation of H3K9me, a specific tag for epigenetic transcriptional repression. The presence of PRKCB in ANDR-containing complexes, which mediates phosphorylation of 'Thr-6' of histone H3 (H3T6ph), a specific tag that prevents demethylation H3K4me, prevents H3K4me demethylase activity of KDM1A. Demethylates di-methylated 'Lys-370' of p53/TP53 which prevents interaction of p53/TP53 with TP53BP1 and represses p53/TP53-mediated transcriptional activation (By similarity). Demethylates and stabilizes the DNA methylase DNMT1. Required for gastrulation during embryogenesis. Component of a RCOR/GFI/KDM1A/HDAC complex that suppresses, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development.

Mus musculus (taxid: 10090)

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>sp|O60341|KDM1A_HUMAN Lysine-specific histone demethylase 1A OS=Homo sapiens GN=KDM1A PE=1 SV=2

 Score =  184 bits (467), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 165/552 (29%), Positives = 249/552 (45%), Gaps = 113/552 (20%)

Query: 27  RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHG 86
           ++  VI+IG+G++G+AAAR L      V LLE+RDRVGGRV T     +  DLGA  + G
Sbjct: 277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTG 336

Query: 87  VCQENPLAPVISRLGL---------PLYRTSGD--------------NSVL-----YDHD 118
           +   NP+A V  ++ +         PLY  +G               N +L       H 
Sbjct: 337 LGG-NPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQ 395

Query: 119 LESRVLKTVVVSLIQANLCYALFDMDGNQVPQELV------TKVGEAFESILKE----TD 168
           L+  VL    VSL QA     +  +    V  E +       K  E  + +L +     +
Sbjct: 396 LDFNVLNNKPVSLGQA--LEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKE 453

Query: 169 KVREEHDE-----DMSIQRAISIVF---------------------------DRRPELR- 195
           K++E H +     ++   R I+  F                           ++  EL  
Sbjct: 454 KIKELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEA 513

Query: 196 -------LEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLP 246
                  L     ++L W+   +E   A    T+SLK WD+++     G H  +  GY  
Sbjct: 514 NPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSC 573

Query: 247 VINTLAKGLDIRLGHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR 300
           V   LA+GLDI+L   V ++     G +V    T    +TF+   DAV+  +PLGVLK +
Sbjct: 574 VPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQ 633

Query: 301 --TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYGCS---Y 354
              ++F P LP+WK +A+  +G G  NK+++ FD+VFW P+V   G V  T+        
Sbjct: 634 PPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFL 693

Query: 355 FLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSH 412
           F NL+KA    +L+ + AG+ A  +E +SD+         LK I   ++   P + +VS 
Sbjct: 694 FWNLYKAP---ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSR 750

Query: 413 WGTDANSLGSYSYDTVGKSHDLYERLRIPVD-------------NLFFAGEATSMSYPGS 459
           W  D  + GSYSY   G S + Y+ +  P+               LFFAGE T  +YP +
Sbjct: 751 WRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPAT 810

Query: 460 VHGAFSTGLMAA 471
           VHGA  +GL  A
Sbjct: 811 VHGALLSGLREA 822

Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me. May play a role in the repression of neuronal genes. Alone, it is unable to demethylate H3K4me on nucleosomes and requires the presence of RCOR1/CoREST to achieve such activity. Also acts as a coactivator of androgen receptor (ANDR)-dependent transcription, by being recruited to ANDR target genes and mediating demethylation of H3K9me, a specific tag for epigenetic transcriptional repression. The presence of PRKCB in ANDR-containing complexes, which mediates phosphorylation of 'Thr-6' of histone H3 (H3T6ph), a specific tag that prevents demethylation H3K4me, prevents H3K4me demethylase activity of KDM1A. Demethylates di-methylated 'Lys-370' of p53/TP53 which prevents interaction of p53/TP53 with TP53BP1 and represses p53/TP53-mediated transcriptional activation. Demethylates and stabilizes the DNA methylase DNMT1. Required for gastrulation during embryogenesis. Component of a RCOR/GFI/KDM1A/HDAC complex that suppresses, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development.

Homo sapiens (taxid: 9606)

EC: 1

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EC: -

>sp|Q6Z690|LDL1_ORYSJ Lysine-specific histone demethylase 1 homolog 1 OS=Oryza sativa subsp. japonica GN=Os02g0755200 PE=2 SV=1

 Score =  167 bits (422), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 143/476 (30%), Positives = 215/476 (45%), Gaps = 72/476 (15%)

Query: 45  RALHDASFKVVLLESRDRVGGRVHT----DYSFGFP-----VDLGASWLHGVCQENPLAP 95
           R L    FKV ++E R R GGRV T      +  +P      DLG S L G+   NPL  
Sbjct: 287 RHLMSLGFKVAIVEGRLRPGGRVFTKSMRSTAAEYPDIAAAADLGGSVLTGI-NGNPLGV 345

Query: 96  VISRLGLPLYRTSGDNSVLY-------DHDLESRVLKTVVVSLIQANLCYALFDMDGNQV 148
           +  +LG PL++   D   LY       D D+++RV      + +   +C  L  +  + +
Sbjct: 346 IARQLGFPLHKVR-DKCPLYLPDGRPVDPDMDARV--EAAFNQLLDKVCQ-LRQVVADSI 401

Query: 149 PQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYL 208
           P  +   +G A E+  +    V  E +E M                        +L W+L
Sbjct: 402 PHGVDVSLGMALEA-FRAAHGVAAEREERM------------------------LLDWHL 436

Query: 209 CRMEGWFAADAETISLKSWDKEE---------LLPGGHGLMVRGYLPVINTLAKGLDIRL 259
             +E   AA    +S+  WD+++          +PGG+   VR        LA G+ I  
Sbjct: 437 ANLEYANAAPLVDLSMAFWDQDDPYEMGGDHCFIPGGNSRFVR-------ALADGIPIFY 489

Query: 260 GHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDL 319
           G  V +I     G  V  +  +TF  D V+  VPLGVLK   I+F P LP  K  AI+ L
Sbjct: 490 GQNVRRIQYGCDGAMVYTD-KQTFRGDMVLCTVPLGVLKKGNIQFVPELPAQKREAIERL 548

Query: 320 GVGIENKIIMHFDKVFWPN-VEFLG-VVSDTSYGCSYFL--NLHKATGHCVLVYMPAGQL 375
           G G+ NK+++ F   FW   ++  G +  D+     +FL  +    +G  +L+ + AG+ 
Sbjct: 549 GFGLLNKVVLLFPYDFWDGRIDTFGHLTEDSGQRGEFFLFYSYSSVSGGPLLIALVAGES 608

Query: 376 ARDIEKMSDEAAANFAFTQLKKILP----DASSPIQYLVSHWGTDANSLGSYSYDTVGKS 431
           A + EK S           L+KI      +   P+Q + + WGTD  + GSYSY  +G S
Sbjct: 609 AIEFEKTSPAENVEKVLETLRKIFSPKGIEVPKPLQAICTRWGTDKFTYGSYSYVAIGSS 668

Query: 432 HDLYERLRIPV-DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGELD 486
            D Y+ L   V D +FFAGEAT+  YP ++HGA  +G   A +       R  ++D
Sbjct: 669 GDDYDILAESVCDRVFFAGEATNRRYPATMHGALLSGYREAANIVRAARRRAKKVD 724

Probable histone demethylase.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	507
255561152	491	amine oxidase, putative [Ricinus communi	0.966	0.997	0.826	0.0
356567482	490	PREDICTED: probable polyamine oxidase 2-	0.966	1.0	0.804	0.0
225446763	490	PREDICTED: probable polyamine oxidase 2	0.966	1.0	0.812	0.0
224066525	513	predicted protein [Populus trichocarpa]	0.966	0.955	0.801	0.0
224082614	482	predicted protein [Populus trichocarpa]	0.940	0.989	0.840	0.0
15224204	490	putative polyamine oxidase 2 [Arabidopsi	0.966	1.0	0.781	0.0
356526932	490	PREDICTED: probable polyamine oxidase 2-	0.966	1.0	0.775	0.0
297824269	490	ATPAO2 [Arabidopsis lyrata subsp. lyrata	0.966	1.0	0.781	0.0
18650598	490	At2g43020/MFL8.12 [Arabidopsis thaliana]	0.966	1.0	0.779	0.0
449463595	489	PREDICTED: probable polyamine oxidase 2-	0.964	1.0	0.773	0.0

>gi|255561152|ref|XP_002521588.1| amine oxidase, putative [Ricinus communis] gi|223539266|gb|EEF40859.1| amine oxidase, putative [Ricinus communis]

 Score =  840 bits (2170), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/508 (82%), Positives = 453/508 (89%), Gaps = 18/508 (3%)

Query: 1   MDSASRSNR-QLRRALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLES 59
           M+S  RSNR QLRR LC+S+ A + +A S SVIVIG GMAG+AAARAL+DASF+VVLLES
Sbjct: 1   MESGLRSNRSQLRRGLCFSD-AERREASSRSVIVIGGGMAGIAAARALYDASFQVVLLES 59

Query: 60  RDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDL 119
           RDR+GGRVHT+YSFGFPVDLGASWLHGV  ENPLAP+I RLGLPLYRTSGDNSVLYDHDL
Sbjct: 60  RDRLGGRVHTNYSFGFPVDLGASWLHGVGPENPLAPLIGRLGLPLYRTSGDNSVLYDHDL 119

Query: 120 ESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMS 179
           ES                YALFDMDGNQVPQELV++VGE FE ILKET+KVR+E+ EDMS
Sbjct: 120 ES----------------YALFDMDGNQVPQELVSEVGETFEIILKETEKVRQEYSEDMS 163

Query: 180 IQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGL 239
           I  A SIVF+RRPELRLEGLAHKVLQWYLCRMEGWFAADA+TISLK WD+EELLPGGHGL
Sbjct: 164 ISNAFSIVFERRPELRLEGLAHKVLQWYLCRMEGWFAADADTISLKCWDQEELLPGGHGL 223

Query: 240 MVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKA 299
           MVRGYLPVINTLAKGLDIRLGHRVTKI R + GVKVT E G+TF+ADA V+AVPLGVLK+
Sbjct: 224 MVRGYLPVINTLAKGLDIRLGHRVTKIVRRHNGVKVTTEDGRTFMADAAVIAVPLGVLKS 283

Query: 300 RTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLH 359
           RTI FEPRLPDWKE AI DLGVGIENKI++HFDKVFWPNVEFLGVVS+TSYGCSYFLNLH
Sbjct: 284 RTITFEPRLPDWKEEAIKDLGVGIENKIVLHFDKVFWPNVEFLGVVSETSYGCSYFLNLH 343

Query: 360 KATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANS 419
           KATGH VLVYMPAGQLA+DIEKMSDEAAANFAF QLKKILP+AS PIQYLVS WG+D NS
Sbjct: 344 KATGHSVLVYMPAGQLAKDIEKMSDEAAANFAFMQLKKILPEASDPIQYLVSRWGSDVNS 403

Query: 420 LGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 479
           LGSYSYDTVGK HDLYERLR+PVDNLFFAGEATS SYPGSVHGAFSTGLMAAEDCRMRVL
Sbjct: 404 LGSYSYDTVGKPHDLYERLRVPVDNLFFAGEATSASYPGSVHGAFSTGLMAAEDCRMRVL 463

Query: 480 ERYGELDLFQPVMGEETPISVPFLISRL 507
           ERYGELDLFQPVMGEE  +SVP LISR+
Sbjct: 464 ERYGELDLFQPVMGEEAAVSVPLLISRM 491

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567482|ref|XP_003551948.1| PREDICTED: probable polyamine oxidase 2-like [Glycine max]

 Score =  833 bits (2153), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/507 (80%), Positives = 447/507 (88%), Gaps = 17/507 (3%)

Query: 1   MDSASRSNRQLRRALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60
           M+S ++SN QL RALCY N+ GK Q RSPSVIVIG GMAG+AAARALH+ASF+VVLLESR
Sbjct: 1   MESRTKSNPQLTRALCYGND-GKQQGRSPSVIVIGGGMAGIAAARALHNASFQVVLLESR 59

Query: 61  DRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLE 120
           DR+GGR+HTDYSFGFPVDLGASWLHGV  ENPLA VI RLGLPLYRTSGDNSVLYDHDLE
Sbjct: 60  DRIGGRIHTDYSFGFPVDLGASWLHGVSNENPLASVIGRLGLPLYRTSGDNSVLYDHDLE 119

Query: 121 SRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSI 180
           S                YALFDMDG QVP ELVTKVGE FE+IL+ETDK+R+E  EDMS+
Sbjct: 120 S----------------YALFDMDGKQVPPELVTKVGEIFETILQETDKIRQESSEDMSV 163

Query: 181 QRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLM 240
            R +SIVFDR+PELRLEGLAHKVLQWYLCRMEGWFAAD++TISLK WD+E LLPGGHGLM
Sbjct: 164 LRGLSIVFDRKPELRLEGLAHKVLQWYLCRMEGWFAADSDTISLKGWDQEVLLPGGHGLM 223

Query: 241 VRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKAR 300
           VRGYLPVINTLAKGLDI LGHRVTK+ R Y GVKVTVE GKTF ADA V+AVPLGVLKA+
Sbjct: 224 VRGYLPVINTLAKGLDILLGHRVTKVVRRYNGVKVTVESGKTFFADAAVIAVPLGVLKAK 283

Query: 301 TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHK 360
            I F+P+LPDWKEAAI DLG+G+ENKII+HF+ VFWPNVEFLGVV+DTSYGCSYFLNLHK
Sbjct: 284 KILFKPKLPDWKEAAIADLGIGLENKIILHFENVFWPNVEFLGVVADTSYGCSYFLNLHK 343

Query: 361 ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSL 420
           A GH VLVYMP+GQLA+D+EKMSDEAA NFAF QLKKILPDASSPIQYLVS WG+D NSL
Sbjct: 344 AAGHAVLVYMPSGQLAKDVEKMSDEAAVNFAFMQLKKILPDASSPIQYLVSRWGSDINSL 403

Query: 421 GSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 480
           GSYSYD VGK H+LYERLR+PVDNLFFAGEATSMSYPGSVHGAFSTG+MAAEDCRMRVLE
Sbjct: 404 GSYSYDAVGKPHELYERLRVPVDNLFFAGEATSMSYPGSVHGAFSTGMMAAEDCRMRVLE 463

Query: 481 RYGELDLFQPVMGEETPISVPFLISRL 507
           RYGE+DLFQPVMGEE  +S+P  ISRL
Sbjct: 464 RYGEVDLFQPVMGEEASLSIPLQISRL 490

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446763|ref|XP_002282970.1| PREDICTED: probable polyamine oxidase 2 [Vitis vinifera] gi|302143503|emb|CBI22064.3| unnamed protein product [Vitis vinifera]

 Score =  832 bits (2148), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/507 (81%), Positives = 449/507 (88%), Gaps = 17/507 (3%)

Query: 1   MDSASRSNRQLRRALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60
           M+S+ RSNRQLRRALCY+N   + QA SPSVIVIGAGMAG+AAARALHDASF+VVLLESR
Sbjct: 1   MESSERSNRQLRRALCYAN-IERQQATSPSVIVIGAGMAGIAAARALHDASFRVVLLESR 59

Query: 61  DRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLE 120
           DR+GGRVHTDYSFGFPVDLGASWLHGVC+ENPLAP+ISRLGLPLYRTSGDNSVLYDHDLE
Sbjct: 60  DRIGGRVHTDYSFGFPVDLGASWLHGVCKENPLAPLISRLGLPLYRTSGDNSVLYDHDLE 119

Query: 121 SRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSI 180
           S                YALFDMDGNQVPQELV ++G AFE IL+ETDKVR+EH EDM I
Sbjct: 120 S----------------YALFDMDGNQVPQELVREIGVAFEKILEETDKVRQEHSEDMPI 163

Query: 181 QRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLM 240
             A  IVF+RRP+LRLEGLAHKVLQWYLCRMEGWFAADA+ ISLKSWD+EELLPGGHGLM
Sbjct: 164 LDAFKIVFERRPDLRLEGLAHKVLQWYLCRMEGWFAADADNISLKSWDQEELLPGGHGLM 223

Query: 241 VRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKAR 300
           VRGY+PVINTLAKGLDI L HRVTKI R Y GVKVTVE G++FVADA +VAVP+GVLK+ 
Sbjct: 224 VRGYIPVINTLAKGLDIHLNHRVTKIVRRYNGVKVTVEDGRSFVADAAIVAVPIGVLKSS 283

Query: 301 TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHK 360
            IKFEPRLP+WKE AI D+GVGIENKI +HFDKVFWPNVEFLGVV+DTSYGCSYFLNLHK
Sbjct: 284 RIKFEPRLPEWKEEAIADIGVGIENKIALHFDKVFWPNVEFLGVVADTSYGCSYFLNLHK 343

Query: 361 ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSL 420
           AT H VLVYMPAGQLA+DIEKMSDEAAANFAF QLKKILP+AS PIQYLVS WGTD NSL
Sbjct: 344 ATSHSVLVYMPAGQLAKDIEKMSDEAAANFAFMQLKKILPEASDPIQYLVSRWGTDENSL 403

Query: 421 GSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 480
           GSY+YD VGK HDLYERLR+PVDNLFFAGEATS++YPGSVHGAFSTG +AAE+CRMRVLE
Sbjct: 404 GSYTYDAVGKPHDLYERLRVPVDNLFFAGEATSVNYPGSVHGAFSTGTLAAEECRMRVLE 463

Query: 481 RYGELDLFQPVMGEETPISVPFLISRL 507
           RYGELDLFQP MGEET  S+P  ISR+
Sbjct: 464 RYGELDLFQPAMGEETSFSIPLQISRM 490

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066525|ref|XP_002302123.1| predicted protein [Populus trichocarpa] gi|222843849|gb|EEE81396.1| predicted protein [Populus trichocarpa]

 Score =  832 bits (2148), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/530 (80%), Positives = 457/530 (86%), Gaps = 40/530 (7%)

Query: 1   MDSASRSNR-QLRRALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLES 59
           MDS  +SNR QLRR LCYSN  G+GQARSPSVIVIG G+AGVAAARALHDASF+VVLLES
Sbjct: 1   MDSGFKSNRPQLRRGLCYSNE-GRGQARSPSVIVIGGGIAGVAAARALHDASFQVVLLES 59

Query: 60  RDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDL 119
           RDR+GGRVHTD+SFGFPVDLGASWLHGVC+ENPLAP+I RLGLPLYRTSGDNSVLYDHDL
Sbjct: 60  RDRLGGRVHTDFSFGFPVDLGASWLHGVCKENPLAPLIGRLGLPLYRTSGDNSVLYDHDL 119

Query: 120 ESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKET------------ 167
           ES                YALFDMDGNQVPQELVTKVGEAFE+ILKE             
Sbjct: 120 ES----------------YALFDMDGNQVPQELVTKVGEAFENILKEACISSFLFSPLLS 163

Query: 168 ----------DKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAA 217
                      KVR E++EDMSI RA SIVF+RRP+LRLEGLA KVLQWYLCRMEGWFAA
Sbjct: 164 TLPNIITLLDHKVRLENNEDMSILRAFSIVFERRPDLRLEGLALKVLQWYLCRMEGWFAA 223

Query: 218 DAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTV 277
           D+ETISLK WD+EELLPGGHGLMVRGYLPVINTLAKGLDIRL HRV KI R Y GVKVTV
Sbjct: 224 DSETISLKCWDQEELLPGGHGLMVRGYLPVINTLAKGLDIRLSHRVKKIVRRYNGVKVTV 283

Query: 278 EGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWP 337
           E G TF+ADA VVAVPLGVLK++TI FEP LPDWKE AI DLGVGIENKI+++FD VFWP
Sbjct: 284 EDGSTFMADAAVVAVPLGVLKSKTITFEPELPDWKEKAIKDLGVGIENKIVLNFDHVFWP 343

Query: 338 NVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKK 397
           NVEFLGVV++TSYGCSYFLNLHKATGH VLVYMPAG+LARDIEKMSDEAAANFAFTQLKK
Sbjct: 344 NVEFLGVVAETSYGCSYFLNLHKATGHPVLVYMPAGKLARDIEKMSDEAAANFAFTQLKK 403

Query: 398 ILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYP 457
           ILPDAS+PI+YLVS WG+D NSLGSYSYDTVGKSHDLYERLRIP+DNLFFAGEATS+SYP
Sbjct: 404 ILPDASAPIKYLVSRWGSDINSLGSYSYDTVGKSHDLYERLRIPIDNLFFAGEATSISYP 463

Query: 458 GSVHGAFSTGLMAAEDCRMRVLERYGELDLFQPVMGEETPISVPFLISRL 507
           GSVHGAFSTGLMAAE CRMRVLERYGELD+FQPVMGEE  +SVP LISR+
Sbjct: 464 GSVHGAFSTGLMAAEACRMRVLERYGELDIFQPVMGEEATVSVPLLISRM 513

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082614|ref|XP_002306765.1| predicted protein [Populus trichocarpa] gi|222856214|gb|EEE93761.1| predicted protein [Populus trichocarpa]

 Score =  830 bits (2143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/496 (84%), Positives = 452/496 (91%), Gaps = 19/496 (3%)

Query: 14  ALCYSNNAGKGQA-RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS 72
            LCYSN  G+GQA RSPSVIVIG G+AGVAAARALHDAS +VVLLESRDR+GGRVHTD+S
Sbjct: 4   GLCYSNE-GRGQATRSPSVIVIGGGIAGVAAARALHDASIQVVLLESRDRLGGRVHTDFS 62

Query: 73  FGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLI 132
           FGFPVDLGASWLHGVC+ENPLAP+I RLGLPLYRTSGDNSVLYDHDLES           
Sbjct: 63  FGFPVDLGASWLHGVCKENPLAPLIGRLGLPLYRTSGDNSVLYDHDLES----------- 111

Query: 133 QANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRP 192
                YAL+DMDGNQVPQELVTKVGEAFE+ILKETDKVR E++EDMSI RA SIVF+RRP
Sbjct: 112 -----YALYDMDGNQVPQELVTKVGEAFENILKETDKVRLENNEDMSILRAFSIVFERRP 166

Query: 193 ELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLA 252
           +LRLEGLAHKVLQWYLCRMEGWFAAD+ETISLK WD+EELLPGGHGLMVRGYLPVINTLA
Sbjct: 167 DLRLEGLAHKVLQWYLCRMEGWFAADSETISLKGWDQEELLPGGHGLMVRGYLPVINTLA 226

Query: 253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWK 312
           KGLDIRLGHRVTKI RHY GVKVTVE G+TF+ADA VVA+PLGVLK++TI FEP+LPDWK
Sbjct: 227 KGLDIRLGHRVTKIVRHYNGVKVTVEDGRTFMADAAVVAIPLGVLKSKTIMFEPKLPDWK 286

Query: 313 EAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPA 372
           E AI DLGVGIENKI+++F++VFWP VEFLGVV++TSYGCSYFLNLHKATGH VLVYMPA
Sbjct: 287 EEAIKDLGVGIENKIVLNFEQVFWPKVEFLGVVAETSYGCSYFLNLHKATGHPVLVYMPA 346

Query: 373 GQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSH 432
           G+LARDIEKMSDEAAANFAF QLKKILPDA +PIQYLVS WG+D NSLGSYSYDTVGK H
Sbjct: 347 GKLARDIEKMSDEAAANFAFMQLKKILPDAFAPIQYLVSRWGSDINSLGSYSYDTVGKPH 406

Query: 433 DLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGELDLFQPVM 492
           +LYERLRIPVDNLFFAGEATS+SYPGSVHGAFSTGLMAAEDCRMRVLERYGELDLFQPVM
Sbjct: 407 ELYERLRIPVDNLFFAGEATSVSYPGSVHGAFSTGLMAAEDCRMRVLERYGELDLFQPVM 466

Query: 493 G-EETPISVPFLISRL 507
           G EE P+SVP LISR+
Sbjct: 467 GTEEAPVSVPLLISRI 482

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224204|ref|NP_181830.1| putative polyamine oxidase 2 [Arabidopsis thaliana] gi|75206576|sp|Q9SKX5.1|PAO2_ARATH RecName: Full=Probable polyamine oxidase 2; Short=AtPAO2; AltName: Full=Amine oxidase 1 gi|29468124|gb|AAO85404.1|AF364952_1 putative amine oxidase 1 [Arabidopsis thaliana] gi|4531444|gb|AAD22129.1| putative amine oxidase [Arabidopsis thaliana] gi|115311507|gb|ABI93934.1| At2g43020 [Arabidopsis thaliana] gi|330255105|gb|AEC10199.1| putative polyamine oxidase 2 [Arabidopsis thaliana]

 Score =  810 bits (2092), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/507 (78%), Positives = 440/507 (86%), Gaps = 17/507 (3%)

Query: 1   MDSASRSNRQLRRALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60
           M+S   S+RQ+RRA C+S    + + RSPSVIVIG G  G++AAR L DASF+V++LESR
Sbjct: 1   MESRKNSDRQMRRANCFSAGE-RMKTRSPSVIVIGGGFGGISAARTLQDASFQVMVLESR 59

Query: 61  DRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLE 120
           DR+GGRVHTDYSFGFPVDLGASWLHGVC+ENPLAPVI RLGLPLYRTSGDNSVLYDHDLE
Sbjct: 60  DRIGGRVHTDYSFGFPVDLGASWLHGVCKENPLAPVIGRLGLPLYRTSGDNSVLYDHDLE 119

Query: 121 SRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSI 180
           S                YALFDMDGNQVPQELVT++G  FE IL+E +KVR+E D D+SI
Sbjct: 120 S----------------YALFDMDGNQVPQELVTQIGVTFERILEEINKVRDEQDADISI 163

Query: 181 QRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLM 240
            +A SIVF R+PELRLEGLAH VLQWY+CRMEGWFAADAETIS K WD+EELLPGGHGLM
Sbjct: 164 SQAFSIVFSRKPELRLEGLAHNVLQWYVCRMEGWFAADAETISAKCWDQEELLPGGHGLM 223

Query: 241 VRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKAR 300
           VRGY PVINTLAKGLDIR+GHRVTKI R Y GVKVT E G+TFVADA V+AVPLGVLK+ 
Sbjct: 224 VRGYRPVINTLAKGLDIRVGHRVTKIVRRYNGVKVTTENGQTFVADAAVIAVPLGVLKSG 283

Query: 301 TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHK 360
           TIKFEP+LP+WK+ AI+DLGVGIENKII+HF+KVFWP VEFLGVV++TSYGCSYFLNLHK
Sbjct: 284 TIKFEPKLPEWKQEAINDLGVGIENKIILHFEKVFWPKVEFLGVVAETSYGCSYFLNLHK 343

Query: 361 ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSL 420
           ATGH VLVYMPAGQLA+DIEKMSDEAAANFA  QL++ILPDA  P+QYLVS WG+D NS+
Sbjct: 344 ATGHPVLVYMPAGQLAKDIEKMSDEAAANFAVLQLQRILPDALPPVQYLVSRWGSDVNSM 403

Query: 421 GSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 480
           GSYSYD VGK HDLYERLR+PVDNLFFAGEATS S+PGSVHGA+STGLMAAEDCRMRVLE
Sbjct: 404 GSYSYDIVGKPHDLYERLRVPVDNLFFAGEATSSSFPGSVHGAYSTGLMAAEDCRMRVLE 463

Query: 481 RYGELDLFQPVMGEETPISVPFLISRL 507
           RYGELDLFQPVMGEE P SVP LISRL
Sbjct: 464 RYGELDLFQPVMGEEGPASVPLLISRL 490

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526932|ref|XP_003532069.1| PREDICTED: probable polyamine oxidase 2-like [Glycine max]

 Score =  809 bits (2090), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/507 (77%), Positives = 439/507 (86%), Gaps = 17/507 (3%)

Query: 1   MDSASRSNRQLRRALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60
           M+S ++SN QL RALCY+N+ G  Q RSPSVIVIG GMAG+AAAR+LHDAS +VVLLESR
Sbjct: 1   MESRTKSNPQLTRALCYAND-GNQQGRSPSVIVIGGGMAGIAAARSLHDASLQVVLLESR 59

Query: 61  DRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLE 120
           +R+GGR+HTDYSFGFPVD+GASWLHGV  ENPLA VI RLGLPLYRTSGDNS+LYDHDLE
Sbjct: 60  ERIGGRIHTDYSFGFPVDMGASWLHGVSNENPLASVIGRLGLPLYRTSGDNSILYDHDLE 119

Query: 121 SRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSI 180
           S                Y LFDMDG QVPQELV KVGE FE+IL+ETDK+R+E  EDMS+
Sbjct: 120 S----------------YGLFDMDGKQVPQELVAKVGEIFEAILQETDKIRQESSEDMSV 163

Query: 181 QRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLM 240
            R +SIVFDR+PELRLEG+A+KVLQWYLCR+EGWFAAD + ISLK WD+E LLPGGHGLM
Sbjct: 164 LRGLSIVFDRKPELRLEGIAYKVLQWYLCRLEGWFAADTDAISLKGWDQEVLLPGGHGLM 223

Query: 241 VRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKAR 300
           VRGYLPV+N+LAKGLDIRLGHRVTK+ R Y GVKVTVE GKTF ADA V+AVPLGVLKA+
Sbjct: 224 VRGYLPVVNSLAKGLDIRLGHRVTKVVRRYNGVKVTVENGKTFFADAAVIAVPLGVLKAK 283

Query: 301 TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHK 360
            I FEP+LPDWKEAAI DLG+G+ENKII+HF+ VFWPNVEFLGVV+DT Y CSYFLNLHK
Sbjct: 284 KILFEPKLPDWKEAAIADLGIGLENKIILHFENVFWPNVEFLGVVADTPYECSYFLNLHK 343

Query: 361 ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSL 420
           ATG  VLVYMP+GQLA+D+EKM DEAA NFAF QLKKI PDASSPIQYLVS WG+D NSL
Sbjct: 344 ATGRAVLVYMPSGQLAKDVEKMPDEAAVNFAFMQLKKIFPDASSPIQYLVSRWGSDINSL 403

Query: 421 GSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 480
           GSYSYD VGK H+LYERLR+PVDNLFFAGEATSMSYPGSVHGA+STG MAAEDCRMRVLE
Sbjct: 404 GSYSYDAVGKPHELYERLRVPVDNLFFAGEATSMSYPGSVHGAYSTGTMAAEDCRMRVLE 463

Query: 481 RYGELDLFQPVMGEETPISVPFLISRL 507
           RYGE+DLFQPVMGEE  +S+P  ISRL
Sbjct: 464 RYGEVDLFQPVMGEEGSMSIPLQISRL 490

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824269|ref|XP_002880017.1| ATPAO2 [Arabidopsis lyrata subsp. lyrata] gi|297325856|gb|EFH56276.1| ATPAO2 [Arabidopsis lyrata subsp. lyrata]

 Score =  809 bits (2089), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/507 (78%), Positives = 440/507 (86%), Gaps = 17/507 (3%)

Query: 1   MDSASRSNRQLRRALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60
           M+S   S+RQ+RRA C+S    + + RSPSVIVIG G  G++AAR L DASF+V++LESR
Sbjct: 1   MESRKNSDRQMRRANCFSAGE-RMKTRSPSVIVIGGGFGGISAARTLQDASFQVMVLESR 59

Query: 61  DRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLE 120
           DR+GGRVHTDYSFGFPVDLGASWLHGVC+ENPLAPVI RLGLPLYRTSGDNSVLYDHDLE
Sbjct: 60  DRIGGRVHTDYSFGFPVDLGASWLHGVCKENPLAPVIGRLGLPLYRTSGDNSVLYDHDLE 119

Query: 121 SRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSI 180
           S                YALFDMDGNQVPQELVT++G  FE IL+E +KVR+E D D+SI
Sbjct: 120 S----------------YALFDMDGNQVPQELVTQIGVTFERILEEINKVRDEQDADISI 163

Query: 181 QRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLM 240
            +A SIVF R+PELRLEGLAH VLQWY+CRMEGWFAADAETIS K WD+EELLPGGHGLM
Sbjct: 164 SQAFSIVFARKPELRLEGLAHNVLQWYVCRMEGWFAADAETISAKCWDQEELLPGGHGLM 223

Query: 241 VRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKAR 300
           VRGY PVINTLAKGLDIR+GHRVTKI R Y GVKVT E G+TFVADA V+AVPLGVLK+ 
Sbjct: 224 VRGYRPVINTLAKGLDIRVGHRVTKIVRRYNGVKVTTENGETFVADAAVIAVPLGVLKSG 283

Query: 301 TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHK 360
           TIKFEP+LP+WK+ AI+DLGVGIENKII+HF+KVFWP VEFLGVV++TSYGCSYFLNLHK
Sbjct: 284 TIKFEPKLPEWKQEAINDLGVGIENKIILHFEKVFWPKVEFLGVVAETSYGCSYFLNLHK 343

Query: 361 ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSL 420
           ATGH VLVYMPAGQLA+DIEKMSDEAAANFA  QL++ILPDA  P+QYLVS WG+D NS+
Sbjct: 344 ATGHPVLVYMPAGQLAKDIEKMSDEAAANFAVLQLQRILPDALPPVQYLVSRWGSDVNSM 403

Query: 421 GSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 480
           GSYSYD VGK HDLYERLR+PVDNLFFAGEATS S+PGSVHGA+STGLMAAEDCRMRVLE
Sbjct: 404 GSYSYDIVGKPHDLYERLRVPVDNLFFAGEATSSSFPGSVHGAYSTGLMAAEDCRMRVLE 463

Query: 481 RYGELDLFQPVMGEETPISVPFLISRL 507
           RYGELDLFQPVMGEE P SVP LISRL
Sbjct: 464 RYGELDLFQPVMGEEGPASVPLLISRL 490

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18650598|gb|AAL75899.1| At2g43020/MFL8.12 [Arabidopsis thaliana]

 Score =  808 bits (2087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/507 (77%), Positives = 439/507 (86%), Gaps = 17/507 (3%)

Query: 1   MDSASRSNRQLRRALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60
           M+S   S+RQ+RRA C+S    + + RSPSVIVIG G  G++AAR L DASF+V++LESR
Sbjct: 1   MESRKNSDRQMRRANCFSAGE-RMKTRSPSVIVIGGGFGGISAARTLQDASFQVMVLESR 59

Query: 61  DRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLE 120
           DR+GGRVHTDYSFGFPVDLGASWLHGVC+ENPLAPVI RLGLPLYRTSGDNSVLYDHDLE
Sbjct: 60  DRIGGRVHTDYSFGFPVDLGASWLHGVCKENPLAPVIGRLGLPLYRTSGDNSVLYDHDLE 119

Query: 121 SRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSI 180
           S                YALFDMDGNQVPQELVT++G  FE IL+E +KVR+E D D+SI
Sbjct: 120 S----------------YALFDMDGNQVPQELVTQIGVTFERILEEINKVRDEQDADISI 163

Query: 181 QRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLM 240
            +A SIVF R+PELRLEGLAH VLQWY+CRMEGWFAADAETIS K WD+EELLPGGHGLM
Sbjct: 164 SQAFSIVFSRKPELRLEGLAHNVLQWYVCRMEGWFAADAETISAKCWDQEELLPGGHGLM 223

Query: 241 VRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKAR 300
           VRGY PVINTLAKGLDIR+GHRVTKI R Y GVKVT E G+TFVADA V+AVPLGVLK+ 
Sbjct: 224 VRGYRPVINTLAKGLDIRVGHRVTKIVRRYNGVKVTTENGQTFVADAAVIAVPLGVLKSG 283

Query: 301 TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHK 360
           TIKF P+LP+WK+ AI+DLGVGIENKII+HF+KVFWP VEFLGVV++TSYGCSYFLNLHK
Sbjct: 284 TIKFGPKLPEWKQEAINDLGVGIENKIILHFEKVFWPKVEFLGVVAETSYGCSYFLNLHK 343

Query: 361 ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSL 420
           ATGH VLVYMPAGQLA+DIEKMSDEAAANFA  QL++ILPDA  P+QYLVS WG+D NS+
Sbjct: 344 ATGHPVLVYMPAGQLAKDIEKMSDEAAANFAVLQLQRILPDALPPVQYLVSRWGSDVNSM 403

Query: 421 GSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 480
           GSYSYD VGK HDLYERLR+PVDNLFFAGEATS S+PGSVHGA+STGLMAAEDCRMRVLE
Sbjct: 404 GSYSYDIVGKPHDLYERLRVPVDNLFFAGEATSSSFPGSVHGAYSTGLMAAEDCRMRVLE 463

Query: 481 RYGELDLFQPVMGEETPISVPFLISRL 507
           RYGELDLFQPVMGEE P SVP LISRL
Sbjct: 464 RYGELDLFQPVMGEEGPASVPLLISRL 490

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463595|ref|XP_004149519.1| PREDICTED: probable polyamine oxidase 2-like [Cucumis sativus] gi|449505802|ref|XP_004162572.1| PREDICTED: probable polyamine oxidase 2-like [Cucumis sativus]

 Score =  807 bits (2085), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/507 (77%), Positives = 451/507 (88%), Gaps = 18/507 (3%)

Query: 1   MDSASRSNRQLRRALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60
           M+S SRSN QLR+A+C+S    KGQ RSPSVIVIG G+AGVAAARALHDASF+V+LLE+R
Sbjct: 1   MESGSRSNSQLRKAVCHSGPE-KGQVRSPSVIVIGGGIAGVAAARALHDASFQVILLEAR 59

Query: 61  DRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLE 120
           +R+GGR++T+YSFGFPVDLGASWLHGVC+ENPLAP+I +LGLPLYRTS DNSVLYDHDLE
Sbjct: 60  ERLGGRIYTNYSFGFPVDLGASWLHGVCKENPLAPLIGKLGLPLYRTSEDNSVLYDHDLE 119

Query: 121 SRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSI 180
           S                YALFDM+G QVPQELVTKVG+ FE++L+E DK+R+E+ EDM+I
Sbjct: 120 S----------------YALFDMEGKQVPQELVTKVGQVFEAVLEEADKIRDEYTEDMTI 163

Query: 181 QRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLM 240
            RA SI+F+RRPEL+++GLAHKVLQWYLCRMEGWFAADA TISLK WD+EELLPGGHGLM
Sbjct: 164 TRAFSIIFERRPELKMDGLAHKVLQWYLCRMEGWFAADANTISLKCWDQEELLPGGHGLM 223

Query: 241 VRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKAR 300
           VRGYLPVINTLAKGLDIRLGHRV+K+ R Y  +KVTVE G TFVADA +VAVPLGVLKA 
Sbjct: 224 VRGYLPVINTLAKGLDIRLGHRVSKVVRRYNEIKVTVENGTTFVADAAIVAVPLGVLKAN 283

Query: 301 TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHK 360
           TI+FEP+LPDWKE+AI DLGVG+ENKII+HF++VFWPNVEFLGVV++T+Y CSYFLNLHK
Sbjct: 284 TIEFEPKLPDWKESAISDLGVGVENKIILHFEQVFWPNVEFLGVVAETTYECSYFLNLHK 343

Query: 361 ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSL 420
           ATGH VLVYMPAGQLA DIEK+SDEAAANFAFTQLKKILPDAS PI +LVS WGTD ++L
Sbjct: 344 ATGHSVLVYMPAGQLAEDIEKLSDEAAANFAFTQLKKILPDASDPINFLVSRWGTDVDTL 403

Query: 421 GSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 480
           GSYSYD VGK HDLYE+LRIP+DN+FFAGEATS S+PGSVHGAF+TG+MAAEDCRMRVLE
Sbjct: 404 GSYSYDIVGKPHDLYEKLRIPIDNIFFAGEATSTSFPGSVHGAFATGVMAAEDCRMRVLE 463

Query: 481 RYGELDLFQPVMGEETPISVPFLISRL 507
           RYGEL++FQPV+ EE P+SVP LISRL
Sbjct: 464 RYGELNIFQPVLAEE-PVSVPLLISRL 489

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	507
TAIR|locus:2053723	490	PAO2 "AT2G43020" [Arabidopsis	0.960	0.993	0.755	1.3e-203
TAIR|locus:2077670	488	PAO3 "polyamine oxidase 3" [Ar	0.962	1.0	0.743	7.6e-199
TAIR|locus:2018571	497	PAO4 "polyamine oxidase 4" [Ar	0.877	0.895	0.618	5.8e-153
TAIR|locus:2130454	1628	LDL3 "LSD1-like 3" [Arabidopsi	0.603	0.187	0.353	4.7e-50
TAIR|locus:2091501	746	LDL2 "LSD1-like2" [Arabidopsis	0.680	0.462	0.341	5.2e-47
UNIPROTKB|F1LVQ3	735	Kdm1 "Protein Kdm1" [Rattus no	0.597	0.412	0.334	1e-43
RGD|1562975	755	Kdm1a "lysine (K)-specific dem	0.597	0.401	0.334	1.2e-43
UNIPROTKB|E2RNL9	876	KDM1A "Uncharacterized protein	0.597	0.345	0.334	1.3e-43
UNIPROTKB|F6S0T5	876	KDM1A "Lysine-specific histone	0.597	0.345	0.334	1.3e-43
UNIPROTKB|F1STX7	853	KDM1A "Uncharacterized protein	0.642	0.382	0.326	1.9e-43

TAIR|locus:2053723 PAO2 "AT2G43020" [Arabidopsis thaliana (taxid:3702)]

 Score = 1970 (698.5 bits), Expect = 1.3e-203, P = 1.3e-203
 Identities = 381/504 (75%), Positives = 421/504 (83%)

Query:     5 SRSNRQLRRALCYSNNAGKG-QARSPSXXXXXXXXXXXXXXXXLHDASFKVVLLESRDRV 63
             SR N   +       +AG+  + RSPS                L DASF+V++LESRDR+
Sbjct:     3 SRKNSDRQMRRANCFSAGERMKTRSPSVIVIGGGFGGISAARTLQDASFQVMVLESRDRI 62

Query:    64 GGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRV 123
             GGRVHTDYSFGFPVDLGASWLHGVC+ENPLAPVI RLGLPLYRTSGDNSVLYDHDLES  
Sbjct:    63 GGRVHTDYSFGFPVDLGASWLHGVCKENPLAPVIGRLGLPLYRTSGDNSVLYDHDLES-- 120

Query:   124 LKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRA 183
                           YALFDMDGNQVPQELVT++G  FE IL+E +KVR+E D D+SI +A
Sbjct:   121 --------------YALFDMDGNQVPQELVTQIGVTFERILEEINKVRDEQDADISISQA 166

Query:   184 ISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRG 243
              SIVF R+PELRLEGLAH VLQWY+CRMEGWFAADAETIS K WD+EELLPGGHGLMVRG
Sbjct:   167 FSIVFSRKPELRLEGLAHNVLQWYVCRMEGWFAADAETISAKCWDQEELLPGGHGLMVRG 226

Query:   244 YLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIK 303
             Y PVINTLAKGLDIR+GHRVTKI R Y GVKVT E G+TFVADA V+AVPLGVLK+ TIK
Sbjct:   227 YRPVINTLAKGLDIRVGHRVTKIVRRYNGVKVTTENGQTFVADAAVIAVPLGVLKSGTIK 286

Query:   304 FEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATG 363
             FEP+LP+WK+ AI+DLGVGIENKII+HF+KVFWP VEFLGVV++TSYGCSYFLNLHKATG
Sbjct:   287 FEPKLPEWKQEAINDLGVGIENKIILHFEKVFWPKVEFLGVVAETSYGCSYFLNLHKATG 346

Query:   364 HCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSY 423
             H VLVYMPAGQLA+DIEKMSDEAAANFA  QL++ILPDA  P+QYLVS WG+D NS+GSY
Sbjct:   347 HPVLVYMPAGQLAKDIEKMSDEAAANFAVLQLQRILPDALPPVQYLVSRWGSDVNSMGSY 406

Query:   424 SYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYG 483
             SYD VGK HDLYERLR+PVDNLFFAGEATS S+PGSVHGA+STGLMAAEDCRMRVLERYG
Sbjct:   407 SYDIVGKPHDLYERLRVPVDNLFFAGEATSSSFPGSVHGAYSTGLMAAEDCRMRVLERYG 466

Query:   484 ELDLFQPVMGEETPISVPFLISRL 507
             ELDLFQPVMGEE P SVP LISRL
Sbjct:   467 ELDLFQPVMGEEGPASVPLLISRL 490

GO:0008131 "primary amine oxidase activity" evidence=ISS

GO:0006598 "polyamine catabolic process" evidence=IDA

GO:0046592 "polyamine oxidase activity" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

TAIR|locus:2077670 PAO3 "polyamine oxidase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1925 (682.7 bits), Expect = 7.6e-199, P = 7.6e-199
 Identities = 377/507 (74%), Positives = 415/507 (81%)

Query:     1 MDSASRSNRQLRRALCYSNNAGKGQARSPSXXXXXXXXXXXXXXXXLHDASFKVVLLESR 60
             M+S  ++NRQLR+A+C S +    + RSPS                L DASF+VV+LESR
Sbjct:     1 MESGGKTNRQLRKAICVSTDEKMKKKRSPSVIVIGGGMAGISAARTLQDASFQVVVLESR 60

Query:    61 DRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLE 120
             DR+GGRVHTDYSFGFPVDLGASWLHGVC+ENPLA VI RLGLPLYRTSGDNSVLYDHDLE
Sbjct:    61 DRIGGRVHTDYSFGFPVDLGASWLHGVCKENPLAAVIGRLGLPLYRTSGDNSVLYDHDLE 120

Query:   121 SRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSI 180
             S                YALFD  GNQV QELVTKVGE FE IL+E  KVR+E DEDMSI
Sbjct:   121 S----------------YALFDKAGNQVSQELVTKVGENFEHILEEICKVRDEQDEDMSI 164

Query:   181 QRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLM 240
              +A SIVF R PELRLEGLAH VLQWYLCRMEGWFAADAETIS K WD+EELLPGGHGLM
Sbjct:   165 AQAFSIVFKRNPELRLEGLAHNVLQWYLCRMEGWFAADAETISAKCWDQEELLPGGHGLM 224

Query:   241 VRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKAR 300
             VRGY PVINTL+KGLDIRL HR+TKI+R Y GVKVT E G TFVADA V+A+PLGVLK+ 
Sbjct:   225 VRGYRPVINTLSKGLDIRLSHRITKISRRYSGVKVTTEKGDTFVADAAVIALPLGVLKSG 284

Query:   301 TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHK 360
              I FEP+LP WK+ AI+DLGVGIENKII++FD VFWPNVEFLGVV++TSYGCSYFLNLHK
Sbjct:   285 MITFEPKLPQWKQEAINDLGVGIENKIILNFDNVFWPNVEFLGVVAETSYGCSYFLNLHK 344

Query:   361 ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSL 420
             AT H VLVYMPAGQLARDIEK SDEAAANFAF+QL+KILPDASSPI YLVS WG+D NSL
Sbjct:   345 ATSHPVLVYMPAGQLARDIEKKSDEAAANFAFSQLQKILPDASSPINYLVSRWGSDINSL 404

Query:   421 GSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 480
             GSYSYD V K HDLYERLR+P+DNLFFAGEATS SYPGSVHGA+STG++AAEDCRMRVLE
Sbjct:   405 GSYSYDIVNKPHDLYERLRVPLDNLFFAGEATSSSYPGSVHGAYSTGVLAAEDCRMRVLE 464

Query:   481 RYGELDLFQPVMGEETPISVPFLISRL 507
             RYGEL+     M EE P SVP LISR+
Sbjct:   465 RYGELE---HEMEEEAPASVPLLISRM 488

GO:0005634 "nucleus" evidence=ISM

GO:0005777 "peroxisome" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA;IDA

GO:0046592 "polyamine oxidase activity" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

TAIR|locus:2018571 PAO4 "polyamine oxidase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1492 (530.3 bits), Expect = 5.8e-153, P = 5.8e-153
 Identities = 289/467 (61%), Positives = 347/467 (74%)

Query:    47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106
             L +ASFKV +LESRDR+GGR+HTDYSFG PVD+GASWLHGV  ENPLAP+I RLGL LYR
Sbjct:    47 LSEASFKVTVLESRDRIGGRIHTDYSFGCPVDMGASWLHGVSDENPLAPIIRRLGLTLYR 106

Query:   107 TSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKE 166
             TSGD+S+LYDHDLES                Y LFDM GN++P +LVTKVG+AF+ IL+E
Sbjct:   107 TSGDDSILYDHDLES----------------YGLFDMHGNKIPPQLVTKVGDAFKRILEE 150

Query:   167 TDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKS 226
             T+K+R+E   DMS+ + ISIV DR PELR EG+A++VLQWYLCRME WFA DA  ISLK 
Sbjct:   151 TEKIRDETANDMSVLQGISIVLDRNPELRQEGMAYEVLQWYLCRMEAWFAVDANLISLKC 210

Query:   227 WDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVA 285
             WD++E L GGHGLMV+GY PVI T+AK LDIRL HRVTK+ R     V V VEGG  FVA
Sbjct:   211 WDQDECLSGGHGLMVQGYEPVIRTIAKDLDIRLNHRVTKVVRTSNNKVIVAVEGGTNFVA 270

Query:   286 DAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVV 345
             DAV++ VP+GVLKA  I+FEP LP WK +AI  LGVG ENKI + FD+ FWPNVEFLG+V
Sbjct:   271 DAVIITVPIGVLKANLIQFEPELPQWKTSAISGLGVGNENKIALRFDRAFWPNVEFLGMV 330

Query:   346 SDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSP 405
             + TSY C YFLNLHKATGH VLVYM AG LA+D+EK+SDEA ANF   QLKK+ PDA  P
Sbjct:   331 APTSYACGYFLNLHKATGHPVLVYMAAGNLAQDLEKLSDEATANFVMLQLKKMFPDAPDP 390

Query:   406 IQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFS 465
              QYLV+ WGTD N+LG Y+YD VG   DLY RL  PVDN+FF GEA ++ + GS HGAF 
Sbjct:   391 AQYLVTRWGTDPNTLGCYAYDVVGMPEDLYPRLGEPVDNIFFGGEAVNVEHQGSAHGAFL 450

Query:   466 TGLMAAEDCRMRVLERYGELDLFQPV--MGEETPI---SVPFLISRL 507
              G+ A+++C+  + ER G  +  + V  MG    +   +VP  ISR+
Sbjct:   451 AGVSASQNCQRYIFERLGAWEKLKLVSLMGNSDILETATVPLQISRM 497

GO:0005634 "nucleus" evidence=ISM

GO:0008131 "primary amine oxidase activity" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA;IDA;IMP

GO:0046592 "polyamine oxidase activity" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

TAIR|locus:2130454 LDL3 "LSD1-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 4.7e-50, Sum P(2) = 4.7e-50
 Identities = 121/342 (35%), Positives = 180/342 (52%)

Query:   196 LEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPG--G-HGLMVRGYLPVINTLA 252
             L  L  +V+ W+    E   AA  + +SL  W+++E   G  G H ++  GY  V+ +LA
Sbjct:   804 LNPLERRVMNWHFAHTEYGCAAVLKEVSLPHWNQDEFYGGFGGPHAMIKGGYSRVVESLA 863

Query:   253 KGLDIRLGHRVTKITRHYIG-----------VKVTVEGGKTFVADAVVVAVPLGVLKART 301
             +GLDI L   V+ ++  Y+            V+V+   G  ++ DAV+V VPLG LKA T
Sbjct:   864 EGLDIHLNKIVSDVS--YVSDVSAMDNSKHKVRVSTSNGCEYLGDAVLVTVPLGCLKAET 921

Query:   302 IKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPN-VEFLGVVSDTS--YG-CSYFLN 357
             IKF P LPDWK A+I  LG G+ NK+++ F  VFW + V++ G  ++ +   G C  F N
Sbjct:   922 IKFSPPLPDWKYASIKQLGFGVLNKVVLEFPTVFWDDSVDYFGATAEETDLRGECFMFWN 981

Query:   358 LHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD--ASSPIQYLVSHWGT 415
             + K  G  VL+ +  G+ A +    S     N A   L+K+        P+  +V+ WGT
Sbjct:   982 VKKTVGAPVLIALVVGKAAFEYTNKSKSEHVNHAMMVLRKLFGGDLVPDPVASVVTDWGT 1041

Query:   416 DANSLGSYSYDTVGKSHDLYERLRIPVDN-LFFAGEATSMSYPGSVHGAFSTGLMAAEDC 474
             D  S G+YSY  +G S + Y+ L  PV N LFFAGEAT   +P +V GA  TG+  A   
Sbjct:  1042 DPYSYGAYSYVAIGASGEDYDVLGRPVQNCLFFAGEATCKEHPDTVGGAMMTGVREA--- 1098

Query:   475 RMRVLE--RYG-----ELDLFQPVMGEETPI--SVPFLISRL 507
              +R+++  R G     E++  +    +  P+   V  LI RL
Sbjct:  1099 -VRIIDILRSGNDYTAEIETLEKAQRKSVPVRDEVRDLIKRL 1139

GO:0005739 "mitochondrion" evidence=ISM

GO:0008131 "primary amine oxidase activity" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009851 "auxin biosynthetic process" evidence=RCA

GO:0010229 "inflorescence development" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

TAIR|locus:2091501 LDL2 "LSD1-like2" [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 5.2e-47, Sum P(2) = 5.2e-47
 Identities = 126/369 (34%), Positives = 191/369 (51%)

Query:   140 LFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELR-LEG 198
             L++ +G  V +   + V   F  +L +  +VRE   E  + + ++  V +    LR L G
Sbjct:   247 LYNSEGVLVDKVADSNVEFGFNKLLDKVTEVREMM-EGAAKKISLGEVLET---LRVLYG 302

Query:   199 LA-----HKVLQWYLCRMEGWFAADAETISLKSWDKEEL--LPGGHGLMVRGYLPVINTL 251
             +A      K+  W+L  +E   A     +S   WD+++   + G H  +  G   +IN L
Sbjct:   303 VAKDSEERKLFDWHLANLEYANAGCLSNLSAAYWDQDDPYEMGGDHCFLAGGNWRLINAL 362

Query:   252 AKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDW 311
             A+GL I  G  V  I     GV+V + G + F AD ++  VPLGVLK R+IKFEP LP  
Sbjct:   363 AEGLPIIYGKSVDTIKYGDGGVEV-ISGSQIFQADMILCTVPLGVLKKRSIKFEPELPRR 421

Query:   312 KEAAIDDLGVGIENKIIMHFDKVFWPN-VEFLGVVSDTSYGCS-YFL--NLHKATGHCVL 367
             K+AAID LG G+ NK+ M F  VFW + ++  G ++++S     +FL    H  +G   L
Sbjct:   422 KQAAIDRLGFGLLNKVAMLFPSVFWGDELDTFGCLNESSINRGEFFLFYAYHTVSGGPAL 481

Query:   368 VYMPAGQLARDIEKMSDEAAANFAFTQLKKIL-PDA---SSPIQYLVSHWGTDANSLGSY 423
             V + AG+ A+  E        +    +L+ I  P       PIQ + + WG+D  S GSY
Sbjct:   482 VALVAGEAAQRFECTEPSVLLHRVLKKLRGIYGPKGVVVPDPIQTVCTRWGSDPLSYGSY 541

Query:   424 SYDTVGKSHDLYERLRIPVDN-LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERY 482
             S+  VG S   Y+ L   V N LFFAGEAT+  +P ++HGA+ +GL  A   ++  +  Y
Sbjct:   542 SHVRVGSSGVDYDILAESVSNRLFFAGEATTRQHPATMHGAYLSGLREAS--KILHVANY 599

Query:   483 GELDLFQPV 491
                +L +PV
Sbjct:   600 LRSNLKKPV 608

GO:0005739 "mitochondrion" evidence=ISM

GO:0008131 "primary amine oxidase activity" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0051568 "histone H3-K4 methylation" evidence=IMP

UNIPROTKB|F1LVQ3 Kdm1 "Protein Kdm1" [Rattus norvegicus (taxid:10116)]

 Score = 384 (140.2 bits), Expect = 1.0e-43, Sum P(2) = 1.0e-43
 Identities = 114/341 (33%), Positives = 175/341 (51%)

Query:   162 SILKETDKVREEHDEDMSIQRAISIVFDRRP-ELRLEGLAHKVLQWYLCRMEGWFAADAE 220
             ++ KE D++ E   +   ++  +  +    P ++ L     ++L W+   +E   A    
Sbjct:   372 ALCKEYDELAETQGK---LEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLS 428

Query:   221 TISLKSWDKEE--LLPGGHGLMVR-GYLPVINTLAKGLDIRLGHRVTKITRHYIGVKV-- 275
             T+SLK WD+++     G H L VR GY  V   LA+GLDI+L   V ++     G +V  
Sbjct:   429 TLSLKHWDQDDDFEFTGSH-LTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIA 487

Query:   276 --TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDDLGVGIENKIIM 329
               T    +TF+   DAV+  +PLGVLK +   ++F P LP+WK +A+  +G G  NK+++
Sbjct:   488 VNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVL 547

Query:   330 HFDKVFW-PNVEFLGVVSDT--SYGCSY-FLNLHKATGHCVLVYMPAGQLARDIEKMSDE 385
              FD+VFW P+V   G V  T  S G  + F NL+KA    +L+ + AG+ A  +E +SD+
Sbjct:   548 CFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLALVAGEAAGIMENISDD 604

Query:   386 AAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVD 443
                      LK I   ++   P + +VS W  D  + GSYSY   G S + Y+ +  P+ 
Sbjct:   605 VIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPIT 664

Query:   444 -------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 471
                           LFFAGE T  +YP +VHGA  +GL  A
Sbjct:   665 PGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 705

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000790 "nuclear chromatin" evidence=IEA

GO:0001085 "RNA polymerase II transcription factor binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0002039 "p53 binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0010725 "regulation of primitive erythrocyte differentiation" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0021983 "pituitary gland development" evidence=IEA

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=IEA

GO:0030851 "granulocyte differentiation" evidence=IEA

GO:0032091 "negative regulation of protein binding" evidence=IEA

GO:0032454 "histone demethylase activity (H3-K9 specific)" evidence=IEA

GO:0034648 "histone demethylase activity (H3-dimethyl-K4 specific)" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043426 "MRF binding" evidence=IEA

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0045648 "positive regulation of erythrocyte differentiation" evidence=IEA

GO:0045654 "positive regulation of megakaryocyte differentiation" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0046886 "positive regulation of hormone biosynthetic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050681 "androgen receptor binding" evidence=IEA

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0051572 "negative regulation of histone H3-K4 methylation" evidence=IEA

GO:0051573 "negative regulation of histone H3-K9 methylation" evidence=IEA

GO:0055001 "muscle cell development" evidence=IEA

GO:2000179 "positive regulation of neural precursor cell proliferation" evidence=IEA

GO:2000648 "positive regulation of stem cell proliferation" evidence=IEA

RGD|1562975 Kdm1a "lysine (K)-specific demethylase 1A" [Rattus norvegicus (taxid:10116)]

 Score = 384 (140.2 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
 Identities = 114/341 (33%), Positives = 175/341 (51%)

Query:   162 SILKETDKVREEHDEDMSIQRAISIVFDRRP-ELRLEGLAHKVLQWYLCRMEGWFAADAE 220
             ++ KE D++ E   +   ++  +  +    P ++ L     ++L W+   +E   A    
Sbjct:   392 ALCKEYDELAETQGK---LEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLS 448

Query:   221 TISLKSWDKEE--LLPGGHGLMVR-GYLPVINTLAKGLDIRLGHRVTKITRHYIGVKV-- 275
             T+SLK WD+++     G H L VR GY  V   LA+GLDI+L   V ++     G +V  
Sbjct:   449 TLSLKHWDQDDDFEFTGSH-LTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIA 507

Query:   276 --TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDDLGVGIENKIIM 329
               T    +TF+   DAV+  +PLGVLK +   ++F P LP+WK +A+  +G G  NK+++
Sbjct:   508 VNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVL 567

Query:   330 HFDKVFW-PNVEFLGVVSDT--SYGCSY-FLNLHKATGHCVLVYMPAGQLARDIEKMSDE 385
              FD+VFW P+V   G V  T  S G  + F NL+KA    +L+ + AG+ A  +E +SD+
Sbjct:   568 CFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLALVAGEAAGIMENISDD 624

Query:   386 AAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVD 443
                      LK I   ++   P + +VS W  D  + GSYSY   G S + Y+ +  P+ 
Sbjct:   625 VIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPIT 684

Query:   444 -------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 471
                           LFFAGE T  +YP +VHGA  +GL  A
Sbjct:   685 PGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 725

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0000790 "nuclear chromatin" evidence=IEA;ISO

GO:0001085 "RNA polymerase II transcription factor binding" evidence=IEA;ISO

GO:0001701 "in utero embryonic development" evidence=IEA;ISO

GO:0002039 "p53 binding" evidence=IEA;ISO

GO:0003682 "chromatin binding" evidence=IEA;ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005667 "transcription factor complex" evidence=IEA;ISO

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0006482 "protein demethylation" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0008283 "cell proliferation" evidence=IEA;ISO

GO:0010725 "regulation of primitive erythrocyte differentiation" evidence=IEA;ISO

GO:0016491 "oxidoreductase activity" evidence=IEA;ISO

GO:0019899 "enzyme binding" evidence=IEA;ISO

GO:0021983 "pituitary gland development" evidence=IEA;ISO

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=IEA;ISO

GO:0030851 "granulocyte differentiation" evidence=IEA;ISO

GO:0032091 "negative regulation of protein binding" evidence=IEA;ISO

GO:0032451 "demethylase activity" evidence=ISO

GO:0032452 "histone demethylase activity" evidence=ISO

GO:0032453 "histone demethylase activity (H3-K4 specific)" evidence=ISO

GO:0032454 "histone demethylase activity (H3-K9 specific)" evidence=IEA;ISO

GO:0033169 "histone H3-K9 demethylation" evidence=ISO

GO:0034648 "histone demethylase activity (H3-dimethyl-K4 specific)" evidence=IEA;ISO

GO:0034720 "histone H3-K4 demethylation" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=IEA;ISO

GO:0043426 "MRF binding" evidence=IEA;ISO

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=IEA;ISO

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IEA;ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA;ISO

GO:0045648 "positive regulation of erythrocyte differentiation" evidence=IEA;ISO

GO:0045654 "positive regulation of megakaryocyte differentiation" evidence=IEA;ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0046886 "positive regulation of hormone biosynthetic process" evidence=IEA;ISO

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA;ISO

GO:0050681 "androgen receptor binding" evidence=IEA;ISO

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=IEA;ISO

GO:0051572 "negative regulation of histone H3-K4 methylation" evidence=IEA;ISO

GO:0051573 "negative regulation of histone H3-K9 methylation" evidence=IEA;ISO

GO:0055001 "muscle cell development" evidence=IEA;ISO

GO:2000179 "positive regulation of neural precursor cell proliferation" evidence=IEA;ISO

GO:2000648 "positive regulation of stem cell proliferation" evidence=IEA;ISO

UNIPROTKB|E2RNL9 KDM1A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 384 (140.2 bits), Expect = 1.3e-43, Sum P(2) = 1.3e-43
 Identities = 114/341 (33%), Positives = 175/341 (51%)

Query:   162 SILKETDKVREEHDEDMSIQRAISIVFDRRP-ELRLEGLAHKVLQWYLCRMEGWFAADAE 220
             ++ KE D++ E   +   ++  +  +    P ++ L     ++L W+   +E   A    
Sbjct:   513 ALCKEYDELAETQGK---LEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLS 569

Query:   221 TISLKSWDKEE--LLPGGHGLMVR-GYLPVINTLAKGLDIRLGHRVTKITRHYIGVKV-- 275
             T+SLK WD+++     G H L VR GY  V   LA+GLDI+L   V ++     G +V  
Sbjct:   570 TLSLKHWDQDDDFEFTGSH-LTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIA 628

Query:   276 --TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDDLGVGIENKIIM 329
               T    +TF+   DAV+  +PLGVLK +   ++F P LP+WK +A+  +G G  NK+++
Sbjct:   629 VNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVL 688

Query:   330 HFDKVFW-PNVEFLGVVSDT--SYGCSY-FLNLHKATGHCVLVYMPAGQLARDIEKMSDE 385
              FD+VFW P+V   G V  T  S G  + F NL+KA    +L+ + AG+ A  +E +SD+
Sbjct:   689 CFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLALVAGEAAGIMENISDD 745

Query:   386 AAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVD 443
                      LK I   ++   P + +VS W  D  + GSYSY   G S + Y+ +  P+ 
Sbjct:   746 VIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPIT 805

Query:   444 -------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 471
                           LFFAGE T  +YP +VHGA  +GL  A
Sbjct:   806 PGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 846

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0034720 "histone H3-K4 demethylation" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F6S0T5 KDM1A "Lysine-specific histone demethylase 1A" [Homo sapiens (taxid:9606)]

 Score = 384 (140.2 bits), Expect = 1.3e-43, Sum P(2) = 1.3e-43
 Identities = 114/341 (33%), Positives = 175/341 (51%)

Query:   162 SILKETDKVREEHDEDMSIQRAISIVFDRRP-ELRLEGLAHKVLQWYLCRMEGWFAADAE 220
             ++ KE D++ E   +   ++  +  +    P ++ L     ++L W+   +E   A    
Sbjct:   513 ALCKEYDELAETQGK---LEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLS 569

Query:   221 TISLKSWDKEE--LLPGGHGLMVR-GYLPVINTLAKGLDIRLGHRVTKITRHYIGVKV-- 275
             T+SLK WD+++     G H L VR GY  V   LA+GLDI+L   V ++     G +V  
Sbjct:   570 TLSLKHWDQDDDFEFTGSH-LTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIA 628

Query:   276 --TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDDLGVGIENKIIM 329
               T    +TF+   DAV+  +PLGVLK +   ++F P LP+WK +A+  +G G  NK+++
Sbjct:   629 VNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVL 688

Query:   330 HFDKVFW-PNVEFLGVVSDT--SYGCSY-FLNLHKATGHCVLVYMPAGQLARDIEKMSDE 385
              FD+VFW P+V   G V  T  S G  + F NL+KA    +L+ + AG+ A  +E +SD+
Sbjct:   689 CFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLALVAGEAAGIMENISDD 745

Query:   386 AAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVD 443
                      LK I   ++   P + +VS W  D  + GSYSY   G S + Y+ +  P+ 
Sbjct:   746 VIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPIT 805

Query:   444 -------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 471
                           LFFAGE T  +YP +VHGA  +GL  A
Sbjct:   806 PGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 846

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0034720 "histone H3-K4 demethylation" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

UNIPROTKB|F1STX7 KDM1A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 385 (140.6 bits), Expect = 1.9e-43, Sum P(2) = 1.9e-43
 Identities = 121/371 (32%), Positives = 188/371 (50%)

Query:   162 SILKETDKVREEHDEDMSIQRAISIVFDRRP-ELRLEGLAHKVLQWYLCRMEGWFAADAE 220
             ++ KE D++ E   +   ++  +  +    P ++ L     ++L W+   +E   A    
Sbjct:   490 ALCKEYDELAETQGK---LEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLS 546

Query:   221 TISLKSWDKEE--LLPGGHGLMVR-GYLPVINTLAKGLDIRLGHRVTKITRHYIGVKV-- 275
             T+SLK WD+++     G H L VR GY  V   LA+GLDI+L   V ++     G +V  
Sbjct:   547 TLSLKHWDQDDDFEFTGSH-LTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIA 605

Query:   276 --TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDDLGVGIENKIIM 329
               T    +TF+   DAV+  +PLGVLK +   ++F P LP+WK +A+  +G G  NK+++
Sbjct:   606 VNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVL 665

Query:   330 HFDKVFW-PNVEFLGVVSDT--SYGCSY-FLNLHKATGHCVLVYMPAGQLARDIEKMSDE 385
              FD+VFW P+V   G V  T  S G  + F NL+KA    +L+ + AG+ A  +E +SD+
Sbjct:   666 CFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLALVAGEAAGIMENISDD 722

Query:   386 AAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVD 443
                      LK I   ++   P + +VS W  D  + GSYSY   G S + Y+ +  P+ 
Sbjct:   723 VIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPIT 782

Query:   444 -------------NLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGELDLFQP 490
                           LFFAGE T  +YP +VHGA  +GL  A     R+ +++  L     
Sbjct:   783 PGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAG----RIADQF--LGAMYT 836

Query:   491 VMGEETPISVP 501
             +  + TP SVP
Sbjct:   837 LPRQATP-SVP 846

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0034720 "histone H3-K4 demethylation" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LYT1	PAO3_ARATH	1, ., 5, ., 3, ., 1, 7	0.7672	0.9625	1.0	no	no
Q9SKX5	PAO2_ARATH	1, ., 5, ., 3, ., -	0.7810	0.9664	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.4.3.2	LOW CONFIDENCE prediction!
3rd Layer	1.5.3.17	LOW CONFIDENCE prediction!
3rd Layer	1.5.3	0.983

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.II.1985.1 polyamine oxidase (EC-1.5.3.11) (513 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	507
PLN02268	435	PLN02268, PLN02268, probable polyamine oxidase	0.0
pfam01593	444	pfam01593, Amino_oxidase, Flavin containing amine	7e-92
PLN02976	1713	PLN02976, PLN02976, amine oxidase	1e-74
PLN02529	738	PLN02529, PLN02529, lysine-specific histone demeth	2e-63
PLN02676	487	PLN02676, PLN02676, polyamine oxidase	2e-59
PLN03000	881	PLN03000, PLN03000, amine oxidase	1e-55
PLN02328	808	PLN02328, PLN02328, lysine-specific histone demeth	2e-54
COG1231	450	COG1231, COG1231, Monoamine oxidase [Amino acid tr	2e-42
PLN02568	539	PLN02568, PLN02568, polyamine oxidase	2e-30
COG1232	444	COG1232, HemY, Protoporphyrinogen oxidase [Coenzym	2e-23
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	6e-14
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	5e-12
PLN02568	539	PLN02568, PLN02568, polyamine oxidase	7e-12
PRK11883	451	PRK11883, PRK11883, protoporphyrinogen oxidase; Re	1e-08
PRK07233	434	PRK07233, PRK07233, hypothetical protein; Provisio	9e-08
TIGR02734	502	TIGR02734, crtI_fam, phytoene desaturase	8e-07
COG1148	622	COG1148, HdrA, Heterodisulfide reductase, subunit	2e-06
COG3349	485	COG3349, COG3349, Uncharacterized conserved protei	2e-06
PLN02612	567	PLN02612, PLN02612, phytoene desaturase	6e-06
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	6e-06
COG2072	443	COG2072, TrkA, Predicted flavoprotein involved in	8e-06
pfam00890	401	pfam00890, FAD_binding_2, FAD binding domain	1e-05
COG3380	331	COG3380, COG3380, Predicted NAD/FAD-dependent oxid	3e-05
PLN02612	567	PLN02612, PLN02612, phytoene desaturase	4e-05
PRK12834	549	PRK12834, PRK12834, putative FAD-binding dehydroge	5e-05
TIGR02733	492	TIGR02733, desat_CrtD, C-3',4' desaturase CrtD	7e-05
TIGR02731	453	TIGR02731, phytoene_desat, phytoene desaturase	7e-05
TIGR00562	462	TIGR00562, proto_IX_ox, protoporphyrinogen oxidase	1e-04
PLN02576	496	PLN02576, PLN02576, protoporphyrinogen oxidase	1e-04
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	1e-04
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	1e-04
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	1e-04
TIGR01372	985	TIGR01372, soxA, sarcosine oxidase, alpha subunit	2e-04
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	2e-04
PRK07233	434	PRK07233, PRK07233, hypothetical protein; Provisio	3e-04
COG3573	552	COG3573, COG3573, Predicted oxidoreductase [Genera	3e-04
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	3e-04
PRK07208	479	PRK07208, PRK07208, hypothetical protein; Provisio	4e-04
PRK11883	451	PRK11883, PRK11883, protoporphyrinogen oxidase; Re	5e-04
COG3349	485	COG3349, COG3349, Uncharacterized conserved protei	5e-04
TIGR02731	453	TIGR02731, phytoene_desat, phytoene desaturase	5e-04
PRK04176	257	PRK04176, PRK04176, ribulose-1,5-biphosphate synth	5e-04
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	6e-04
PRK06416	462	PRK06416, PRK06416, dihydrolipoamide dehydrogenase	0.001
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	0.001
TIGR02732	474	TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carot	0.001
pfam12831	415	pfam12831, FAD_oxidored, FAD dependent oxidoreduct	0.001
COG2907	447	COG2907, COG2907, Predicted NAD/FAD-binding protei	0.001
TIGR00292	254	TIGR00292, TIGR00292, thiazole biosynthesis enzyme	0.002
COG1635	262	COG1635, THI4, Ribulose 1,5-bisphosphate synthetas	0.002
PRK02705	459	PRK02705, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	0.003
TIGR02032	295	TIGR02032, GG-red-SF, geranylgeranyl reductase fam	0.003
PRK11749	457	PRK11749, PRK11749, dihydropyrimidine dehydrogenas	0.003
PRK12843	578	PRK12843, PRK12843, putative FAD-binding dehydroge	0.004
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	0.004
PLN02487	569	PLN02487, PLN02487, zeta-carotene desaturase	0.004
PRK01747	662	PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-	0.004

>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase

 Score =  916 bits (2369), Expect = 0.0
 Identities = 366/451 (81%), Positives = 398/451 (88%), Gaps = 16/451 (3%)

Query: 29  PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVC 88
           PSVIVIG G+AG+AAARALHDASFKV LLESRDR+GGRVHTDYSFGFPVD+GASWLHGVC
Sbjct: 1   PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVC 60

Query: 89  QENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQV 148
            ENPLAP+I RLGLPLYRTSGDNSVLYDHDLES                YALFDMDGNQV
Sbjct: 61  NENPLAPLIGRLGLPLYRTSGDNSVLYDHDLES----------------YALFDMDGNQV 104

Query: 149 PQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYL 208
           PQELVTKVGE FE IL+ET+KVR+EH+EDMS+ +AISIV +R PELRLEGLAH+VLQWYL
Sbjct: 105 PQELVTKVGETFERILEETEKVRDEHEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYL 164

Query: 209 CRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITR 268
           CRMEGWFAADA+TISLKSWD+EELL GGHGLMVRGY PVINTLAKGLDIRL HRVTKI R
Sbjct: 165 CRMEGWFAADADTISLKSWDQEELLEGGHGLMVRGYDPVINTLAKGLDIRLNHRVTKIVR 224

Query: 269 HYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKII 328
            Y GVKVTVE G TFVADA ++AVPLGVLKA  IKFEP LP+WKE AI DLGVGIENKI 
Sbjct: 225 RYNGVKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIA 284

Query: 329 MHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAA 388
           +HFD VFWPNVEFLGVV+ TSYGCSYFLNLHKATGH VLVYMPAG+LARDIEK+SDEAAA
Sbjct: 285 LHFDSVFWPNVEFLGVVAPTSYGCSYFLNLHKATGHPVLVYMPAGRLARDIEKLSDEAAA 344

Query: 389 NFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFA 448
           NFA +QLKK+LPDA+ P+QYLVS WG+D NSLG YSYD VGK HDLYERLR PVDNLFFA
Sbjct: 345 NFAMSQLKKMLPDATEPVQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFA 404

Query: 449 GEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 479
           GEATS  +PGSVHGA+STG+MAAE+CRMR+L
Sbjct: 405 GEATSSDFPGSVHGAYSTGVMAAEECRMRLL 435

Length = 435

>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase

 Score =  286 bits (734), Expect = 7e-92
 Identities = 155/453 (34%), Positives = 211/453 (46%), Gaps = 26/453 (5%)

Query: 38  MAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQE--NPLAP 95
           +AG+AAAR L  A F V +LE+RDRVGGR+ T    GF ++LGA W HG      N L  
Sbjct: 1   LAGLAAARELLRAGFDVTVLEARDRVGGRIRTVRFDGFLIELGAQWFHGAYPNLLNLLLE 60

Query: 96  VISRLGLPLYRTSGDNSVLYDHDLESR-VLKTVVVSLIQANLCYALFDMDGNQVPQELVT 154
           +   LGL L+   GD  V   +       L   +   +   L   L      + P     
Sbjct: 61  LGLELGLLLFPFPGDPFVRLKYRGGPYPDLPGDLPPPLFLLLRSLLELELSLEEPIRRAL 120

Query: 155 KVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGW 214
            +  A   +  E  ++      D+        +F          L   +L   L  +   
Sbjct: 121 LLLVALLLLAPELLELDLLSFSDLLSAAGFLELFL--------LLFRSLLAGALGFLPLE 172

Query: 215 FAADAETISLKSWDKEE---LLPGGHGLMVRGYLPVINTLAKGLD---IRLGHRVTKITR 268
            +A    +SL+ +D E+   + PGG   +  G LP +   A GL    +RL  RV  IT+
Sbjct: 173 LSARLALLSLRLFDLEDGGVVFPGGGFTLPLGGLPQLIAAALGLLGGRVRLNTRVRSITK 232

Query: 269 HYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKII 328
              GV VT   G+T  ADAV+V VPLGVLK   I F P LP  K+ AI +LG G  +K+ 
Sbjct: 233 SGDGVTVTTVDGRTIEADAVIVTVPLGVLK--RILFLPPLPAAKQEAIRNLGFGSVSKVF 290

Query: 329 MHFDKVFWP-NVEFLGVVSDTSYGCS-YFLNLHKATG--HCVLVYMPAGQLARDIEKMSD 384
           + F+  FWP N +  G++         Y L+   ++G    VL+    G  AR++E +SD
Sbjct: 291 LEFETPFWPENGDLFGLLVTDGLSRGGYVLDTSPSSGSGRGVLLSYVLGDAARELEDLSD 350

Query: 385 EAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV 442
           E         L+K+L       P+ +LVS W TD  + GSYSY  VG        LR PV
Sbjct: 351 EELLEAVLRDLRKLLGPEDVPDPVNFLVSDWHTDPYARGSYSYPPVGDDSRYRPALRTPV 410

Query: 443 D-NLFFAGEATSMSYPGSVHGAFSTGLMAAEDC 474
              LFFAGE TS  YPG+V GA  +GL AA   
Sbjct: 411 GPGLFFAGEHTSGGYPGTVEGAVESGLRAARRV 443

This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. Length = 444

>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase

 Score =  256 bits (656), Expect = 1e-74
 Identities = 170/512 (33%), Positives = 248/512 (48%), Gaps = 99/512 (19%)

Query: 31   VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY-SFGFPVDLGASWLHGVCQ 89
            +IV+GAG AG+ AAR L    F V +LE+R R+GGRV+TD  S   PVDLGAS + GV  
Sbjct: 696  IIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEA 755

Query: 90   E-------NPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFD 142
            +       +P + + ++LGL L   + D   LYD           VV+            
Sbjct: 756  DVATERRPDPSSLICAQLGLELTVLNSD-CPLYD-----------VVT------------ 791

Query: 143  MDGNQVPQELVTKVGEAFESILKETDKVRE---EHDEDMSIQRAISIVFDRRPELR---- 195
              G +VP +L   +   + S+L +   +     EH   MS++  +     RR   R    
Sbjct: 792  --GEKVPADLDEALEAEYNSLLDDMVLLVAQKGEHAMKMSLEDGLEYALKRRRMPRPGVD 849

Query: 196  ----------------------------------LEGLAHKVLQWYLCRMEGWFAADAET 221
                                              L  L  +V+ W+   +E   AA  + 
Sbjct: 850  IDETELGNAADDLYDSASTGVDGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAALLKE 909

Query: 222  ISLKSWDKEEL---LPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKIT----------- 267
            +SL  W+++++     G H ++  GY  V+ +LA+GLDI L H VT ++           
Sbjct: 910  VSLPYWNQDDVYGGFGGAHCMIKGGYSNVVESLAEGLDIHLNHVVTDVSYGSKDAGASGS 969

Query: 268  -RHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENK 326
             R    VKV+   G  F+ DAV++ VPLG LKA TIKF P LPDWK ++I  LG G+ NK
Sbjct: 970  SRKK--VKVSTSNGSEFLGDAVLITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFGVLNK 1027

Query: 327  IIMHFDKVFW-PNVEFLGVVS---DTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKM 382
            +++ F +VFW  +V++ G  +   D    C  F N+ K  G  VL+ +  G+ A D + M
Sbjct: 1028 VVLEFPEVFWDDSVDYFGATAEETDLRGQCFMFWNVKKTVGAPVLIALVVGKAAIDGQSM 1087

Query: 383  SDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRI 440
            S     N A   L+K+  +A    P+  +V+ WG D  S G+YSY  +G S + Y+ L  
Sbjct: 1088 SSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGR 1147

Query: 441  PVDN-LFFAGEATSMSYPGSVHGAFSTGLMAA 471
            PV+N LFFAGEAT   +P +V GA  +GL  A
Sbjct: 1148 PVENCLFFAGEATCKEHPDTVGGAMMSGLREA 1179

Length = 1713

>gnl|CDD|178144 PLN02529, PLN02529, lysine-specific histone demethylase 1

 Score =  219 bits (559), Expect = 2e-63
 Identities = 163/465 (35%), Positives = 230/465 (49%), Gaps = 58/465 (12%)

Query: 30  SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFG----FPVDLGASWLH 85
           SVI++GAG+AG+AAAR L    FKVV+LE R+R GGRV+T           VDLG S + 
Sbjct: 162 SVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVIT 221

Query: 86  GVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDG 145
           G+   NPL  +  +L +PL++   DN  LY                            DG
Sbjct: 222 GI-HANPLGVLARQLSIPLHKVR-DNCPLYKP--------------------------DG 253

Query: 146 NQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISI--VFDRRPELRLEGLA--- 200
             V +E+ + +   F  +L   DKV E           IS+  V +R  +L     +   
Sbjct: 254 ALVDKEIDSNIEFIFNKLL---DKVTELRQIMGGFANDISLGSVLERLRQLYGVARSTEE 310

Query: 201 HKVLQWYLCRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIR 258
            ++L W+L  +E   A     +S   WD+++   + G H  +  G   +IN L +G+ I 
Sbjct: 311 RQLLDWHLANLEYANAGCLSDLSAAYWDQDDPYEMGGDHCFLAGGNWRLINALCEGVPIF 370

Query: 259 LGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDD 318
            G  V  I     GV+V + G + F AD V+  VPLGVLK RTI+FEP LP  K AAID 
Sbjct: 371 YGKTVDTIKYGNDGVEV-IAGSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDR 429

Query: 319 LGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG-CSYFL--NLHKATGHCVLVYMPAGQ 374
           LG G+ NK+ M F  VFW   ++  G ++++S     +FL    H  +G   LV + AG+
Sbjct: 430 LGFGLLNKVAMVFPSVFWGEELDTFGCLNESSNKRGEFFLFYGYHTVSGGPALVALVAGE 489

Query: 375 LARDIEKMSDEAAANFAFTQLKKI-------LPDASSPIQYLVSHWGTDANSLGSYSYDT 427
            A+  E        +   + L+ I       +PD   PIQ + + WG+D  S GSYS+  
Sbjct: 490 AAQRFENTDPSTLLHRVLSVLRGIYNPKGINVPD---PIQTICTRWGSDPLSYGSYSHVR 546

Query: 428 VGKSHDLYERLRIPVDN-LFFAGEATSMSYPGSVHGAFSTGLMAA 471
           V  S   Y+ L   V   LFFAGEAT+  YP ++HGAF +GL  A
Sbjct: 547 VQSSGSDYDILAESVSGRLFFAGEATTRQYPATMHGAFLSGLREA 591

Length = 738

>gnl|CDD|215362 PLN02676, PLN02676, polyamine oxidase

 Score =  203 bits (518), Expect = 2e-59
 Identities = 140/489 (28%), Positives = 217/489 (44%), Gaps = 87/489 (17%)

Query: 27  RSPSVIVIGAGMAGVAAARALHDASFK-VVLLESRDRVGGRVHTDYSFGFPVDLGASWLH 85
            SPSVI++GAGM+G++AA+ L +A  + +++LE+ DR+GGR+      G  V+LGA+W+ 
Sbjct: 25  PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELGANWVE 84

Query: 86  GV--CQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDM 143
           GV   + NP+  + ++L L  + +        D D                NL   ++  
Sbjct: 85  GVGGPESNPIWELANKLKLRTFYS--------DFD----------------NLSSNIYKQ 120

Query: 144 DGNQVPQELVTKV----GEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGL 199
           DG   P+++V K       + E     +  +  +   D+SI  A  + F + P+  LE  
Sbjct: 121 DGGLYPKKVVQKSMKVADASDEFGENLSISLSAKKAVDISILTAQRL-FGQVPKTPLE-- 177

Query: 200 AHKVLQWYLCRMEGWFAADAETISLKSWDKEELLP-----GGHGLMV---RGYLPVINTL 251
              V+ +Y    E      AE   + S    E  P     G     V   RGY  ++  L
Sbjct: 178 --MVIDYYNYDYE-----FAEPPRVTSLKNTEPNPTFVDFGEDEYFVADPRGYESLVYYL 230

Query: 252 AKG---------LDIRL--GHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKAR 300
           A+           D RL     V +I+    GV V  E G  + A  V+V+V LGVL++ 
Sbjct: 231 AEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVLQSD 290

Query: 301 TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHK 360
            IKF+P LPDWK  AI    + +  KI + F   FWP          +  G  +FL  H+
Sbjct: 291 LIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWP----------SGPGTEFFLYAHE 340

Query: 361 ATGH---------------CVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL-PDASS 404
             G+                + V +   + +R IE+  D          L+K+  P+   
Sbjct: 341 RRGYYPFWQHLENEYPGSNVLFVTVTDEE-SRRIEQQPDSETKAEIMEVLRKMFGPNIPE 399

Query: 405 PIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAF 464
               LV  W ++    GSYS   +G S   ++++R PV  ++F GE TS  Y G VHGA+
Sbjct: 400 ATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYNGYVHGAY 459

Query: 465 STGLMAAED 473
             G+  A D
Sbjct: 460 LAGIDTAND 468

Length = 487

>gnl|CDD|178578 PLN03000, PLN03000, amine oxidase

 Score =  199 bits (507), Expect = 1e-55
 Identities = 159/478 (33%), Positives = 226/478 (47%), Gaps = 69/478 (14%)

Query: 25  QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY----SFGFPVDLG 80
           Q+   SV+++GAG++G+AAAR L    FKV +LE R R GGRV+T        G   DLG
Sbjct: 181 QSSKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLG 240

Query: 81  ASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYAL 140
            S L G    NPL  +  +LG  LY+                            + C  L
Sbjct: 241 GSVLTGT-LGNPLGIIARQLGSSLYKVR--------------------------DKC-PL 272

Query: 141 FDMDGNQVPQELVTKVGEAFESILKETDKVRE---EHDEDMSIQRAISIVFDRRPELRLE 197
           + +DG  V  ++  KV  AF  +L +  K+R+   +   D+S+  A+   F +     + 
Sbjct: 273 YRVDGKPVDPDVDLKVEVAFNQLLDKASKLRQLMGDVSMDVSLGAALE-TFRQVSGNDVA 331

Query: 198 GLAHKVLQWYLCRMEGWFAADAETISLKSWDKEE---------LLPGGHGLMVRGYLPVI 248
                +  W+L  +E   A     +SL  WD+++          LPGG+G +V+      
Sbjct: 332 TEEMGLFNWHLANLEYANAGLVSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQ------ 385

Query: 249 NTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRL 308
             LA+ + I     V  I     GVKV   G + +  D V+  VPLGVLK  +IKF P L
Sbjct: 386 -ALAENVPILYEKTVQTIRYGSNGVKVIA-GNQVYEGDMVLCTVPLGVLKNGSIKFVPEL 443

Query: 309 PDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVS-DTSYGCSYFLNLHKAT--GH 364
           P  K   I  LG G+ NK+ M F  VFW  +++  G ++ D +Y   +FL    A   G 
Sbjct: 444 PQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFYSYAPVAGG 503

Query: 365 CVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKI-------LPDASSPIQYLVSHWGTDA 417
            +L+ + AG+ A   E M    A       L+ I       +PD   P+Q + + WG D 
Sbjct: 504 PLLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPD---PLQTVCTRWGGDP 560

Query: 418 NSLGSYSYDTVGKSHDLYERLRIPVDN--LFFAGEATSMSYPGSVHGAFSTGLMAAED 473
            SLGSYS   VG S D Y+ L   V +  LFFAGEAT+  YP ++HGAF TGL  A +
Sbjct: 561 FSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAAN 618

Length = 881

>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog

 Score =  195 bits (497), Expect = 2e-54
 Identities = 158/488 (32%), Positives = 229/488 (46%), Gaps = 80/488 (16%)

Query: 29  PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPV----DLGASWL 84
            +V+V+GAG+AG+ AAR L    FKVV+LE R R GGRV T    G  V    DLG S L
Sbjct: 239 ANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVL 298

Query: 85  HGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMD 144
            G+   NPL  +  +LGLPL++                            ++C  L+  D
Sbjct: 299 TGI-NGNPLGVLARQLGLPLHKVR--------------------------DIC-PLYLPD 330

Query: 145 GNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV- 203
           G  V  E+ +K+  +F  +L    K+R+   E++      S+  +    L      +KV 
Sbjct: 331 GKAVDAEIDSKIEASFNKLLDRVCKLRQAMIEEVK-----SVDVNLGTALEAFRHVYKVA 385

Query: 204 --------LQWYLCRMEGWFAADAETISLKSWDKEE---------LLPGGHGLMVRGYLP 246
                   L W+L  +E   A+    +S+  WD+++          +PGG+   VR    
Sbjct: 386 EDPQERMLLNWHLANLEYANASLMSNLSMAYWDQDDPYEMGGDHCFIPGGNDTFVR---- 441

Query: 247 VINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEP 306
               LAK L I     V  I     GV V   GG+ F  D V+  VPLGVLK  +I+F P
Sbjct: 442 ---ELAKDLPIFYERTVESIRYGVDGVIVYA-GGQEFHGDMVLCTVPLGVLKKGSIEFYP 497

Query: 307 RLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLG-VVSDTSYGCSYFL--NLHKAT 362
            LP  K+ AI  LG G+ NK+ + F   FW   ++  G +  D S    +FL  +    +
Sbjct: 498 ELPQRKKDAIQRLGYGLLNKVALLFPYNFWGGEIDTFGHLTEDPSMRGEFFLFYSYSSVS 557

Query: 363 GHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKI-------LPDASSPIQYLVSHWGT 415
           G  +L+ + AG  A   E +S   +       L+ I       +PD   P+Q + + WG 
Sbjct: 558 GGPLLIALVAGDAAVKFETLSPVESVKRVLQILRGIFHPKGIVVPD---PVQAVCTRWGK 614

Query: 416 DANSLGSYSYDTVGKSHDLYERLRIPVDN--LFFAGEATSMSYPGSVHGAFSTGLMAAED 473
           D  + GSYSY  VG S D Y+ L   V +  +FFAGEAT+  YP ++HGAF +G+  A +
Sbjct: 615 DCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNKQYPATMHGAFLSGMREAAN 674

Query: 474 CRMRVLER 481
             +RV  R
Sbjct: 675 I-LRVARR 681

Length = 808

>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism]

 Score =  156 bits (397), Expect = 2e-42
 Identities = 119/457 (26%), Positives = 182/457 (39%), Gaps = 36/457 (7%)

Query: 28  SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGV 87
           +  VI++GAG+AG++AA  L  A ++V +LE+RDRVGGR  T  + G   DLG  +++  
Sbjct: 7   TADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYINP- 65

Query: 88  CQENPLAPVISRLGLPLYRT--SGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDG 145
              + L       G+PL      GDN + Y    +S    T   SL  A       D+ G
Sbjct: 66  -THDALLAYAKEFGVPLEPFIRDGDNVIGYVGSSKS----TPKRSLTAAA------DVRG 114

Query: 146 NQVPQELVTKVGEAFESILKETDKVREE---HDEDMSIQRAISIVFDRRPELRLEGLAHK 202
                E   +     +  L   D+  +         S  R       R P  R+     +
Sbjct: 115 LVAELEAKARSAGELDPGLTPEDRELDLESLAAWKTSSLRG----LSRDPGARVSPGPIE 170

Query: 203 VLQWYLC--RMEGWFAADAET-ISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRL 259
                L    +    A+  +  I  +   +     GG   +   +   + T      I L
Sbjct: 171 PGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQRLGGMDQLAEAFAKQLGTR-----ILL 225

Query: 260 GHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDL 319
              V +I +   GV VT +    +VAD V+V +PL +L    I F P LP   + A   +
Sbjct: 226 NEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIPLAIL--GQIDFAPLLPAEYKQAAKGV 283

Query: 320 GVGIENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATGHCVLV-YMPAGQLA 376
             G   KI + F + FW     LG   ++D   G   + +   A G  VL+     G  A
Sbjct: 284 PYGSATKIGVAFSRPFWEEAGILGGESLTDLGLGFISYPSAPFADGPGVLLGSYAFGDDA 343

Query: 377 RDIEKMSDEAAANFAFTQLKKILPD-ASSPIQYLVSH-WGTDANSLGSYSYDTVGKSHDL 434
             I+ + +         +L K+  D A+ P  Y  S  W  D  +LG  +    G+   L
Sbjct: 344 LVIDALPEAERRQKVLARLAKLFGDEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKL 403

Query: 435 YERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 471
           Y  L  P   + FAG   +  + G + GA  +G  AA
Sbjct: 404 YPTLPAPHGRIHFAGTEHASEFGGWLEGAIRSGQRAA 440

Length = 450

>gnl|CDD|215308 PLN02568, PLN02568, polyamine oxidase

 Score =  124 bits (312), Expect = 2e-30
 Identities = 103/330 (31%), Positives = 144/330 (43%), Gaps = 68/330 (20%)

Query: 216 AADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLD---IRLGHRVTKITRHYIG 272
           A D  T+ L +  +  + PG    + +GYL VI  LA  L    I+LG +VT+I      
Sbjct: 213 ADDLSTLDLAAESEYRMFPGEEITIAKGYLSVIEALASVLPPGTIQLGRKVTRIEWQDEP 272

Query: 273 VKVTVEGGKTFVADAVVVAVPLGVLKARTIK----FEPRLPDWKEAAIDDLGVGIENKII 328
           VK+    G T  AD V+V V LGVLKA   +    F P LPD+K  AI  LG G+ NK+ 
Sbjct: 273 VKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPDFKTDAISRLGFGVVNKLF 332

Query: 329 MHFDKVF---------WPNVE--FLGVVSDTSY--------GCSYFLNLHKATGHCVLVY 369
           +               +P ++  F    S+  +          +    +HK +   VL+ 
Sbjct: 333 VELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPIHKNSS--VLLS 390

Query: 370 MPAGQLARDIEKMSDEAAANFAFTQLKKILP----------------DASSP-------I 406
             AG+ A ++EK+SDE       T L   L                  ASS        +
Sbjct: 391 WFAGKEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFV 450

Query: 407 QYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDN-------------LFFAGEATS 453
           + L S WGTD   LGSYSY  VG S D  +R+  P+               L FAGEAT 
Sbjct: 451 KVLKSKWGTDPLFLGSYSYVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATH 510

Query: 454 MSYPGSVHGAFSTGLMAAEDCRMRVLERYG 483
            ++  + HGA+ +GL  A     R+L+ Y 
Sbjct: 511 RTHYSTTHGAYFSGLREAN----RLLQHYK 536

Length = 539

>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism]

 Score =  102 bits (257), Expect = 2e-23
 Identities = 89/417 (21%), Positives = 148/417 (35%), Gaps = 64/417 (15%)

Query: 30  SVIVIGAGMAGVAAARALH--DASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGV 87
            + +IG G+AG++AA  L       +V L E+ DRVGG + T    GF  + G       
Sbjct: 2   KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLAR 61

Query: 88  CQENPLAPVISRLGLP---LYRTSGDNSVLYD---HDLESRVLKTVVVSLIQANLCYALF 141
            +E     +I  LGL    L+ ++    + YD   H + +  +  + + L+ +    A  
Sbjct: 62  KEEIL--DLIKELGLEDKLLWNSTARKYIYYDGKLHPIPTPTILGIPLLLLSSEAGLARA 119

Query: 142 DMDGNQVPQELVTKVGEAFESILKE--------------TDKVREEHDEDMSIQRAISIV 187
             +    P+    K   +    ++                + +     + +S   A  I+
Sbjct: 120 LQEFI-RPKSWEPKQDISVGEFIRRRFGEEVVERFIEPLLEGIYAGDADKLSAAAAFPIL 178

Query: 188 FDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPV 247
              R E +   L           + G         SLK   KE+        +  G   +
Sbjct: 179 A--RAERKYGSL-----------LRGAKKEGLPKQSLK---KEKFGY-----LRGGLQSL 217

Query: 248 INTLAKGL--DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFE 305
           I  LA+ L   IR G  VTKI +   G  +   GG+   AD V+   PL  L AR +  E
Sbjct: 218 IEALAEKLEAKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPEL-ARLLGDE 276

Query: 306 PRLPDWKEAAIDDL---GVGIENKIIMHFDKVFWPNVE-----FLGVVSDTSYGCSYFLN 357
                 KE     +    VG++ K        +   +       L +   ++        
Sbjct: 277 AVSKAAKELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDPYILAITFHSNK------W 330

Query: 358 LHKATGHCVLVYMPAGQLARD-IEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHW 413
            H+A     L+ +  G    + +  MSDE         LKK+      P+   V+ W
Sbjct: 331 PHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKLGGINGDPVFVEVTRW 387

Length = 444

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 66.3 bits (163), Expect = 6e-14
 Identities = 20/54 (37%), Positives = 32/54 (59%)

Query: 33 VIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHG 86
          ++GAG++G+ AA  L      V++LE RDR+GG  +++   G+  D GA   H 
Sbjct: 1  IVGAGLSGLVAAYLLAKRGKDVLVLEKRDRIGGNAYSERDPGYRHDYGAHIFHT 54

Length = 66

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 67.5 bits (165), Expect = 5e-12
 Identities = 102/510 (20%), Positives = 163/510 (31%), Gaps = 100/510 (19%)

Query: 27  RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASW--- 83
               V+VIGAG+ G+AAA  L  A  KV +LE  DRVGGR  T    GF  D G SW   
Sbjct: 2   PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLM 61

Query: 84  --------LHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQAN 135
                     G    + L  +       ++   GD   +Y  DLE+           +  
Sbjct: 62  PDPGPLFRELGNLDADGLDLLPPDPAYRVFLPDGDAIDVY-TDLEA---------TAELL 111

Query: 136 LCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDM-SIQRAISIVFDRRPEL 194
                 D              GEA    L+   ++ E     + +  R+  ++    PE 
Sbjct: 112 ESLEPGD--------------GEALARYLRLLARLYELLAALLLAPPRSELLLVPDTPER 157

Query: 195 RLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGG--------------HGLM 240
            L  L      + L     +F     +  L++      + GG              H  +
Sbjct: 158 LLRLLG-----FSLTSALDFFRGRFGSELLRALLAYSAVYGGAPPSTPPALYLLLSHLGL 212

Query: 241 VRG-YLP------VINTLAK-----GLDIRLGHRVTKI-TRHYIGVKVTVEGGKTFVADA 287
             G + P      +++ LA+     G +IR G  V++I      GV V    G+   ADA
Sbjct: 213 SGGVFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADA 272

Query: 288 VVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGV----GIENKII---MHFDKVFWPNVE 340
           VV       L AR +    R             +    G++  ++    H   +     E
Sbjct: 273 VVSNA-DPALLARLLGEARRPRYRGSYLKSLSALSLYLGLKGDLLPLAHHTTILLGDTRE 331

Query: 341 FLGVVSDTSYG--CSYFLNLHKAT-------GHCVLVYMPAG-QLARDIEKMSDEAAANF 390
            +    D   G     ++++   T       G               D +++ +  A   
Sbjct: 332 QIEEAFDDRAGRPPPLYVSIPSLTDPSLAPEGKHSTFAQLVPVPSLGDYDELKESLADAI 391

Query: 391 AFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGK-SHDL----YERL---RIPV 442
               L+++ P     I         D           +   +H L      R      P+
Sbjct: 392 D--ALEELAPGLRDRIVAREVLTPLDLERYLGLPGGDIFGGAHTLDQLGPFRPPPKSTPI 449

Query: 443 DNLFFAGEATSMSYPGS-VHGAFSTGLMAA 471
             L+  G +T   +PG  V G   +    A
Sbjct: 450 KGLYLVGAST---HPGGGVPGVPGSAAAVA 476

Length = 487

>gnl|CDD|215308 PLN02568, PLN02568, polyamine oxidase

 Score = 67.5 bits (165), Expect = 7e-12
 Identities = 27/67 (40%), Positives = 47/67 (70%), Gaps = 5/67 (7%)

Query: 26 ARSPSVIVIGAGMAGVAAARALHDAS-----FKVVLLESRDRVGGRVHTDYSFGFPVDLG 80
          A+ P +++IGAGMAG+ AA  L+ +S     F++ ++E  DR+GGR++T    G  +++G
Sbjct: 3  AKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGGERIEMG 62

Query: 81 ASWLHGV 87
          A+W+HG+
Sbjct: 63 ATWIHGI 69

Length = 539

>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed

 Score = 57.2 bits (139), Expect = 1e-08
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 29 PSVIVIGAGMAGVAAARALH--DASFKVVLLESRDRVGGRVHTDYSFGFPVDLGA 81
            V +IG G+ G++AA  LH       + LLE+ DR+GG++ T    GFP++LG 
Sbjct: 1  KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGP 55

Length = 451

>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional

 Score = 54.1 bits (131), Expect = 9e-08
 Identities = 52/194 (26%), Positives = 80/194 (41%), Gaps = 34/194 (17%)

Query: 225 KSWDKEELLPGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGVKVTVEG 279
            S   E+L     G +  G+  +I+ LA+     G +IRLG  VT +     GV      
Sbjct: 183 YSLFGEKL-----GYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVD 237

Query: 280 GKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDK----VF 335
           G+    DAV+   P  +L AR +   P     +   ID  GV     +++   +     +
Sbjct: 238 GEEEDFDAVISTAPPPIL-ARLVPDLPADVLARLRRIDYQGVVC---MVLKLRRPLTDYY 293

Query: 336 WPNV-----EFLGVVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIEK--MSDEAA 387
           W N+      F GV+  T+      +   +  G H  LVY+P   L  D     MSDE  
Sbjct: 294 WLNINDPGAPFGGVIEHTN-----LVPPERYGGEH--LVYLPK-YLPGDHPLWQMSDEEL 345

Query: 388 ANFAFTQLKKILPD 401
            +   + L+K+ PD
Sbjct: 346 LDRFLSYLRKMFPD 359

Length = 434

>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase

 Score = 51.1 bits (123), Expect = 8e-07
 Identities = 21/54 (38%), Positives = 28/54 (51%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWL 84
           +VIGAG  G+A A  L  A   V ++E RD+ GGR       GF  D G + +
Sbjct: 1  AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVI 54

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 502

>gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 9/74 (12%)

Query: 28  SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGV 87
           S SV+VIG G+AG+ AA  L D  FKV L+E    +GGR+    +  FP +         
Sbjct: 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAK-LNKTFPTN--------D 174

Query: 88  CQENPLAPVISRLG 101
           C    LAP +  + 
Sbjct: 175 CSICILAPKMVEVS 188

Length = 622

>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function unknown]

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 21/37 (56%), Positives = 28/37 (75%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67
          V + GAG+AG+AAA  L DA + V L E+RDR+GG+V
Sbjct: 3  VAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKV 39

Length = 485

>gnl|CDD|215330 PLN02612, PLN02612, phytoene desaturase

 Score = 48.7 bits (116), Expect = 6e-06
 Identities = 68/275 (24%), Positives = 109/275 (39%), Gaps = 54/275 (19%)

Query: 252 AKGLDIRLGHRVTKITRHYIG-VK-VTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLP 309
           + G ++RL  R+ KI  +  G VK   +  G     D  V A P+ +LK         LP
Sbjct: 320 SLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLL-------LP 372

Query: 310 D-WKE----AAIDDL-GVGIEN-------KIIMHFDKVFWPNVEFLGVVSDTSYGCSYFL 356
           D WKE      +D L GV + N       K+   +D + +     L V +D S  C  + 
Sbjct: 373 DQWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNTYDHLLFSRSPLLSVYADMSTTCKEYY 432

Query: 357 NLHKATGHCVLVYMPAGQ-LARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGT 415
           + +K+     LV+ PA + ++R     SDE   +    +L K+ PD  S           
Sbjct: 433 DPNKSM--LELVFAPAEEWISR-----SDEDIIDATMKELAKLFPDEIS----------A 475

Query: 416 DANSLGSYSYDTVGKSHDLYERL----------RIPVDNLFFAGEATSMSYPGSVHGAFS 465
           D +      Y  V     +Y+ +          R P++  + AG+ T   Y  S+ GA  
Sbjct: 476 DQSKAKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVL 535

Query: 466 TGLMAAEDCRMRVLERYGELDLFQPVMGEETPISV 500
           +G +    C   +++ Y  L    P    E  +S 
Sbjct: 536 SGKL----CAQSIVQDYELLAARGPRKLSEATVSS 566

Length = 567

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68
          V+++GAG AG +AAR L  A   V++LE     G +  
Sbjct: 6  VVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPC 43

Length = 396

>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 21/43 (48%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 24 GQARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRDRVGG 65
          G A    V +IGAG +G+AAA AL  A     V+ E RD VGG
Sbjct: 4  GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGG 46

Length = 443

>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFG 74
          V+VIG+G+AG+AAA    +A  KV ++E     GG   T +S G
Sbjct: 2  VVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGG--ATAWSSG 43

This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401

>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 24/56 (42%), Positives = 34/56 (60%)

Query: 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWL 84
          PS+ ++GAG+AG+AAA AL +A  +V + E    VGGR+ T    G   D GA + 
Sbjct: 2  PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYF 57

Length = 331

>gnl|CDD|215330 PLN02612, PLN02612, phytoene desaturase

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 19/37 (51%), Positives = 29/37 (78%)

Query: 31  VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67
           V++ GAG+AG++ A+ L DA  K +LLE+RD +GG+V
Sbjct: 96  VVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKV 132

Length = 567

>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed

 Score = 45.3 bits (108), Expect = 5e-05
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 6/54 (11%)

Query: 29 PSVIVIGAGMAGVAAARALHDASFKVVLL--ESRDRVGGRVHTDYSFG--FPVD 78
            VIV+GAG+AG+ AA  L DA  +V+LL  E+   +GG+    +S G  F VD
Sbjct: 5  ADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF--WSLGGLFLVD 56

Length = 549

>gnl|CDD|233987 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 30/77 (38%), Positives = 42/77 (54%)

Query: 28  SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGV 87
             SV+VIGAG+AG+ AA  L    ++V LLE   + GG   T    GF  D+GA+ + G+
Sbjct: 1   ETSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGL 60

Query: 88  CQENPLAPVISRLGLPL 104
                 A +   LG+PL
Sbjct: 61  EPGGIHARIFRELGIPL 77

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 492

>gnl|CDD|131778 TIGR02731, phytoene_desat, phytoene desaturase

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 54/244 (22%), Positives = 101/244 (41%), Gaps = 28/244 (11%)

Query: 246 PVINTL-AKGLDIRLGHRVTKI-------TRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 297
           P+++ + ++G ++RL  R+ +I        +H++      +      ADA V A+P+ + 
Sbjct: 218 PIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIF 277

Query: 298 KA------RTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYG 351
           K       + + F  +L   +   + ++ +  + K+    D + +     L V +D S  
Sbjct: 278 KLLLPQPWKQMPFFQKLNGLEGVPVINVHIWFDRKL-TTVDHLLFSRSPLLSVYADMSET 336

Query: 352 CSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD---ASSPIQY 408
           C  + +  K+     LV+ PA     D    SDE   +    +L K+ P+   A SP + 
Sbjct: 337 CKEYADPDKSM--LELVFAPA----ADWIGRSDEEIIDATMAELAKLFPNHIKADSPAKI 390

Query: 409 LVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGL 468
           L         S+    Y T           + P+ N F AG+ T   Y  S+ GA  +G 
Sbjct: 391 LKYKVVKTPRSV----YKTTPGRQQYRPHQKTPIPNFFLAGDYTKQKYLASMEGAVLSGK 446

Query: 469 MAAE 472
           + A+
Sbjct: 447 LCAQ 450

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 453

>gnl|CDD|213540 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 68/310 (21%), Positives = 113/310 (36%), Gaps = 85/310 (27%)

Query: 31  VIVIGAGMAGVAAARALH----DASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHG 86
           V++IG G++G+ AA  L     +   ++ L+E+ DRVGG++ T    G+ ++ G      
Sbjct: 5   VVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLE 64

Query: 87  VCQENPLAP-VISRLGLP--LYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDM 143
                  AP ++  LGL   L   +     +  +  +   + T +   ++  L       
Sbjct: 65  R---KKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKTGL------- 114

Query: 144 DGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV 203
                   L  K+    + I   +        +D S++        RR          +V
Sbjct: 115 ------FSLGGKLRAGMDFIRPASP------GKDESVEE----FVRRR-------FGDEV 151

Query: 204 LQWY---LCRMEGWFAADAETISLKS-----WDKE-------------ELLPGGHGL--M 240
           ++     L    G +A D   +SLKS     +  E               LP G GL   
Sbjct: 152 VENLIEPLLS--GIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLT 209

Query: 241 VRGYLPVINTLAKGLD-----IRLGHRVTKITRHYIGVKVT------------VEGGKTF 283
            +       TLA GL+     I    ++TK+   Y G KVT            ++ G T 
Sbjct: 210 AKKQGQDFQTLATGLETLPEEIEKRLKLTKV---YKGTKVTKLSHRGSNYTLELDNGVTV 266

Query: 284 VADAVVVAVP 293
             D+VVV  P
Sbjct: 267 ETDSVVVTAP 276

This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 462

>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 18 SNNAGKGQARSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRDRVGGRVHTDYSFGFP 76
          +   G   A S  V V+GAG++G+AAA AL       V++ E+RDRVGG + +    GF 
Sbjct: 2  AIAEGSAAASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGFI 61

Query: 77 VDLGA 81
           + G 
Sbjct: 62 WEEGP 66

Length = 496

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65
          V+VIG G+ G++ A  L      V LLE R  +  
Sbjct: 2  VVVIGGGIVGLSTAYELARRGLSVTLLE-RGDLAS 35

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 23  KGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67
            G      V+V+GAG  G+ AA A      KV L+E+ DR+GG++
Sbjct: 131 GGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL 175

Length = 415

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 17/35 (48%), Positives = 21/35 (60%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65
          V+VIGAG AG  AA        KV L+E  +R+GG
Sbjct: 7  VVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGG 41

Length = 454

>gnl|CDD|233382 TIGR01372, soxA, sarcosine oxidase, alpha subunit family, heterotetrameric form

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 16/40 (40%), Positives = 27/40 (67%)

Query: 31  VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTD 70
           V+V+GAG AG+AAA A   A  +V+L++ +   GG + ++
Sbjct: 166 VLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSE 205

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms [Energy metabolism, Amino acids and amines]. Length = 985

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 16/33 (48%), Positives = 19/33 (57%)

Query: 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62
           V ++GAG AG+A A AL  A   V LLE   R
Sbjct: 4  DVAIVGAGPAGLALALALARAGLDVTLLERAPR 36

Length = 387

>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 13/35 (37%), Positives = 23/35 (65%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65
          + ++G G+AG+AAA  L     +V + E+ D++GG
Sbjct: 2  IAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG 36

Length = 434

>gnl|CDD|226103 COG3573, COG3573, Predicted oxidoreductase [General function prediction only]

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 6/52 (11%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLL--ESRDRVGGRVHTDYSFG--FPVD 78
          VIV+GAG+AG+ AA  L DA  +V++L  E    +GG+    +SFG  F VD
Sbjct: 8  VIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAF--WSFGGLFLVD 57

Length = 552

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65
          V++IG G+ G++AA  L +    V +LE     GG
Sbjct: 7  VVIIGGGIVGLSAAYYLAERGADVTVLE-AGEAGG 40

Length = 387

>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional

 Score = 42.6 bits (101), Expect = 4e-04
 Identities = 17/38 (44%), Positives = 23/38 (60%)

Query: 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65
            SV++IGAG AG+ AA  L    + V +LE+   VGG
Sbjct: 4  KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG 41

Length = 479

>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed

 Score = 42.1 bits (100), Expect = 5e-04
 Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 14/75 (18%)

Query: 243 GYLPVINTLAKGLD---IRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKA 299
           G   +I  L + L    I  G  VTKI +   G ++ +  G    ADAV+VAVP      
Sbjct: 219 GLQSLIEALEEKLPAGTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPH----- 273

Query: 300 RTIKFEPRLPDWKEA 314
                 P LP    A
Sbjct: 274 ------PVLPSLFVA 282

Length = 451

>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function unknown]

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 34/151 (22%), Positives = 50/151 (33%), Gaps = 29/151 (19%)

Query: 331 FDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANF 390
            D + W +    GVV+D +     ++        C L               SDEA    
Sbjct: 327 IDNLLWSDDTLGGVVADLALTSPDYVEPGA---GCYL--EKVLAPGWPFLFESDEAIVAT 381

Query: 391 AFTQLKKILPDASSPIQYLVSHWGTDANSLG-------SYSYDTVGKSHDLYERLRI--P 441
              +L +++P               +A           S      G  H    R     P
Sbjct: 382 FEKELYELVPSL------------AEAKLKSSVLVNQQSLYGLAPGSYHY---RPEQKTP 426

Query: 442 VDNLFFAGEATSMSYPGSVHGAFSTGLMAAE 472
           + NL  AG+ T   Y GS+ GA  +GL+AA 
Sbjct: 427 IPNLLLAGDYTKQPYLGSMEGATLSGLLAAN 457

Length = 485

>gnl|CDD|131778 TIGR02731, phytoene_desat, phytoene desaturase

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 17/37 (45%), Positives = 27/37 (72%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67
          V + GAG+AG++ A+ L DA    ++LE+RD +GG+V
Sbjct: 2  VAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKV 38

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 453

>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional

 Score = 41.7 bits (99), Expect = 5e-04
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 11/81 (13%)

Query: 31  VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQE 90
           V ++GAG +G+ AA  L  A  KV + E +   GG        G     G    + +  +
Sbjct: 28  VAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGG--------GM--WGGGMLFNKIVVQ 77

Query: 91  NPLAPVISRLGLPLYRTSGDN 111
                ++   G+  Y+   D 
Sbjct: 78  EEADEILDEFGIR-YKEVEDG 97

Length = 257

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 42.3 bits (100), Expect = 6e-04
 Identities = 18/37 (48%), Positives = 21/37 (56%)

Query: 31  VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67
           V VIGAG AG+AAA  L  A   V + E  +  GG V
Sbjct: 542 VAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVV 578

Length = 1019

>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed

 Score = 41.3 bits (98), Expect = 0.001
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 253 KGLDIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAV 292
           +G+ I+ G +  K+ +   GV VT+E G   +T  AD V+VAV
Sbjct: 226 RGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAV 268

Length = 462

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67
          V++IG G AG+AAA  L     KV L+E         
Sbjct: 2  VVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNR 38

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|131779 TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carotene desaturase

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 17/37 (45%), Positives = 26/37 (70%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67
          V ++GAG+AG++ A  L DA  +V + ESR  +GG+V
Sbjct: 2  VAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKV 38

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. Length = 474

>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase

 Score = 40.6 bits (96), Expect = 0.001
 Identities = 18/35 (51%), Positives = 23/35 (65%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65
          V+V+G G AGVAAA A      KV+L+E R  +GG
Sbjct: 2  VVVVGGGPAGVAAAIAAARLGAKVLLVERRGWLGG 36

This family of proteins contains FAD dependent oxidoreductases and related proteins. Length = 415

>gnl|CDD|225459 COG2907, COG2907, Predicted NAD/FAD-binding protein [General function prediction only]

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY----SFGFPVDLG 80
            + VIG+G++G++AA  L      V L E+  R+GG  +T        G  VD G
Sbjct: 9  RKIAVIGSGISGLSAAWLLSRRH-DVTLFEADRRLGGHANTVAGNTDGGGVFVDTG 63

Length = 447

>gnl|CDD|232908 TIGR00292, TIGR00292, thiazole biosynthesis enzyme

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 14/106 (13%)

Query: 31  VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQE 90
           VI++GAG +G+ AA  L     KV +LE             +FG     G      +  E
Sbjct: 24  VIIVGAGPSGLTAAYYLAKNGLKVCVLERS----------LAFGGGSWGGGMLFSKIVVE 73

Query: 91  NPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANL 136
            P   ++   G+        +  +     E   + T+    +QA  
Sbjct: 74  KPAHEILDEFGIRY--EDEGDGYVVADSAE--FISTLASKALQAGA 115

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine. This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 254

>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65
          VI++GAG +G+ AA  L  A  KV + E +   GG
Sbjct: 33 VIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG 67

Length = 262

>gnl|CDD|235059 PRK02705, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61
              VIG G +G+AAAR L    ++VV+ +  D
Sbjct: 1  AIAHVIGLGRSGIAAARLLKAQGWEVVVSDRND 33

Length = 459

>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64
          V+V+GAG AG +AA  L D   +V+LLE +    
Sbjct: 3  VVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPR 36

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 295

>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional

 Score = 39.8 bits (94), Expect = 0.003
 Identities = 17/36 (47%), Positives = 22/36 (61%)

Query: 30  SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65
            V VIGAG AG+ AA  L    + V + E+RD+ GG
Sbjct: 142 KVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGG 177

Length = 457

>gnl|CDD|237225 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFG 74
          VIVIGAG AG++AA     A  KV+L+E  + VGG   T  S G
Sbjct: 19 VIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGT--TATSAG 60

Length = 578

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score = 39.4 bits (93), Expect = 0.004
 Identities = 18/36 (50%), Positives = 23/36 (63%)

Query: 30  SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65
            V V+G+G AG+AAA  L  A  KV + E  DR+GG
Sbjct: 145 KVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGG 180

Length = 471

>gnl|CDD|215268 PLN02487, PLN02487, zeta-carotene desaturase

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 30  SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67
            V +IGAG+AG++ A  L D   +V + ESR  +GG+V
Sbjct: 77  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKV 114

Length = 569

>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

 Score = 39.4 bits (93), Expect = 0.004
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 31  VIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64
             +IG G+AG A A AL    ++V L E+ +   
Sbjct: 263 AAIIGGGIAGAALALALARRGWQVTLYEADEAPA 296

Length = 662

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	507
PLN02268	435	probable polyamine oxidase	100.0
PLN03000	881	amine oxidase	100.0
PLN02529	738	lysine-specific histone demethylase 1	100.0
PLN02328	808	lysine-specific histone demethylase 1 homolog	100.0
PLN02676	487	polyamine oxidase	100.0
PLN02976	1713	amine oxidase	100.0
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	100.0
PLN02568	539	polyamine oxidase	100.0
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	100.0
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	100.0
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	100.0
PRK12416	463	protoporphyrinogen oxidase; Provisional	100.0
PRK11883	451	protoporphyrinogen oxidase; Reviewed	100.0
PLN02576	496	protoporphyrinogen oxidase	100.0
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	100.0
PRK07233	434	hypothetical protein; Provisional	100.0
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	100.0
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	100.0
PLN02612	567	phytoene desaturase	100.0
PRK07208	479	hypothetical protein; Provisional	100.0
PLN02487	569	zeta-carotene desaturase	100.0
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	100.0
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	100.0
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	100.0
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	100.0
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	100.0
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	100.0
COG2907	447	Predicted NAD/FAD-binding protein [General functio	99.97
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	99.96
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.95
COG3349	485	Uncharacterized conserved protein [Function unknow	99.89
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	99.89
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	99.8
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	99.74
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	99.7
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.69
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.52
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.5
COG2081	408	Predicted flavoproteins [General function predicti	99.48
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.48
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	99.48
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.48
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.47
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.46
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.46
PRK09126	392	hypothetical protein; Provisional	99.44
PRK10157	428	putative oxidoreductase FixC; Provisional	99.44
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.44
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.43
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.42
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.4
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.39
COG0579	429	Predicted dehydrogenase [General function predicti	99.38
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	99.38
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.38
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.37
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.36
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.36
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	99.35
PRK10015	429	oxidoreductase; Provisional	99.34
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	99.34
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	99.33
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.33
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.32
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	99.32
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.32
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.32
PRK08013	400	oxidoreductase; Provisional	99.31
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.3
PRK07588	391	hypothetical protein; Provisional	99.29
PRK06847	375	hypothetical protein; Provisional	99.29
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.26
PRK06184	502	hypothetical protein; Provisional	99.25
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.25
PRK11445	351	putative oxidoreductase; Provisional	99.25
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.24
PRK06834	488	hypothetical protein; Provisional	99.23
PRK08244	493	hypothetical protein; Provisional	99.22
PRK06185	407	hypothetical protein; Provisional	99.22
PRK07045	388	putative monooxygenase; Reviewed	99.21
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.2
PRK07190	487	hypothetical protein; Provisional	99.19
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	99.19
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.18
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.18
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.18
PRK05868	372	hypothetical protein; Validated	99.16
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	99.16
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	99.16
PRK06753	373	hypothetical protein; Provisional	99.15
PRK06996	398	hypothetical protein; Provisional	99.14
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	99.14
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.14
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.13
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	99.13
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.13
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	99.12
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.12
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	99.11
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.11
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.1
PLN02463	447	lycopene beta cyclase	99.1
PRK08132	547	FAD-dependent oxidoreductase; Provisional	99.09
PRK07236	386	hypothetical protein; Provisional	99.08
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.08
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.07
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.05
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	99.05
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	99.05
PRK06126	545	hypothetical protein; Provisional	99.03
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.03
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.03
PRK05257	494	malate:quinone oxidoreductase; Validated	99.02
PLN02661	357	Putative thiazole synthesis	99.02
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.02
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	99.02
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	99.02
PRK07538	413	hypothetical protein; Provisional	99.01
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.0
PRK08274	466	tricarballylate dehydrogenase; Validated	99.0
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.0
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.99
PRK08163	396	salicylate hydroxylase; Provisional	98.98
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.97
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	98.97
PLN02697	529	lycopene epsilon cyclase	98.96
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.95
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.94
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.93
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.93
PRK08294	634	phenol 2-monooxygenase; Provisional	98.93
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	98.92
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.91
PRK09897	534	hypothetical protein; Provisional	98.9
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.89
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	98.87
PRK07121	492	hypothetical protein; Validated	98.87
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.87
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.86
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.86
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.86
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.86
PRK06175	433	L-aspartate oxidase; Provisional	98.85
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.85
PRK07804	541	L-aspartate oxidase; Provisional	98.84
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.82
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.82
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.82
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.82
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.8
PRK08071	510	L-aspartate oxidase; Provisional	98.8
PRK12839	572	hypothetical protein; Provisional	98.79
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	98.78
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.77
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.76
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.75
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.75
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.75
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.75
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.75
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.74
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.74
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.74
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.74
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.73
PRK08401	466	L-aspartate oxidase; Provisional	98.72
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.71
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.71
PRK06475	400	salicylate hydroxylase; Provisional	98.71
PRK07395	553	L-aspartate oxidase; Provisional	98.69
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.69
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.68
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.68
PLN02815	594	L-aspartate oxidase	98.67
PTZ00367	567	squalene epoxidase; Provisional	98.66
PRK08275	554	putative oxidoreductase; Provisional	98.66
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.65
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.65
PRK07512	513	L-aspartate oxidase; Provisional	98.65
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.64
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.63
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.62
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.62
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.62
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.6
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.59
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.58
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.56
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.55
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.54
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	98.53
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.53
KOG2853	509	consensus Possible oxidoreductase [General functio	98.52
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.51
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.47
PRK09077	536	L-aspartate oxidase; Provisional	98.44
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.43
PRK12831	464	putative oxidoreductase; Provisional	98.42
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.42
PLN02852	491	ferredoxin-NADP+ reductase	98.39
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.38
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.36
PF07156	368	Prenylcys_lyase: Prenylcysteine lyase; InterPro: I	98.36
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.35
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.35
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.35
PRK06116	450	glutathione reductase; Validated	98.34
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.33
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.33
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.33
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.32
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	98.32
PRK06370	463	mercuric reductase; Validated	98.29
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.29
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.28
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.28
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.27
PTZ00188	506	adrenodoxin reductase; Provisional	98.27
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	98.26
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.26
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	98.26
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.25
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.25
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.22
PRK14694	468	putative mercuric reductase; Provisional	98.2
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.19
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	98.19
PRK10262	321	thioredoxin reductase; Provisional	98.19
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.18
PLN02985	514	squalene monooxygenase	98.17
PRK14727	479	putative mercuric reductase; Provisional	98.17
TIGR02053	463	MerA mercuric reductase. This model represents the	98.17
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.17
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.15
PTZ00052	499	thioredoxin reductase; Provisional	98.14
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.14
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.14
PRK06567	1028	putative bifunctional glutamate synthase subunit b	98.13
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.13
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.13
PRK13748	561	putative mercuric reductase; Provisional	98.12
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.12
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.12
PTZ00058	561	glutathione reductase; Provisional	98.12
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.12
PRK07846	451	mycothione reductase; Reviewed	98.12
KOG2960	328	consensus Protein involved in thiamine biosynthesi	98.09
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	98.09
PLN02507	499	glutathione reductase	98.07
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.05
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.03
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.03
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	98.02
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.99
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	97.99
PLN02546	558	glutathione reductase	97.99
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.98
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	97.97
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.97
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	97.95
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	97.95
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.95
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.95
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	97.95
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.94
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.93
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.93
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.93
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.93
COG4716	587	Myosin-crossreactive antigen [Function unknown]	97.91
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.9
COG3573	552	Predicted oxidoreductase [General function predict	97.89
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.85
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	97.84
PRK13984	604	putative oxidoreductase; Provisional	97.83
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.8
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.8
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.78
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.76
PRK07846	451	mycothione reductase; Reviewed	97.76
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.73
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.73
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	97.71
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	97.69
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.69
PRK02106	560	choline dehydrogenase; Validated	97.68
KOG2852	380	consensus Possible oxidoreductase [General functio	97.66
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.64
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.63
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	97.61
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.6
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.59
PRK06116	450	glutathione reductase; Validated	97.56
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.56
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.55
PLN02507	499	glutathione reductase	97.51
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.5
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.44
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.43
TIGR02053	463	MerA mercuric reductase. This model represents the	97.42
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.41
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.4
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.39
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.39
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.38
PRK06370	463	mercuric reductase; Validated	97.37
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.34
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.3
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	97.3
PLN02785	587	Protein HOTHEAD	97.3
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.29
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.29
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.28
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.28
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	97.25
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.25
PRK14727	479	putative mercuric reductase; Provisional	97.24
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	97.22
PTZ00052	499	thioredoxin reductase; Provisional	97.19
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.19
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.18
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.18
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.17
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.15
PRK14694	468	putative mercuric reductase; Provisional	97.14
PRK13748	561	putative mercuric reductase; Provisional	97.12
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	97.08
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	97.07
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.06
PTZ00058	561	glutathione reductase; Provisional	96.9
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	96.87
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	96.76
PLN02546	558	glutathione reductase	96.72
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	96.66
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	96.65
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.51
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	96.49
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	96.36
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	96.32
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.3
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	96.29
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.25
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.21
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	96.11
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.98
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	95.93
PRK14989	847	nitrite reductase subunit NirD; Provisional	95.84
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	95.81
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.81
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	95.62
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.56
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.39
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.38
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.26
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	95.25
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.23
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	95.23
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.21
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	95.21
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.19
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	95.12
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.09
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	95.09
PRK13512	438	coenzyme A disulfide reductase; Provisional	95.07
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.05
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	95.04
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	95.02
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.01
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.89
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	94.89
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	94.67
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	94.63
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.63
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	94.62
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	94.6
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	94.56
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	94.55
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	94.51
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.44
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	94.43
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	94.42
KOG2755	334	consensus Oxidoreductase [General function predict	94.42
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	94.37
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	94.36
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.31
PRK04148	134	hypothetical protein; Provisional	94.3
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	94.29
PTZ00153	659	lipoamide dehydrogenase; Provisional	94.23
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	94.21
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	94.16
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	94.1
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	94.09
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.08
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	94.04
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	93.99
PRK10262	321	thioredoxin reductase; Provisional	93.9
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	93.88
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	93.84
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	93.79
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	93.78
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	93.76
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	93.69
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.63
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	93.62
PLN02353	473	probable UDP-glucose 6-dehydrogenase	93.53
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	93.51
PRK06719	157	precorrin-2 dehydrogenase; Validated	93.38
PRK06223	307	malate dehydrogenase; Reviewed	93.3
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	93.28
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	93.26
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	93.25
PRK12831	464	putative oxidoreductase; Provisional	93.24
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.24
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	93.2
PRK12770	352	putative glutamate synthase subunit beta; Provisio	93.2
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	93.18
PRK07417	279	arogenate dehydrogenase; Reviewed	93.09
PTZ00082	321	L-lactate dehydrogenase; Provisional	93.05
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.02
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.02
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	92.93
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	92.85
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	92.73
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.6
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	92.58
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	92.52
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.51
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	92.47
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	92.29
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	92.06
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	92.04
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.87
PRK08306	296	dipicolinate synthase subunit A; Reviewed	91.8
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	91.79
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	91.77
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	91.76
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	91.76
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	91.73
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	91.64
PRK11730	715	fadB multifunctional fatty acid oxidation complex	91.63
PRK15116	268	sulfur acceptor protein CsdL; Provisional	91.62
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	91.56
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	91.52
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	91.48
PTZ00117	319	malate dehydrogenase; Provisional	91.48
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	91.46
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	91.44
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	91.44
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.36
PLN02256	304	arogenate dehydrogenase	91.35
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	91.32
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	91.3
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	91.3
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.17
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.08
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	91.06
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	91.0
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	90.84
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	90.8
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	90.8
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	90.75
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	90.73
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	90.67
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	90.56
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	90.43
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	90.39
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	90.37
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	90.28
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	90.26
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	90.25
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	90.2
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	90.11
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	90.11
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.05
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	89.97
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	89.9
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	89.88
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	89.82
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	89.8
PRK03815	401	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.64
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	89.58
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	89.56
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	89.54
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.41
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	89.37
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	89.36
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	89.34
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	89.19
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	89.18
PLN02712	667	arogenate dehydrogenase	89.09
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	89.06
PRK12779	944	putative bifunctional glutamate synthase subunit b	89.01
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	88.9
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	88.87
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.75
PRK09496	453	trkA potassium transporter peripheral membrane com	88.73
PRK08328	231	hypothetical protein; Provisional	88.66
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	88.64
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	88.6
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	88.55

>PLN02268 probable polyamine oxidase

Probab=100.00  E-value=3e-57  Score=457.08  Aligned_cols=434  Identities=84%  Similarity=1.365  Sum_probs=361.5

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCeeeec
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTS  108 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~  108 (507)
                      .+|+|||||+|||+||+.|.++|++|+|||+++|+|||++|....|+.+|+|++|+++...++.+.++++++|++..+..
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~~~~~   80 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCNENPLAPLIGRLGLPLYRTS   80 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcCCcccCCCCeeEeccCCCchHHHHHHHhCCceEecc
Confidence            47999999999999999999999999999999999999999888899999999999864334568999999999877655


Q ss_pred             CCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHh
Q 010542          109 GDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVF  188 (507)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (507)
                      ....+.+..+...                +..+......++......+...+.++............++.|+.++++.++
T Consensus        81 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  144 (435)
T PLN02268         81 GDNSVLYDHDLES----------------YALFDMDGNQVPQELVTKVGETFERILEETEKVRDEHEEDMSLLQAISIVL  144 (435)
T ss_pred             CCccccccccccc----------------cceecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCCcCHHHHHHHHh
Confidence            4444333322111                233444555667666666666666666665554444567889999988777


Q ss_pred             ccChhHHhhhhHHHHHHHHHHhhhccccCCcccccccccCccccccCCccccccchHHHHHHHhccCCcccCceeEEEEe
Q 010542          189 DRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITR  268 (507)
Q Consensus       189 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~g~~i~~~~~V~~I~~  268 (507)
                      .+.+.+...++.+++++.++.++.++++.+++++|+..+.....+.|+...+.+|++.++++|.++++|++|++|++|..
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~g~~~~~~~G~~~l~~~l~~~~~i~~~~~V~~i~~  224 (435)
T PLN02268        145 ERHPELRLEGLAHEVLQWYLCRMEGWFAADADTISLKSWDQEELLEGGHGLMVRGYDPVINTLAKGLDIRLNHRVTKIVR  224 (435)
T ss_pred             hhCcccccchHHHHHHHHHHHHHHHHhCCChHhCchhhcCCccccCCCceeecCCHHHHHHHHhccCceeCCCeeEEEEE
Confidence            65544455668888888888887788999999999887665445566677888999999999999999999999999999


Q ss_pred             eCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcceeEEEEEccCCCCCCCccceeecCC
Q 010542          269 HYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDT  348 (507)
Q Consensus       269 ~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~  348 (507)
                      .++++.|++.+|+++.||+||+|+|+..+....+.+.|++|+...+++.+++++...|+.+.|+++||++.++.|.+.+.
T Consensus       225 ~~~~v~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~~~~~g~~~~~  304 (435)
T PLN02268        225 RYNGVKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPNVEFLGVVAPT  304 (435)
T ss_pred             cCCcEEEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCCCceeeccCCC
Confidence            99999999999988999999999999998765678889999999999999999999999999999999987777776654


Q ss_pred             CCceeeeeccccCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhCCCCCCCcEEEeccCCCCCCCCcccccCCC
Q 010542          349 SYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTV  428 (507)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~  428 (507)
                      ...+.++.+.....+..++++++.+..+..+.+++++++++.++++|.++||...+|..+.+++|..+|++.|+|.+..|
T Consensus       305 ~~~~~~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~~~~p~~~~~~~W~~dp~~~G~~~~~~~  384 (435)
T PLN02268        305 SYGCSYFLNLHKATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPDATEPVQYLVSRWGSDPNSLGCYSYDLV  384 (435)
T ss_pred             CCCceEEEecccCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcCCCCCccEEEecccCCCCCCCccCCCCCC
Confidence            44555555554456677888898888888899999999999999999999998778999999999999999999998889


Q ss_pred             CCchHHHHHhcCCCCceEEeeccccCcCCchhhHHHHHHHHHHHHHHHHH
Q 010542          429 GKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV  478 (507)
Q Consensus       429 ~~~~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~l  478 (507)
                      |+.....+.+.+|+++|||||++++..++|+||||++||.+||++|++.|
T Consensus       385 g~~~~~~~~l~~p~~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~l  434 (435)
T PLN02268        385 GKPHDLYERLRAPVDNLFFAGEATSSDFPGSVHGAYSTGVMAAEECRMRL  434 (435)
T ss_pred             CCCHHHHHHHhCCCCCeEEeeccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence            98777888899999999999999999888999999999999999998764

>PLN03000 amine oxidase

Probab=100.00  E-value=2.7e-47  Score=392.86  Aligned_cols=428  Identities=34%  Similarity=0.518  Sum_probs=321.0

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCC----CeeeecCCceeeCCCCCCchHHHHHhcC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSF----GFPVDLGASWLHGVCQENPLAPVISRLG  101 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~----g~~~d~G~~~~~~~~~~~~~~~l~~~lg  101 (507)
                      ....+|+|||||++||+||+.|++.|++|+|+|+++++|||+.|....    ++.+|+|++|+++. ..+.+..+++++|
T Consensus       182 ~~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~-~~npl~~L~~qlg  260 (881)
T PLN03000        182 SSKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGT-LGNPLGIIARQLG  260 (881)
T ss_pred             CCCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCC-CccHHHHHHHHcC
Confidence            357899999999999999999999999999999999999999998754    57899999999875 4456778899999


Q ss_pred             CCeeeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHH---hhcCCCCC
Q 010542          102 LPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKV---REEHDEDM  178 (507)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  178 (507)
                      ++.........                           ++..++...+..........+..++....++   ......+.
T Consensus       261 l~l~~~~~~~~---------------------------ly~~~Gk~v~~~~~~~ve~~fn~lLd~~~~lr~l~~~~~~D~  313 (881)
T PLN03000        261 SSLYKVRDKCP---------------------------LYRVDGKPVDPDVDLKVEVAFNQLLDKASKLRQLMGDVSMDV  313 (881)
T ss_pred             CceeecCCCCe---------------------------EEEeCCcCCchhhhhhHHHHHHHHHHHHHHHHHHhcccCcCC
Confidence            98654432222                           2222333444433323222333333332222   22334567


Q ss_pred             cHHHHHHHHhccChhHHhhhhHHHHHHHHHHhhhccccCCcccccccccCcc--ccccCCccccccchHHHHHHHhccCC
Q 010542          179 SIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKE--ELLPGGHGLMVRGYLPVINTLAKGLD  256 (507)
Q Consensus       179 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~~~~~G~~~l~~~l~~g~~  256 (507)
                      ++.+++..+..... .........++.+.+..+....+.....+++..+...  ....+.+..+.+|++.|+++|++.+.
T Consensus       314 SLg~aLe~~~~~~g-~~~t~e~~~Ll~w~lanLE~~~as~ls~LSl~~wdqd~~~e~~G~~~~v~GG~~~LieaLa~~L~  392 (881)
T PLN03000        314 SLGAALETFRQVSG-NDVATEEMGLFNWHLANLEYANAGLVSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALAENVP  392 (881)
T ss_pred             cHHHHHHHHHHHHc-ccCCHHHHHHHHHHHHHHhcccccCHHHHHHHHhhhcccccCCCceEEeCCCHHHHHHHHHhhCC
Confidence            77765543221100 0000011123333333333444455555565444321  12344566788999999999999999


Q ss_pred             cccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcceeEEEEEccCCCC
Q 010542          257 IRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW  336 (507)
Q Consensus       257 i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~  336 (507)
                      |++|++|++|...+++|.|++.+ .++.||+||+|+|+..+....+.|.|+||+...+++.+++++...|+++.|+++||
T Consensus       393 I~Ln~~Vt~I~~~~dgV~V~~~~-~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW  471 (881)
T PLN03000        393 ILYEKTVQTIRYGSNGVKVIAGN-QVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFW  471 (881)
T ss_pred             cccCCcEEEEEECCCeEEEEECC-cEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCccc
Confidence            99999999999999999998754 48999999999999998866789999999999999999999999999999999999


Q ss_pred             CCC-ccceeecCCCC---ceeeeeccccCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhCCC----CCCCcEE
Q 010542          337 PNV-EFLGVVSDTSY---GCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD----ASSPIQY  408 (507)
Q Consensus       337 ~~~-~~~g~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p~----~~~~~~~  408 (507)
                      +.. +++|.+.....   ....+.+..+..+..+|++++.+..+..+..++++++++.++++|.++|+.    +.+|..+
T Consensus       472 ~~d~~~FG~l~~~~~~rg~~~~f~s~sp~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~  551 (881)
T PLN03000        472 STDLDTFGHLTEDPNYRGEFFLFYSYAPVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQT  551 (881)
T ss_pred             cCCCCceeEEecCCCCCceeEEEeCCCCCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHHHHHhCccccccCCceEE
Confidence            854 56677643221   122334444445677899999999999999999999999999999999962    3578899


Q ss_pred             EeccCCCCCCCCcccccCCCCCchHHHHHhcCCC--CceEEeeccccCcCCchhhHHHHHHHHHHHHHHHHHHHHhC
Q 010542          409 LVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV--DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYG  483 (507)
Q Consensus       409 ~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~l~~~~~  483 (507)
                      .+++|..+||+.|+|++..+|.....++.+.+|+  ++|||||++++..|+|||+||++||.+||++|++.+.....
T Consensus       552 ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l~~~~~  628 (881)
T PLN03000        552 VCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAKARGI  628 (881)
T ss_pred             EEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHHhhhccC
Confidence            9999999999999999989998888888899986  58999999999888899999999999999999998866653

>PLN02529 lysine-specific histone demethylase 1

Probab=100.00  E-value=4e-47  Score=391.35  Aligned_cols=426  Identities=36%  Similarity=0.554  Sum_probs=319.2

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCC--C--eeeecCCceeeCCCCCCchHHHHHhcC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSF--G--FPVDLGASWLHGVCQENPLAPVISRLG  101 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~--g--~~~d~G~~~~~~~~~~~~~~~l~~~lg  101 (507)
                      ...+||+|||||++||+||..|+++|++|+|+|+++++||+++|....  |  +.+|+|+.|+++. ..+++..+.+++|
T Consensus       158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~-~~npl~~la~~lg  236 (738)
T PLN02529        158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGI-HANPLGVLARQLS  236 (738)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeecccc-ccchHHHHHHHhC
Confidence            457899999999999999999999999999999999999999998764  3  4899999999875 3445888999999


Q ss_pred             CCeeeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHh---hcCCCCC
Q 010542          102 LPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVR---EEHDEDM  178 (507)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  178 (507)
                      ++..+.....                           .++..++...+......+...+..++..+..+.   ....+++
T Consensus       237 l~~~~~~~~~---------------------------~~~~~~G~~v~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~d~  289 (738)
T PLN02529        237 IPLHKVRDNC---------------------------PLYKPDGALVDKEIDSNIEFIFNKLLDKVTELRQIMGGFANDI  289 (738)
T ss_pred             CCccccCCCc---------------------------eEEeCCCcCcchhhhhhHHHHHHHHHHHHHHHHHhcccCccCC
Confidence            9865432221                           222333333333322222222333333322211   1245688


Q ss_pred             cHHHHHHHHhccChhHHhhhhHHHHHHHHHHhhhccccCCcccccccccCcc--ccccCCccccccchHHHHHHHhccCC
Q 010542          179 SIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKE--ELLPGGHGLMVRGYLPVINTLAKGLD  256 (507)
Q Consensus       179 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~~~~~G~~~l~~~l~~g~~  256 (507)
                      |+.+++......... .......+++++++..+....+.+.+.+++..+...  ....+.+..+.+||+.++++|++++.
T Consensus       290 Sl~~~le~~~~~~~~-~~t~~e~~ll~~~~~~le~a~~~~~s~LSl~~~~~~~~~e~~G~~~~i~GG~~~Li~aLA~~L~  368 (738)
T PLN02529        290 SLGSVLERLRQLYGV-ARSTEERQLLDWHLANLEYANAGCLSDLSAAYWDQDDPYEMGGDHCFLAGGNWRLINALCEGVP  368 (738)
T ss_pred             CHHHHHHHHHhhhcc-CCCHHHHHHHHHHHHHhceecCCChHHhhhhHhhhccccccCCceEEECCcHHHHHHHHHhcCC
Confidence            999988754321100 011122345555554455556667777777666532  22344567789999999999999999


Q ss_pred             cccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcceeEEEEEccCCCC
Q 010542          257 IRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW  336 (507)
Q Consensus       257 i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~  336 (507)
                      |++|++|++|...+++|+|++ ++.++.||+||+|+|+..+....+.|.|+||+...+++.+++++...|+++.|+++||
T Consensus       369 IrLnt~V~~I~~~~dGVtV~t-~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW  447 (738)
T PLN02529        369 IFYGKTVDTIKYGNDGVEVIA-GSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFW  447 (738)
T ss_pred             EEcCCceeEEEEcCCeEEEEE-CCEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCccc
Confidence            999999999999999999876 4458999999999999999876688999999999999999999999999999999999


Q ss_pred             CCC-ccceeecCCC---CceeeeeccccCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhCCC----CCCCcEE
Q 010542          337 PNV-EFLGVVSDTS---YGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD----ASSPIQY  408 (507)
Q Consensus       337 ~~~-~~~g~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p~----~~~~~~~  408 (507)
                      +.. +++|.+....   .....+.+.....+..++++++.+..+..+..++++++++.++++|+++|+.    +.+|..+
T Consensus       448 ~~~~~~fG~l~~~~~~~g~~~~~~~~~~~~ggpvLvafv~G~~A~~le~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~  527 (738)
T PLN02529        448 GEELDTFGCLNESSNKRGEFFLFYGYHTVSGGPALVALVAGEAAQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQT  527 (738)
T ss_pred             cCCCCceEEEeccCCCCceEEEEecCCCCCCCCEEEEEECchhhHHHhcCCHHHHHHHHHHHHHHHhCccccccCCceEE
Confidence            753 4566653221   1112222333334556888999998888899999999999999999999962    3467889


Q ss_pred             EeccCCCCCCCCcccccCCCCCchHHHHHhcCCC-CceEEeeccccCcCCchhhHHHHHHHHHHHHHHHHHHHH
Q 010542          409 LVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV-DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER  481 (507)
Q Consensus       409 ~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~l~~~  481 (507)
                      ..++|..++++.|+|++..++......+.+..|+ ++|||||++++..|+|+||||+.||.+||++|++.+...
T Consensus       528 v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~l~~~  601 (738)
T PLN02529        528 ICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQYPATMHGAFLSGLREASRILHVARSQ  601 (738)
T ss_pred             EEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999887776655556677774 899999999999899999999999999999999877543

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=100.00  E-value=3.3e-46  Score=385.79  Aligned_cols=429  Identities=34%  Similarity=0.524  Sum_probs=319.3

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCC----eeeecCCceeeCCCCCCchHHHHHhcC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFG----FPVDLGASWLHGVCQENPLAPVISRLG  101 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g----~~~d~G~~~~~~~~~~~~~~~l~~~lg  101 (507)
                      .+..+|+|||||++||+||+.|++.|++|+|+|+++++|||+.+....|    +.+|+|++++++. ..+.+..+++++|
T Consensus       236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~-~~npl~~l~~~lg  314 (808)
T PLN02328        236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGI-NGNPLGVLARQLG  314 (808)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCC-CccHHHHHHHHcC
Confidence            4578999999999999999999999999999999999999999987764    3689999999875 3456788999999


Q ss_pred             CCeeeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhh-----cCCC
Q 010542          102 LPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVRE-----EHDE  176 (507)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~  176 (507)
                      ++.........                           ++..++..+...........+..++....++..     ....
T Consensus       315 l~~~~~~~~~~---------------------------~~~~dG~~~~~~~~~~v~~~f~~lL~~~~klr~~~~~~~~~~  367 (808)
T PLN02328        315 LPLHKVRDICP---------------------------LYLPDGKAVDAEIDSKIEASFNKLLDRVCKLRQAMIEEVKSV  367 (808)
T ss_pred             CceEecCCCce---------------------------EEeCCCcCcchhhhhhHHHHHHHHHHHHHHHHHhhhhccccc
Confidence            98654332221                           222233333322222222333444443332221     1234


Q ss_pred             CCcHHHHHHHHhccChhHHhhhhHHHHHHHHHHhhhccccCCcccccccccCcc--ccccCCccccccchHHHHHHHhcc
Q 010542          177 DMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKE--ELLPGGHGLMVRGYLPVINTLAKG  254 (507)
Q Consensus       177 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~~~~~G~~~l~~~l~~g  254 (507)
                      +.|+.++++.+..... .........++++.+..+....+.....+++..+...  ....+.+..+.+||+.|+++|++.
T Consensus       368 D~SLg~~le~~~~~~~-~~~~~~e~~Ll~w~lanlE~~~gs~ls~LSl~~w~qd~~~e~~G~~~~v~GG~~~Li~aLa~~  446 (808)
T PLN02328        368 DVNLGTALEAFRHVYK-VAEDPQERMLLNWHLANLEYANASLMSNLSMAYWDQDDPYEMGGDHCFIPGGNDTFVRELAKD  446 (808)
T ss_pred             CcCHHHHHHHHhhhhc-cCCCHHHHHHHHHHHHHHhccchhhHHHHHhhhhhccccccCCCeEEEECCcHHHHHHHHHhh
Confidence            6788888764321100 0001112233444443334444555556665444321  122345667899999999999999


Q ss_pred             CCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcceeEEEEEccCC
Q 010542          255 LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKV  334 (507)
Q Consensus       255 ~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~  334 (507)
                      +.|++|++|++|...+++|.| +.+|+++.||+||+|+|+..+....+.|.|+||+...+++.+++|+...|+++.|+.+
T Consensus       447 L~I~ln~~V~~I~~~~dgV~V-~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~  525 (808)
T PLN02328        447 LPIFYERTVESIRYGVDGVIV-YAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYN  525 (808)
T ss_pred             CCcccCCeeEEEEEcCCeEEE-EeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCc
Confidence            999999999999999888877 4577799999999999999987666789999999999999999999999999999999


Q ss_pred             CCCCC-ccceeecCCCC---ceeeeeccccCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhCCC----CCCCc
Q 010542          335 FWPNV-EFLGVVSDTSY---GCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD----ASSPI  406 (507)
Q Consensus       335 ~~~~~-~~~g~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p~----~~~~~  406 (507)
                      ||+.. +.+|.+..+..   ....+.+.....+..+|++++.+..+..+..++++++++.++++|.++|+.    ..+|.
T Consensus       526 FW~~~~d~fG~l~~d~s~rG~~~lf~s~s~~~G~~vLvafv~G~~A~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~  605 (808)
T PLN02328        526 FWGGEIDTFGHLTEDPSMRGEFFLFYSYSSVSGGPLLIALVAGDAAVKFETLSPVESVKRVLQILRGIFHPKGIVVPDPV  605 (808)
T ss_pred             cccCCCCceEEEeecCCCCceEEEEecCCCCCCCcEEEEEecChhhHHHhcCCHHHHHHHHHHHHHHHhCcccccccCcc
Confidence            99853 45566543211   112333443345668899999999999999999999999999999999862    35788


Q ss_pred             EEEeccCCCCCCCCcccccCCCCCchHHHHHhcCCC--CceEEeeccccCcCCchhhHHHHHHHHHHHHHHHHHHHHhCC
Q 010542          407 QYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV--DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGE  484 (507)
Q Consensus       407 ~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~l~~~~~~  484 (507)
                      .+.+++|..+++++|+|++..+|......+.+.+|+  ++|||||++++..++|||+||+.||.+||++|++.+..+...
T Consensus       606 ~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~~~~~~~~  685 (808)
T PLN02328        606 QAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNKQYPATMHGAFLSGMREAANILRVARRRSLC  685 (808)
T ss_pred             eEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHHHhhcccC
Confidence            999999999999999999888998767778888885  589999999998888999999999999999999988777543

>PLN02676 polyamine oxidase

Probab=100.00  E-value=3.9e-45  Score=368.63  Aligned_cols=423  Identities=29%  Similarity=0.467  Sum_probs=302.8

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCCCCCceeEeccCCCeeeecCCceeeCC--CCCCchHHHHHhcC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGV--CQENPLAPVISRLG  101 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~--~~~~~~~~l~~~lg  101 (507)
                      ....+||+|||||++||+||++|+++|. +|+|+|+++++||++.+....|+.+|.|++|+++.  ...+.+.++++++|
T Consensus        23 ~~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~~g  102 (487)
T PLN02676         23 AKPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELGANWVEGVGGPESNPIWELANKLK  102 (487)
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeEEecCCEEEEcccCcccChHHHHHHhcC
Confidence            3457899999999999999999999998 69999999999999999888899999999999752  34567889999999


Q ss_pred             CCeeeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHh----hcCCCC
Q 010542          102 LPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVR----EEHDED  177 (507)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  177 (507)
                      +..........     .                   ...+..++...+..........+..+......+.    ....++
T Consensus       103 ~~~~~~~~~~~-----~-------------------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (487)
T PLN02676        103 LRTFYSDFDNL-----S-------------------SNIYKQDGGLYPKKVVQKSMKVADASDEFGENLSISLSAKKAVD  158 (487)
T ss_pred             CceeecCcccc-----c-------------------eeEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Confidence            98654321110     0                   1112222233333322232333333333222221    122345


Q ss_pred             CcHHH--HHHHHhccChhHHhhhhHHHHHHHHHHhhhccccCCcccccccccCcccc---ccCCcccc--ccchHHHHHH
Q 010542          178 MSIQR--AISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEEL---LPGGHGLM--VRGYLPVINT  250 (507)
Q Consensus       178 ~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~---~~~~~~~~--~~G~~~l~~~  250 (507)
                      .++.+  .+.....        ....+....++.. ...++.++...|+..+.....   ..+...++  ++|++++++.
T Consensus       159 ~s~~~~~~~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~~S~~~~~~~~~~~~~g~~~~~~~~~~G~~~l~~~  229 (487)
T PLN02676        159 ISILTAQRLFGQVP--------KTPLEMVIDYYNY-DYEFAEPPRVTSLKNTEPNPTFVDFGEDEYFVADPRGYESLVYY  229 (487)
T ss_pred             ccHHHHHHHHhhCC--------CCHHHHHHHHHhc-cceeccCccccchhhcCcccccccCCCceEEeecCCCHHHHHHH
Confidence            55532  2221110        0111111111111 122566777777765432111   11223333  5799999999


Q ss_pred             Hhcc-----------CCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHc
Q 010542          251 LAKG-----------LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDL  319 (507)
Q Consensus       251 l~~g-----------~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~  319 (507)
                      |.+.           .+|++|++|++|...+++|.|++.+|+++.||+||+|+|+..+....+.|.|+||+..++++..+
T Consensus       230 La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l  309 (487)
T PLN02676        230 LAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQF  309 (487)
T ss_pred             HHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhC
Confidence            9873           35999999999999999999999999899999999999999987656899999999999999999


Q ss_pred             CCcceeEEEEEccCCCCCCCc-cceeecCCCC--ceeeeeccc-cCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHH
Q 010542          320 GVGIENKIIMHFDKVFWPNVE-FLGVVSDTSY--GCSYFLNLH-KATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQL  395 (507)
Q Consensus       320 ~~~~~~~~~l~~~~~~~~~~~-~~g~~~~~~~--~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L  395 (507)
                      +++...|+++.|+++||++.. ..........  ....+.... ..++..+++++..+..+..+..+++++.++.++++|
T Consensus       310 ~~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~L  389 (487)
T PLN02676        310 DMAVYTKIFLKFPYKFWPSGPGTEFFLYAHERRGYYPFWQHLENEYPGSNVLFVTVTDEESRRIEQQPDSETKAEIMEVL  389 (487)
T ss_pred             CceeeEEEEEEeCCCCCCCCCCceeeeeeccccccchhhhhcccCCCCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHH
Confidence            999999999999999998631 1111111100  000111111 123445777777787788888999999999999999


Q ss_pred             HHhCC-CCCCCcEEEeccCCCCCCCCcccccCCCCCchHHHHHhcCCCCceEEeeccccCcCCchhhHHHHHHHHHHHHH
Q 010542          396 KKILP-DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDC  474 (507)
Q Consensus       396 ~~~~p-~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i  474 (507)
                      +++|| ....|..+..+.|..+|++.|+|++..||......+.+++|+++|||||++++..++||||||+.||.+||++|
T Consensus       390 ~~~~g~~~~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I  469 (487)
T PLN02676        390 RKMFGPNIPEATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYNGYVHGAYLAGIDTANDL  469 (487)
T ss_pred             HHHhCCCCCCcceEEecccCCCCCCCcccCCCCCCCChhHHHHHhCCCCceEEeccccccccccchHHHHHHHHHHHHHH
Confidence            99996 45678899999999999999999988899887778889999999999999999888899999999999999999


Q ss_pred             HHHHHH
Q 010542          475 RMRVLE  480 (507)
Q Consensus       475 ~~~l~~  480 (507)
                      ++.+..
T Consensus       470 ~~~l~~  475 (487)
T PLN02676        470 LECIKK  475 (487)
T ss_pred             HHHhcc
Confidence            987643

>PLN02976 amine oxidase

Probab=100.00  E-value=5e-45  Score=384.23  Aligned_cols=428  Identities=37%  Similarity=0.643  Sum_probs=322.7

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccC-CCeeeecCCceeeCCCCC-------CchHHHHH
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS-FGFPVDLGASWLHGVCQE-------NPLAPVIS   98 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~~~-------~~~~~l~~   98 (507)
                      ..++|+|||||++||++|++|.+.|++|+|||+++++||++.+... .|+++|.|+.++++...+       +....+++
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~la~  771 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICA  771 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHHHH
Confidence            4689999999999999999999999999999999999999999764 588999999999875321       23345788


Q ss_pred             hcCCCeeeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhh---cCC
Q 010542           99 RLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVRE---EHD  175 (507)
Q Consensus        99 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  175 (507)
                      ++|+..........                          .+....+..++.+....+...+..++........   ...
T Consensus       772 qlGl~l~~~~~~~~--------------------------~yd~~~G~~V~~e~~~~v~~~fn~lld~~~~~~~~~g~~a  825 (1713)
T PLN02976        772 QLGLELTVLNSDCP--------------------------LYDVVTGEKVPADLDEALEAEYNSLLDDMVLLVAQKGEHA  825 (1713)
T ss_pred             hcCCccccccCCCc--------------------------eeEccCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Confidence            89987544322111                          0122345566666666666666666655543211   233


Q ss_pred             CCCcHHHHHHHHhccCh------h-------------H----------------H---hhhhHHHHHHHHHHhhhccccC
Q 010542          176 EDMSIQRAISIVFDRRP------E-------------L----------------R---LEGLAHKVLQWYLCRMEGWFAA  217 (507)
Q Consensus       176 ~~~~~~~~~~~~~~~~~------~-------------l----------------~---~~~~~~~~~~~~~~~~~~~~~~  217 (507)
                      .++++.+++...+....      .             .                .   .......++++++......++.
T Consensus       826 ~d~SLgd~Le~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~~lE~~~aa  905 (1713)
T PLN02976        826 MKMSLEDGLEYALKRRRMPRPGVDIDETELGNAADDLYDSASTGVDGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAA  905 (1713)
T ss_pred             cCCCHHHHHHHHHhhhhccccccccchhhcccchhhhhhhhhhcccccchhhhhHHHhhCHHHHHHHHHHHHhhcccccC
Confidence            46788887774332110      0             0                0   0001111222222222223456


Q ss_pred             CcccccccccCccc---cccCCccccccchHHHHHHHhccCCcccCceeEEEEee----------CCcEEEEEcCCcEEE
Q 010542          218 DAETISLKSWDKEE---LLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRH----------YIGVKVTVEGGKTFV  284 (507)
Q Consensus       218 ~~~~~s~~~~~~~~---~~~~~~~~~~~G~~~l~~~l~~g~~i~~~~~V~~I~~~----------~~~v~v~~~~g~~~~  284 (507)
                      ++.++|+..+....   .+.|....+.+||+.|+++|++++.|++|++|++|.+.          +++|.|++.+|+++.
T Consensus       906 ~L~eVSl~~~~qd~~y~~fgG~~~rIkGGYqqLIeALAe~L~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetft  985 (1713)
T PLN02976        906 LLKEVSLPYWNQDDVYGGFGGAHCMIKGGYSNVVESLAEGLDIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFL  985 (1713)
T ss_pred             CHHHhhhhhhhcccccccCCCceEEeCCCHHHHHHHHHhhCCeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEE
Confidence            77788876655221   23455667899999999999999999999999999984          467899999998999


Q ss_pred             cCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcceeEEEEEccCCCCCCC-ccceeecCC---CCceeeeecccc
Q 010542          285 ADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV-EFLGVVSDT---SYGCSYFLNLHK  360 (507)
Q Consensus       285 ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~g~~~~~---~~~~~~~~~~~~  360 (507)
                      ||+||+|+|+..+....+.|.|+||+..++++..++++...|+++.|+.+||++. .++|.....   ...+..+++...
T Consensus       986 ADaVIVTVPLGVLKag~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG~~~~~wnlr~ 1065 (1713)
T PLN02976        986 GDAVLITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQCFMFWNVKK 1065 (1713)
T ss_pred             eceEEEeCCHHHhhhcccccCCcccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCCCCceEEEeccCCC
Confidence            9999999999998755578999999999999999999999999999999999863 555644321   111223334444


Q ss_pred             CCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhCCC--CCCCcEEEeccCCCCCCCCcccccCCCCCchHHHHHh
Q 010542          361 ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD--ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERL  438 (507)
Q Consensus       361 ~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p~--~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~  438 (507)
                      +.+..+|++++.+..+..+..++++++++.+++.|.++||.  .+.|..+.+++|..+||+.|+|++..||.....+..+
T Consensus      1066 psG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~L 1145 (1713)
T PLN02976       1066 TVGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDIL 1145 (1713)
T ss_pred             CCCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHH
Confidence            55677888888888888888999999999999999999985  3578899999999999999999988899877778889


Q ss_pred             cCCCCc-eEEeeccccCcCCchhhHHHHHHHHHHHHHHHHHHH
Q 010542          439 RIPVDN-LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE  480 (507)
Q Consensus       439 ~~~~~~-l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~l~~  480 (507)
                      ..|++| |||||++++..|+|||+||+.||.+||++|+..+..
T Consensus      1146 AePVggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~~ 1188 (1713)
T PLN02976       1146 GRPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILNT 1188 (1713)
T ss_pred             hCCCCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHHc
Confidence            999876 999999999989999999999999999999987654

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=8.9e-46  Score=367.99  Aligned_cols=432  Identities=46%  Similarity=0.700  Sum_probs=328.1

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCee-eecCCceeeCCCCCCchHHHHHhcCCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLP  103 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~-~d~G~~~~~~~~~~~~~~~l~~~lg~~  103 (507)
                      ..++++|||||||+|||+||..|.+.|++|+|||+++|+|||++|.+..+.. +|+|++++++.. .+++.-+.+++|++
T Consensus        12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~-~npl~~l~~qlgl~   90 (501)
T KOG0029|consen   12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVY-NNPLALLSKQLGLE   90 (501)
T ss_pred             ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcC-ccHHHHHHHHhCcc
Confidence            4678899999999999999999999999999999999999999999887665 999999999864 44788999999999


Q ss_pred             eeeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhc--CCCCCcHH
Q 010542          104 LYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREE--HDEDMSIQ  181 (507)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  181 (507)
                      ..........+...+...                ...+..........+       +.............  .....++.
T Consensus        91 ~~~~~~~~~l~~~~~~~~----------------~~~~d~~~~~~~~~l-------~~~~~~~~~~~~~~~~~i~~~~~~  147 (501)
T KOG0029|consen   91 LYKVRDTCPLFNENGGES----------------DKVFDDFVEQEFNRL-------LDDASNLEQRLDNEIIGISDDSFG  147 (501)
T ss_pred             cceecccccccccCCccc----------------ccccccchhhhhHHH-------HHHHhhhhhhhhhcccccccccHH
Confidence            877666665554444222                111111111111111       11111111111000  01122333


Q ss_pred             HHHHHHhc------cChhHHhhhhHHHHHHHHHHhhhccccCCcccccccccCccccccC--CccccccchHHHHHHHhc
Q 010542          182 RAISIVFD------RRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPG--GHGLMVRGYLPVINTLAK  253 (507)
Q Consensus       182 ~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~~G~~~l~~~l~~  253 (507)
                      +.+..+..      ...+....+.....+.+++..+.........+.+...+.....+.+  .+..+.+|+..++..+++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~~~v~~~la~  227 (501)
T KOG0029|consen  148 EALEAFLSASRLMKTLLELLLEGEADKVLQWHLVNLELTFIAHLENASARLWDQDELFGGGGIHLLMKGGYEPVVNSLAE  227 (501)
T ss_pred             HHHHhHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHhhccHhHhhHHhhhhhhhcccccchhHhhCCccHHHhhcCC
Confidence            33222211      1111222234444555666656666666666666665554433333  357889999999999999


Q ss_pred             cCCcccCceeEEEEeeCCc-EEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcceeEEEEEcc
Q 010542          254 GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFD  332 (507)
Q Consensus       254 g~~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~  332 (507)
                      |+.|+++..|.+|...++. +.+++.++..+.+|+||+|+|+..+....+.|.|+||...++++.++..+...|+.+.|+
T Consensus       228 ~l~I~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g~~~Kv~l~F~  307 (501)
T KOG0029|consen  228 GLDIHLNKRVRKIKYGDDGAVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFGLVNKVILEFP  307 (501)
T ss_pred             CcceeeceeeEEEEEecCCceEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCCceeEEEEEec
Confidence            9999999999999998776 455656666699999999999999987778999999999999999999999999999999


Q ss_pred             CCCC-CCCccceeecCCCCcee--eeeccccCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhCC--CCCCCcE
Q 010542          333 KVFW-PNVEFLGVVSDTSYGCS--YFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP--DASSPIQ  407 (507)
Q Consensus       333 ~~~~-~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p--~~~~~~~  407 (507)
                      ..|| ++.+++|..........  .+++..+..+..+++++..+..+..+..++++++++.+...|+++|+  ...+|.+
T Consensus       308 ~~fW~~~~d~fg~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~f~~~~~~~p~~  387 (501)
T KOG0029|consen  308 RVFWDQDIDFFGIVPETSVLRGLFTFYDCKPVAGHPVLMSVVVGEAAERVETLSDSEIVKKAMKLLRKVFGSEEVPDPLD  387 (501)
T ss_pred             cccCCCCcCeEEEccccccccchhhhhhcCccCCCCeEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHHhccCcCCCccc
Confidence            9999 56678887766544444  45666666666688888888878889999999999999999999999  6788999


Q ss_pred             EEeccCCCCCCCCcccccCCCCCchHHHHHhcCCCCc-eEEeeccccCcCCchhhHHHHHHHHHHHHHHHHHHH
Q 010542          408 YLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDN-LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE  480 (507)
Q Consensus       408 ~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~l~~  480 (507)
                      +.+.+|..+++..|.|++..++...+.++.+..|+.+ +||||++++..++|+|+||+.||.++|..|+..+..
T Consensus       388 ~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~~  461 (501)
T KOG0029|consen  388 ALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATSRKYPGTMHGAYLSGLRAASDILDSLIE  461 (501)
T ss_pred             eeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhcccCCCchHHHHHhhHHHHHHHHHHHHh
Confidence            9999999999999999988888887888999999988 999999999999999999999999999999998874

>PLN02568 polyamine oxidase

Probab=100.00  E-value=2.5e-44  Score=364.73  Aligned_cols=433  Identities=31%  Similarity=0.449  Sum_probs=306.6

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCC-----CeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHh
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDAS-----FKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISR   99 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G-----~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~   99 (507)
                      +.+..||+|||||++||+||++|++.|     ++|+|||+++++|||++|....|+.+|.|++++++.. .+.+.+++++
T Consensus         2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~g~~-~~~~~~l~~~   80 (539)
T PLN02568          2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGGERIEMGATWIHGIG-GSPVYKIAQE   80 (539)
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCCeEEecCCceeCCCC-CCHHHHHHHH
Confidence            345689999999999999999999887     8999999999999999999888999999999998763 6688999999


Q ss_pred             cCCCeeeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHh--------
Q 010542          100 LGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVR--------  171 (507)
Q Consensus       100 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  171 (507)
                      +|+.........   .. ..               .....++...+..++......+.+.+..++.......        
T Consensus        81 ~g~~~~~~~~~~---~~-~~---------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (539)
T PLN02568         81 AGSLESDEPWEC---MD-GF---------------PDRPKTVAEGGFEVDPSIVESISTLFRGLMDDAQGKLIEPSEVDE  141 (539)
T ss_pred             hCCccccCccee---cc-cc---------------cccceEEccCCcCCCHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence            999532210000   00 00               0002344455556666665555555555554433110        


Q ss_pred             -------------hcCCCCCcHHHHHHHHhccC------hhHHh--hhhHHHHH-HHHHHhhhcc--ccCCccc---ccc
Q 010542          172 -------------EEHDEDMSIQRAISIVFDRR------PELRL--EGLAHKVL-QWYLCRMEGW--FAADAET---ISL  224 (507)
Q Consensus       172 -------------~~~~~~~~~~~~~~~~~~~~------~~l~~--~~~~~~~~-~~~~~~~~~~--~~~~~~~---~s~  224 (507)
                                   .....+.++.++++..+...      +.+..  .+-.+..+ +..+..+..+  .......   +++
T Consensus       142 ~d~~~~~~~~~~~~~~~~~~Sl~~fl~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~  221 (539)
T PLN02568        142 VDFVKLAAKAARVCESGGGGSVGSFLRRGLDAYWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDL  221 (539)
T ss_pred             ccccccchhccchhccCCCCcHHHHHHHHHHHHHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccc
Confidence                         00112347778777543210      00000  00011111 1111111111  1122222   222


Q ss_pred             cccCccccccCCccccccchHHHHHHHhccC---CcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCc
Q 010542          225 KSWDKEELLPGGHGLMVRGYLPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKART  301 (507)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~G~~~l~~~l~~g~---~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~  301 (507)
                      ..........|....+.+|++.|+++|.+.+   +|++|++|++|...++++.|++.+|+++.||+||+|+|+..+....
T Consensus       222 ~~~~~~~~~~g~~~~i~gG~~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~vL~~~~  301 (539)
T PLN02568        222 AAESEYRMFPGEEITIAKGYLSVIEALASVLPPGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSLGVLKAGI  301 (539)
T ss_pred             cccCcceecCCCeEEECCcHHHHHHHHHhhCCCCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHHHHhhcc
Confidence            2222222234556788999999999999877   4999999999999999999999999899999999999999987532


Q ss_pred             ----ccccCCCcHHHHHHHHHcCCcceeEEEEEccCCCCCCC------ccceeecCCCC------ceeeee----cc-cc
Q 010542          302 ----IKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV------EFLGVVSDTSY------GCSYFL----NL-HK  360 (507)
Q Consensus       302 ----~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~g~~~~~~~------~~~~~~----~~-~~  360 (507)
                          +.|.|+||+..++++..++++.++|+++.|+++||...      .....+.....      ...++.    +. ..
T Consensus       302 ~~~~i~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (539)
T PLN02568        302 GEDSGLFSPPLPDFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPI  381 (539)
T ss_pred             ccccceecCCCCHHHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhcccccccc
Confidence                46899999999999999999999999999999998632      11122211100      000111    01 11


Q ss_pred             CCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhCCCC-----------------------CCCcEEEeccCCCCC
Q 010542          361 ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDA-----------------------SSPIQYLVSHWGTDA  417 (507)
Q Consensus       361 ~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p~~-----------------------~~~~~~~~~~w~~~~  417 (507)
                      ..+..+|++++.+..+..+..++++++++.+++.|.++|+..                       ..|..+..++|..+|
T Consensus       382 ~~~~~vL~~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp  461 (539)
T PLN02568        382 HKNSSVLLSWFAGKEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDP  461 (539)
T ss_pred             CCCCCEEEEEeccHHHHHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCC
Confidence            235678999999999999999999999999999999999632                       247888899999999


Q ss_pred             CCCcccccCCCCCchHHHHHhcCCCC-------------ceEEeeccccCcCCchhhHHHHHHHHHHHHHHHH
Q 010542          418 NSLGSYSYDTVGKSHDLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR  477 (507)
Q Consensus       418 ~~~g~~~~~~~~~~~~~~~~~~~~~~-------------~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~  477 (507)
                      ++.|+|++..+|......+.+.+|++             +|||||++++..|+|+|+||+.||.++|++|+..
T Consensus       462 ~~~GsYs~~~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~  534 (539)
T PLN02568        462 LFLGSYSYVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQH  534 (539)
T ss_pred             ccCCccCCCcCCCChhHHHHHhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHH
Confidence            99999998889988777788888875             6999999999999999999999999999998874

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=100.00  E-value=2.1e-41  Score=318.42  Aligned_cols=426  Identities=30%  Similarity=0.421  Sum_probs=312.8

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcC-CCe
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLG-LPL  104 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg-~~~  104 (507)
                      ...+|+|||||+|||+||-+|.+.|+ +|+|+|+.+|+|||++|....+-.+|+||+|++| ..++.+.++.+++| ++.
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG-~~gNpVY~la~~~g~~~~   98 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHG-EEGNPVYELAKEYGDLKL   98 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCCeEeecceeecC-CCCChHHHHHHHhCccce
Confidence            45689999999999999999998875 8999999999999999998887799999999998 36778999999998 332


Q ss_pred             eeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHH
Q 010542          105 YRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAI  184 (507)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (507)
                      .........                       ...-...++..++..+...+.+....+....+.... .....|+.+++
T Consensus        99 ~~~tg~~~~-----------------------~~~~~~~~g~~V~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~SvG~~l  154 (498)
T KOG0685|consen   99 LEVTGPAYV-----------------------DNFHTRSNGEVVPEELLDELNEITVTLSDKLREAEI-AHDEGSVGEYL  154 (498)
T ss_pred             eccCCcccc-----------------------ceeEEEecCccCcHHHHHHHHHHHHhhhhhcccccc-cCccccHHHHH
Confidence            221111110                       022234456677777666655554433333322111 13455777766


Q ss_pred             HHHhccC---hh--HHhhhhHHHHHHHHHHhhhcccc-CCcccccccccCccccccC--CccccccchHHHHHHHhccC-
Q 010542          185 SIVFDRR---PE--LRLEGLAHKVLQWYLCRMEGWFA-ADAETISLKSWDKEELLPG--GHGLMVRGYLPVINTLAKGL-  255 (507)
Q Consensus       185 ~~~~~~~---~~--l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~--~~~~~~~G~~~l~~~l~~g~-  255 (507)
                      ...+...   +.  .....+..++++.|+...+...+ .+.+++|+..+..+....|  .......|+..+++.|.+.+ 
T Consensus       155 n~~~~~~~~~~e~~~~~k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~~~ey~~~~ge~~~~~~~kGy~~iL~~l~~~~p  234 (498)
T KOG0685|consen  155 NSEFWDELRGPENPEIDKTLAEEILNVYFKVECSITGADNLSEVSLRALLEYTECPGEELLIWNKKGYKRILKLLMAVIP  234 (498)
T ss_pred             HHHHHHHhccccccchhhHHHHHHHHHHHHHheeeeccCchhhhhhhhccceeecCchhhheechhHHHHHHHHHhccCC
Confidence            6422211   00  11334555666666666655444 4778888888887777777  66677889999999987622 


Q ss_pred             ----------CcccCceeEEEEeeC-CcEEEEEcCCcEEEcCEEEEecCchhhccCc-ccccCCCcHHHHHHHHHcCCcc
Q 010542          256 ----------DIRLGHRVTKITRHY-IGVKVTVEGGKTFVADAVVVAVPLGVLKART-IKFEPRLPDWKEAAIDDLGVGI  323 (507)
Q Consensus       256 ----------~i~~~~~V~~I~~~~-~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~-~~~~p~l~~~~~~~~~~~~~~~  323 (507)
                                +++++++|.+|..++ +.+.|++.||+.+.||+||+|+++..+...- .-|.|+||...+++|+++.++.
T Consensus       235 ~~~i~~~~~~~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~lgfGt  314 (498)
T KOG0685|consen  235 AQNIELGLWKRIHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIERLGFGT  314 (498)
T ss_pred             CcchhcCchhhhcccccceeeccCCCCcEEEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHHHHHHHhccCCc
Confidence                      466669999999875 6789999999999999999999998876522 2478999999999999999999


Q ss_pred             eeEEEEEccCCCCCCC-ccce-eecCCC-------------CceeeeeccccCCCceEEEEEeccchhHHHhcCCHHHHH
Q 010542          324 ENKIIMHFDKVFWPNV-EFLG-VVSDTS-------------YGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAA  388 (507)
Q Consensus       324 ~~~~~l~~~~~~~~~~-~~~g-~~~~~~-------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~  388 (507)
                      ++|+++.|++||||.. ..+- +..+..             ..+.+....   .-..+|.+++.+..+..+.++++|+++
T Consensus       315 v~KiFLE~E~pfwp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~---~~~~vL~gWiaG~~~~~me~lsdEev~  391 (498)
T KOG0685|consen  315 VNKIFLEFEEPFWPSDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVS---WAPNVLLGWIAGREARHMETLSDEEVL  391 (498)
T ss_pred             cceEEEEccCCCCCCCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcC---cchhhhheeccCCcceehhhCCHHHHH
Confidence            9999999999999963 1111 111111             111111111   123688899999999999999999999


Q ss_pred             HHHHHHHHHhCC--CCCCCcEEEeccCCCCCCCCcccccCCCCCchHHHHHhc--------CCCCceEEeeccccCcCCc
Q 010542          389 NFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLR--------IPVDNLFFAGEATSMSYPG  458 (507)
Q Consensus       389 ~~~~~~L~~~~p--~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~l~~aG~~~~~~~~g  458 (507)
                      +.+...|.++++  +++.|..+....|..++++.|.|++..++.....-..+.        ++-+.|.|||++++..++.
T Consensus       392 e~~~~~lr~fl~n~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I~FAGEaThr~~Ys  471 (498)
T KOG0685|consen  392 EGLTKLLRKFLKNPEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQILFAGEATHRTFYS  471 (498)
T ss_pred             HHHHHHHHHhcCCCCCCCchhhhhhcccCCCccCceeeEeeccccccccchhhccCCccccCCCceEEEcccccccccee
Confidence            999999999985  577788888899999999999999887765432222222        2336899999999998889


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHH
Q 010542          459 SVHGAFSTGLMAAEDCRMRVLE  480 (507)
Q Consensus       459 ~~egA~~SG~~aA~~i~~~l~~  480 (507)
                      ++.||++||.+.|+++++.-..
T Consensus       472 TthGA~~SG~REA~RL~~~y~~  493 (498)
T KOG0685|consen  472 TTHGAVLSGWREADRLLEHYES  493 (498)
T ss_pred             hhhhhHHhhHHHHHHHHHHHHh
Confidence            9999999999999998884433

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=100.00  E-value=4.8e-42  Score=323.56  Aligned_cols=416  Identities=25%  Similarity=0.361  Sum_probs=285.0

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY  105 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~  105 (507)
                      .+..||||||||++||+||+.|.++|++|+|+|+++++|||+.+.+..|.+.|.|++++.+  .++.+..+++++|++..
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~~~~~d~gG~~i~p--~~~~~l~~~k~~gv~~~   82 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYINP--THDALLAYAKEFGVPLE   82 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEeccceeeccCCcccCc--cchhhhhhHHhcCCCCC
Confidence            6789999999999999999999999999999999999999999988888899999998874  56678899999999876


Q ss_pred             eecCCCc--ccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHH--HHHHHHHHHHHHHHHhhc--CCCCCc
Q 010542          106 RTSGDNS--VLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTK--VGEAFESILKETDKVREE--HDEDMS  179 (507)
Q Consensus       106 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~  179 (507)
                      +...+..  ..+......                  .    ...........  ....+..........+..  ..+..-
T Consensus        83 ~fi~~g~~~~~~~~~~~~------------------~----p~~~~~~~~d~~~~~~~~~~~a~~~~~~~~~~t~~~~e~  140 (450)
T COG1231          83 PFIRDGDNVIGYVGSSKS------------------T----PKRSLTAAADVRGLVAELEAKARSAGELDPGLTPEDREL  140 (450)
T ss_pred             ceeccCcccccccccccc------------------c----chhccchhhhhcchhhhhhhhhhcccccCcccCcchhhh
Confidence            5443221  111111000                  0    00000000000  000000000000000000  000000


Q ss_pred             HHHHHHHHhccChhHHhhhhHHHHHHHHHHhhhcc-cc-CCccccccc-cc---------Cccc--cccCCccccccchH
Q 010542          180 IQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGW-FA-ADAETISLK-SW---------DKEE--LLPGGHGLMVRGYL  245 (507)
Q Consensus       180 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~s~~-~~---------~~~~--~~~~~~~~~~~G~~  245 (507)
                      ..+.+..+..    ....+++..       +.... ++ .+....+.. ..         ....  ..........|||+
T Consensus       141 ~~~~~~~W~~----~~~~~~~~~-------~~a~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~~~GGmd  209 (450)
T COG1231         141 DLESLAAWKT----SSLRGLSRD-------PGARVSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQRLGGMD  209 (450)
T ss_pred             hhHHHHhhhh----ccccccccC-------ccceeccCCCCcccccchhhhhhhhhhhhccccccccccchhhccCccHH
Confidence            0111111100    000001000       00000 00 111111100 00         0000  00011122349999


Q ss_pred             HHHHHHhc--cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcc
Q 010542          246 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGI  323 (507)
Q Consensus       246 ~l~~~l~~--g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~  323 (507)
                      .+.+++.+  |-.|+++.+|.+|.+.+++|+|++.+..++.+|.||+|+|+..+.  .+.|.|.+|+...+++..++|.+
T Consensus       210 ~la~Afa~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~--qI~f~P~l~~~~~~a~~~~~y~~  287 (450)
T COG1231         210 QLAEAFAKQLGTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIPLAILG--QIDFAPLLPAEYKQAAKGVPYGS  287 (450)
T ss_pred             HHHHHHHHHhhceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecCHHHHh--hcccCCCCCHHHHHHhcCcCcch
Confidence            99999987  558999999999999999999999984599999999999999987  56889999999999999999999


Q ss_pred             eeEEEEEccCCCCCCCc-cceeecCCC-CceeeeeccccCCCceEEEE-EeccchhHHHhcCCHHHHHHHHHHHHHHhCC
Q 010542          324 ENKIIMHFDKVFWPNVE-FLGVVSDTS-YGCSYFLNLHKATGHCVLVY-MPAGQLARDIEKMSDEAAANFAFTQLKKILP  400 (507)
Q Consensus       324 ~~~~~l~~~~~~~~~~~-~~g~~~~~~-~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p  400 (507)
                      .+|..+.|+++||++.+ ..|....+. .....+++....+|..++.. |..+..+..|..+++++..+.++.++.++||
T Consensus       288 ~~K~~v~f~rpFWee~~~l~G~~~tD~~~~~i~~~s~~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~~g  367 (450)
T COG1231         288 ATKIGVAFSRPFWEEAGILGGESLTDLGLGFISYPSAPFADGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLAKLFG  367 (450)
T ss_pred             heeeeeecCchhhhhcccCCceEeecCCcceEecCccccCCCceEEEeeeeccccceeEecCCHHHHHHHHHHhHhhhCC
Confidence            99999999999999887 555543332 22333333333467777766 6668888889999999999999999999999


Q ss_pred             -CCCCCcEE-EeccCCCCCCCCcccccCCCCCchHHHHHhcCCCCceEEeeccccCcCCchhhHHHHHHHHHHHHHHHHH
Q 010542          401 -DASSPIQY-LVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV  478 (507)
Q Consensus       401 -~~~~~~~~-~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~l  478 (507)
                       ...++.++ ...+|..++++.|++....+++..++.+.+..|.++|||||...++.++||+|||+.||.+||.+|...+
T Consensus       368 ~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~~l  447 (450)
T COG1231         368 DEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFGGWLEGAIRSGQRAAAEIHALL  447 (450)
T ss_pred             hhhccccccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeecccccccchhHHHHHHHHHHHHHHHHhh
Confidence             56666666 7899999999999888888999999999999999999999955555677999999999999999987755

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=100.00  E-value=2.4e-39  Score=329.91  Aligned_cols=405  Identities=20%  Similarity=0.275  Sum_probs=280.0

Q ss_pred             CCeEEEECccHHHHHHHHHHHhC----CCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDA----SFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLP  103 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~----G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~  103 (507)
                      ++||+|||||++||+||++|+++    |++|+|+|+++++||+++|....|+.+|.|+|++++  .+..+.++++++|+.
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~--~~~~~~~l~~~lgl~   79 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLE--RKKSAPDLVKDLGLE   79 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCcccccc--CChHHHHHHHHcCCC
Confidence            47999999999999999999999    999999999999999999998899999999999985  345689999999987


Q ss_pred             eeeec--CCCcccccc-cchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcH
Q 010542          104 LYRTS--GDNSVLYDH-DLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSI  180 (507)
Q Consensus       104 ~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (507)
                      .....  ....+++.+ +...+ ++..+.         .........+.    ....    .......  ......+.|+
T Consensus        80 ~~~~~~~~~~~~~~~~~g~~~~-~p~~~~---------~~~~~~~~~~~----~~~~----~~~~~~~--~~~~~~d~s~  139 (462)
T TIGR00562        80 HVLVSDATGQRYVLVNRGKLMP-VPTKIA---------PFVKTGLFSLG----GKLR----AGMDFIR--PASPGKDESV  139 (462)
T ss_pred             cccccCCCCceEEEECCCceec-CCCChH---------HHhcCCCCCch----hhHH----hhhhhcc--CCCCCCCcCH
Confidence            43221  122222211 11000 000000         00000000000    1111    0111100  0112346899


Q ss_pred             HHHHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCccc---------------------------c
Q 010542          181 QRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEE---------------------------L  232 (507)
Q Consensus       181 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~---------------------------~  232 (507)
                      .+|++.           .+++++.+.++.++ .+.++.+++++|+.......                           .
T Consensus       140 ~e~l~~-----------~~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  208 (462)
T TIGR00562       140 EEFVRR-----------RFGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQL  208 (462)
T ss_pred             HHHHHH-----------hcCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccc
Confidence            998873           35667777777776 56788888877766422000                           0


Q ss_pred             c---cCC-ccccccchHHHHHHHhcc---CCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCccccc
Q 010542          233 L---PGG-HGLMVRGYLPVINTLAKG---LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFE  305 (507)
Q Consensus       233 ~---~~~-~~~~~~G~~~l~~~l~~g---~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~  305 (507)
                      +   .+. ...+.+|++.++++|++.   .+|++|++|++|..++++|+|++.+|+++.||+||+|+|++.+..+    .
T Consensus       209 ~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~l----l  284 (462)
T TIGR00562       209 TAKKQGQDFQTLATGLETLPEEIEKRLKLTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKAAAGL----L  284 (462)
T ss_pred             cccccCCceEecchhHHHHHHHHHHHhccCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHHHHHH----h
Confidence            0   011 345889999999999763   4799999999999999999999888888999999999999987654    3


Q ss_pred             CCCcHHHHHHHHHcCCcceeEEEEEccCCCCCCC-ccceeecCCCC----ceeeeec----cccCCCceEEEEEeccchh
Q 010542          306 PRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV-EFLGVVSDTSY----GCSYFLN----LHKATGHCVLVYMPAGQLA  376 (507)
Q Consensus       306 p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~g~~~~~~~----~~~~~~~----~~~~~~~~~l~~~~~~~~~  376 (507)
                      |++++...+.+.+++|.++.++.+.|++++|+.. ...|++.+...    ....+.+    ...+.+..++++++.+...
T Consensus       285 ~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~  364 (462)
T TIGR00562       285 SELSNSASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATD  364 (462)
T ss_pred             cccCHHHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCC
Confidence            5577788889999999999999999998877632 23455544321    1122221    1234566778888877767


Q ss_pred             HHHhcCCHHHHHHHHHHHHHHhCCCCCCCcEEEeccCCCCCCCCcccccCCCCCc---hHHHHHhcCCCCceEEeecccc
Q 010542          377 RDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKS---HDLYERLRIPVDNLFFAGEATS  453 (507)
Q Consensus       377 ~~~~~~~~ee~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~l~~aG~~~~  453 (507)
                      ..+.+++++++++.++++|.++++...+|..+.+++|..   +.+.|   .+++.   ....+.+..+.+||++||+++.
T Consensus       365 ~~~~~~~~ee~~~~v~~~L~~~~gi~~~p~~~~v~rw~~---a~P~~---~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~  438 (462)
T TIGR00562       365 ESIVDLSENEIINIVLRDLKKVLNINNEPEMLCVTRWHR---AIPQY---HVGHDQRLKEARELLESAYPGVFLTGNSFE  438 (462)
T ss_pred             ccccCCCHHHHHHHHHHHHHHHhCCCCCCcEEEEeEccc---cCCCC---CCChHHHHHHHHHHHHhhCCCEEEeccccC
Confidence            778889999999999999999997544578888999964   22222   34442   2222334455689999999976


Q ss_pred             CcCCchhhHHHHHHHHHHHHHHHHH
Q 010542          454 MSYPGSVHGAFSTGLMAAEDCRMRV  478 (507)
Q Consensus       454 ~~~~g~~egA~~SG~~aA~~i~~~l  478 (507)
                      .   .++++|+.||.++|+++++.+
T Consensus       439 g---~~i~~~i~sg~~~a~~~~~~~  460 (462)
T TIGR00562       439 G---VGIPDCIDQGKAAASDVLTFL  460 (462)
T ss_pred             C---CcHHHHHHHHHHHHHHHHHhh
Confidence            4   699999999999999998765

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=100.00  E-value=1e-38  Score=324.64  Aligned_cols=405  Identities=15%  Similarity=0.212  Sum_probs=270.3

Q ss_pred             CCeEEEECccHHHHHHHHHHHhC------CCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDA------SFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLG  101 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~------G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg  101 (507)
                      +++|+|||||+|||+||++|+++      |++|+|||+++++||+++|....|+.+|.|++++++  .+..+.++++++|
T Consensus         1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~--~~~~~~~l~~~lg   78 (463)
T PRK12416          1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVA--RNEHVMPLVKDLN   78 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhc--CCHHHHHHHHHcC
Confidence            35799999999999999999986      379999999999999999999899999999999874  3456899999999


Q ss_pred             CCeeeec--CCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHH-------HHHHHHHHHHHHHHhh
Q 010542          102 LPLYRTS--GDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKV-------GEAFESILKETDKVRE  172 (507)
Q Consensus       102 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~  172 (507)
                      ++.....  ....+++.++...+                 +.......+|.......       ...+..+.... ....
T Consensus        79 l~~~~~~~~~~~~~~~~~~~~~~-----------------~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  140 (463)
T PRK12416         79 LEEEMVYNETGISYIYSDNTLHP-----------------IPSDTIFGIPMSVESLFSSTLVSTKGKIVALKDFI-TKNK  140 (463)
T ss_pred             CccceecCCCCceEEEECCeEEE-----------------CCCCCeecCCCChHHhhcCCcCCHHHHHHhhhhhc-cCCC
Confidence            9744321  11222222211000                 00000000111100000       00111111111 1111


Q ss_pred             cCCCCCcHHHHHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCcc---------cc----------
Q 010542          173 EHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKE---------EL----------  232 (507)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~---------~~----------  232 (507)
                      ...++.|+.+|++.           .++.++.+.++.++ .+.++.+++++|+......         ..          
T Consensus       141 ~~~~~~sv~~~l~~-----------~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~  209 (463)
T PRK12416        141 EFTKDTSLALFLES-----------FLGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQ  209 (463)
T ss_pred             CCCCCCCHHHHHHH-----------hcCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhc
Confidence            22467899998773           35667777777776 4578888888876431100         00          


Q ss_pred             --cc--CCccccccchHHHHHHHhccC---CcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCccccc
Q 010542          233 --LP--GGHGLMVRGYLPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFE  305 (507)
Q Consensus       233 --~~--~~~~~~~~G~~~l~~~l~~g~---~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~  305 (507)
                        ..  ....++.+||+.++++|.+.+   +|++|++|++|+.+++++.|++.+|+++.||+||+|+|++.+..++  +.
T Consensus       210 ~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~~~~~~ll--~~  287 (463)
T PRK12416        210 FQSAGNKKFVSFKGGLSTIIDRLEEVLTETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPHDIAETLL--QS  287 (463)
T ss_pred             cCCCCCCceEeeCCCHHHHHHHHHHhcccccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCHHHHHhhc--CC
Confidence              01  123468999999999998755   5999999999999999999988888889999999999998877543  23


Q ss_pred             CCCcHHHHHHHHHcCCcceeEEEEEccCCCCC-CCccceeecCCCCc----eeeeecc----ccCCCceEEEEEec--cc
Q 010542          306 PRLPDWKEAAIDDLGVGIENKIIMHFDKVFWP-NVEFLGVVSDTSYG----CSYFLNL----HKATGHCVLVYMPA--GQ  374 (507)
Q Consensus       306 p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~g~~~~~~~~----~~~~~~~----~~~~~~~~l~~~~~--~~  374 (507)
                      |.+    ...+.++.+.+..++++.|+.+.|. +....|++.+....    ...+.+.    ..+++..++..++.  +.
T Consensus       288 ~~l----~~~~~~~~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~  363 (463)
T PRK12416        288 NEL----NEQFHTFKNSSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNP  363 (463)
T ss_pred             cch----hHHHhcCCCCceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCC
Confidence            433    4456778888999999999977552 12335666543321    1111211    11233334444443  35


Q ss_pred             hhHHHhcCCHHHHHHHHHHHHHHhCCCCCCCcEEEeccCCCCCCCCcccccCCCCCc---hHHHHHhcCCCCceEEeecc
Q 010542          375 LARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKS---HDLYERLRIPVDNLFFAGEA  451 (507)
Q Consensus       375 ~~~~~~~~~~ee~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~l~~aG~~  451 (507)
                      ..+.+.+++++++.+.++++|+++++...+|+.+.+.+|...   .+.|   .+++.   ....+.+..+.++|++||++
T Consensus       364 ~~~~~~~~~dee~~~~~~~~L~~~lG~~~~p~~~~v~~W~~a---~P~y---~~~~~~~~~~~~~~l~~~~~~l~~aG~~  437 (463)
T PRK12416        364 VYETIKNYSEEELVRVALYDIEKSLGIKGEPEVVEVTNWKDL---MPKY---HLEHNQAVQSLQEKMMNLYPNIYLAGAS  437 (463)
T ss_pred             CchhhhcCCHHHHHHHHHHHHHHHhCCCCCceEEEEEEcccc---CCCc---CcCHHHHHHHHHHHHHhhCCCeEEeccc
Confidence            566788899999999999999999987777888999999642   2222   23321   12233455567899999999


Q ss_pred             ccCcCCchhhHHHHHHHHHHHHHHHHH
Q 010542          452 TSMSYPGSVHGAFSTGLMAAEDCRMRV  478 (507)
Q Consensus       452 ~~~~~~g~~egA~~SG~~aA~~i~~~l  478 (507)
                      +..   .+|++|+.||.++|++|++.+
T Consensus       438 ~~g---~~i~~ai~sg~~aA~~i~~~~  461 (463)
T PRK12416        438 YYG---VGIGACIGNGKNTANEIIATL  461 (463)
T ss_pred             ccc---ccHHHHHHHHHHHHHHHHHHh
Confidence            775   689999999999999998764

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=100.00  E-value=9.2e-38  Score=317.80  Aligned_cols=402  Identities=21%  Similarity=0.301  Sum_probs=264.2

Q ss_pred             CeEEEECccHHHHHHHHHHHhCC--CeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCeee
Q 010542           29 PSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR  106 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~  106 (507)
                      ++|+|||||+|||+||+.|+++|  ++|+|||+++++|||++|....|+.+|.|+|++++  .++.+.++++++|++...
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~--~~~~~~~l~~~lgl~~~~   78 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLA--RKPSAPALVKELGLEDEL   78 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcC--CcHHHHHHHHHcCCccce
Confidence            47999999999999999999988  89999999999999999999999999999998874  345689999999997432


Q ss_pred             ec--CCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHH----HHHHHHH--HHHHHHHhhcCCCCC
Q 010542          107 TS--GDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKV----GEAFESI--LKETDKVREEHDEDM  178 (507)
Q Consensus       107 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~  178 (507)
                      ..  .....++.++.... ++        .   ..+.     .++.......    .....++  ............++.
T Consensus        79 ~~~~~~~~~~~~~g~~~~-~p--------~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (451)
T PRK11883         79 VANTTGQSYIYVNGKLHP-IP--------P---GTVM-----GIPTSIAPFLFAGLVSPIGKLRAAADLRPPRWKPGQDQ  141 (451)
T ss_pred             ecCCCCcceEEECCeEEE-CC--------C---CCee-----ccCCCchhhhcCCCCCHHHHHHhhCcccCCCCCCCCCc
Confidence            21  12222222221100 00        0   0000     0010000000    0000000  000000111224578


Q ss_pred             cHHHHHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCcc-----------------cc------cc
Q 010542          179 SIQRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKE-----------------EL------LP  234 (507)
Q Consensus       179 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~-----------------~~------~~  234 (507)
                      ++.+++..           .+++++.+.++.++ .+.++.+++.+|+......                 ..      ..
T Consensus       142 s~~e~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (451)
T PRK11883        142 SVGAFFRR-----------RFGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTK  210 (451)
T ss_pred             CHHHHHHH-----------hccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCC
Confidence            89998863           36677778887776 4678888888876542100                 00      01


Q ss_pred             CCccccccchHHHHHHHhccC---CcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHH
Q 010542          235 GGHGLMVRGYLPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDW  311 (507)
Q Consensus       235 ~~~~~~~~G~~~l~~~l~~g~---~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~  311 (507)
                      ....++++|++.++++|.+.+   +|++|++|++|+.+++++.|++++|+++.||+||+|+|+..+..++.      ++.
T Consensus       211 ~~~~~~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~~l~~------~~~  284 (451)
T PRK11883        211 GVFGTLKGGLQSLIEALEEKLPAGTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLPSLFV------APP  284 (451)
T ss_pred             CceEeeccHHHHHHHHHHHhCcCCeEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHHHhcc------Chh
Confidence            123468999999999998855   59999999999999888988888998999999999999998876421      233


Q ss_pred             HHHHHHHcCCcceeEEEEEccCCCCCCCccceeecCCC--C-ceee-eec----cccCCCceEEEEEeccchhHHHhcCC
Q 010542          312 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTS--Y-GCSY-FLN----LHKATGHCVLVYMPAGQLARDIEKMS  383 (507)
Q Consensus       312 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~--~-~~~~-~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~  383 (507)
                      ..+.+..+++.+..++++.|+.+++...+..+++...+  . .... +..    ...+++..++..+..........+++
T Consensus       285 ~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~  364 (451)
T PRK11883        285 AFALFKTIPSTSVATVALAFPESATNLPDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDAT  364 (451)
T ss_pred             HHHHHhCCCCCceEEEEEEeccccCCCCCceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhccCC
Confidence            46778889999999999999988632223334433211  1 1111 211    12234555554444333233456789


Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCcEEEeccCCCCCCCCcccccCCCCCchHHHHHhcCC---CCceEEeeccccCcCCchh
Q 010542          384 DEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIP---VDNLFFAGEATSMSYPGSV  460 (507)
Q Consensus       384 ~ee~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~l~~aG~~~~~~~~g~~  460 (507)
                      ++++++.++++|+++++...++..+.+.+|...      +....++.. ...+.+..+   ++|||++|+++.+   +++
T Consensus       365 ~~~~~~~~~~~L~~~~g~~~~~~~~~~~rw~~a------~p~~~~~~~-~~~~~l~~~l~~~~~l~~aG~~~~g---~~i  434 (451)
T PRK11883        365 DEELVAFVLADLSKVMGITGDPEFTIVQRWKEA------MPQYGVGHI-ERVAELRAGLPHYPGLYVAGASFEG---VGL  434 (451)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCceEEEEeecCcc------CCCCCccHH-HHHHHHHHhhhhCCCEEEECcccCC---ccH
Confidence            999999999999999976556778888999653      222234432 222222222   6799999999753   689


Q ss_pred             hHHHHHHHHHHHHHHH
Q 010542          461 HGAFSTGLMAAEDCRM  476 (507)
Q Consensus       461 egA~~SG~~aA~~i~~  476 (507)
                      ++|+.||..+|++|+.
T Consensus       435 ~~av~sg~~~a~~i~~  450 (451)
T PRK11883        435 PDCIAQAKRAAARLLA  450 (451)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999999875

>PLN02576 protoporphyrinogen oxidase

Probab=100.00  E-value=2.1e-37  Score=317.98  Aligned_cols=407  Identities=21%  Similarity=0.244  Sum_probs=269.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhC-CCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY  105 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~-G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~  105 (507)
                      .++||+|||||++||+||++|+++ |++|+|+|+++++||+++|...+|+.+|.|+|++..  .+..+..++++ |+...
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g~~~d~G~~~~~~--~~~~~~~l~~~-gl~~~   87 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQP--SDPELTSAVDS-GLRDD   87 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCCeEEecCCchhcc--CcHHHHHHHHc-CChhh
Confidence            467999999999999999999999 999999999999999999999999999999999863  34455666666 77532


Q ss_pred             ee--c-CCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHH-HhhcCCCCCcHH
Q 010542          106 RT--S-GDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDK-VREEHDEDMSIQ  181 (507)
Q Consensus       106 ~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  181 (507)
                      ..  . ....+++.++...+ ++..+         ..+...  ..+.  ....    +......... ......++.|+.
T Consensus        88 ~~~~~~~~~~~~~~~g~~~~-~p~~~---------~~~~~~--~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~sv~  149 (496)
T PLN02576         88 LVFPDPQAPRYVVWNGKLRP-LPSNP---------IDLPTF--DLLS--APGK----IRAGLGAFGWKRPPPPGREESVG  149 (496)
T ss_pred             eecCCCCceEEEEECCEEEE-cCCCh---------HHhcCc--CcCC--hhHH----HHHhHHHhhccCCCCCCCCCcHH
Confidence            21  1 11112221111000 00000         000000  0000  0011    1111111100 001224678999


Q ss_pred             HHHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCccc-----------------c-----------
Q 010542          182 RAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEE-----------------L-----------  232 (507)
Q Consensus       182 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~-----------------~-----------  232 (507)
                      +|++.           .++++..+.++.++ .+.++.+++++|+.......                 .           
T Consensus       150 ~~l~~-----------~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~  218 (496)
T PLN02576        150 EFVRR-----------HLGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEP  218 (496)
T ss_pred             HHHHH-----------hcCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccc
Confidence            99873           47778888888886 56888888888876432110                 0           


Q ss_pred             --------ccCCccccccchHHHHHHHhccC---CcccCceeEEEEeeCCc-EEEEEc--CCc-EEEcCEEEEecCchhh
Q 010542          233 --------LPGGHGLMVRGYLPVINTLAKGL---DIRLGHRVTKITRHYIG-VKVTVE--GGK-TFVADAVVVAVPLGVL  297 (507)
Q Consensus       233 --------~~~~~~~~~~G~~~l~~~l~~g~---~i~~~~~V~~I~~~~~~-v~v~~~--~g~-~~~ad~VI~a~p~~~~  297 (507)
                              .......+.+||+.|+++|++.+   +|++|++|++|+..+++ |.|++.  +|+ ++.||+||+|+|+..+
T Consensus       219 ~~~~~~~~~~~~~~~~~gG~~~L~~~la~~l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l  298 (496)
T PLN02576        219 RDPRLPKPKGQTVGSFRGGLQTLPDALAKRLGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVV  298 (496)
T ss_pred             cccccccccCCeeEeccchHHHHHHHHHHhhCcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHH
Confidence                    00113567899999999998754   59999999999998876 665543  453 6899999999999988


Q ss_pred             ccCcccccCCCcHHHHHHHHHcCCcceeEEEEEccCCCCCCC-------ccceeecCCCCc---e-eeeecc----ccCC
Q 010542          298 KARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV-------EFLGVVSDTSYG---C-SYFLNL----HKAT  362 (507)
Q Consensus       298 ~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~g~~~~~~~~---~-~~~~~~----~~~~  362 (507)
                      ..++.    ++++...+.+.+++|.+..++.+.|++++|+..       ...|.+......   . ..+.+.    ..++
T Consensus       299 ~~ll~----~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~  374 (496)
T PLN02576        299 SEMLR----PKSPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPE  374 (496)
T ss_pred             HHHhc----ccCHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCC
Confidence            76532    345667888899999999999999999888642       223443322111   1 122111    1244


Q ss_pred             CceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhCCCCC--CCcEEEeccCCCCCCCCcccccCCCCCchHHHHHhc-
Q 010542          363 GHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLR-  439 (507)
Q Consensus       363 ~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p~~~--~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~-  439 (507)
                      +..++++++.+.....+.+++++++++.++++|.++++...  .|..+.+++|...   .+.|   .+++. ...+.+. 
T Consensus       375 ~~~~l~~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a---~P~~---~~g~~-~~~~~~~~  447 (496)
T PLN02576        375 GRVLLLNYIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKA---IPQY---LLGHL-DVLEAAEK  447 (496)
T ss_pred             CCEEEEEEECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcc---cCCC---CcCHH-HHHHHHHH
Confidence            56677788887777788889999999999999999997433  5666678889642   2222   23332 2122222 


Q ss_pred             --CCC--CceEEeeccccCcCCchhhHHHHHHHHHHHHHHHHHH
Q 010542          440 --IPV--DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL  479 (507)
Q Consensus       440 --~~~--~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~l~  479 (507)
                        .+.  +|||+||+++..   .++++|+.||.++|++|++.+.
T Consensus       448 ~l~~~~~~~l~~aG~~~~g---~~i~~ai~sg~~aA~~i~~~~~  488 (496)
T PLN02576        448 MEKDLGLPGLFLGGNYRGG---VALGKCVESGYEAADLVISYLE  488 (496)
T ss_pred             HHHhcCCCCEEEeccccCC---ccHHHHHHHHHHHHHHHHHHHh
Confidence              222  799999999875   6999999999999999988753

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=100.00  E-value=4.1e-37  Score=298.41  Aligned_cols=398  Identities=23%  Similarity=0.297  Sum_probs=281.0

Q ss_pred             CeEEEECccHHHHHHHHHHHhCC--CeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCeee
Q 010542           29 PSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR  106 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~  106 (507)
                      +.|+|||||++||+|||+|+|++  .+|+|||+.+++||.++|+..+|+.+|.|++.|...  ...+.++++++|++...
T Consensus         1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~--~~~~l~li~eLGled~l   78 (444)
T COG1232           1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLAR--KEEILDLIKELGLEDKL   78 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecc--hHHHHHHHHHhCcHHhh
Confidence            47999999999999999999999  899999999999999999999999999999988743  47789999999997432


Q ss_pred             --ecCCCccccccc-chhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCcHHH
Q 010542          107 --TSGDNSVLYDHD-LESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKE-TDKVREEHDEDMSIQR  182 (507)
Q Consensus       107 --~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  182 (507)
                        +.....+++.++ ...          .+.   ..+........+ +     .....+++.. .........++.++.+
T Consensus        79 ~~~~~~~~~i~~~gkl~p----------~P~---~~i~~ip~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~d~sv~~  139 (444)
T COG1232          79 LWNSTARKYIYYDGKLHP----------IPT---PTILGIPLLLLS-S-----EAGLARALQEFIRPKSWEPKQDISVGE  139 (444)
T ss_pred             ccCCcccceEeeCCcEEE----------CCc---cceeecCCcccc-c-----hhHHHHHHHhhhcccCCCCCCCcCHHH
Confidence              233333333322 211          000   001111111111 0     0111112112 1222234567899999


Q ss_pred             HHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccC-c-------cc-c--------------ccCCcc
Q 010542          183 AISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWD-K-------EE-L--------------LPGGHG  238 (507)
Q Consensus       183 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~-~-------~~-~--------------~~~~~~  238 (507)
                      |++           .++++++++.++.|+ .+.|+.+++.+|+.... .       .. .              ..+..+
T Consensus       140 f~r-----------~~fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~  208 (444)
T COG1232         140 FIR-----------RRFGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFG  208 (444)
T ss_pred             HHH-----------HHHhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCccccccccccc
Confidence            998           468999999999986 78999999999988322 1       00 0              012356


Q ss_pred             ccccchHHHHHHHhccC--CcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHH
Q 010542          239 LMVRGYLPVINTLAKGL--DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAI  316 (507)
Q Consensus       239 ~~~~G~~~l~~~l~~g~--~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~  316 (507)
                      ++.+|+++++++|++.+  +|+++++|++|.++.+++.+.+.+|.++.||.||+|+|++.+..++-.      ....+..
T Consensus       209 ~~~gG~~~l~~al~~~l~~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~------~~~~~~~  282 (444)
T COG1232         209 YLRGGLQSLIEALAEKLEAKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELARLLGD------EAVSKAA  282 (444)
T ss_pred             ccCccHHHHHHHHHHHhhhceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHHHcCC------cchhhhh
Confidence            78899999999999844  688999999999998888888888989999999999999988765322      2346677


Q ss_pred             HHcCCcceeEEEEEccCC---CCCCCccceeecCCCCc----ee---eeeccccCCCceEEEEEeccchhHHHhcCCHHH
Q 010542          317 DDLGVGIENKIIMHFDKV---FWPNVEFLGVVSDTSYG----CS---YFLNLHKATGHCVLVYMPAGQLARDIEKMSDEA  386 (507)
Q Consensus       317 ~~~~~~~~~~~~l~~~~~---~~~~~~~~g~~~~~~~~----~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee  386 (507)
                      ..+.+.....+.+.+++.   ..++.  .|+...+...    +.   .+++...+.|+.++.++...........++|||
T Consensus       283 ~~~~~~s~~~vv~~~~~~~~~~~~~~--~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee  360 (444)
T COG1232         283 KELQYTSVVTVVVGLDEKDNPALPDG--YGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEE  360 (444)
T ss_pred             hhccccceEEEEEEeccccccCCCCc--eEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHH
Confidence            888888888888888874   22322  3443322211    12   222233355777887777666656667788999


Q ss_pred             HHHHHHHHHHHhCCCCCCCcEEEeccCCCCCCCCcccccCCCCCc---hHHHHHhcCCCCceEEeeccccCcCCchhhHH
Q 010542          387 AANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKS---HDLYERLRIPVDNLFFAGEATSMSYPGSVHGA  463 (507)
Q Consensus       387 ~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA  463 (507)
                      +++.++++|.++++...+|..+.+.+|...   ++.|   .+|+.   ...+..+.+.++||+.+|.+...   -++.+|
T Consensus       361 ~~~~~l~~L~~~~~~~~~~~~~~v~r~~~~---~PqY---~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g---~g~~d~  431 (444)
T COG1232         361 LVAAVLDDLKKLGGINGDPVFVEVTRWKYA---MPQY---EVGHLDRLEPIRAALKGAYPGIKSVGRYGEG---VGLPDC  431 (444)
T ss_pred             HHHHHHHHHHHHcCcCcchhheeeeecccc---CCcc---chhHHHHHHHHHHhhccccCCeEEeccCCCC---CCchHH
Confidence            999999999999998888888888999543   3333   24442   33444455555899999999654   378899


Q ss_pred             HHHHHHHHHHHH
Q 010542          464 FSTGLMAAEDCR  475 (507)
Q Consensus       464 ~~SG~~aA~~i~  475 (507)
                      +.+|..||++++
T Consensus       432 I~~g~~aa~~l~  443 (444)
T COG1232         432 IAAGKEAAEQLL  443 (444)
T ss_pred             HHHHHHHHHHhh
Confidence            999999999865

>PRK07233 hypothetical protein; Provisional

Probab=100.00  E-value=1.6e-36  Score=307.38  Aligned_cols=405  Identities=19%  Similarity=0.213  Sum_probs=260.0

Q ss_pred             eEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCee--ee
Q 010542           30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY--RT  107 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~--~~  107 (507)
                      +|+|||||++||+||++|+++|++|+|+|+++++||++++....|+.+|.|+|++.+  .+..+.++++++|+...  ..
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~--~~~~~~~l~~~lg~~~~~~~~   78 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFK--SDEALLELLDELGLEDKLRWR   78 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhcc--ccHHHHHHHHHcCCCCceeec
Confidence            589999999999999999999999999999999999999999899999999998864  45688999999998632  11


Q ss_pred             cCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHH-HhhcCCCCCcHHHHHHH
Q 010542          108 SGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDK-VREEHDEDMSIQRAISI  186 (507)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  186 (507)
                      .....+.+.+. ..+ +..+ .         .+...  ..++.  .......+..  ..... ......++.++.+++..
T Consensus        79 ~~~~~~~~~~~-~~~-~~~~-~---------~~~~~--~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~l~~  140 (434)
T PRK07233         79 ETKTGYYVDGK-LYP-LGTP-L---------ELLRF--PHLSL--IDKFRLGLLT--LLARRIKDWRALDKVPAEEWLRR  140 (434)
T ss_pred             cCceEEEECCe-Eec-CCCH-H---------HHHcC--CCCCH--HHHHHhHHHH--HhhhhcccccccccccHHHHHHH
Confidence            11211222111 100 0000 0         00000  00111  1111111110  00111 11123456888888764


Q ss_pred             HhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCcccc---------ccCCccccccchHHHHHHHhc---
Q 010542          187 VFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEEL---------LPGGHGLMVRGYLPVINTLAK---  253 (507)
Q Consensus       187 ~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~---------~~~~~~~~~~G~~~l~~~l~~---  253 (507)
                      .           ++++..+.++.++ ...++.+++++++..+.....         ......++++|++.++++|.+   
T Consensus       141 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~  209 (434)
T PRK07233        141 W-----------SGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEAIE  209 (434)
T ss_pred             h-----------cCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCHHHHHHHHHHHHH
Confidence            3           3445566666664 457788888888765431110         012356789999999999965   


Q ss_pred             --cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcceeEEEEEc
Q 010542          254 --GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHF  331 (507)
Q Consensus       254 --g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~  331 (507)
                        |++|++|++|++|+.+++++++.+.+++++.||+||+|+|+..+..++    |.+++...+.+..+.+.+..++++.+
T Consensus       210 ~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll----~~~~~~~~~~~~~~~~~~~~~~~l~~  285 (434)
T PRK07233        210 ARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPILARLV----PDLPADVLARLRRIDYQGVVCMVLKL  285 (434)
T ss_pred             hcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHHHHHhhc----CCCcHHHHhhhcccCccceEEEEEEe
Confidence              778999999999999888877555677799999999999998876542    45666667778888888888889999


Q ss_pred             cCCCCCCCccceeecCCCCce--e---eeeccccCCCceEE--EEEeccchhHHHhcCCHHHHHHHHHHHHHHhCCCCCC
Q 010542          332 DKVFWPNVEFLGVVSDTSYGC--S---YFLNLHKATGHCVL--VYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASS  404 (507)
Q Consensus       332 ~~~~~~~~~~~g~~~~~~~~~--~---~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p~~~~  404 (507)
                      ++++++ ..+.....+.....  .   ++.....+++..++  .+++.+..  .+..++++++++.++++|++++|++..
T Consensus       286 ~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~~~~p~~~~  362 (434)
T PRK07233        286 RRPLTD-YYWLNINDPGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGDH--PLWQMSDEELLDRFLSYLRKMFPDFDR  362 (434)
T ss_pred             cCCCCC-CceeeecCCCCCcceEEEecccCCccccCCceEEEEeeecCCCC--hhhcCCHHHHHHHHHHHHHHhCCCCCh
Confidence            987533 11111001000011  1   11111122444443  33444332  245678999999999999999997632


Q ss_pred             --CcEEEeccCCCCCCCCcccccCCCCCchHHHHHhcCCCCceEEeeccccCcCCchhhHHHHHHHHHHHHHHHHHH
Q 010542          405 --PIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL  479 (507)
Q Consensus       405 --~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~l~  479 (507)
                        +....+.+|   +++.+.+   .++. ....+.+.++++|||+||+++...+.++|++|+.||..||++|++.++
T Consensus       363 ~~~~~~~~~r~---~~a~~~~---~~g~-~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~  432 (434)
T PRK07233        363 DDVRAVRISRA---PYAQPIY---EPGY-LDKIPPYDTPIEGLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRR  432 (434)
T ss_pred             hheeeEEEEEe---ccccccc---cCch-hhcCCCcccCcCCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhc
Confidence              344444444   3343332   2332 244455677889999999954443446899999999999999988765

>TIGR02731 phytoene_desat phytoene desaturase

Probab=100.00  E-value=1.2e-35  Score=301.18  Aligned_cols=418  Identities=20%  Similarity=0.250  Sum_probs=257.2

Q ss_pred             eEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEecc-CCCeeeecCCceeeCCCCCCchHHHHHhcCCCeeeec
Q 010542           30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY-SFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTS  108 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~  108 (507)
                      +|+|||||++||+||++|+++|++|+|+|+++++||+++|.. .+|+.+|.|.|++.+  .+.++.++++++|+......
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~--~~~~~~~l~~~lg~~~~~~~   78 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFG--AYPNMLQLLKELNIEDRLQW   78 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceecc--CCchHHHHHHHcCCccceee
Confidence            589999999999999999999999999999999999999864 578999999999874  45578999999998643221


Q ss_pred             CCCcccccc---cchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHH--HhhcCCCCCcHHHH
Q 010542          109 GDNSVLYDH---DLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDK--VREEHDEDMSIQRA  183 (507)
Q Consensus       109 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  183 (507)
                      ......+..   +.....+..+.. +.+.+....++... ..++.  ..... ....+......  -.....++.|+.+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~  153 (453)
T TIGR02731        79 KSHSMIFNQPDKPGTFSRFDFPDI-PAPFNGVAAILRNN-DMLTW--PEKIK-FAIGLLPAIVRGQKYVEEQDKYTVTEW  153 (453)
T ss_pred             cCCceEEecCCCCcceeeccCCCC-CCCHHHHHHHhcCc-CCCCH--HHHHH-HHHHhHHHHhcCccchhhhccCCHHHH
Confidence            111111110   000000000000 00000000000000 00111  00100 00001100000  00112357889888


Q ss_pred             HHHHhccChhHHhhhhHHHHHHHHHHhhh-ccccCCcccccccccCcccc--cc--CCc--cccccc-----hHHHHHHH
Q 010542          184 ISIVFDRRPELRLEGLAHKVLQWYLCRME-GWFAADAETISLKSWDKEEL--LP--GGH--GLMVRG-----YLPVINTL  251 (507)
Q Consensus       184 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~--~~--~~~--~~~~~G-----~~~l~~~l  251 (507)
                      ++.          .++++.+.+.++.++. +.++.+++++|+..+.....  +.  .+.  ....++     ++.+.+.|
T Consensus       154 l~~----------~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l  223 (453)
T TIGR02731       154 LRK----------QGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPIVDYI  223 (453)
T ss_pred             HHH----------cCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCChHHHHHHHHHHH
Confidence            763          3466666766767763 56677888888766541110  11  111  112222     45555555


Q ss_pred             hc-cCCcccCceeEEEEeeCCc-E-EEEEcCCc-----EEEcCEEEEecCchhhccCcccccCCCc-HHHHHHHHHcCCc
Q 010542          252 AK-GLDIRLGHRVTKITRHYIG-V-KVTVEGGK-----TFVADAVVVAVPLGVLKARTIKFEPRLP-DWKEAAIDDLGVG  322 (507)
Q Consensus       252 ~~-g~~i~~~~~V~~I~~~~~~-v-~v~~~~g~-----~~~ad~VI~a~p~~~~~~l~~~~~p~l~-~~~~~~~~~~~~~  322 (507)
                      .+ |++|++|++|++|...+++ + .|++.+|+     ++.+|.||+|+|++.+..++   .+..+ ....+.+..+++.
T Consensus       224 ~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL---~~~~~~~~~~~~~~~~~~~  300 (453)
T TIGR02731       224 TSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLL---PQPWKQMPFFQKLNGLEGV  300 (453)
T ss_pred             HhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhC---chhhhcCHHHHHhhcCCCC
Confidence            43 8899999999999865443 4 36666665     78999999999998876542   11121 2345566677788


Q ss_pred             ceeEEEEEccCCCCCCCccceeecCCCCceeeee-c----cccCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHH
Q 010542          323 IENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFL-N----LHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKK  397 (507)
Q Consensus       323 ~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~-~----~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~  397 (507)
                      +..++++.++++++....+.  +......+.... .    ...++++.++.++...  ...+.++++|++++.++++|++
T Consensus       301 ~~~~v~l~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~ee~~~~v~~~L~~  376 (453)
T TIGR02731       301 PVINVHIWFDRKLTTVDHLL--FSRSPLLSVYADMSETCKEYADPDKSMLELVFAP--AADWIGRSDEEIIDATMAELAK  376 (453)
T ss_pred             cEEEEEEEEccccCCCCcee--eeCCCcceeecchhhhChhhcCCCCeEEEEEecC--hhhhhcCCHHHHHHHHHHHHHH
Confidence            89999999999987543221  111111110000 0    0112334444444332  3567789999999999999999


Q ss_pred             hCCCC---CCCcEEEeccCCCCCCCCcccccCCCCCchHHHHHhcCCCCceEEeeccccCcCCchhhHHHHHHHHHHHHH
Q 010542          398 ILPDA---SSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDC  474 (507)
Q Consensus       398 ~~p~~---~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i  474 (507)
                      ++|..   ..+.++..+.|..++++.  |. ..||. ....+.+.+|++|||+||++++.+|+|+||||+.||.+||++|
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~p~a~--~~-~~pg~-~~~~~~~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v  452 (453)
T TIGR02731       377 LFPNHIKADSPAKILKYKVVKTPRSV--YK-TTPGR-QQYRPHQKTPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAI  452 (453)
T ss_pred             hCCcccCCCCCceEEEEEEEECCCce--ec-cCCCC-hhhCccccCccCCEEEeehhccCcccccHHHHHHHHHHHHHHh
Confidence            99863   246667778888888773  32 34664 4667788999999999999999889999999999999999986


Q ss_pred             H
Q 010542          475 R  475 (507)
Q Consensus       475 ~  475 (507)
                      +
T Consensus       453 ~  453 (453)
T TIGR02731       453 V  453 (453)
T ss_pred             C
Confidence            3

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=100.00  E-value=1.3e-36  Score=308.99  Aligned_cols=234  Identities=37%  Similarity=0.538  Sum_probs=189.7

Q ss_pred             cccchHHHHHHHhc--cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHH
Q 010542          240 MVRGYLPVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAID  317 (507)
Q Consensus       240 ~~~G~~~l~~~l~~--g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~  317 (507)
                      ..+++..+...+.+  |.+|++|++|++|+.+++++.|++.+|+++.||+||+|+|+..+..  +.+.|.+|...++++.
T Consensus       207 ~~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~--i~~~p~l~~~~~~a~~  284 (450)
T PF01593_consen  207 GMGGLSLALALAAEELGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKN--ILLLPPLPEDKRRAIE  284 (450)
T ss_dssp             ETTTTHHHHHHHHHHHGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHT--SEEESTSHHHHHHHHH
T ss_pred             cccchhHHHHHHHhhcCceeecCCcceeccccccccccccccceEEecceeeecCchhhhhh--hhhccccccccccccc
Confidence            34555555555544  6799999999999999999999999999999999999999999874  5678899998899999


Q ss_pred             HcCCcceeEEEEEccCCCCCCC-ccceeecCCC--CceeeeeccccC--CCceEEEEEeccchhHHHhcCCHHHHHHHHH
Q 010542          318 DLGVGIENKIIMHFDKVFWPNV-EFLGVVSDTS--YGCSYFLNLHKA--TGHCVLVYMPAGQLARDIEKMSDEAAANFAF  392 (507)
Q Consensus       318 ~~~~~~~~~~~l~~~~~~~~~~-~~~g~~~~~~--~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~  392 (507)
                      .+++.+..++++.|+.++|+.. ...+.+..+.  ....+......+  ++...++.++.+.....+..++++++++.++
T Consensus       285 ~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~  364 (450)
T PF01593_consen  285 NLPYSSVSKVFLGFDRPFWPPDIDFFGILYSDGFSPIGYVSDPSKFPGRPGGGVLTSYVGGPDAPEWDDLSDEEILERVL  364 (450)
T ss_dssp             TEEEEEEEEEEEEESSGGGGSTTTESEEEEESSTSSEEEEEEECCTTSCTTSEEEEEEEEHHHHHHHTTSCHHHHHHHHH
T ss_pred             ccccCcceeEEEeeecccccccccccceecccCccccccccccccCcccccCCcceeeeeccccchhcccchhhhHHHHH
Confidence            9999999999999999999875 4556655444  222222222222  3567788888877778889999999999999


Q ss_pred             HHHHHhCC--CCCCCcEEEeccCCCCCCCCcccccCCCCCchHHHHHhcCCC-CceEEeeccccCcCCchhhHHHHHHHH
Q 010542          393 TQLKKILP--DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV-DNLFFAGEATSMSYPGSVHGAFSTGLM  469 (507)
Q Consensus       393 ~~L~~~~p--~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~l~~aG~~~~~~~~g~~egA~~SG~~  469 (507)
                      ++|++++|  ...+|.++.+.+|..+++..+++.+..++.....++.+.+|+ +||||||++++++++|+++||+.||.+
T Consensus       365 ~~L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~~  444 (450)
T PF01593_consen  365 DDLRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGRR  444 (450)
T ss_dssp             HHHHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHHH
T ss_pred             HHhhhccccccccccccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCCCcHHHHHHHHHH
Confidence            99999999  456677888999999999988888776776556888899999 699999999998777899999999999


Q ss_pred             HHHHHH
Q 010542          470 AAEDCR  475 (507)
Q Consensus       470 aA~~i~  475 (507)
                      ||++|+
T Consensus       445 aA~~il  450 (450)
T PF01593_consen  445 AAEEIL  450 (450)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            999986

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PLN02612 phytoene desaturase

Probab=100.00  E-value=1.4e-35  Score=304.91  Aligned_cols=427  Identities=20%  Similarity=0.228  Sum_probs=254.6

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEecc-CCCeeeecCCceeeCCCCCCchHHHHHhcCCCe
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY-SFGFPVDLGASWLHGVCQENPLAPVISRLGLPL  104 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~  104 (507)
                      ....+|+|||||++||+||++|+++|++|+|+|+++++||+++|+. .+|+.+|.|+|++.+.  ++++.++++++|+..
T Consensus        91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~--~~~~~~ll~elG~~~  168 (567)
T PLN02612         91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGA--YPNVQNLFGELGIND  168 (567)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCC--CchHHHHHHHhCCcc
Confidence            4568899999999999999999999999999999999999999865 4789999999999854  456899999999964


Q ss_pred             eeecCCCcccc--ccc-chhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHH--HHhhcCCCCCc
Q 010542          105 YRTSGDNSVLY--DHD-LESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETD--KVREEHDEDMS  179 (507)
Q Consensus       105 ~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  179 (507)
                      ..........+  ... .....+..+...+.+.+....++.... .+  .+.+.+. ....+.....  .......++.|
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~-~l--s~~~kl~-~~~~~~~~~~~~~~~~~~~d~~S  244 (567)
T PLN02612        169 RLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNE-ML--TWPEKIK-FAIGLLPAIVGGQAYVEAQDGLS  244 (567)
T ss_pred             cceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCc-cC--CHHHHHH-HHHhhhHHhcccchhhhhcCcCc
Confidence            32111111111  100 000000000000000000000000000 00  0001100 0000000000  00112345788


Q ss_pred             HHHHHHHHhccChhHHhhhhHHHHHHHHHHhhh-ccccCCcccccccccCcc--ccccC----Cccccccch-----HHH
Q 010542          180 IQRAISIVFDRRPELRLEGLAHKVLQWYLCRME-GWFAADAETISLKSWDKE--ELLPG----GHGLMVRGY-----LPV  247 (507)
Q Consensus       180 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~--~~~~~----~~~~~~~G~-----~~l  247 (507)
                      +.+|++.          .++++.+.+.++.++. +.+..+++++|+..+...  ..+.+    ...++.++.     +.+
T Consensus       245 v~e~l~~----------~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~~~G~~~~~l~~~l  314 (567)
T PLN02612        245 VKEWMRK----------QGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPI  314 (567)
T ss_pred             HHHHHHh----------cCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHHhccCCceEeeecCCchHHHHHHH
Confidence            8888764          2455556666666653 455667777776654411  01111    112233332     444


Q ss_pred             HHHHh-ccCCcccCceeEEEEeeCCc--EEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcce
Q 010542          248 INTLA-KGLDIRLGHRVTKITRHYIG--VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIE  324 (507)
Q Consensus       248 ~~~l~-~g~~i~~~~~V~~I~~~~~~--v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~  324 (507)
                      ++.|. .|++|++|++|++|..++++  +.+.+.+|+++.+|+||+|+|+..+..++....  .+....+.+..+.+.++
T Consensus       315 ~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~--~~~~~~~~l~~l~~~~v  392 (567)
T PLN02612        315 VDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQW--KEIPYFKKLDKLVGVPV  392 (567)
T ss_pred             HHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchh--cCcHHHHHHHhcCCCCe
Confidence            55443 38899999999999986555  337777898999999999999988775432211  12234555667778889


Q ss_pred             eEEEEEccCCCCCCCccceeecCCC-Cceeeeecc-----ccCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHh
Q 010542          325 NKIIMHFDKVFWPNVEFLGVVSDTS-YGCSYFLNL-----HKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKI  398 (507)
Q Consensus       325 ~~~~l~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~  398 (507)
                      .++++.|++++|....  +.+.... ....+.+-+     ..+++..++.+...  .+.+|.+++++++++.++++|+++
T Consensus       393 ~~v~l~~dr~~~~~~~--~~~~~~~~~~~~~~d~S~~~~~~~~~~~~ll~~~~~--~a~~~~~~sdeei~e~vl~~L~~l  468 (567)
T PLN02612        393 INVHIWFDRKLKNTYD--HLLFSRSPLLSVYADMSTTCKEYYDPNKSMLELVFA--PAEEWISRSDEDIIDATMKELAKL  468 (567)
T ss_pred             EEEEEEECcccCCCCC--ceeecCCCCceeehhhhhcchhhcCCCCeEEEEEEE--cChhhhcCCHHHHHHHHHHHHHHH
Confidence            9999999999875321  1111111 111111100     01234444443322  456788899999999999999999


Q ss_pred             CCCCCCC----cEEEeccCCCCCCCCcccccCCCCCchHHHHHhcCCCCceEEeeccccCcCCchhhHHHHHHHHHHHHH
Q 010542          399 LPDASSP----IQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDC  474 (507)
Q Consensus       399 ~p~~~~~----~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i  474 (507)
                      ||....+    ..+....+...|.+.  |.. .|+.. ..++..++|++|||+|||++..+|+++||||+.||++||++|
T Consensus       469 fp~~~~~~~~~~~i~~~~~v~~P~a~--~~~-~pg~~-~~rp~~~tPi~~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I  544 (567)
T PLN02612        469 FPDEISADQSKAKILKYHVVKTPRSV--YKT-VPNCE-PCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSI  544 (567)
T ss_pred             CCcccccccCCceEEEEEEeccCCce--EEe-CCCCc-ccCccccCccCCEEEeecceeCCchhhHHHHHHHHHHHHHHH
Confidence            9975322    222222333333321  211 23322 234556789999999999999888899999999999999999


Q ss_pred             HHHH
Q 010542          475 RMRV  478 (507)
Q Consensus       475 ~~~l  478 (507)
                      ++++
T Consensus       545 ~~~~  548 (567)
T PLN02612        545 VQDY  548 (567)
T ss_pred             HHHh
Confidence            8876

>PRK07208 hypothetical protein; Provisional

Probab=100.00  E-value=1.2e-34  Score=296.20  Aligned_cols=401  Identities=19%  Similarity=0.144  Sum_probs=257.1

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCC-e
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLP-L  104 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~-~  104 (507)
                      .+++||+|||||++||+||++|+++|++|+|+|+++++||+++|....|+.+|.|+|++..  .+..+.+++++++.. .
T Consensus         2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g~~~d~G~h~~~~--~~~~~~~l~~~l~~~~~   79 (479)
T PRK07208          2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGNRFDIGGHRFFS--KSPEVMDLWNEILPDDD   79 (479)
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCCceEccCCceecc--CCHHHHHHHHHhcCCCc
Confidence            4678999999999999999999999999999999999999999998899999999999873  566789999999862 1


Q ss_pred             eeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHH---HHHH--HHHHHHHHHHHHHHHhhcCCCCCc
Q 010542          105 YRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQE---LVTK--VGEAFESILKETDKVREEHDEDMS  179 (507)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  179 (507)
                      .........++..+...                         .+|..   ....  ....+...............++.|
T Consensus        80 ~~~~~~~~~~~~~g~~~-------------------------~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s  134 (479)
T PRK07208         80 FLLRPRLSRIYYRGKFF-------------------------DYPLKAFDALKNLGLWRTAKCGASYLKARLRPRKEEDS  134 (479)
T ss_pred             cccccccceEEECCEEe-------------------------cCCcchhHHHHhCCHhHHHHHHHHHHHHhcCCCCCCCC
Confidence            11111111111111000                         01100   0000  001111111111111112246789


Q ss_pred             HHHHHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCccc------------c--------------
Q 010542          180 IQRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEE------------L--------------  232 (507)
Q Consensus       180 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~------------~--------------  232 (507)
                      +.+|++.           .+++++.+.++.++ .+.|+.+++++|+.+.....            .              
T Consensus       135 ~~e~l~~-----------~~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (479)
T PRK07208        135 FEDWVIN-----------RFGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVE  203 (479)
T ss_pred             HHHHHHH-----------hhCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCcc
Confidence            9999873           46677788888876 45788888888876432110            0              


Q ss_pred             --ccCCccccccchHHHHHHHhc-----cCCcccCceeEEEEeeCCcEE--EEE--cCCc--EEEcCEEEEecCchhhcc
Q 010542          233 --LPGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGVK--VTV--EGGK--TFVADAVVVAVPLGVLKA  299 (507)
Q Consensus       233 --~~~~~~~~~~G~~~l~~~l~~-----g~~i~~~~~V~~I~~~~~~v~--v~~--~~g~--~~~ad~VI~a~p~~~~~~  299 (507)
                        ......++++|++.++++|.+     |++|++|++|++|..+++++.  ++.  .+|+  ++.||+||+|+|+..+..
T Consensus       204 ~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~  283 (479)
T PRK07208        204 TSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVA  283 (479)
T ss_pred             ccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHH
Confidence              011244678999999998864     779999999999999887643  332  2353  588999999999987765


Q ss_pred             CcccccCCCcHHHHHHHHHcCCcceeEEEEEccCCCCCCCccceeecCCCCc------eeeeeccccCCCce-EEE-EEe
Q 010542          300 RTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYG------CSYFLNLHKATGHC-VLV-YMP  371 (507)
Q Consensus       300 l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~------~~~~~~~~~~~~~~-~l~-~~~  371 (507)
                      ++   .+.+++...+.+..+++.+..++++.++++.+....+. ++.+....      ...+.+...|++.. .+. .+.
T Consensus       284 ~l---~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~  359 (479)
T PRK07208        284 AL---DPPPPPEVRAAAAGLRYRDFITVGLLVKELNLFPDNWI-YIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYF  359 (479)
T ss_pred             hc---CCCCCHHHHHHHhCCCcceeEEEEEEecCCCCCCCceE-EecCCCCccceecccccCCcccCCCCCceEEEEEEE
Confidence            43   35577777788888999888889999987643222221 11111100      01111222244542 222 122


Q ss_pred             ccchhHHHhcCCHHHHHHHHHHHHHHhCCC-CCCCcEEEeccCCCCCCCCcccccCCCCCchHHHHH---hcCCCCceEE
Q 010542          372 AGQLARDIEKMSDEAAANFAFTQLKKILPD-ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYER---LRIPVDNLFF  447 (507)
Q Consensus       372 ~~~~~~~~~~~~~ee~~~~~~~~L~~~~p~-~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~l~~  447 (507)
                      .. ......++++++++++++++|.++.+. ...+..+.+.+|.   .+.+.|.   .++. ...+.   +.++.+||++
T Consensus       360 ~~-~~~~~~~~~deel~~~~~~~L~~l~~~~~~~~~~~~v~r~~---~a~P~y~---~~~~-~~~~~~~~~~~~~~~l~l  431 (479)
T PRK07208        360 CF-EGDDLWNMSDEDLIALAIQELARLGLIRPADVEDGFVVRVP---KAYPVYD---GTYE-RNVEIIRDLLDHFPNLHL  431 (479)
T ss_pred             cc-CCCccccCCHHHHHHHHHHHHHHcCCCChhheeEEEEEEec---CcccCCC---chHH-HHHHHHHHHHHhcCCcee
Confidence            11 122355789999999999999997432 2234556667774   2333332   3332 22222   3467799999


Q ss_pred             eeccccCcCCchhhHHHHHHHHHHHHHHHH
Q 010542          448 AGEATSMSYPGSVHGAFSTGLMAAEDCRMR  477 (507)
Q Consensus       448 aG~~~~~~~~g~~egA~~SG~~aA~~i~~~  477 (507)
                      +|++....+ .++|+|+.||.++|++|+..
T Consensus       432 aGr~~~~~~-~~~d~a~~sg~~~a~~i~~~  460 (479)
T PRK07208        432 VGRNGMHRY-NNQDHSMLTAMLAVENIIAG  460 (479)
T ss_pred             ecccccccc-CChhHHHHHHHHHHHHHhcC
Confidence            999876655 69999999999999987664

>PLN02487 zeta-carotene desaturase

Probab=100.00  E-value=1.1e-33  Score=286.85  Aligned_cols=433  Identities=17%  Similarity=0.131  Sum_probs=264.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEecc-CCCeeeecCCceeeCCCCCCchHHHHHhcCCCee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY-SFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY  105 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~  105 (507)
                      ++++|+|||||++||++|+.|+++|++|+|+|+++++||++++.. ..|+.+|+|.|++.+.  +.++.++++++|+...
T Consensus        74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~--~~~~~~ll~~LGl~~~  151 (569)
T PLN02487         74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGC--YNNLFRLMKKVGADEN  151 (569)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCC--cHHHHHHHHhcCCccc
Confidence            457999999999999999999999999999999999999999874 5699999999999754  4579999999999743


Q ss_pred             eecCCCcc-cccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHH----HHHHHHHHH----H-hhcCC
Q 010542          106 RTSGDNSV-LYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAF----ESILKETDK----V-REEHD  175 (507)
Q Consensus       106 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----~-~~~~~  175 (507)
                      ........ +...+.....+........+.+....++....  +.  +..++....    ..+......    . .....
T Consensus       152 ~~~~~~~~~~~~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~--Ls--~~dklr~~~~l~~~~~~~al~~~~~~~~~~~~~  227 (569)
T PLN02487        152 LLVKDHTHTFVNKGGDVGELDFRFPVGAPLHGIKAFLTTNQ--LE--PYDKARNALALATSPVVRALVDPDGAMRDIRDL  227 (569)
T ss_pred             ccccccceeEEecCCEEeeeccCCCCCchhhhHHHHHcCCC--CC--HHHHHhhcccccccchhhhccCccccccccccc
Confidence            22111111 11111000000000000000000000000000  00  000000000    000000000    0 01134


Q ss_pred             CCCcHHHHHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCcccc----cc--CCccccccchHH-H
Q 010542          176 EDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEEL----LP--GGHGLMVRGYLP-V  247 (507)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~----~~--~~~~~~~~G~~~-l  247 (507)
                      ++.++.+|++..          ..+.++++.++.++ .+.+..+++++|+..+.....    ..  +..+++.+|+.. +
T Consensus       228 d~~sv~~~l~r~----------~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg~~~~l  297 (569)
T PLN02487        228 DDISFSDWFTSH----------GGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVRL  297 (569)
T ss_pred             cCCcHHHHHHHh----------CCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCcceeeecCCCchHHH
Confidence            568899988743          33345788888887 468889999999876552211    11  124577889884 7


Q ss_pred             HHHHhc-----cCCcccCceeEEEEeeC--Cc---E-EEEE---cCCcEEEcCEEEEecCchhhccCcccccCCCcHHHH
Q 010542          248 INTLAK-----GLDIRLGHRVTKITRHY--IG---V-KVTV---EGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKE  313 (507)
Q Consensus       248 ~~~l~~-----g~~i~~~~~V~~I~~~~--~~---v-~v~~---~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~  313 (507)
                      .+.+.+     |++|+++++|++|..++  ++   + .|++   .+++++.+|.||+|+|+..+.+++....+..  ...
T Consensus       298 ~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~~~~~~--~~~  375 (569)
T PLN02487        298 SGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPEQWREY--EFF  375 (569)
T ss_pred             HHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCchhhcc--HHH
Confidence            766643     88999999999999873  22   3 2555   2344689999999999998876542221111  125


Q ss_pred             HHHHHcCCcceeEEEEEccCCCCCCC---------ccceee-----cCCCCceeee---eccc---cCCCceEEEEEecc
Q 010542          314 AAIDDLGVGIENKIIMHFDKVFWPNV---------EFLGVV-----SDTSYGCSYF---LNLH---KATGHCVLVYMPAG  373 (507)
Q Consensus       314 ~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~g~~-----~~~~~~~~~~---~~~~---~~~~~~~l~~~~~~  373 (507)
                      ..+..+...++..+.+.||.++-...         .+.|..     .+..+.+...   ....   .......+.+++..
T Consensus       376 ~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vis~  455 (569)
T PLN02487        376 DNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTP  455 (569)
T ss_pred             hHHhcCCCeeEEEEEEEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHcccCCceEEEEEEcC
Confidence            56778878888899999997653211         122211     1111222001   0000   11122445554443


Q ss_pred             chhHHHhcCCHHHHHHHHHHHHHHhCCCCCC--CcEEEeccCCCCCCCCcccccCCCCCchHHHHHhcCCCCceEEeecc
Q 010542          374 QLARDIEKMSDEAAANFAFTQLKKILPDASS--PIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEA  451 (507)
Q Consensus       374 ~~~~~~~~~~~ee~~~~~~~~L~~~~p~~~~--~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~  451 (507)
                      .  ..+..++++++++++.++|.+++|....  +.++.+.+.....+.      ..||.. ..+|..++|++|||+||||
T Consensus       456 a--~~~~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~------~~pg~~-~~RP~~~T~~~nl~LAGD~  526 (569)
T PLN02487        456 G--DPYMPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYR------EAPGMD-PFRPDQKTPISNFFLAGSY  526 (569)
T ss_pred             C--ccccCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceec------cCCCcc-ccCCCCCCCCCCEEEeCcc
Confidence            3  3577899999999999999999987543  233344444332221      234442 4457778999999999999


Q ss_pred             ccCcCCchhhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 010542          452 TSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGELD  486 (507)
Q Consensus       452 ~~~~~~g~~egA~~SG~~aA~~i~~~l~~~~~~~~  486 (507)
                      +..+|+.+||||+.||..||+.|+++...-.++..
T Consensus       527 t~~~yPat~EgAv~SG~~AA~~i~~~~~~~~~~~~  561 (569)
T PLN02487        527 TKQDYIDSMEGATLSGRQAAAYICEAGEELAGLRK  561 (569)
T ss_pred             cccCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            99999999999999999999999887744434333

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=100.00  E-value=3.3e-33  Score=281.83  Aligned_cols=397  Identities=23%  Similarity=0.258  Sum_probs=252.7

Q ss_pred             HHHHHHHhCCCeEEEEecCCCCCceeEeccCCCe--eeecCCceeeCCCCCCchHHHHHhcCCCeeeecCCCccccc--c
Q 010542           42 AAARALHDASFKVVLLESRDRVGGRVHTDYSFGF--PVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYD--H  117 (507)
Q Consensus        42 ~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~--~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~--~  117 (507)
                      +||++|+++|++|+|||+++++||+++|...+|+  .+|.|+|++++  .+..+.++++++|++.........+.+.  +
T Consensus         1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~--~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~   78 (419)
T TIGR03467         1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLG--AYTNLLALLRRIGAEPRLQGPRLPLPFYDPG   78 (419)
T ss_pred             ChHHHHHhCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEc--ccHHHHHHHHHhCCchhhhcccCCcceecCC
Confidence            5899999999999999999999999999988754  59999999974  4567899999999975432111111111  1


Q ss_pred             cchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHhccChhHHhh
Q 010542          118 DLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLE  197 (507)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  197 (507)
                      +... .+..... ..+......+.  ....++......    +...+...........++.|+.++++..          
T Consensus        79 ~~~~-~~~~~~~-~~p~~~~~~~~--~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~~~l~~~----------  140 (419)
T TIGR03467        79 GRLS-RLRLSRL-PAPLHLARGLL--RAPGLSWADKLA----LARALLALRRTRFRALDDTTVGDWLQAA----------  140 (419)
T ss_pred             CCce-eecCCCC-CCCHHHHHHHh--cCCCCCHHHHHH----HHHHHHHHHhcCccccCCCCHHHHHHHc----------
Confidence            1100 0000000 00000000000  000111111111    1111111111111345678999988742          


Q ss_pred             hhHHHHHHHHHHhh-hccccCCcccccccccCccc---ccc----CCccccccchHHHHHH-Hh-----ccCCcccCcee
Q 010542          198 GLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEE---LLP----GGHGLMVRGYLPVINT-LA-----KGLDIRLGHRV  263 (507)
Q Consensus       198 ~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~---~~~----~~~~~~~~G~~~l~~~-l~-----~g~~i~~~~~V  263 (507)
                      .+++++.+.++.++ .+.++.+++++|+..+....   ...    ....++.+|++.++.. |+     .|++|++|++|
T Consensus       141 ~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V  220 (419)
T TIGR03467       141 GQSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRV  220 (419)
T ss_pred             CCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCee
Confidence            34667777777775 45788888888877554211   111    1255678898776533 43     38899999999


Q ss_pred             EEEEeeCCcEEEEE-cCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcceeEEEEEccCCCCCCCccc
Q 010542          264 TKITRHYIGVKVTV-EGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFL  342 (507)
Q Consensus       264 ~~I~~~~~~v~v~~-~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  342 (507)
                      ++|+.+++++.+.. .+|+++.||+||+|+|+..+..++    |.  +...+.+..+++.++.++++.|++++|.+.++.
T Consensus       221 ~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll----~~--~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~  294 (419)
T TIGR03467       221 RSIEANAGGIRALVLSGGETLPADAVVLAVPPRHAASLL----PG--EDLGALLTALGYSPITTVHLRLDRAVRLPAPMV  294 (419)
T ss_pred             eEEEEcCCcceEEEecCCccccCCEEEEcCCHHHHHHhC----CC--chHHHHHhhcCCcceEEEEEEeCCCcCCCCCee
Confidence            99999988876543 467789999999999999887642    11  145667888999999999999999998665555


Q ss_pred             eeecCCCCceeeeeccccCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhCCCC--CCCcEEEeccCCCCCCCC
Q 010542          343 GVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDA--SSPIQYLVSHWGTDANSL  420 (507)
Q Consensus       343 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p~~--~~~~~~~~~~w~~~~~~~  420 (507)
                      |.....  ..+.+.....++....+.+++.+  ...+.+++++++.+.++++|.+++|..  ..+....+.+|....+. 
T Consensus       295 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-  369 (419)
T TIGR03467       295 GLVGGL--AQWLFDRGQLAGEPGYLAVVISA--ARDLVDLPREELADRIVAELRRAFPRVAGAKPLWARVIKEKRATFA-  369 (419)
T ss_pred             eecCCc--eeEEEECCcCCCCCCEEEEEEec--chhhccCCHHHHHHHHHHHHHHhcCccccCCccceEEEEccCCccc-
Confidence            554322  22233322222233444444433  355778899999999999999999865  23445555666443221 


Q ss_pred             cccccCCCCCchHHHHHhcCCCCceEEeeccccCcCCchhhHHHHHHHHHHHHHH
Q 010542          421 GSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR  475 (507)
Q Consensus       421 g~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~  475 (507)
                          . .++.. ..++.+.+|.+|||||||+++++++++||||+.||.+||++|+
T Consensus       370 ----~-~~g~~-~~~~~~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~  418 (419)
T TIGR03467       370 ----A-TPGLN-RLRPGARTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAEAVL  418 (419)
T ss_pred             ----c-CCccc-ccCCCCCCCcCCEEEecccccCCCcchHHHHHHHHHHHHHHHh
Confidence                1 13322 3344456788999999999998888899999999999999876

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=100.00  E-value=2e-33  Score=283.61  Aligned_cols=419  Identities=18%  Similarity=0.161  Sum_probs=249.6

Q ss_pred             eEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEec-cCCCeeeecCCceeeCCCCCCchHHHHHhcCCCeeeec
Q 010542           30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTD-YSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTS  108 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~-~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~  108 (507)
                      +|+|||||++||+||++|+++|++|+|+|+++++||++++. ...|+.+|.|+|++.+.  +.++.++++++|+......
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~--~~~~~~~~~~lg~~~~~~~   78 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGC--YANLFRLMKKVGAEDNLLL   78 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCc--hHHHHHHHHHcCCcccccc
Confidence            58999999999999999999999999999999999999996 45799999999999853  4578999999998632211


Q ss_pred             CCCcc-cccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHH-HHHHHHH---h-----hcCCCCC
Q 010542          109 GDNSV-LYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESI-LKETDKV---R-----EEHDEDM  178 (507)
Q Consensus       109 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~-----~~~~~~~  178 (507)
                      ..... +...+.....+........+.+....++......+.    .++....... ......+   .     ....++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~----dklr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (474)
T TIGR02732        79 KEHTHTFVNKGGDIGELDFRFATGAPFNGLKAFFTTSQLKWV----DKLRNALALGTSPIVRGLVDYDGAMKTIRDLDKI  154 (474)
T ss_pred             ccceeEEEcCCCcccccccCCCCCCchhhhHHHhcCCCCCHH----HHHHHHHHhhhhHHHhhccccchhhhhhhhhccc
Confidence            11111 111110000000000000000000011110000111    1111000000 0000000   0     1123568


Q ss_pred             cHHHHHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCc--ccc---ccC-Cccccccc-----hHH
Q 010542          179 SIQRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDK--EEL---LPG-GHGLMVRG-----YLP  246 (507)
Q Consensus       179 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~--~~~---~~~-~~~~~~~G-----~~~  246 (507)
                      ++.++++..          +.++.+++.++.++ .+.+..+++++|+..+..  ..+   ..+ ....+.+|     ++.
T Consensus       155 t~~~~l~~~----------~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~s~~~~~~g~~~~~l~~p  224 (474)
T TIGR02732       155 SFAEWFLSH----------GGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAAKTEASKLRMLKGSPDKYLTKP  224 (474)
T ss_pred             cHHHHHHHc----------CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCcceeeeecCCcchhHHHH
Confidence            888887742          34555788888886 467788888998776531  111   111 22344454     345


Q ss_pred             HHHHHhc-cCCcccCceeEEEEeeC--Cc---EE-EEEcCC---cEEEcCEEEEecCchhhccCcccccCCCcHHHHHHH
Q 010542          247 VINTLAK-GLDIRLGHRVTKITRHY--IG---VK-VTVEGG---KTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAI  316 (507)
Q Consensus       247 l~~~l~~-g~~i~~~~~V~~I~~~~--~~---v~-v~~~~g---~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~  316 (507)
                      +++.|.+ |++|+++++|++|..++  ++   ++ |++.+|   +++.+|+||+|+|++.+.+++....+.  ......+
T Consensus       225 l~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~~~--~~~~~~l  302 (474)
T TIGR02732       225 ILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEWRQ--FEEFDNI  302 (474)
T ss_pred             HHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChhhhc--CHHHhhH
Confidence            7777765 88999999999999864  22   32 445444   468999999999999887754221110  1245667


Q ss_pred             HHcCCcceeEEEEEccCCCCCCCc---------ccee-----ecCCCCceeee-----e-ccccCCCceEEEEEeccchh
Q 010542          317 DDLGVGIENKIIMHFDKVFWPNVE---------FLGV-----VSDTSYGCSYF-----L-NLHKATGHCVLVYMPAGQLA  376 (507)
Q Consensus       317 ~~~~~~~~~~~~l~~~~~~~~~~~---------~~g~-----~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~~~  376 (507)
                      ..+.+.++..+++.|+++.-....         ..+.     +....+.+...     . .+.......++.+++...  
T Consensus       303 ~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--  380 (474)
T TIGR02732       303 YKLDAVPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLTPG--  380 (474)
T ss_pred             hcCCCCCeEEEEEEeccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEEeCh--
Confidence            788888999999999865532210         1111     01111111000     0 011122233344444332  


Q ss_pred             HHHhcCCHHHHHHHHHHHHHHhCCCCCC--CcEEEeccCCCCCCCCcccccCCCCCchHHHHHhcCCCCceEEeeccccC
Q 010542          377 RDIEKMSDEAAANFAFTQLKKILPDASS--PIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSM  454 (507)
Q Consensus       377 ~~~~~~~~ee~~~~~~~~L~~~~p~~~~--~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~  454 (507)
                      ..+.+++++++.+.++++|+++||....  +.+..+.+.....+.      ..||.. ..+|..++|++|||+||||+..
T Consensus       381 ~~~~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~------~~pg~~-~~~P~~~t~~~~l~lAGD~t~~  453 (474)
T TIGR02732       381 DPWMPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYR------EAPGMD-PFRPDQKTPISNFFLAGSYTQQ  453 (474)
T ss_pred             hhhcCCCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCceec------cCCCCc-ccCCCCCCCCCCeEEecccccc
Confidence            3577789999999999999999997543  233334444332111      124442 4456677899999999999999


Q ss_pred             cCCchhhHHHHHHHHHHHHHH
Q 010542          455 SYPGSVHGAFSTGLMAAEDCR  475 (507)
Q Consensus       455 ~~~g~~egA~~SG~~aA~~i~  475 (507)
                      +|+.++|||+.||.+||+.|+
T Consensus       454 ~~pas~egAv~sG~~aA~~i~  474 (474)
T TIGR02732       454 DYIDSMEGATLSGRQAAAAIL  474 (474)
T ss_pred             CchHHHhHHHHHHHHHHHHhC
Confidence            999999999999999999763

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=100.00  E-value=6.7e-32  Score=276.40  Aligned_cols=426  Identities=17%  Similarity=0.138  Sum_probs=239.6

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCeee--
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR--  106 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~--  106 (507)
                      .||+|||||++||+||.+|+++|++|+|+|+++++||+++|+..+|+.+|.|++++.+........++++++|++...  
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~~~~   81 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLEPGGIHARIFRELGIPLPEAK   81 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEEEeecceEEEecCcCCHHHHHHHHcCCCCcccc
Confidence            689999999999999999999999999999999999999999999999999999997644445577889999987321  


Q ss_pred             -ecCCCccccccc-chhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHH---------------
Q 010542          107 -TSGDNSVLYDHD-LESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDK---------------  169 (507)
Q Consensus       107 -~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  169 (507)
                       ........+.++ .......... .+..  .+...+...     .++.....+.+..+......               
T Consensus        82 ~~d~~~~~~~~dg~~~~~~~~d~~-~~~~--~l~~~~p~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (492)
T TIGR02733        82 ILDPACAVDLPDGSEPIPLWHDPD-RWQK--ERERQFPGS-----ERFWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQL  153 (492)
T ss_pred             cCCCCcEEEECCCceEeeeecCHH-HHHH--HHHHHCCCh-----HHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Confidence             111111111111 0000000000 0000  000000000     01111111111100000000               


Q ss_pred             ---H-----hhcCCCCCcHHHHHHHHhccChhHHhhhhHHHHHHHHHHhhhc-cccCCcccccccccC---ccccccCCc
Q 010542          170 ---V-----REEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEG-WFAADAETISLKSWD---KEELLPGGH  237 (507)
Q Consensus       170 ---~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~---~~~~~~~~~  237 (507)
                         +     ........++.++++..         ..+.++.++.++..... +.+.++.+.+.....   .......+.
T Consensus       154 ~~~~~~~~~~~~~~~~~s~~~~l~~~---------~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  224 (492)
T TIGR02733       154 VSALRPDTLLTGPLSLLTVADLLRLC---------GLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMAQAPHGL  224 (492)
T ss_pred             HHhcChhhhhhhhhhhhhHHHHHHHh---------CCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhccccCCCc
Confidence               0     00000112222322211         01344455555554333 333334444433321   111123456


Q ss_pred             cccccchHHHHHHHhc-----cCCcccCceeEEEEeeCCcEE-EEEcCC-----cEEEcCEEEEecCchhhccCcccccC
Q 010542          238 GLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGVK-VTVEGG-----KTFVADAVVVAVPLGVLKARTIKFEP  306 (507)
Q Consensus       238 ~~~~~G~~~l~~~l~~-----g~~i~~~~~V~~I~~~~~~v~-v~~~~g-----~~~~ad~VI~a~p~~~~~~l~~~~~p  306 (507)
                      .+++||++.|+++|.+     |++|+++++|++|..+++++. +.+.+|     +++.||+||+|+|+..+..++ . .+
T Consensus       225 ~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll-~-~~  302 (492)
T TIGR02733       225 WHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELL-G-PL  302 (492)
T ss_pred             eeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhc-C-cc
Confidence            6799999999999965     789999999999999877532 434343     578999999999998877643 2 35


Q ss_pred             CCcHHHHHHHHHcCCcce-eEEEEEccCCCCC--CCccceeecCC-CCceeee---eccccCCCceEEEEEeccch----
Q 010542          307 RLPDWKEAAIDDLGVGIE-NKIIMHFDKVFWP--NVEFLGVVSDT-SYGCSYF---LNLHKATGHCVLVYMPAGQL----  375 (507)
Q Consensus       307 ~l~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~--~~~~~g~~~~~-~~~~~~~---~~~~~~~~~~~l~~~~~~~~----  375 (507)
                      .+++...+.+..+++.+. ..+++.++....+  .......+... .......   ++...|+|+..+++......    
T Consensus       303 ~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~~~~  382 (492)
T TIGR02733       303 GLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDHQGSLFVSISQEGDGRAPQGEATLIASSFTDTNDWS  382 (492)
T ss_pred             cCCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeeccCCCceEEEEeCCccccCCCCCceEEEEEcCCCHHHHc
Confidence            677777777888887654 3677888763211  11111111111 1111111   11234667777654433221    


Q ss_pred             ---hHHHhcCCHHHHHHHHHHHHHHhCCCCCCCcEEEeccCCC----C-CCCCcc-cccCC-CCCchHHHHHhcCCCCce
Q 010542          376 ---ARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGT----D-ANSLGS-YSYDT-VGKSHDLYERLRIPVDNL  445 (507)
Q Consensus       376 ---~~~~~~~~~ee~~~~~~~~L~~~~p~~~~~~~~~~~~w~~----~-~~~~g~-~~~~~-~~~~~~~~~~~~~~~~~l  445 (507)
                         ..+|.+ .++++.+.+++.|++.+|++.+.+.......+.    . ....|+ |.... ..+....++..+++++||
T Consensus       383 ~~~~~~y~~-~k~~~~~~il~~le~~~p~l~~~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~gL  461 (492)
T TIGR02733       383 SLDEEDYTA-KKKQYTQTIIERLGHYFDLLEENWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKGL  461 (492)
T ss_pred             CCCHHHHHH-HHHHHHHHHHHHHHHHCCCccccEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCCe
Confidence               122333 256688999999999999987765544332221    1 111221 11111 222212222336899999


Q ss_pred             EEeeccccCcCCchhhHHHHHHHHHHHHHHH
Q 010542          446 FFAGEATSMSYPGSVHGAFSTGLMAAEDCRM  476 (507)
Q Consensus       446 ~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~  476 (507)
                      |+||+++.++  +++.|++.||+.+|+.|++
T Consensus       462 yl~G~~~~pG--~Gv~g~~~sg~~~a~~i~~  490 (492)
T TIGR02733       462 WLCGDSIHPG--EGTAGVSYSALMVVRQILA  490 (492)
T ss_pred             EEecCccCCC--CcHHHHHHHHHHHHHHHhh
Confidence            9999998774  5889999999999999875

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=100.00  E-value=2.3e-32  Score=238.16  Aligned_cols=325  Identities=20%  Similarity=0.178  Sum_probs=225.5

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCeeee
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRT  107 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~  107 (507)
                      +.+|+|||+||+||+||+.|+.+|.+|+||||+.-+|||+.|.+..+..||.|+.+|..  .+..+.++++.+.-+    
T Consensus         1 ~~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~--~~~~F~~~Ve~~~~~----   74 (331)
T COG3380           1 MPSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKP--RDELFLRAVEALRDD----   74 (331)
T ss_pred             CCcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecC--CchHHHHHHHHHHhC----
Confidence            35799999999999999999999999999999999999999999999999999999962  333333333322111    


Q ss_pred             cCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHH
Q 010542          108 SGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIV  187 (507)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (507)
                                                                                                      
T Consensus        75 --------------------------------------------------------------------------------   74 (331)
T COG3380          75 --------------------------------------------------------------------------------   74 (331)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccChhHHhhhhHHHHHHHHHHhhhccccCCcccccccccCccccccCCccccccchHHHHHHHhccCCcccCceeEEEE
Q 010542          188 FDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKIT  267 (507)
Q Consensus       188 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~g~~i~~~~~V~~I~  267 (507)
                                ++-+....       ..|...-...+ ...      ....+....||.+|.+.|+..++|.++++|++|.
T Consensus        75 ----------glV~~W~~-------~~~~~~~~~~~-~~~------d~~pyvg~pgmsalak~LAtdL~V~~~~rVt~v~  130 (331)
T COG3380          75 ----------GLVDVWTP-------AVWTFTGDGSP-PRG------DEDPYVGEPGMSALAKFLATDLTVVLETRVTEVA  130 (331)
T ss_pred             ----------Cceeeccc-------cccccccCCCC-CCC------CCCccccCcchHHHHHHHhccchhhhhhhhhhhe
Confidence                      00000000       00000000000 000      0011345679999999999999999999999999


Q ss_pred             eeCCcEEEEEcCCc-EEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcceeEEEEEccCCCCCCCccceeec
Q 010542          268 RHYIGVKVTVEGGK-TFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVS  346 (507)
Q Consensus       268 ~~~~~v~v~~~~g~-~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~  346 (507)
                      ..++.|++++++|. ...+|.||+|+|.+.+..|+-.....+|..++..+..+.|.+...+.+.|..+.-.  ++.|...
T Consensus       131 ~~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~~--P~~G~~v  208 (331)
T COG3380         131 RTDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQPLDR--PWPGNFV  208 (331)
T ss_pred             ecCCeeEEEecCCCcccccceEEEecCCCcchhhcCcccccchHHHHHhhccceehhHHHHHhcCCccCCC--CCCCccc
Confidence            99999999997654 67999999999998877654333456888899999999999999889999865421  1223333


Q ss_pred             CCCCceeeeecccc---CCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhCC-CCCCCcEEEeccCCCCCCCCcc
Q 010542          347 DTSYGCSYFLNLHK---ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP-DASSPIQYLVSHWGTDANSLGS  422 (507)
Q Consensus       347 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p-~~~~~~~~~~~~w~~~~~~~g~  422 (507)
                      +.....+.-.+..+   .+....+++....++++.+.+.++|..++.+....+.+.+ .+++|.....++|..   +.+.
T Consensus       209 dg~~laWla~d~sK~g~~p~~~~~vvqasp~wSr~h~~~~~e~~i~~l~aA~~~~~~~~~~~p~~s~~H~WrY---A~P~  285 (331)
T COG3380         209 DGHPLAWLARDASKKGHVPDGEIWVVQASPDWSREHLDHPAEQVIVALRAAAQELDGDRLPEPDWSDAHRWRY---AIPN  285 (331)
T ss_pred             CCCeeeeeeccccCCCCCCcCceEEEEeCchHHHHhhcCCHHHHHHHHHHhhhhccCCCCCcchHHHhhcccc---cccc
Confidence            32222222222111   1223477888889999999999999988777777777775 577787777888953   2111


Q ss_pred             cccCCCCCchHHHHHhcCCCCceEEeeccccCcCCchhhHHHHHHHHHHHHHHHH
Q 010542          423 YSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR  477 (507)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~  477 (507)
                      -....+       .....+-.+||+|||+++.   |.+|||.+||..+|++|++.
T Consensus       286 ~~~~~~-------~L~ad~~~~l~~cGDwc~G---grVEgA~LSGlAaA~~i~~~  330 (331)
T COG3380         286 DAVAGP-------PLDADRELPLYACGDWCAG---GRVEGAVLSGLAAADHILNG  330 (331)
T ss_pred             ccccCC-------ccccCCCCceeeecccccC---cchhHHHhccHHHHHHHHhc
Confidence            110000       0011344699999999886   89999999999999999874

>TIGR02730 carot_isom carotene isomerase

Probab=100.00  E-value=1.2e-30  Score=266.48  Aligned_cols=427  Identities=18%  Similarity=0.165  Sum_probs=232.2

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCC---CCchHHHHHhcCCCee
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQ---ENPLAPVISRLGLPLY  105 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~---~~~~~~l~~~lg~~~~  105 (507)
                      +||+|||||++||+||.+|+++|++|+||||++.+||+++++..+|+.+|.|++++.+...   .+.+.+++..++....
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKLE   80 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCEEEEecchhheecCCcccccHHHHHHHHcCCccc
Confidence            6899999999999999999999999999999999999999999999999999999865432   1234566776665432


Q ss_pred             eecCCCc--ccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHH---HHHHHHHHHHHHHHHHhh-------c
Q 010542          106 RTSGDNS--VLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVT---KVGEAFESILKETDKVRE-------E  173 (507)
Q Consensus       106 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-------~  173 (507)
                      .......  +.+.++..                 . .+..+...+...+..   ...+.+.++.+.+.....       .
T Consensus        81 ~~~~~~~~~~~~~~g~~-----------------~-~~~~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (493)
T TIGR02730        81 TIPDPVQIHYHLPNGLN-----------------V-KVHREYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNSMELL  142 (493)
T ss_pred             ccCCCccEEEECCCCee-----------------E-eeecCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            1111111  11111100                 0 000000000000000   001112222222211100       0


Q ss_pred             CCCC-CcHH-HHHH---------HHhccC-hhHHhhhhHHHHHHHHHHhhhccccCC-cccccccccC--ccccccCCcc
Q 010542          174 HDED-MSIQ-RAIS---------IVFDRR-PELRLEGLAHKVLQWYLCRMEGWFAAD-AETISLKSWD--KEELLPGGHG  238 (507)
Q Consensus       174 ~~~~-~~~~-~~~~---------~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~--~~~~~~~~~~  238 (507)
                      .... ..+. .++.         .+.... .......+.++.++.++......++.. ....+.....  ......++..
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~g~~  222 (493)
T TIGR02730       143 SLEEPRYLFRVFFKHPLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSVVPADQTPMINAGMVFSDRHYGGIN  222 (493)
T ss_pred             cccChHHHHHHHhhchhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccCCCcccchhhhHHHhhcccccceEe
Confidence            0000 0000 0000         000000 001112233444444444333333322 2333222111  1112345677


Q ss_pred             ccccchHHHHHHHhc-----cCCcccCceeEEEEeeCCcE-EEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHH
Q 010542          239 LMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGV-KVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWK  312 (507)
Q Consensus       239 ~~~~G~~~l~~~l~~-----g~~i~~~~~V~~I~~~~~~v-~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~  312 (507)
                      ++.+|++.++++|.+     |++|+++++|++|..+++++ .|.+.+|+++.+|+||+|+++..+...++. ...+++..
T Consensus       223 ~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~-~~~~~~~~  301 (493)
T TIGR02730       223 YPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLK-AENLPKKE  301 (493)
T ss_pred             cCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCC-ccccchhh
Confidence            899999999998865     88999999999999887665 478888988999999999987554332221 12244444


Q ss_pred             HHHHHHcCCc-ceeEEEEEccCCCCCCCcc-ceeecC------CCCcee--e----eeccccCCCceEEEEEeccchhHH
Q 010542          313 EAAIDDLGVG-IENKIIMHFDKVFWPNVEF-LGVVSD------TSYGCS--Y----FLNLHKATGHCVLVYMPAGQLARD  378 (507)
Q Consensus       313 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~-~g~~~~------~~~~~~--~----~~~~~~~~~~~~l~~~~~~~~~~~  378 (507)
                      .+.+..+++. ...++++..+....++... .-.+..      ......  .    .++..+|+|+.++.+++.... ..
T Consensus       302 ~~~~~~~~~s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~-~~  380 (493)
T TIGR02730       302 KNWQRNYVKSPSFLSLHLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSM-ED  380 (493)
T ss_pred             HHHHhhccCCCceEEEEEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCCh-hh
Confidence            4444555544 4567788887644332100 001100      001111  1    112234667777766654222 22


Q ss_pred             Hh-------cCCHHHHHHHHHHHHHHhCCCCCCCcEEEeccCCCC-----CCCCcccccCCCCCchHHH--HHhcCCCCc
Q 010542          379 IE-------KMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTD-----ANSLGSYSYDTVGKSHDLY--ERLRIPVDN  444 (507)
Q Consensus       379 ~~-------~~~~ee~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~-----~~~~g~~~~~~~~~~~~~~--~~~~~~~~~  444 (507)
                      |.       +..++++.+.+++.|++++|++.+.+.+.....+.+     ....|.|............  +..+++++|
T Consensus       381 w~~~~~~~y~~~k~~~~~~il~~l~~~~p~l~~~I~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~g  460 (493)
T TIGR02730       381 WQGLSPKDYEAKKEADAERIIDRLEKIFPGLDSAIDYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPG  460 (493)
T ss_pred             ccCCCcHHHHHHHHHHHHHHHHHHHHHCCChhhcEEEEEeeCchhHHHHhCCCCcccCCcccccccccccCCCCCCCCCC
Confidence            21       112567899999999999999877655443322211     1112333211000000111  235789999


Q ss_pred             eEEeeccccCcCCchhhHHHHHHHHHHHHHHHH
Q 010542          445 LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR  477 (507)
Q Consensus       445 l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~  477 (507)
                      ||+||+++.++  +++.||+.||+.||+.|++.
T Consensus       461 Lyl~G~~~~pG--~Gv~g~~~sG~~~a~~i~~~  491 (493)
T TIGR02730       461 LYCVGDSCFPG--QGLNAVAFSGFACAHRVAAD  491 (493)
T ss_pred             eEEecCcCCCC--CCHHHHHHHHHHHHHHHHhh
Confidence            99999998774  58999999999999998764

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>TIGR02734 crtI_fam phytoene desaturase

Probab=100.00  E-value=2.4e-31  Score=273.20  Aligned_cols=421  Identities=17%  Similarity=0.143  Sum_probs=230.9

Q ss_pred             EEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCe------
Q 010542           31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL------  104 (507)
Q Consensus        31 v~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~------  104 (507)
                      |+|||||++||+||.+|+++|++|+|+|+++++||+++|+..+|+.+|.|++++..   ...+.++++++|+++      
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~---~~~~~~l~~~lg~~l~~~l~~   77 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITM---PEALEELFALAGRDLADYVEL   77 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecCCeEEecCCeEEcc---ccHHHHHHHHcCCChhheEEE
Confidence            69999999999999999999999999999999999999999999999999999852   245678888888542      


Q ss_pred             eeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHH---HHHHHHHHHHHHHHHHhh----c--CC
Q 010542          105 YRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVT---KVGEAFESILKETDKVRE----E--HD  175 (507)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~----~--~~  175 (507)
                      .+......+.+.++...                  .+..+...+...+..   ...+.+.++++.+.....    .  ..
T Consensus        78 ~~~~~~~~~~~~~g~~~------------------~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (502)
T TIGR02734        78 VPLDPFYRLCWEDGSQL------------------DVDNDQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYV  139 (502)
T ss_pred             EECCCceEEECCCCCEE------------------EecCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            11111111112111000                  000000000000000   001112222221111110    0  00


Q ss_pred             CCCcHHHHHHH----HhccC-----hhHHhhhhHHHHHHHHHHhhhccccCCcccccccccC-ccccccCCccccccchH
Q 010542          176 EDMSIQRAISI----VFDRR-----PELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWD-KEELLPGGHGLMVRGYL  245 (507)
Q Consensus       176 ~~~~~~~~~~~----~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~G~~  245 (507)
                      ...+..+.+..    .+...     .......+.++.++.++.....+++.++...+..... ......++..++.+|++
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~g~~p~~~~~~~~l~~~~~~~~g~~~~~gG~~  219 (502)
T TIGR02734       140 PFLSPRDLLRADLPQLLALLAWRSLYSKVARFFSDERLRQAFSFHALFLGGNPFRTPSIYALISALEREWGVWFPRGGTG  219 (502)
T ss_pred             CCCCHHHHHhHhhHhhhhccCcCCHHHHHHhhcCCHHHHHHhcccceeeccCcccchHHHHHHHHHHhhceEEEcCCCHH
Confidence            01111111110    00000     0001122344445555443344555665554433221 11223456668899999


Q ss_pred             HHHHHHhc-----cCCcccCceeEEEEeeCCc-EEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHc
Q 010542          246 PVINTLAK-----GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDL  319 (507)
Q Consensus       246 ~l~~~l~~-----g~~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~  319 (507)
                      .++++|.+     |++|+++++|++|..++++ +.|++.+|+++.||+||+|+++..+...++. ....+....+.+..+
T Consensus       220 ~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~-~~~~~~~~~~~~~~~  298 (502)
T TIGR02734       220 ALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLLP-NHPRRRYPAARLSRK  298 (502)
T ss_pred             HHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcC-ccccccccccccccC
Confidence            99999865     8899999999999988776 4588888888999999999998665432321 111222333444555


Q ss_pred             CCc-ceeEEEEEcc---CCCCCCCcc-c-----------------eeecCCCCceeee----eccccCCCceEEEEEecc
Q 010542          320 GVG-IENKIIMHFD---KVFWPNVEF-L-----------------GVVSDTSYGCSYF----LNLHKATGHCVLVYMPAG  373 (507)
Q Consensus       320 ~~~-~~~~~~l~~~---~~~~~~~~~-~-----------------g~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~  373 (507)
                      .+. ...++++.++   .. ++.... .                 |.+..........    ++..+|+|+..+.+++..
T Consensus       299 ~~s~s~~~~~lgl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~  377 (502)
T TIGR02734       299 RPSPSLFVLYFGLLGVDGH-WPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPV  377 (502)
T ss_pred             CcCCeeeEEEEeeccccCc-CCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeC
Confidence            533 4456677776   23 221100 0                 0011111111111    122346676666544432


Q ss_pred             ch----hHHHhcCCHHHHHHHHHHHHHHh-CCCCCCCcEEEeccC----CCC-CCCCcc-cccC-CCCCchHHHHH-hcC
Q 010542          374 QL----ARDIEKMSDEAAANFAFTQLKKI-LPDASSPIQYLVSHW----GTD-ANSLGS-YSYD-TVGKSHDLYER-LRI  440 (507)
Q Consensus       374 ~~----~~~~~~~~~ee~~~~~~~~L~~~-~p~~~~~~~~~~~~w----~~~-~~~~g~-~~~~-~~~~~~~~~~~-~~~  440 (507)
                      ..    ..+|.+ .++++.+.+++.|++. +|++.+.+.......    ... ....|+ |... ...+....++. ..+
T Consensus       378 ~~~~~~~~~~~~-~k~~~~~~il~~l~~~~~p~l~~~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t  456 (502)
T TIGR02734       378 PHLGTADVDWSV-EGPRYRDRILAYLEERAIPGLRDRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDR  456 (502)
T ss_pred             CCCCCCCCCcHH-HHHHHHHHHHHHHHHhcCCChhHheEEEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCCCC
Confidence            21    112332 3677999999999998 999877654433211    110 111121 1111 11111122232 357


Q ss_pred             CCCceEEeeccccCcCCchhhHHHHHHHHHHHHHHHH
Q 010542          441 PVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR  477 (507)
Q Consensus       441 ~~~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~  477 (507)
                      +++|||+||+++.++  +++.|++.||+.||+.|++.
T Consensus       457 ~i~gLyl~G~~~~pG--~Gv~g~~~sg~~~a~~il~~  491 (502)
T TIGR02734       457 KIDNLYLVGAGTHPG--AGVPGVLGSAKATAKLMLGD  491 (502)
T ss_pred             CCCCEEEeCCCCCCC--CCHHHHHHHHHHHHHHHHhh
Confidence            899999999998774  58999999999999998875

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=99.97  E-value=1.1e-28  Score=222.35  Aligned_cols=287  Identities=18%  Similarity=0.164  Sum_probs=211.0

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEecc----CCCeeeecCCceeeCCCCCCchHHHHHhcC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY----SFGFPVDLGASWLHGVCQENPLAPVISRLG  101 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~----~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg  101 (507)
                      ...++|+|||+|++||+|||.|++. ++|++||+++++||+++|..    ..|+.+|.|.+.++.. .++++.+|++++|
T Consensus         6 ~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~-tYpnl~~Lf~~iG   83 (447)
T COG2907           6 HPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNER-TYPNLTRLFKTIG   83 (447)
T ss_pred             CCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCC-CcchHHHHHHHcC
Confidence            4678999999999999999999987 89999999999999999984    3477899999888742 5778999999999


Q ss_pred             CCeeeecCCCcccccc-cchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcH
Q 010542          102 LPLYRTSGDNSVLYDH-DLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSI  180 (507)
Q Consensus       102 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (507)
                      ++.....++..+-.+. ++++          ........++....+.+.+.+..++.+.+.-........+.....+.++
T Consensus        84 v~t~as~Msf~v~~d~gglEy----------~g~tgl~~L~aqk~n~l~pRf~~mlaeiLrf~r~~~~~~d~~~~~~~tl  153 (447)
T COG2907          84 VDTKASFMSFSVSLDMGGLEY----------SGLTGLAGLLAQKRNLLRPRFPCMLAEILRFYRSDLAPSDNAGQGDTTL  153 (447)
T ss_pred             CCCcccceeEEEEecCCceee----------ccCCCccchhhccccccchhHHHHHHHHHHHhhhhccchhhhcCCCccH
Confidence            9977776666655543 2222          1111123466666667777777766655433322222333445567888


Q ss_pred             HHHHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCc-----------cccccCCccccccchHHHH
Q 010542          181 QRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDK-----------EELLPGGHGLMVRGYLPVI  248 (507)
Q Consensus       181 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~-----------~~~~~~~~~~~~~G~~~l~  248 (507)
                      .+|+.          ..+++..+.+.++.|+ .+.++.+...++......           .......+.++.||....+
T Consensus       154 ~~~L~----------~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~nhGll~l~~rp~wrtV~ggS~~yv  223 (447)
T COG2907         154 AQYLK----------QRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFTDNHGLLYLPKRPTWRTVAGGSRAYV  223 (447)
T ss_pred             HHHHH----------hcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHhccCceecCCCCceeEcccchHHHH
Confidence            88865          4689999999998887 456666655555333210           1111223557889999999


Q ss_pred             HHHhccCC--cccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcceeE
Q 010542          249 NTLAKGLD--IRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENK  326 (507)
Q Consensus       249 ~~l~~g~~--i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~  326 (507)
                      +.|.+++.  |.++++|.+|..--+++.++..+|++.++|.||+|+.+.....++    ++-+++.++.+..+.| +.+.
T Consensus       224 q~laa~~~~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl~mL----~e~sp~e~qll~a~~Y-s~n~  298 (447)
T COG2907         224 QRLAADIRGRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALALL----DEPSPEERQLLGALRY-SANT  298 (447)
T ss_pred             HHHhccccceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChHHHHHhc----CCCCHHHHHHHHhhhh-hhce
Confidence            99999874  999999999999999999988899999999999999988765443    3345666779999999 4555


Q ss_pred             EEEEccCCCCCCC
Q 010542          327 IIMHFDKVFWPNV  339 (507)
Q Consensus       327 ~~l~~~~~~~~~~  339 (507)
                      ..++.|.+++|..
T Consensus       299 aVlhtd~~lmPrR  311 (447)
T COG2907         299 AVLHTDASLMPRR  311 (447)
T ss_pred             eEEeecccccccc
Confidence            6788888777754

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=99.96  E-value=1.2e-27  Score=221.85  Aligned_cols=401  Identities=20%  Similarity=0.228  Sum_probs=259.3

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCe--EEEEecCCCCCceeEe-ccCCCeeeecCCceeeCCCC-CCchHHHHHhcC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFK--VVLLESRDRVGGRVHT-DYSFGFPVDLGASWLHGVCQ-ENPLAPVISRLG  101 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~--V~vlE~~~~~GG~~~s-~~~~g~~~d~G~~~~~~~~~-~~~~~~l~~~lg  101 (507)
                      ...++|+|||||++||++||+|++.+.+  |+|+|+.+|+||+++| ...+|+.||.|+..+.+... .-.+.+++.++|
T Consensus         9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLG   88 (491)
T KOG1276|consen    9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLG   88 (491)
T ss_pred             eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcC
Confidence            4679999999999999999999999764  6679999999999999 55569999999998875432 235789999999


Q ss_pred             CCeeee--cC-----CCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHH--------HHHHHHHHHHHH
Q 010542          102 LPLYRT--SG-----DNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVT--------KVGEAFESILKE  166 (507)
Q Consensus       102 ~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~  166 (507)
                      ++....  ..     .+.+++..+                         ....+|..+..        .....+..++..
T Consensus        89 l~~e~~~i~~~~paaknr~l~~~~-------------------------~L~~vP~sl~~s~~~~l~p~~k~L~~a~l~e  143 (491)
T KOG1276|consen   89 LEDELQPIDISHPAAKNRFLYVPG-------------------------KLPTVPSSLVGSLKFSLQPFGKPLLEAFLRE  143 (491)
T ss_pred             ccceeeecCCCChhhhheeeccCc-------------------------ccccCCcccccccccccCcccchhHHHHHhh
Confidence            963321  11     111222211                         11111111110        112223344443


Q ss_pred             HHHHh-hcCCCCCcHHHHHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCcc-cc---ccC-----
Q 010542          167 TDKVR-EEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKE-EL---LPG-----  235 (507)
Q Consensus       167 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~-~~---~~~-----  235 (507)
                      ..+-. .....++|+++|++           ++|++++.+.++.++ ++.|+.+++.+|++..... +.   ..|     
T Consensus       144 ~fr~~~~~~~~dESV~sF~~-----------RrfG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G  212 (491)
T KOG1276|consen  144 LFRKKVSDPSADESVESFAR-----------RRFGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILG  212 (491)
T ss_pred             hccccCCCCCccccHHHHHH-----------HhhhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHH
Confidence            33322 34567889998877           568899999999997 6799999999998854310 00   000     


Q ss_pred             ---------------------------CccccccchHHHHHHHhcc-----CCcccCceeEEEEee-CCcEEEEEcC--C
Q 010542          236 ---------------------------GHGLMVRGYLPVINTLAKG-----LDIRLGHRVTKITRH-YIGVKVTVEG--G  280 (507)
Q Consensus       236 ---------------------------~~~~~~~G~~~l~~~l~~g-----~~i~~~~~V~~I~~~-~~~v~v~~~~--g  280 (507)
                                                 ..+..++|++.+.+++.++     +.|.+.-++..+... .++|.+++.+  +
T Consensus       213 ~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~  292 (491)
T KOG1276|consen  213 TIRAKFARKRTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSG  292 (491)
T ss_pred             HHHHHHHhhcCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCC
Confidence                                       0224678899999999774     357778888888765 4557766554  4


Q ss_pred             c-EEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcceeEEEEEccCC-CCCCCccceeecCC--CCc----e
Q 010542          281 K-TFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKV-FWPNVEFLGVVSDT--SYG----C  352 (507)
Q Consensus       281 ~-~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~g~~~~~--~~~----~  352 (507)
                      . .+..+++.+|.|+..+..++    +.+.+....++..++|.++..|.+.|.+. ...+...+|++.+.  ...    -
T Consensus       293 ~~~~~~~~~~~t~~~~k~a~ll----~~~~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG  368 (491)
T KOG1276|consen  293 TQRVVVSYDAATLPAVKLAKLL----RGLQNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLG  368 (491)
T ss_pred             ceeeeccccccccchHHhhhhc----cccchhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeE
Confidence            3 45566677799988877653    44556667889999999999999999763 32233445776652  111    1


Q ss_pred             eeeecccc--CCCceEEEEEeccchhHH--HhcCCHHHHHHHHHHHHHHhCCCCCCCcEEEeccCCCCCCCCcccccCCC
Q 010542          353 SYFLNLHK--ATGHCVLVYMPAGQLARD--IEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTV  428 (507)
Q Consensus       353 ~~~~~~~~--~~~~~~l~~~~~~~~~~~--~~~~~~ee~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~  428 (507)
                      ..|+....  ..+...+++++.+.....  ....|.||+++.+.++|+++++.-.+|....++.|..   +.+.|   ..
T Consensus       369 ~ifdS~~Fp~~~~s~~vtvm~gg~~~~n~~~~~~S~ee~~~~v~~alq~~Lgi~~~P~~~~v~l~~~---ciPqy---~v  442 (491)
T KOG1276|consen  369 TIFDSMLFPDRSPSPKVTVMMGGGGSTNTSLAVPSPEELVNAVTSALQKMLGISNKPVSVNVHLWKN---CIPQY---TV  442 (491)
T ss_pred             EEeecccCCCCCCCceEEEEecccccccCcCCCCCHHHHHHHHHHHHHHHhCCCCCcccccceehhh---cccce---ec
Confidence            22332211  122335666655544333  2345899999999999999997655666555566642   12222   34


Q ss_pred             CCc--hHHHHHhcCCC--CceEEeeccccCcCCchhhHHHHHHHHHHHHHH
Q 010542          429 GKS--HDLYERLRIPV--DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR  475 (507)
Q Consensus       429 ~~~--~~~~~~~~~~~--~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~  475 (507)
                      |+.  .+....+.+..  .+|+++|.++..   -.+..++.||+++|.++.
T Consensus       443 Gh~~~le~a~~~l~~~~g~~l~l~G~~y~G---v~vgdcI~sg~~~A~~v~  490 (491)
T KOG1276|consen  443 GHDDVLEAAKSMLTDSPGLGLFLGGNHYGG---VSVGDCIESGRKTAVEVI  490 (491)
T ss_pred             chHHHHHHHHHHHHhCCCCceEeeccccCC---CChhHHHHhhHHHHHhhc
Confidence            442  12222233333  599999999875   578889999999998764

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.95  E-value=4.1e-27  Score=238.36  Aligned_cols=248  Identities=27%  Similarity=0.268  Sum_probs=142.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcC-CCee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLG-LPLY  105 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg-~~~~  105 (507)
                      +.+||||||||++||+||.+|+++|++|+||||++++||+++|....|+.||+|++++...    ....++++++ ++..
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G~~~~~~~----~~~~~~~~l~~l~~~   77 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLMP----DPGPLFRELGNLDAD   77 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEeccCcceeecC----chHHHHHHhccCccc
Confidence            5799999999999999999999999999999999999999999999999999999877533    2336666666 4422


Q ss_pred             -----eecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHH---HHHHHHHHHHHHHHHH----Hhhc
Q 010542          106 -----RTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELV---TKVGEAFESILKETDK----VREE  173 (507)
Q Consensus       106 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~  173 (507)
                           .........+.++..                  .....+.......+.   ....+.+.+++....+    ....
T Consensus        78 ~l~~~~~~~~~~~~~~~g~~------------------~~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  139 (487)
T COG1233          78 GLDLLPPDPAYRVFLPDGDA------------------IDVYTDLEATAELLESLEPGDGEALARYLRLLARLYELLAAL  139 (487)
T ss_pred             ceeeeccCCceeeecCCCCE------------------EEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhh
Confidence                 111111111111100                  000000000000000   0001111222211111    1111


Q ss_pred             CC----C-----CCcHHHHHHH---HhccChhHHhhhhHHHHHHHHHHhhhccccCCccccc-ccccCccccccCCcccc
Q 010542          174 HD----E-----DMSIQRAISI---VFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETIS-LKSWDKEELLPGGHGLM  240 (507)
Q Consensus       174 ~~----~-----~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~  240 (507)
                      ..    .     ......++..   .+..........|..+.++..+.....+.+..+...+ +..+.......++..++
T Consensus       140 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~~~~p~~~~a~~~~~~~~~~~~G~~~p  219 (487)
T COG1233         140 LLAPPRSELLLVPDTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYGGAPPSTPPALYLLLSHLGLSGGVFYP  219 (487)
T ss_pred             cCCCchhhhhhccccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhcccCCeeee
Confidence            00    0     1111122111   1111111111225555555444432111113333333 22222344456778899


Q ss_pred             ccchHHHHHHHhc-----cCCcccCceeEEEEeeCCc-EEEEEcCCcEEEcCEEEEecCchh
Q 010542          241 VRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       241 ~~G~~~l~~~l~~-----g~~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      +|||+.++++|.+     |++|+++++|++|..++++ +++++.+|+.+.+|.||+++.+..
T Consensus       220 ~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~~~  281 (487)
T COG1233         220 RGGMGALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADPAL  281 (487)
T ss_pred             eCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCchhh
Confidence            9999999999976     9999999999999998875 668888887889999999998843

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=99.89  E-value=1.3e-22  Score=196.32  Aligned_cols=437  Identities=18%  Similarity=0.095  Sum_probs=222.8

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccC-CCeeeecCCceeeCCCCCCchHHHHHhcCCCeeee
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS-FGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRT  107 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~  107 (507)
                      ++|+|+|||+|||+||++|+++|++|+|+|+++++||.+.|.+. +|.+.|+|.|.|.++  +.++++++++++......
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~--Y~n~~~ll~~~~~~~~~~   78 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGC--YYNLLTLLKELPIEDRLQ   78 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechh--HHHHHHHhhhCCchheee
Confidence            47999999999999999999999999999999999999999664 689999999999854  568999999998863211


Q ss_pred             cCCCccccc--ccchh--hhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHH-H-HHHhhcCCCCCcHH
Q 010542          108 SGDNSVLYD--HDLES--RVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKE-T-DKVREEHDEDMSIQ  181 (507)
Q Consensus       108 ~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~  181 (507)
                      .......+.  .+...  .-+..+. -+.+.+.....+.  ...++..   .......++... + ........++.++.
T Consensus        79 ~~~~~~~~~~~~~~~g~~~~~~~~~-~p~p~~~~~~~l~--~~~~~~~---~~~~~~~~l~~~~~g~~~~~~eld~~s~~  152 (485)
T COG3349          79 LREHTKTFVGSGTRPGAIGRFARPD-APQPTNGLKAFLR--LPQLPRR---EKIRFVLRLGDAPIGADRSLRELDKISFA  152 (485)
T ss_pred             hHhhhhhhcccCCCCCcccccccCC-CCCcchhhhhhhh--ccccCHH---HHhHHhhccccccchhHHHHHHHhcccHH
Confidence            111111110  00000  0000000 0000000000000  0011111   001111111111 1 11112345667888


Q ss_pred             HHHHHHhccChhHHhhhhHHHHHHHHHHhhh-ccccCCcccccccccCc----ccccc-CC--ccccccc-----hHHHH
Q 010542          182 RAISIVFDRRPELRLEGLAHKVLQWYLCRME-GWFAADAETISLKSWDK----EELLP-GG--HGLMVRG-----YLPVI  248 (507)
Q Consensus       182 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~----~~~~~-~~--~~~~~~G-----~~~l~  248 (507)
                      +|++..-          .........+.++. ......++..|...+..    ..... ++  ...+.++     .+.+.
T Consensus       153 d~l~~~g----------~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~  222 (485)
T COG3349         153 DWLKEKG----------AREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWT  222 (485)
T ss_pred             HHHHHhC----------CCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhh
Confidence            8877532          22222222233321 11223334444433220    00000 00  1112222     23445


Q ss_pred             HHHh-ccCCcccCceeEEEEeeCC-----cEEEEEcCCcEE---EcCEEEEecCchhhccCcccccCCCc-HHHHHHHHH
Q 010542          249 NTLA-KGLDIRLGHRVTKITRHYI-----GVKVTVEGGKTF---VADAVVVAVPLGVLKARTIKFEPRLP-DWKEAAIDD  318 (507)
Q Consensus       249 ~~l~-~g~~i~~~~~V~~I~~~~~-----~v~v~~~~g~~~---~ad~VI~a~p~~~~~~l~~~~~p~l~-~~~~~~~~~  318 (507)
                      +.+- .|.+++.+.+|+.|.....     .+.+... +...   .++.|+.+.....+...+.   .+.+ ......+..
T Consensus       223 ~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~~~~~~~p---s~W~~~~~f~~ly~  298 (485)
T COG3349         223 EYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQRFKRDLP---SEWPKWSNFDGLYG  298 (485)
T ss_pred             hhccccCceeeccceeeeeeccccccccceEeeeec-CcceEeeehhhhhcccccchHhhcCc---cccccccccccccc
Confidence            5555 3889999999999987652     2233333 4333   4445555555544433211   1111 222344566


Q ss_pred             cCCcceeEEEEEccCCCCCCCccc--eeec-----CCCCceeeeec------cccCCCceEEEEEeccchhHHHhcCCHH
Q 010542          319 LGVGIENKIIMHFDKVFWPNVEFL--GVVS-----DTSYGCSYFLN------LHKATGHCVLVYMPAGQLARDIEKMSDE  385 (507)
Q Consensus       319 ~~~~~~~~~~l~~~~~~~~~~~~~--g~~~-----~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~e  385 (507)
                      ++..+..++.+.|+...|.-....  +.+.     .......++..      ...+.....+-....  ....+...+++
T Consensus       299 l~~~p~~~~~l~~~~~~~~~~~~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~~--~~~~~~~~~~~  376 (485)
T COG3349         299 LRLVPVITLHLRFDGWVTELTDRNQQFGIDNLLWSDDTLGGVVADLALTSPDYVEPGAGCYLEKVLA--PGWPFLFESDE  376 (485)
T ss_pred             ccccceeEEEEeecCccccccccchhhhhhccccccccCCceeeeccccchhhccccchhhhhhhhc--ccccccccchh
Confidence            677788888898885333211100  0010     00000001000      000110011100000  11234556788


Q ss_pred             HHHHHHHHHHHHhCCCCCCCcEEEeccCCCCCCCCcccccCCCCCchHHHHHhcCCCCceEEeeccccCcCCchhhHHHH
Q 010542          386 AAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFS  465 (507)
Q Consensus       386 e~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA~~  465 (507)
                      ++.....+.+...+|...+-.     .|.+.-....+.....||.. ..+|...+|++|++++||+.-..+.++||+|..
T Consensus       377 ~~~a~~e~~~~~~vP~~~~a~-----~~~~~i~~~q~~~~~~pgs~-~~rP~~~Tpv~N~~laGd~~~~~~~~smE~A~~  450 (485)
T COG3349         377 AIVATFEKELYELVPSLAEAK-----LKSSVLVNQQSLYGLAPGSY-HYRPEQKTPIPNLLLAGDYTKQPYLGSMEGATL  450 (485)
T ss_pred             hHHHHHHHHhhhcCCchhccc-----ccccceeccccccccCCCcc-ccCCCCCCCccchhhccceeecCCcCccchhhh
Confidence            899999999998887644322     11111111111222223332 566777789999999999998878889999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCccccccCCC
Q 010542          466 TGLMAAEDCRMRVLERYGELDLFQPVMGEE  495 (507)
Q Consensus       466 SG~~aA~~i~~~l~~~~~~~~~~~~~~~~~  495 (507)
                      ||++||+.|+..+...-+........+.+.
T Consensus       451 sGl~AA~~v~~~~~~~~~~~~~~~~~~~~~  480 (485)
T COG3349         451 SGLLAANAILDNLGHHAPLDRRDLSDPAPF  480 (485)
T ss_pred             hHHHHHHHHHHhhhhcCccccccccCcCch
Confidence            999999999988765555333344444433

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=99.89  E-value=1.3e-21  Score=182.76  Aligned_cols=236  Identities=19%  Similarity=0.142  Sum_probs=139.3

Q ss_pred             ccCCccccccchHHHHHHHhc-----cCCcccCceeEEEEeeCCcEE-EEEcCCcEEEcCEEEEecCchhhc-cCccccc
Q 010542          233 LPGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGVLK-ARTIKFE  305 (507)
Q Consensus       233 ~~~~~~~~~~G~~~l~~~l~~-----g~~i~~~~~V~~I~~~~~~v~-v~~~~g~~~~ad~VI~a~p~~~~~-~l~~~~~  305 (507)
                      ..|++.++.|||..+.+++++     |.+|.+++.|++|..+++++. |.++||.+++++.||+++.++.+. .++.  .
T Consensus       252 ~~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp--~  329 (561)
T KOG4254|consen  252 HKGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLP--G  329 (561)
T ss_pred             cCCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCC--C
Confidence            457788999999999999975     779999999999999987765 899999999999999999876543 3321  2


Q ss_pred             CCCcHHHHHHHHHcCCc-ce----eEEEEEccCC-C--CCCCcc--------------------ceeecCCC----Ccee
Q 010542          306 PRLPDWKEAAIDDLGVG-IE----NKIIMHFDKV-F--WPNVEF--------------------LGVVSDTS----YGCS  353 (507)
Q Consensus       306 p~l~~~~~~~~~~~~~~-~~----~~~~l~~~~~-~--~~~~~~--------------------~g~~~~~~----~~~~  353 (507)
                      ..||++.  .++++.+. +.    +..++..... -  .|....                    .|.-....    .+.+
T Consensus       330 e~LPeef--~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS  407 (561)
T KOG4254|consen  330 EALPEEF--VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPS  407 (561)
T ss_pred             ccCCchh--hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEeccc
Confidence            2355554  33333221 11    1123332100 0  011000                    01000000    0111


Q ss_pred             eeeccccCCCceEEEEEeccchhHHHhc-------CCHHHHHHHHHHHHHHhCCCCCCCcEEEeccCCCC--CC---CCc
Q 010542          354 YFLNLHKATGHCVLVYMPAGQLARDIEK-------MSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTD--AN---SLG  421 (507)
Q Consensus       354 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~ee~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~--~~---~~g  421 (507)
                      ..++.-.|++++++..++.+.. ..|.+       .-+++..+++++.+++++|++...+.......+-+  .+   ..|
T Consensus       408 ~lDptlappg~Hvl~lf~~~t~-~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfsssv~~~dvgTP~t~qr~l~~~~G  486 (561)
T KOG4254|consen  408 SLDPTLAPPGKHVLHLFTQYTP-EEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSSSVESYDVGTPPTHQRFLGRPGG  486 (561)
T ss_pred             ccCCCcCCCCceEEEEeccCCc-cccccCCcccchHHHHHHHHHHHHHHHHHcCCccceEEEEecCCCchhhHHhcCCCC
Confidence            2223334677888777665443 23332       23577889999999999999887655444333211  00   122


Q ss_pred             ccccCCC-------CCchHHHHHhcCCCCceEEeeccccCcCCchhhHHHHHHHHHHHHHHHH
Q 010542          422 SYSYDTV-------GKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR  477 (507)
Q Consensus       422 ~~~~~~~-------~~~~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~  477 (507)
                      .+.....       ......+..+++|++|||+||+.+.++  |++-+|-  |..+|...+..
T Consensus       487 n~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPG--gGV~a~a--G~~~A~~a~~~  545 (561)
T KOG4254|consen  487 NIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPG--GGVMAAA--GRLAAHSAILD  545 (561)
T ss_pred             cccCcccccccccccCCccccccCCCCCCceEEecCCCCCC--CCccccc--hhHHHHHHhhh
Confidence            2211001       111122334689999999999999886  5665543  88888876554

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=99.80  E-value=1.4e-17  Score=161.08  Aligned_cols=235  Identities=17%  Similarity=0.183  Sum_probs=142.8

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCee-eecCCceeeCCCCCCchHHHHHhcC-CCee
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLG-LPLY  105 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~-~d~G~~~~~~~~~~~~~~~l~~~lg-~~~~  105 (507)
                      ++||+|||||++||++|++|++.|.+|+|+|+++++||.|.+....|.. .+.|+|+++.  ....+.+++.++- ....
T Consensus         1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~t--~~~~v~~~~~~~~~~~~~   78 (377)
T TIGR00031         1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDETILFHQYGPHIFHT--NNQYVWDYISPFFELNNY   78 (377)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCCCceEEeecceeEec--CcHHHHHHHHhhccccce
Confidence            4799999999999999999999999999999999999999887666654 4899999873  4445666666542 1111


Q ss_pred             eecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHH
Q 010542          106 RTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAIS  185 (507)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (507)
                      .  .+....+.+....                   ++.+...+..-......+....++...... .......+++++..
T Consensus        79 ~--~~~~~~~~g~~~~-------------------~P~~~~~i~~l~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~e~~d  136 (377)
T TIGR00031        79 Q--HRVLALYNNLDLT-------------------LPFNFNQFRKLLGVKDAQELQNFFNAQFKY-GDHVPLEELQEIAD  136 (377)
T ss_pred             e--EEEEEEECCeEEc-------------------cCCCHHHHHHhcccchHHHHHHHHHHHhhc-ccCCCCCCHHHHHH
Confidence            0  1111111111100                   000000000000000111111111111110 01111245666653


Q ss_pred             HHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCc---------cccccCCccccccchHHHHHHHhc--
Q 010542          186 IVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDK---------EELLPGGHGLMVRGYLPVINTLAK--  253 (507)
Q Consensus       186 ~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~---------~~~~~~~~~~~~~G~~~l~~~l~~--  253 (507)
                      ..        ...+++.+.+.++.+. ...|+.++++++..+...         .+....-.++|++|+..+.+.|.+  
T Consensus       137 ~~--------~~~~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~Gyt~~~~~ml~~~  208 (377)
T TIGR00031       137 PD--------IQLLYQFLYQKVYKPYTVKQWGLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGGYTKLFEKMLDHP  208 (377)
T ss_pred             HH--------HHHHHHHHHHHhccccCceeeCCChHHCCHHHeEecceEecCCCCcccccccccccccHHHHHHHHHhcC
Confidence            21        2458888999988886 558999999998775431         111222346799999999999986  


Q ss_pred             cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhc
Q 010542          254 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLK  298 (507)
Q Consensus       254 g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~  298 (507)
                      +++|++|+.+..++.+++++.+.  .+ .+. +.||.|.|++.+-
T Consensus       209 ~i~v~l~~~~~~~~~~~~~~~~~--~~-~~~-~~vi~Tg~id~~f  249 (377)
T TIGR00031       209 LIDVKLNCHINLLKDKDSQLHFA--NK-AIR-KPVIYTGLIDQLF  249 (377)
T ss_pred             CCEEEeCCccceeeccccceeec--cc-ccc-CcEEEecCchHHH
Confidence            59999999888888665556543  22 333 8899999888753

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=99.74  E-value=9.7e-17  Score=159.00  Aligned_cols=239  Identities=15%  Similarity=0.146  Sum_probs=135.3

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCC--------------------CeeeecCCceee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSF--------------------GFPVDLGASWLH   85 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~--------------------g~~~d~G~~~~~   85 (507)
                      .+.+||+|||+|++|+.+|..|+++|++|+++|+++.+||+.+|....                    .+.+|+.++.+.
T Consensus         2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~   81 (443)
T PTZ00363          2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIM   81 (443)
T ss_pred             CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeee
Confidence            567999999999999999999999999999999999999999986322                    233555566553


Q ss_pred             CCCCCCchHHHHHhcCCCeeee--cCCCcccc-cccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHH
Q 010542           86 GVCQENPLAPVISRLGLPLYRT--SGDNSVLY-DHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFES  162 (507)
Q Consensus        86 ~~~~~~~~~~l~~~lg~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (507)
                         ....+.+++.+.++...-.  ......++ .++...   +      .+......+......     +.  .+..+.+
T Consensus        82 ---~~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~---~------vP~s~~~~~~s~ll~-----l~--eKr~l~k  142 (443)
T PTZ00363         82 ---ASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIH---K------VPATDMEALSSPLMG-----FF--EKNRCKN  142 (443)
T ss_pred             ---cCChHHHHHhhcCccceeeeEEeceEEEEecCCeEE---E------CCCCHHHHhhCCCcc-----hh--hHHHHHH
Confidence               3456778888887763211  11111121 111000   0      000000000000000     00  1122334


Q ss_pred             HHHHHHHHhhcC--------CCCCcHHHHHHHHhccChhHHhhhhHHHHHH---HHHHhh-hccccCCccccccccc---
Q 010542          163 ILKETDKVREEH--------DEDMSIQRAISIVFDRRPELRLEGLAHKVLQ---WYLCRM-EGWFAADAETISLKSW---  227 (507)
Q Consensus       163 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~s~~~~---  227 (507)
                      |+..+.......        .+..++.++++.+          ++++...+   +++... ...+...+...++..+   
T Consensus       143 fl~~v~~~~~~~~~~~~~~~~d~~T~~d~L~~~----------~ls~~~~d~i~~~ial~~~~~~~~~pa~~tl~ri~~y  212 (443)
T PTZ00363        143 FLQYVSNYDENDPETHKGLNLKTMTMAQLYKKF----------GLEDNTIDFVGHAVALYTNDDYLNKPAIETVMRIKLY  212 (443)
T ss_pred             HHHHHHhhccCChhhhcccCcccCCHHHHHHHh----------CCCHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHH
Confidence            444443322211        2356777876543          34444443   222221 1112221111111111   


Q ss_pred             Cc--cccccCCccccccchHHHHHHHhc-----cCCcccCceeEEEEeeCCc--EEEEEcCCcEEEcCEEEEecC
Q 010542          228 DK--EELLPGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIG--VKVTVEGGKTFVADAVVVAVP  293 (507)
Q Consensus       228 ~~--~~~~~~~~~~~~~G~~~l~~~l~~-----g~~i~~~~~V~~I~~~~~~--v~v~~~~g~~~~ad~VI~a~p  293 (507)
                      ..  ..+......++.+|++.+.++|.+     |++++++++|++|..++++  +.|++++|++++|+.||+..+
T Consensus       213 ~~S~~~~g~~p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s  287 (443)
T PTZ00363        213 MDSLSRYGKSPFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPS  287 (443)
T ss_pred             HHHHhhccCCcceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcc
Confidence            00  001112335678999999999963     8899999999999887543  458888999999999998554

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=99.70  E-value=2.6e-17  Score=118.17  Aligned_cols=68  Identities=35%  Similarity=0.572  Sum_probs=60.3

Q ss_pred             EECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhc
Q 010542           33 VIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRL  100 (507)
Q Consensus        33 IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~l  100 (507)
                      |||||++||+||++|+++|++|+|||+++++||++++...+|+.+|.|++++.....++++.+++++|
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~l~~~L   68 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAHYFFPPDDYPNLFRLLREL   68 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccEEEeCCCCchHHHHHHcCC
Confidence            89999999999999999999999999999999999999889999999999997654556788888875

...

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.69  E-value=8.4e-15  Score=146.43  Aligned_cols=74  Identities=22%  Similarity=0.251  Sum_probs=61.0

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhC----CCeEEEEecCCCCCceeEecc--CCCeeeecCCceeeCCCCCCchHHHHH
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDA----SFKVVLLESRDRVGGRVHTDY--SFGFPVDLGASWLHGVCQENPLAPVIS   98 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~----G~~V~vlE~~~~~GG~~~s~~--~~g~~~d~G~~~~~~~~~~~~~~~l~~   98 (507)
                      ..++.+|+|||||++||+||++|+++    |.+|+|||+++.+||++.+..  ..|+.++.|.+. .  .....++++++
T Consensus        19 ~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~-~--~~y~~l~~ll~   95 (576)
T PRK13977         19 GVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGREM-E--NHFECLWDLFR   95 (576)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCc-c--chHHHHHHHHH
Confidence            34568999999999999999999996    679999999999999998744  568999888663 2  34567888887


Q ss_pred             hcC
Q 010542           99 RLG  101 (507)
Q Consensus        99 ~lg  101 (507)
                      .++
T Consensus        96 ~ip   98 (576)
T PRK13977         96 SIP   98 (576)
T ss_pred             hcc
Confidence            763

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.52  E-value=2.6e-13  Score=133.82  Aligned_cols=42  Identities=36%  Similarity=0.380  Sum_probs=36.5

Q ss_pred             cCCcccCceeEEEEeeCCcEE-EEEcCCcEEEcCEEEEecCchh
Q 010542          254 GLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       254 g~~i~~~~~V~~I~~~~~~v~-v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      |++|+.+++|++|..++++|+ |.+.+|+ +.+|+||+|+++..
T Consensus       161 Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s  203 (358)
T PF01266_consen  161 GVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWS  203 (358)
T ss_dssp             T-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGH
T ss_pred             hhhccccccccchhhcccccccccccccc-cccceeEecccccc
Confidence            899999999999999999998 9999995 99999999998765

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.50  E-value=4.5e-12  Score=125.94  Aligned_cols=50  Identities=28%  Similarity=0.316  Sum_probs=41.3

Q ss_pred             HHHHHHh-ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          246 PVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       246 ~l~~~l~-~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      .+.+.+. .|++++++++|++|..+++++.|++++| ++.+|.||+|++...
T Consensus       154 ~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~  204 (376)
T PRK11259        154 AHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWV  204 (376)
T ss_pred             HHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcch
Confidence            3444333 4899999999999999888888888888 899999999999764

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.48  E-value=1.4e-12  Score=122.58  Aligned_cols=55  Identities=24%  Similarity=0.448  Sum_probs=47.3

Q ss_pred             ccc-cchHHHHHHHhc-----cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecC
Q 010542          239 LMV-RGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP  293 (507)
Q Consensus       239 ~~~-~G~~~l~~~l~~-----g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p  293 (507)
                      ++. ...++++++|.+     |++|+++++|.+|..++....+++.+|++++||.+|+|++
T Consensus       104 Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtG  164 (408)
T COG2081         104 FPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATG  164 (408)
T ss_pred             cCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecC
Confidence            344 566677777743     9999999999999999988999999998999999999996

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.48  E-value=1.4e-11  Score=122.53  Aligned_cols=50  Identities=22%  Similarity=0.284  Sum_probs=40.4

Q ss_pred             HHHHHHHh-ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542          245 LPVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       245 ~~l~~~l~-~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      +.+.+.+. .|++++.+++|++|..+++++.|++.++ ++.+|+||+|++..
T Consensus       149 ~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~  199 (380)
T TIGR01377       149 RALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAW  199 (380)
T ss_pred             HHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcc
Confidence            34444333 3889999999999999888888888777 89999999999864

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=99.48  E-value=8.1e-13  Score=119.44  Aligned_cols=219  Identities=15%  Similarity=0.281  Sum_probs=132.4

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccC--CCee-eecCCceeeCCCCCCchHHHHHhcCC-C
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS--FGFP-VDLGASWLHGVCQENPLAPVISRLGL-P  103 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~--~g~~-~d~G~~~~~~~~~~~~~~~l~~~lg~-~  103 (507)
                      ++|++|||||++|+..|..|++.|++|+|+||.+++||.|.+..-  .|.. .-.|+|.|+  .++..+++.+..+-- .
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFH--T~~~~Vwdyv~~F~e~~   78 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFH--TDNKRVWDYVNQFTEFN   78 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceee--cCchHHHHHHhhhhhhh
Confidence            589999999999999999999999999999999999999998665  4664 448999998  356677777665421 1


Q ss_pred             eeeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHH--HHH-HH-----HHHHHHHHHHHHHhhcCC
Q 010542          104 LYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQEL--VTK-VG-----EAFESILKETDKVREEHD  175 (507)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~-----~~~~~~~~~~~~~~~~~~  175 (507)
                      ....  +                          ...+.+.....+|-.+  +.. +.     .....+...... .....
T Consensus        79 ~Y~h--r--------------------------Vla~~ng~~~~lP~nl~ti~ql~G~~~~p~~a~~~i~~~~~-~~~~~  129 (374)
T COG0562          79 PYQH--R--------------------------VLALVNGQLYPLPFNLNTINQLFGKNFTPDEARKFIEEQAA-EIDIA  129 (374)
T ss_pred             hhcc--c--------------------------eeEEECCeeeeccccHHHHHHHhCccCCHHHHHHHHHHhhc-ccccc
Confidence            0000  0                          0011111111111111  000 00     111122222110 11111


Q ss_pred             CCCcHHHHHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccC---------ccccccCCccccccchH
Q 010542          176 EDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWD---------KEELLPGGHGLMVRGYL  245 (507)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~---------~~~~~~~~~~~~~~G~~  245 (507)
                      +..++++-.           -.-+++.+.+.++.+. ..-|+.+++++.+....         ..+.-..-.+.+++|+-
T Consensus       130 ~~q~~ee~a-----------is~vg~~LY~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~~~dn~YF~d~yQGlP~~GYT  198 (374)
T COG0562         130 EPQNLEEQA-----------ISLVGRDLYEAFFKGYTEKQWGLDPKELPASVIKRLPVRLNFDNRYFSDTYQGLPKDGYT  198 (374)
T ss_pred             chhhhhhHH-----------HHHHHHHHHHHHhccccHHHhCCChHHCCHHHhcccceEEcccCcccCcccccCccccHH
Confidence            122222221           1335667777777665 45788888888766543         11222223568999999


Q ss_pred             HHHHHHhc--cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhc
Q 010542          246 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLK  298 (507)
Q Consensus       246 ~l~~~l~~--g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~  298 (507)
                      .+.+.|.+  .++|++||.-..+.....          .+.+..||.|-|.+.+-
T Consensus       199 ~~~~kMl~hp~I~V~Lntd~~~~~~~~~----------~~~~~~VvytG~iD~~F  243 (374)
T COG0562         199 AMFEKMLDHPNIDVRLNTDFFDVKDQLR----------AIPFAPVVYTGPIDAYF  243 (374)
T ss_pred             HHHHHHhcCCCceEEecCcHHHHhhhhc----------ccCCCceEEecchHhhh
Confidence            99999987  899999998776654332          14456899999888754

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.48  E-value=1e-11  Score=123.65  Aligned_cols=43  Identities=35%  Similarity=0.526  Sum_probs=39.4

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEe
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT   69 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s   69 (507)
                      +++||+|||||+||++||+.|+++|++|+|+|++..+|-...+
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~   44 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC   44 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence            6799999999999999999999999999999999988876533

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.47  E-value=3.3e-11  Score=120.99  Aligned_cols=40  Identities=28%  Similarity=0.481  Sum_probs=35.6

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ++||+|||||++|+++|++|+++|++|+|+|+++.+|+.+
T Consensus         1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~a   40 (410)
T PRK12409          1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMET   40 (410)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCc
Confidence            3699999999999999999999999999999987665433

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.46  E-value=2.3e-11  Score=121.33  Aligned_cols=51  Identities=22%  Similarity=0.258  Sum_probs=42.2

Q ss_pred             HHHHHHhc-c-CCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          246 PVINTLAK-G-LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       246 ~l~~~l~~-g-~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      .|.+.+.+ | ++++++++|++|+.+++++.+++++|+++.+|.||.|.+...
T Consensus       111 ~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S  163 (385)
T TIGR01988       111 ALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANS  163 (385)
T ss_pred             HHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCC
Confidence            34454443 5 799999999999998888999989998999999999988654

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.46  E-value=3.3e-11  Score=120.22  Aligned_cols=50  Identities=16%  Similarity=0.262  Sum_probs=42.0

Q ss_pred             HHHHHhc-cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          247 VINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       247 l~~~l~~-g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      |.+++.+ |++++++++|+++..+++++.|++++|+++.+|.||.|.+...
T Consensus       119 L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S  169 (392)
T PRK08773        119 LWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAS  169 (392)
T ss_pred             HHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCc
Confidence            3344433 8899999999999998888989888888999999999998754

>PRK09126 hypothetical protein; Provisional

Probab=99.44  E-value=2.3e-11  Score=121.46  Aligned_cols=50  Identities=24%  Similarity=0.360  Sum_probs=42.2

Q ss_pred             HHHHHh--ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          247 VINTLA--KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       247 l~~~l~--~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      +.+.+.  .|++|+++++|++++.+++.+.|++++|+++++|.||.|.+...
T Consensus       116 l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S  167 (392)
T PRK09126        116 AYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFS  167 (392)
T ss_pred             HHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCc
Confidence            445554  38899999999999988888888888898999999999998754

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.44  E-value=6.8e-12  Score=125.91  Aligned_cols=40  Identities=30%  Similarity=0.507  Sum_probs=36.9

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR   66 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~   66 (507)
                      +++||+|||||++|++||+.|+++|++|+|+|+.+.+|..
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k   43 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAK   43 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence            4699999999999999999999999999999998877654

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.44  E-value=2e-12  Score=110.71  Aligned_cols=69  Identities=25%  Similarity=0.458  Sum_probs=55.9

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCe
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL  104 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~  104 (507)
                      ....||+|||||.|||+|||+|+++|.+|+|||++-.+||-++-          |++.|+..--+.+..++++++|++.
T Consensus        28 ~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~----------GGmlf~~iVv~~~a~~iL~e~gI~y   96 (262)
T COG1635          28 YLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWG----------GGMLFNKIVVREEADEILDEFGIRY   96 (262)
T ss_pred             hhhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccc----------cccccceeeecchHHHHHHHhCCcc
Confidence            35689999999999999999999999999999999999996532          4555543334556788888888873

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.43  E-value=3.7e-12  Score=129.32  Aligned_cols=51  Identities=20%  Similarity=0.158  Sum_probs=39.7

Q ss_pred             hHHHHHHHh-ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          244 YLPVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       244 ~~~l~~~l~-~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      ...+.+++. .|++|+.+++|++|+. ++.+.|++.+| ++.||+||+|+....
T Consensus       186 ~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s  237 (460)
T TIGR03329       186 VRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWM  237 (460)
T ss_pred             HHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEcccccc
Confidence            345555443 4999999999999985 45577888878 799999999998653

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.42  E-value=7.6e-11  Score=118.72  Aligned_cols=39  Identities=26%  Similarity=0.555  Sum_probs=35.5

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ....+||+|||||++||++|..|+++|++|+|+|+++..
T Consensus        15 ~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   53 (415)
T PRK07364         15 RSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE   53 (415)
T ss_pred             CccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence            345799999999999999999999999999999998754

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.40  E-value=1e-12  Score=129.12  Aligned_cols=41  Identities=32%  Similarity=0.491  Sum_probs=30.1

Q ss_pred             cCCcccCceeEEEEeeCCc-EEEEEcCCcEEEcCEEEEecCc
Q 010542          254 GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPL  294 (507)
Q Consensus       254 g~~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~  294 (507)
                      |++|+++++|.+|..++++ +.|++++++++.||+||+|++-
T Consensus       123 gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG  164 (409)
T PF03486_consen  123 GVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGG  164 (409)
T ss_dssp             T-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----
T ss_pred             CCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCC
Confidence            9999999999999998887 7788867779999999999863

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.39  E-value=2.1e-10  Score=115.04  Aligned_cols=52  Identities=17%  Similarity=0.203  Sum_probs=43.2

Q ss_pred             HHHHHHhc-cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhh
Q 010542          246 PVINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL  297 (507)
Q Consensus       246 ~l~~~l~~-g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~  297 (507)
                      .|.+.+.+ |++++.+++|++++.+++++.|++.+|+++++|.||.|.+.+..
T Consensus       117 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~  169 (405)
T PRK05714        117 ALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA  169 (405)
T ss_pred             HHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence            34444443 78999999999999988889998889989999999999987553

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.38  E-value=3.8e-12  Score=123.71  Aligned_cols=43  Identities=33%  Similarity=0.505  Sum_probs=39.6

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCC--CeEEEEecCCCCCceeEe
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVGGRVHT   69 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~~~GG~~~s   69 (507)
                      +++||+||||||.|+++|+.|++.+  ++|+|+||.+.+|-...+
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~   46 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSS   46 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccccccc
Confidence            5799999999999999999999997  999999999999877655

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=99.38  E-value=2.2e-10  Score=114.06  Aligned_cols=51  Identities=22%  Similarity=0.287  Sum_probs=42.9

Q ss_pred             HHHHHHhc--cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          246 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       246 ~l~~~l~~--g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      .|.+.+.+  |++++++++|++|..++++++|++.+|+++.||.||.|.+.+.
T Consensus       110 ~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S  162 (382)
T TIGR01984       110 ALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANS  162 (382)
T ss_pred             HHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence            34455554  7899999999999988888989888888899999999999764

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.38  E-value=1.9e-10  Score=114.69  Aligned_cols=50  Identities=20%  Similarity=0.084  Sum_probs=40.4

Q ss_pred             HHHHHHhc-c-CCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          246 PVINTLAK-G-LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       246 ~l~~~l~~-g-~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      .|.+.+.+ | ++++ +++|+++..+++.+.|++.+|.++.+|.||.|.+...
T Consensus       116 ~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S  167 (388)
T PRK07608        116 ALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHS  167 (388)
T ss_pred             HHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCc
Confidence            34455543 5 7788 9999999988888889988888899999999998753

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.37  E-value=3.7e-10  Score=113.77  Aligned_cols=39  Identities=26%  Similarity=0.416  Sum_probs=34.8

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      +||+|||||++||++|++|+++|++|+|+|+...+|..+
T Consensus         1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~~~~a   39 (416)
T PRK00711          1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPALET   39 (416)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCchhhhh
Confidence            489999999999999999999999999999976565544

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.36  E-value=2.7e-10  Score=114.30  Aligned_cols=50  Identities=26%  Similarity=0.303  Sum_probs=41.9

Q ss_pred             HHHHHhc-cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          247 VINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       247 l~~~l~~-g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      |.+.+.+ |++++++++|++++.+++++.|++.+|+++.+|.||.|.+...
T Consensus       117 L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S  167 (403)
T PRK07333        117 LRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARS  167 (403)
T ss_pred             HHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCCh
Confidence            4444433 8899999999999998888989888898999999999998653

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.36  E-value=3.6e-10  Score=113.09  Aligned_cols=51  Identities=25%  Similarity=0.346  Sum_probs=42.4

Q ss_pred             HHHHHHhc--cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          246 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       246 ~l~~~l~~--g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      .+.+.+.+  |++++++++|+++..+++++.|++.+|.++.+|.||.|.+...
T Consensus       117 ~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S  169 (395)
T PRK05732        117 RLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHS  169 (395)
T ss_pred             HHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCh
Confidence            34454543  7899999999999988888999988888899999999998754

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.35  E-value=1.9e-10  Score=114.24  Aligned_cols=53  Identities=25%  Similarity=0.320  Sum_probs=43.4

Q ss_pred             HHHHHHhc--cCCcccCceeEEEEeeCCcEEEEEc-CCcEEEcCEEEEecCchhhc
Q 010542          246 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVE-GGKTFVADAVVVAVPLGVLK  298 (507)
Q Consensus       246 ~l~~~l~~--g~~i~~~~~V~~I~~~~~~v~v~~~-~g~~~~ad~VI~a~p~~~~~  298 (507)
                      .|.+++.+  +++++.+++|+.++.+++.+.+++. +|++++||.||-|-+.+...
T Consensus       109 ~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~v  164 (387)
T COG0654         109 ALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAV  164 (387)
T ss_pred             HHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchHH
Confidence            34455543  3799999999999999999888888 99999999999999876543

>PRK10015 oxidoreductase; Provisional

Probab=99.34  E-value=1.2e-10  Score=116.91  Aligned_cols=39  Identities=36%  Similarity=0.543  Sum_probs=35.8

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG   65 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG   65 (507)
                      .++||+|||||++|++||+.|+++|++|+|+|+...+|-
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~   42 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGC   42 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCc
Confidence            469999999999999999999999999999999877653

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=99.34  E-value=1.3e-10  Score=115.91  Aligned_cols=39  Identities=31%  Similarity=0.514  Sum_probs=35.6

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG   64 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~G   64 (507)
                      .+++||+|||||++||++||+|+++|.+|+|+|++...+
T Consensus         2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~   40 (387)
T COG0665           2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG   40 (387)
T ss_pred             CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence            468999999999999999999999999999999966554

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=99.33  E-value=2.6e-10  Score=114.30  Aligned_cols=51  Identities=18%  Similarity=0.213  Sum_probs=42.9

Q ss_pred             HHHHHHhc--cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          246 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       246 ~l~~~l~~--g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      .|.+++.+  |++++++++|++|..+++.+.|++.+|+++++|.||.|.+.+.
T Consensus       116 ~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S  168 (405)
T PRK08850        116 ALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANS  168 (405)
T ss_pred             HHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCC
Confidence            34455543  6899999999999998888899999999999999999999754

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.33  E-value=4.8e-10  Score=111.47  Aligned_cols=51  Identities=20%  Similarity=0.201  Sum_probs=43.0

Q ss_pred             HHHHHhc--cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhh
Q 010542          247 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL  297 (507)
Q Consensus       247 l~~~l~~--g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~  297 (507)
                      |.+++.+  +++++++++|++++.++++++|++++|.++++|.||.|.+.+..
T Consensus       116 L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~  168 (384)
T PRK08849        116 LWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQ  168 (384)
T ss_pred             HHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCch
Confidence            3344443  68999999999999988889999999999999999999987653

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.32  E-value=4.1e-10  Score=112.32  Aligned_cols=52  Identities=23%  Similarity=0.153  Sum_probs=40.9

Q ss_pred             HHHHHHHhc-cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          245 LPVINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       245 ~~l~~~l~~-g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      +.+.+.+.+ +...+++++|++++.+++++.|++++|+++++|.||.|.+...
T Consensus       115 ~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S  167 (388)
T PRK07494        115 RALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNS  167 (388)
T ss_pred             HHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCc
Confidence            334455443 3334889999999998899999988898999999999998754

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=99.32  E-value=8.4e-10  Score=110.20  Aligned_cols=51  Identities=18%  Similarity=0.218  Sum_probs=42.5

Q ss_pred             HHHHHHhc--cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          246 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       246 ~l~~~l~~--g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      .|.+.+.+  |++++.+++|+++..+++++.|++.+|+++++|.||.|.+...
T Consensus       117 ~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S  169 (391)
T PRK08020        117 ALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANS  169 (391)
T ss_pred             HHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCc
Confidence            34454443  8899999999999988888888888888999999999998765

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.32  E-value=1.1e-10  Score=111.78  Aligned_cols=37  Identities=41%  Similarity=0.531  Sum_probs=34.4

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG   65 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG   65 (507)
                      +||+|||||++||++|+.|++.|.+|+|+|++...+.
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~   37 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY   37 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence            6999999999999999999999999999999877654

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.32  E-value=1.6e-10  Score=115.92  Aligned_cols=40  Identities=33%  Similarity=0.483  Sum_probs=34.6

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhC-CC-eEEEEecCCCCCc
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDA-SF-KVVLLESRDRVGG   65 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~-G~-~V~vlE~~~~~GG   65 (507)
                      ....+||+|||||++|+++||+|+++ |. +|+|+|++. +|+
T Consensus        27 ~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~-~~~   68 (407)
T TIGR01373        27 PKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW-LGG   68 (407)
T ss_pred             CCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc-ccC
Confidence            45679999999999999999999995 95 999999975 443

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK08013 oxidoreductase; Provisional

Probab=99.31  E-value=6.8e-10  Score=110.95  Aligned_cols=51  Identities=12%  Similarity=0.074  Sum_probs=42.8

Q ss_pred             HHHHHhc--cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhh
Q 010542          247 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL  297 (507)
Q Consensus       247 l~~~l~~--g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~  297 (507)
                      |.+++.+  |++++++++|++|+.+++.+.+++.+|+++++|.||-|-+.+..
T Consensus       117 L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~  169 (400)
T PRK08013        117 LWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSW  169 (400)
T ss_pred             HHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcH
Confidence            4454544  78999999999999888889898889999999999999987643

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.30  E-value=1.8e-11  Score=122.01  Aligned_cols=51  Identities=27%  Similarity=0.398  Sum_probs=41.3

Q ss_pred             HHHHHHHh-ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          245 LPVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       245 ~~l~~~l~-~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      +.+.+.+. .|++++++++|++|..+++++.|++.+| ++.+|.||+|++...
T Consensus       153 ~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s  204 (393)
T PRK11728        153 EAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMS  204 (393)
T ss_pred             HHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcch
Confidence            44444443 3889999999999998888888888777 899999999998754

>PRK07588 hypothetical protein; Provisional

Probab=99.29  E-value=2.5e-10  Score=113.95  Aligned_cols=50  Identities=24%  Similarity=0.243  Sum_probs=42.6

Q ss_pred             HHHhccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhc
Q 010542          249 NTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLK  298 (507)
Q Consensus       249 ~~l~~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~  298 (507)
                      +++..+++|+++++|++|+.+++++.|++++|+++++|.||.|.+.+...
T Consensus       111 ~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~v  160 (391)
T PRK07588        111 TAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSHV  160 (391)
T ss_pred             HhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCccc
Confidence            44445689999999999999999999999999889999999999876543

>PRK06847 hypothetical protein; Provisional

Probab=99.29  E-value=4.7e-10  Score=111.41  Aligned_cols=44  Identities=43%  Similarity=0.398  Sum_probs=39.6

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      .|++++++++|++|+.+++++.+++.+|+++.+|.||.|.+...
T Consensus       120 ~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s  163 (375)
T PRK06847        120 AGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYS  163 (375)
T ss_pred             hCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCc
Confidence            38899999999999988888889888998999999999998754

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.26  E-value=1.5e-09  Score=115.19  Aligned_cols=53  Identities=25%  Similarity=0.345  Sum_probs=42.7

Q ss_pred             HHHHHHHhccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhh
Q 010542          245 LPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL  297 (507)
Q Consensus       245 ~~l~~~l~~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~  297 (507)
                      ..+.+.+.+|++++.+++|++|..++++|.|++.+|..+.+|.||+|++....
T Consensus       412 ~aL~~~a~~Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~  464 (662)
T PRK01747        412 RALLALAGQQLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAA  464 (662)
T ss_pred             HHHHHhcccCcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcc
Confidence            34444443478999999999999988889998888877789999999998653

>PRK06184 hypothetical protein; Provisional

Probab=99.25  E-value=1.6e-09  Score=111.50  Aligned_cols=51  Identities=24%  Similarity=0.244  Sum_probs=40.8

Q ss_pred             HHHHHhc-cCCcccCceeEEEEeeCCcEEEEE---cCCcEEEcCEEEEecCchhh
Q 010542          247 VINTLAK-GLDIRLGHRVTKITRHYIGVKVTV---EGGKTFVADAVVVAVPLGVL  297 (507)
Q Consensus       247 l~~~l~~-g~~i~~~~~V~~I~~~~~~v~v~~---~~g~~~~ad~VI~a~p~~~~  297 (507)
                      |.+.+.+ |++|+++++|++|+.+++++++++   .+++++++|.||.|.+.+..
T Consensus       115 L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~  169 (502)
T PRK06184        115 LRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSF  169 (502)
T ss_pred             HHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchH
Confidence            3444443 889999999999999888888766   55668999999999987653

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.25  E-value=1.5e-10  Score=106.84  Aligned_cols=41  Identities=37%  Similarity=0.540  Sum_probs=38.6

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ..+||+|||||++||+||+.|+++|++|+|+||+..+||.+
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~   60 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS   60 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence            47999999999999999999999999999999999998864

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK11445 putative oxidoreductase; Provisional

Probab=99.25  E-value=2.8e-09  Score=104.50  Aligned_cols=48  Identities=19%  Similarity=0.123  Sum_probs=38.8

Q ss_pred             HHHhccCCcccCceeEEEEeeCCcEEEEE-cCCc--EEEcCEEEEecCchh
Q 010542          249 NTLAKGLDIRLGHRVTKITRHYIGVKVTV-EGGK--TFVADAVVVAVPLGV  296 (507)
Q Consensus       249 ~~l~~g~~i~~~~~V~~I~~~~~~v~v~~-~~g~--~~~ad~VI~a~p~~~  296 (507)
                      +....|+++++++.|++++.+++++.|++ .+|+  ++++|.||.|.+...
T Consensus       107 ~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S  157 (351)
T PRK11445        107 SLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANS  157 (351)
T ss_pred             HHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCc
Confidence            33345889999999999998888888775 5664  689999999998764

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.24  E-value=1.2e-10  Score=107.96  Aligned_cols=42  Identities=33%  Similarity=0.494  Sum_probs=39.0

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ...+||+|||||++||+||++|++.|++|+|+|++..+||.+
T Consensus        23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~   64 (257)
T PRK04176         23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM   64 (257)
T ss_pred             hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence            457999999999999999999999999999999999998854

>PRK06834 hypothetical protein; Provisional

Probab=99.23  E-value=4.6e-09  Score=107.07  Aligned_cols=44  Identities=30%  Similarity=0.339  Sum_probs=39.5

Q ss_pred             cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhh
Q 010542          254 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL  297 (507)
Q Consensus       254 g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~  297 (507)
                      |++|+++++|++|+.+++++.+++.+|+++++|.||.|.+....
T Consensus       114 gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~  157 (488)
T PRK06834        114 GVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL  157 (488)
T ss_pred             CCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence            88999999999999999999888888888999999999987543

>PRK08244 hypothetical protein; Provisional

Probab=99.22  E-value=3.4e-09  Score=108.99  Aligned_cols=35  Identities=31%  Similarity=0.418  Sum_probs=33.1

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ++||+|||||++||++|..|++.|++|+|+|+++.
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~   36 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE   36 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            58999999999999999999999999999999764

>PRK06185 hypothetical protein; Provisional

Probab=99.22  E-value=3.1e-09  Score=106.77  Aligned_cols=38  Identities=24%  Similarity=0.402  Sum_probs=34.7

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ..+.+||+|||||++||++|+.|++.|++|+|+|+++.
T Consensus         3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~   40 (407)
T PRK06185          3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD   40 (407)
T ss_pred             ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            34679999999999999999999999999999999753

>PRK07045 putative monooxygenase; Reviewed

Probab=99.21  E-value=7.8e-09  Score=103.05  Aligned_cols=51  Identities=20%  Similarity=0.316  Sum_probs=40.3

Q ss_pred             HHHHHhc--cCCcccCceeEEEEeeCCc--EEEEEcCCcEEEcCEEEEecCchhh
Q 010542          247 VINTLAK--GLDIRLGHRVTKITRHYIG--VKVTVEGGKTFVADAVVVAVPLGVL  297 (507)
Q Consensus       247 l~~~l~~--g~~i~~~~~V~~I~~~~~~--v~v~~~~g~~~~ad~VI~a~p~~~~  297 (507)
                      +.+.+.+  |++++++++|+.|+.++++  +.|++.+|+++.+|.||.|.+....
T Consensus       112 L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~  166 (388)
T PRK07045        112 LLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSM  166 (388)
T ss_pred             HHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChH
Confidence            4444432  6899999999999987665  3578888989999999999987653

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.20  E-value=7.1e-11  Score=106.43  Aligned_cols=42  Identities=40%  Similarity=0.506  Sum_probs=33.1

Q ss_pred             cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542          254 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       254 g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      +++++++++|++|.+++++|.|++.++++++||+||+|++..
T Consensus        96 ~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~  137 (203)
T PF13738_consen   96 GLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHY  137 (203)
T ss_dssp             TGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SS
T ss_pred             CcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeecc
Confidence            667999999999999999999999999899999999999953

...

>PRK07190 hypothetical protein; Provisional

Probab=99.19  E-value=4.8e-09  Score=106.80  Aligned_cols=44  Identities=18%  Similarity=0.209  Sum_probs=39.6

Q ss_pred             cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhh
Q 010542          254 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL  297 (507)
Q Consensus       254 g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~  297 (507)
                      |++|+++++|++|+.+++++.+++.+|++++|+.||.|.+.+..
T Consensus       123 Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S~  166 (487)
T PRK07190        123 GAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRSF  166 (487)
T ss_pred             CCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCHH
Confidence            89999999999999998888888888889999999999997653

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=99.19  E-value=5.7e-09  Score=95.45  Aligned_cols=60  Identities=18%  Similarity=0.191  Sum_probs=46.1

Q ss_pred             ccccchHHHHHHHhc-cCCcccCceeEEEEe---eCCcEEEEEcCCcEEEcCEEEEecCchhhc
Q 010542          239 LMVRGYLPVINTLAK-GLDIRLGHRVTKITR---HYIGVKVTVEGGKTFVADAVVVAVPLGVLK  298 (507)
Q Consensus       239 ~~~~G~~~l~~~l~~-g~~i~~~~~V~~I~~---~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~  298 (507)
                      ........+.+.+++ |+.++-+..|+.+..   ++..+.|.|++|..+.++.+|+|+++....
T Consensus       151 ~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k  214 (399)
T KOG2820|consen  151 NAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK  214 (399)
T ss_pred             eHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh
Confidence            333444555565554 889999999998874   445678999999889999999999987654

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.18  E-value=7.3e-09  Score=107.15  Aligned_cols=40  Identities=30%  Similarity=0.532  Sum_probs=35.7

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG   65 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG   65 (507)
                      ...+||+|||||++|+++|+.|+++|++|+|+|+++..+|
T Consensus         4 ~~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~G   43 (546)
T PRK11101          4 SQETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATG   43 (546)
T ss_pred             CccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCC
Confidence            3469999999999999999999999999999999765444

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.18  E-value=9.1e-09  Score=101.90  Aligned_cols=51  Identities=2%  Similarity=0.049  Sum_probs=41.0

Q ss_pred             HHHHHHhc--cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhh
Q 010542          246 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL  297 (507)
Q Consensus       246 ~l~~~l~~--g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~  297 (507)
                      .|.+++.+  +++++++++|++|..+++++.|++.++ ++++|.||-|-+.+..
T Consensus       109 ~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~  161 (374)
T PRK06617        109 ILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSK  161 (374)
T ss_pred             HHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCch
Confidence            34454444  468899999999999888898888777 9999999999987643

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.18  E-value=1.4e-08  Score=104.28  Aligned_cols=43  Identities=26%  Similarity=0.406  Sum_probs=38.4

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      +.+++||+|||||++|+++|+.|+++|.+|+|+|+++..+|-.
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS   45 (508)
T PRK12266          3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATS   45 (508)
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence            3567999999999999999999999999999999987766644

>PRK05868 hypothetical protein; Validated

Probab=99.16  E-value=2.3e-08  Score=98.80  Aligned_cols=48  Identities=17%  Similarity=0.085  Sum_probs=41.7

Q ss_pred             HhccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhc
Q 010542          251 LAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLK  298 (507)
Q Consensus       251 l~~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~  298 (507)
                      +..|++++++++|++|+.++++++|++++|+++++|.||-|-+.+...
T Consensus       115 ~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~v  162 (372)
T PRK05868        115 TQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSNV  162 (372)
T ss_pred             ccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCchH
Confidence            345889999999999998888899999999999999999999876543

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=99.16  E-value=2.3e-08  Score=100.60  Aligned_cols=42  Identities=33%  Similarity=0.430  Sum_probs=36.7

Q ss_pred             cCCCCCCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           20 NAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        20 ~~~~~~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      .+++...+++||+|||||++|++||+.|+++|++|+|+|++.
T Consensus        31 ~~~~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~   72 (450)
T PLN00093         31 ASKKLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL   72 (450)
T ss_pred             CCCCcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            334445678999999999999999999999999999999964

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=99.16  E-value=1.4e-08  Score=102.63  Aligned_cols=53  Identities=17%  Similarity=0.136  Sum_probs=41.3

Q ss_pred             HHHHHHhc----cCCcccCceeEEEEee-------CCcEEEEEcCCcEEEcCEEEEecCchhhc
Q 010542          246 PVINTLAK----GLDIRLGHRVTKITRH-------YIGVKVTVEGGKTFVADAVVVAVPLGVLK  298 (507)
Q Consensus       246 ~l~~~l~~----g~~i~~~~~V~~I~~~-------~~~v~v~~~~g~~~~ad~VI~a~p~~~~~  298 (507)
                      .|.+.+.+    +++++++++|++|+.+       +++++|++.+|++++||.||-|-+.+...
T Consensus       122 ~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~v  185 (437)
T TIGR01989       122 SLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNV  185 (437)
T ss_pred             HHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChh
Confidence            34455543    3789999999999753       45688888999999999999999876543

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK06753 hypothetical protein; Provisional

Probab=99.15  E-value=1.4e-08  Score=100.69  Aligned_cols=44  Identities=23%  Similarity=0.139  Sum_probs=38.8

Q ss_pred             cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhh
Q 010542          254 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL  297 (507)
Q Consensus       254 g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~  297 (507)
                      +.+|+++++|++|+.+++++.|++.+|+++++|.||-|-+.+..
T Consensus       110 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~  153 (373)
T PRK06753        110 EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK  153 (373)
T ss_pred             CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence            45799999999999888889999999989999999999987543

>PRK06996 hypothetical protein; Provisional

Probab=99.14  E-value=1.1e-08  Score=102.30  Aligned_cols=49  Identities=12%  Similarity=0.029  Sum_probs=39.6

Q ss_pred             HHHHHHhc-cCCcccCceeEEEEeeCCcEEEEEcCC---cEEEcCEEEEecCc
Q 010542          246 PVINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAVPL  294 (507)
Q Consensus       246 ~l~~~l~~-g~~i~~~~~V~~I~~~~~~v~v~~~~g---~~~~ad~VI~a~p~  294 (507)
                      .|.+.+.+ |++++++++|++++.++++|+++..+|   +++++|.||-|-+.
T Consensus       120 ~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~  172 (398)
T PRK06996        120 ALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGG  172 (398)
T ss_pred             HHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCC
Confidence            34455544 788999999999999889999887754   58999999999773

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=99.14  E-value=9.4e-09  Score=107.32  Aligned_cols=38  Identities=24%  Similarity=0.422  Sum_probs=34.9

Q ss_pred             eEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ||+|||||++||+||..++++|.+|+|+||....||.+
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s   38 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHT   38 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence            79999999999999999999999999999988776643

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.14  E-value=2.9e-09  Score=105.97  Aligned_cols=32  Identities=41%  Similarity=0.570  Sum_probs=31.1

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      +||+|||||++|++||+.|++.|++|+|+|++
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            69999999999999999999999999999996

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.13  E-value=1.2e-09  Score=110.48  Aligned_cols=52  Identities=25%  Similarity=0.234  Sum_probs=40.6

Q ss_pred             HHHHHHHhc-----c--CCcccCceeEEEEee-CCcEEEEEcCCcEEEcCEEEEecCchhh
Q 010542          245 LPVINTLAK-----G--LDIRLGHRVTKITRH-YIGVKVTVEGGKTFVADAVVVAVPLGVL  297 (507)
Q Consensus       245 ~~l~~~l~~-----g--~~i~~~~~V~~I~~~-~~~v~v~~~~g~~~~ad~VI~a~p~~~~  297 (507)
                      ..+.+.+.+     |  ++|+++++|++|..+ ++.+.|++.+| ++.||.||+|++.+..
T Consensus       215 ~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~  274 (497)
T PTZ00383        215 ESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL  274 (497)
T ss_pred             HHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence            445555443     6  578999999999988 44577888888 7999999999987653

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=99.13  E-value=1.3e-09  Score=113.17  Aligned_cols=39  Identities=28%  Similarity=0.459  Sum_probs=35.6

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG   64 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~G   64 (507)
                      ...+||+|||||++||++|..|++.|++|+|+|++..++
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~   46 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLY   46 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            457899999999999999999999999999999987653

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.13  E-value=2.3e-11  Score=105.13  Aligned_cols=70  Identities=27%  Similarity=0.457  Sum_probs=46.9

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCeee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR  106 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~  106 (507)
                      ..+||+|||||++||+||++|+++|++|+|||++..+||.++.          |++.|+...-+.....+++++|++...
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~----------Gg~lf~~iVVq~~a~~iL~elgi~y~~   85 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWG----------GGMLFNKIVVQEEADEILDELGIPYEE   85 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-----------CTT---EEEETTTHHHHHHHT---EE
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccc----------cccccchhhhhhhHHHHHHhCCceeEE
Confidence            4689999999999999999999999999999999999986532          233332111233567899999997543

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=99.12  E-value=1.4e-08  Score=101.18  Aligned_cols=35  Identities=43%  Similarity=0.610  Sum_probs=33.2

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ++||+|||||++||++|..|+++|++|+|+|+++.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            58999999999999999999999999999999874

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.12  E-value=1.1e-09  Score=110.21  Aligned_cols=42  Identities=45%  Similarity=0.631  Sum_probs=39.3

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ...++|+|||||++||+||.+|+++|++|+|||+++.+||..
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W   49 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLW   49 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCccee
Confidence            456899999999999999999999999999999999999965

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.11  E-value=3.1e-08  Score=102.82  Aligned_cols=40  Identities=28%  Similarity=0.443  Sum_probs=36.4

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR   66 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~   66 (507)
                      ..+||+|||||++||+||..++++|.+|+|+||....||.
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~   43 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSH   43 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence            4689999999999999999999999999999998776663

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.11  E-value=2e-08  Score=105.22  Aligned_cols=40  Identities=30%  Similarity=0.456  Sum_probs=36.4

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG   65 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG   65 (507)
                      .+.+||+|||||+.|+++|+.|+++|++|+|+|+++..+|
T Consensus        69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G  108 (627)
T PLN02464         69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG  108 (627)
T ss_pred             CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence            3469999999999999999999999999999999876666

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.10  E-value=1.1e-07  Score=93.81  Aligned_cols=49  Identities=37%  Similarity=0.333  Sum_probs=41.4

Q ss_pred             HHHHhccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          248 INTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       248 ~~~l~~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      .+.+.++..+++++.|++|+..++.+.|++++|.+++|+.||-|.++..
T Consensus        94 ~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~  142 (374)
T PF05834_consen   94 LERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSS  142 (374)
T ss_pred             HHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccc
Confidence            3444456678999999999999998889999999999999999998654

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PLN02463 lycopene beta cyclase

Probab=99.10  E-value=3.8e-08  Score=98.56  Aligned_cols=43  Identities=19%  Similarity=0.239  Sum_probs=37.0

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      .|++++ +++|++|+..++++.|++++|.+++||.||.|++...
T Consensus       127 ~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s  169 (447)
T PLN02463        127 NGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSR  169 (447)
T ss_pred             cCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCc
Confidence            377775 6799999998888899999998999999999998753

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=99.09  E-value=2.1e-08  Score=104.36  Aligned_cols=39  Identities=36%  Similarity=0.540  Sum_probs=35.6

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      .+.++||+|||||++||++|+.|++.|++|+|+|+++.+
T Consensus        20 ~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~   58 (547)
T PRK08132         20 DPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL   58 (547)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            346789999999999999999999999999999998754

>PRK07236 hypothetical protein; Provisional

Probab=99.08  E-value=2.2e-09  Score=106.89  Aligned_cols=43  Identities=19%  Similarity=0.087  Sum_probs=38.3

Q ss_pred             cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          254 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       254 g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      +.+++++++|++|+.++++++|++++|+++++|.||.|-+.+.
T Consensus       112 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S  154 (386)
T PRK07236        112 AERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRS  154 (386)
T ss_pred             CcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence            4579999999999998888999999999999999999987654

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.08  E-value=1.2e-09  Score=108.09  Aligned_cols=37  Identities=32%  Similarity=0.550  Sum_probs=33.2

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG   65 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG   65 (507)
                      +||+|||||++|+++|++|+++|++|+|+|+.....|
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~~g   37 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRAQG   37 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence            5899999999999999999999999999999764333

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.07  E-value=4.8e-09  Score=107.63  Aligned_cols=42  Identities=33%  Similarity=0.525  Sum_probs=38.9

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      +..+||+|||||++||+||+.++++|.+|+||||....||..
T Consensus        59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s  100 (506)
T PRK06481         59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNT  100 (506)
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence            457899999999999999999999999999999999998854

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.05  E-value=3.3e-08  Score=98.65  Aligned_cols=36  Identities=36%  Similarity=0.565  Sum_probs=33.9

Q ss_pred             eEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542           30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG   65 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG   65 (507)
                      ||+|||||++||++|+.|++.|++|+|+|+++..||
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~   36 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG   36 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC
Confidence            799999999999999999999999999999877765

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.05  E-value=7.2e-08  Score=99.97  Aligned_cols=39  Identities=28%  Similarity=0.322  Sum_probs=34.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC-CCce
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR-VGGR   66 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~-~GG~   66 (507)
                      ..+||+|||||.|||+||..+ +.|.+|+|+||... .||.
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~   45 (543)
T PRK06263          6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGC   45 (543)
T ss_pred             eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCcc
Confidence            468999999999999999999 88999999999764 4454

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=99.05  E-value=2.9e-09  Score=107.25  Aligned_cols=36  Identities=50%  Similarity=0.774  Sum_probs=33.3

Q ss_pred             eEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542           30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG   65 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG   65 (507)
                      ||+|||+|++||+||+.++++|.+|+|+||....||
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg   36 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG   36 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc
Confidence            899999999999999999999999999999999998

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK06126 hypothetical protein; Provisional

Probab=99.03  E-value=4e-08  Score=102.41  Aligned_cols=37  Identities=27%  Similarity=0.495  Sum_probs=34.1

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ...+||+|||||++||++|..|+++|++|+|+|+++.
T Consensus         5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~   41 (545)
T PRK06126          5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG   41 (545)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            4568999999999999999999999999999999753

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.03  E-value=2.4e-09  Score=105.47  Aligned_cols=35  Identities=43%  Similarity=0.563  Sum_probs=30.9

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      +||+|||||++||++|..|+++|++|+|||++...
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~   36 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP   36 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence            69999999999999999999999999999997654

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.03  E-value=5.4e-09  Score=105.90  Aligned_cols=38  Identities=42%  Similarity=0.666  Sum_probs=35.9

Q ss_pred             eEEEECccHHHHHHHHHHHhCC-CeEEEEecCCCCCcee
Q 010542           30 SVIVIGAGMAGVAAARALHDAS-FKVVLLESRDRVGGRV   67 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~~~~GG~~   67 (507)
                      ||+|||||++||+||+.++++| .+|+|+||.+..||.+
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s   39 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNS   39 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcc
Confidence            7999999999999999999999 9999999999988854

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.02  E-value=1.7e-08  Score=102.48  Aligned_cols=42  Identities=19%  Similarity=0.390  Sum_probs=36.8

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~~   67 (507)
                      ...+||+||||||.|+++||+|++.  |.+|+|+||.+.+|+..
T Consensus         3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~s   46 (494)
T PRK05257          3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALES   46 (494)
T ss_pred             CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhc
Confidence            4568999999999999999999985  78999999987776654

>PLN02661 Putative thiazole synthesis

Probab=99.02  E-value=3.5e-09  Score=100.32  Aligned_cols=43  Identities=30%  Similarity=0.510  Sum_probs=38.4

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhC-CCeEEEEecCCCCCceeE
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~-G~~V~vlE~~~~~GG~~~   68 (507)
                      ...+||+|||||++||+||+.|+++ |++|+|+|++..+||.+.
T Consensus        90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~  133 (357)
T PLN02661         90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAW  133 (357)
T ss_pred             cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccccee
Confidence            3468999999999999999999986 899999999999988543

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.02  E-value=1.6e-07  Score=93.72  Aligned_cols=42  Identities=36%  Similarity=0.516  Sum_probs=39.2

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ...+||+||||||+|+.+|+.++.+|++|+|+|+++...|-.
T Consensus        10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTS   51 (532)
T COG0578          10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTS   51 (532)
T ss_pred             ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCccc
Confidence            378999999999999999999999999999999999888854

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=99.02  E-value=1.9e-07  Score=97.89  Aligned_cols=41  Identities=24%  Similarity=0.331  Sum_probs=37.0

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR   66 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~   66 (507)
                      ...+||+|||||+|||+||..++++|.+|+|+||....||.
T Consensus        27 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~   67 (617)
T PTZ00139         27 DHTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSH   67 (617)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCC
Confidence            35789999999999999999999999999999998776663

>TIGR02028 ChlP geranylgeranyl reductase

Probab=99.02  E-value=6.3e-08  Score=96.44  Aligned_cols=36  Identities=36%  Similarity=0.505  Sum_probs=33.0

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG   64 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~G   64 (507)
                      +||+|||||++|++||+.|+++|++|+|+|++...+
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~   36 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA   36 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence            689999999999999999999999999999976543

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK07538 hypothetical protein; Provisional

Probab=99.01  E-value=1.8e-07  Score=93.94  Aligned_cols=35  Identities=29%  Similarity=0.578  Sum_probs=32.6

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      +||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   35 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL   35 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence            58999999999999999999999999999997644

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.00  E-value=2.3e-09  Score=107.43  Aligned_cols=56  Identities=41%  Similarity=0.581  Sum_probs=47.4

Q ss_pred             CCCCCCeEEEECccHHHHHHHHHHHhCCCe-EEEEecCCCCCceeEeccCCCeeeec
Q 010542           24 GQARSPSVIVIGAGMAGVAAARALHDASFK-VVLLESRDRVGGRVHTDYSFGFPVDL   79 (507)
Q Consensus        24 ~~~~~~dv~IIGaGiaGL~aA~~L~~~G~~-V~vlE~~~~~GG~~~s~~~~g~~~d~   79 (507)
                      +..+.+||+|||||++||++|++|.++|.. ++||||++++||--+....++...+.
T Consensus         4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~   60 (443)
T COG2072           4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDS   60 (443)
T ss_pred             CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECC
Confidence            356789999999999999999999999998 99999999999976555555555544

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.00  E-value=1.5e-08  Score=103.37  Aligned_cols=42  Identities=43%  Similarity=0.551  Sum_probs=37.3

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC--CCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR--VGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~--~GG~~   67 (507)
                      ...+||+|||||++||+||+.|+++|.+|+|+||...  .||.+
T Consensus         2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s   45 (466)
T PRK08274          2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNS   45 (466)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCccc
Confidence            4578999999999999999999999999999999874  56643

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.00  E-value=8.1e-09  Score=104.75  Aligned_cols=39  Identities=26%  Similarity=0.490  Sum_probs=35.0

Q ss_pred             CeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCcee
Q 010542           29 PSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRV   67 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~~   67 (507)
                      +||+||||||+|+++|++|++.  |.+|+|+|+.+.+|...
T Consensus         1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~   41 (483)
T TIGR01320         1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAES   41 (483)
T ss_pred             CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhh
Confidence            5999999999999999999997  99999999987776544

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.99  E-value=1.2e-08  Score=102.84  Aligned_cols=42  Identities=19%  Similarity=0.343  Sum_probs=37.1

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~~   67 (507)
                      ...+||+||||||+|+++|+.|++.  |.+|+|+|+.+.+|-.+
T Consensus         4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~s   47 (497)
T PRK13339          4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIES   47 (497)
T ss_pred             CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhc
Confidence            4568999999999999999999998  89999999966776654

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.98  E-value=4.8e-09  Score=104.96  Aligned_cols=52  Identities=17%  Similarity=0.256  Sum_probs=42.4

Q ss_pred             HHHHHHhc--cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhh
Q 010542          246 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL  297 (507)
Q Consensus       246 ~l~~~l~~--g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~  297 (507)
                      .|.+.+.+  +++++++++|+++..+++++.+++.+|+++.+|.||.|.+....
T Consensus       114 ~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  167 (396)
T PRK08163        114 SLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSV  167 (396)
T ss_pred             HHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChH
Confidence            34455543  47899999999999888889898889989999999999987643

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.97  E-value=1.9e-07  Score=97.87  Aligned_cols=40  Identities=25%  Similarity=0.352  Sum_probs=36.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR   66 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~   66 (507)
                      ..+||+|||||+|||+||..++++|.+|+|+||....||.
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~   88 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSH   88 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCc
Confidence            4689999999999999999999999999999998776663

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=98.97  E-value=6.2e-08  Score=100.38  Aligned_cols=50  Identities=24%  Similarity=0.230  Sum_probs=40.7

Q ss_pred             HHHHHhccC---CcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          247 VINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       247 l~~~l~~g~---~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      |.+.|.+.+   .++++++|++|+..+++++|++++|+++.+|.||.|-+.+.
T Consensus       196 L~~~L~~alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S  248 (668)
T PLN02927        196 LQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWS  248 (668)
T ss_pred             HHHHHHhhCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCc
Confidence            445554422   36789999999999999999999998999999999998765

>PLN02697 lycopene epsilon cyclase

Probab=98.96  E-value=5.3e-07  Score=91.88  Aligned_cols=35  Identities=29%  Similarity=0.397  Sum_probs=32.6

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ...+||+|||||++||++|..|++.|++|+|+|+.
T Consensus       106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~  140 (529)
T PLN02697        106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPD  140 (529)
T ss_pred             cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence            45699999999999999999999999999999984

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.95  E-value=1.1e-08  Score=98.21  Aligned_cols=41  Identities=29%  Similarity=0.377  Sum_probs=36.3

Q ss_pred             cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542          254 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       254 g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      |+++++ ++|++|+..++.+.+++.+|+++.+|+||+|++..
T Consensus        71 gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~  111 (300)
T TIGR01292        71 GAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGAS  111 (300)
T ss_pred             CCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCC
Confidence            778888 89999999888888888888899999999999874

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.94  E-value=4e-09  Score=108.26  Aligned_cols=42  Identities=31%  Similarity=0.499  Sum_probs=37.4

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR   66 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~   66 (507)
                      +..++||+|||||++|+++|+.|+++|.+|+|+|+++..+|-
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~Gt   44 (502)
T PRK13369          3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGT   44 (502)
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCC
Confidence            456799999999999999999999999999999998765553

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.93  E-value=2.1e-08  Score=100.87  Aligned_cols=51  Identities=22%  Similarity=0.259  Sum_probs=41.7

Q ss_pred             HHHHHhc---cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhh
Q 010542          247 VINTLAK---GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL  297 (507)
Q Consensus       247 l~~~l~~---g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~  297 (507)
                      |.+.|.+   ...++++++|++|+..+++|+|++++|+++.+|.||.|.+.+..
T Consensus       107 l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~  160 (414)
T TIGR03219       107 FLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA  160 (414)
T ss_pred             HHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence            4444543   34688999999999988889999999989999999999987653

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.93  E-value=5e-08  Score=100.92  Aligned_cols=41  Identities=34%  Similarity=0.639  Sum_probs=38.5

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ..++||+|||+| +||+||...++.|.+|+|+||.+.+||.+
T Consensus        14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~   54 (564)
T PRK12845         14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGST   54 (564)
T ss_pred             CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcc
Confidence            568999999999 89999999999999999999999999965

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.93  E-value=2.4e-07  Score=97.36  Aligned_cols=36  Identities=22%  Similarity=0.444  Sum_probs=33.4

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHh-CCCeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHD-ASFKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~-~G~~V~vlE~~~   61 (507)
                      .+++||+|||||++||++|..|++ .|++|+|+|+.+
T Consensus        30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~   66 (634)
T PRK08294         30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKP   66 (634)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCC
Confidence            568999999999999999999999 499999999975

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=98.92  E-value=9.9e-08  Score=93.21  Aligned_cols=72  Identities=22%  Similarity=0.321  Sum_probs=53.1

Q ss_pred             CCeEEEECccHHHHHHHHHHHhC----CCeEEEEecCCCCCceeEeccC--CCeeeecCCceeeCCCCCCchHHHHHhcC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDA----SFKVVLLESRDRVGGRVHTDYS--FGFPVDLGASWLHGVCQENPLAPVISRLG  101 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~----G~~V~vlE~~~~~GG~~~s~~~--~g~~~d~G~~~~~~~~~~~~~~~l~~~lg  101 (507)
                      +.++-|||+|+|+|+||.+|-+.    |.+|+|||+.+..||.+.+...  .||..- |+..+.  .....+++|+..+.
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~R-gGR~~~--~~~eclwdLls~IP   78 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIR-GGRMME--FHYECLWDLLSSIP   78 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeec-CCcccc--chhHHHHHHHHhCC
Confidence            56789999999999999999987    5699999999999999866433  366553 333221  23446777777654


Q ss_pred             C
Q 010542          102 L  102 (507)
Q Consensus       102 ~  102 (507)
                      -
T Consensus        79 S   79 (500)
T PF06100_consen   79 S   79 (500)
T ss_pred             C
Confidence            3

>TIGR00275 flavoprotein, HI0933 family

Probab=98.91  E-value=2.8e-08  Score=98.95  Aligned_cols=36  Identities=36%  Similarity=0.657  Sum_probs=34.1

Q ss_pred             EEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           32 IVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        32 ~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      +|||||++||+||..|+++|++|+|+|+++.+|+.+
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~   36 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKL   36 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccc
Confidence            699999999999999999999999999999998865

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK09897 hypothetical protein; Provisional

Probab=98.90  E-value=2.9e-08  Score=100.97  Aligned_cols=42  Identities=21%  Similarity=0.426  Sum_probs=36.0

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCC--CeEEEEecCCCCC-ceeEe
Q 010542           28 SPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVG-GRVHT   69 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~~~G-G~~~s   69 (507)
                      +++|+|||||.+|+++|.+|.+.+  .+|+|||++..+| |...+
T Consensus         1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays   45 (534)
T PRK09897          1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYS   45 (534)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeec
Confidence            468999999999999999998864  5899999999888 55444

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.89  E-value=1e-07  Score=99.45  Aligned_cols=44  Identities=32%  Similarity=0.441  Sum_probs=40.5

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      ....+||+|||+|.+|++||+.++++|++|+|+||.+.+||.+.
T Consensus         9 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~   52 (581)
T PRK06134          9 PDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTA   52 (581)
T ss_pred             CCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence            46689999999999999999999999999999999998898753

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=98.87  E-value=4.1e-08  Score=96.55  Aligned_cols=235  Identities=17%  Similarity=0.160  Sum_probs=119.3

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccC---------------------CCeeeecCCce
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS---------------------FGFPVDLGASW   83 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~---------------------~g~~~d~G~~~   83 (507)
                      +++.+||+|+|-|+.-...|..|++.|++|+.+|+++..||...|...                     ..+.+|+-+..
T Consensus         1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKl   80 (438)
T PF00996_consen    1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKL   80 (438)
T ss_dssp             --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--B
T ss_pred             CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHh
Confidence            356899999999999999999999999999999999999999888541                     13568887777


Q ss_pred             eeCCCCCCchHHHHHhcCCCee---eecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHH-HHHHHHH
Q 010542           84 LHGVCQENPLAPVISRLGLPLY---RTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQEL-VTKVGEA  159 (507)
Q Consensus        84 ~~~~~~~~~~~~l~~~lg~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  159 (507)
                      +.   ....+.+++-+.++..+   ..-... .++.++...                 ..-......+.... .-..+..
T Consensus        81 l~---a~g~LV~lLi~S~V~rYLEFk~V~~~-~v~~~~~l~-----------------kVP~sr~dvf~s~~lsl~eKR~  139 (438)
T PF00996_consen   81 LY---ARGPLVKLLISSGVTRYLEFKAVDGS-YVYKNGKLH-----------------KVPCSREDVFKSKLLSLFEKRR  139 (438)
T ss_dssp             EE---TTSHHHHHHHHCTGGGGSEEEEESEE-EEEETTEEE-----------------E--SSHHHHHC-TTS-HHHHHH
T ss_pred             hh---ccCHHHHHHHhCCcccceEEEEccee-EEEeCCEEe-----------------eCCCCHHHhhcCCCccHHHHHH
Confidence            75   45567777777776521   111111 111111000                 00000000000010 0111233


Q ss_pred             HHHHHHHHHHHhhc--------CCCCCcHHHHHHHHhccChhHHhhhhHHHHHHHHHHhhhccccCCcccccccccC---
Q 010542          160 FESILKETDKVREE--------HDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWD---  228 (507)
Q Consensus       160 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~---  228 (507)
                      +.+|+..+......        .....++.+++..          .++++...+.+...++.....+-...+.....   
T Consensus       140 lmkFl~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~----------f~L~~~~~~~i~haiaL~~~~~~~~~p~~~~l~ri  209 (438)
T PF00996_consen  140 LMKFLKFVANYEEDDPSTHKGLDPEKKTFQELLKK----------FGLSENLIDFIGHAIALSLDDSYLTEPAREGLERI  209 (438)
T ss_dssp             HHHHHHHHHHGCTTBGGGSTTG-TTTSBHHHHHHH----------TTS-HHHHHHHHHHTS-SSSSGGGGSBSHHHHHHH
T ss_pred             HHHHHHHHhhcccCCcchhhccccccccHHHHHHh----------cCCCHHHHHHHHHhhhhccCcccccccHHHHHHHH
Confidence            45555555443321        2235677777653          35655555544332222111110000001000   


Q ss_pred             c------cccccCCccccccchHHHHHHHhc-----cCCcccCceeEEEEeeCC-cEE-EEEcCCcEEEcCEEEEe
Q 010542          229 K------EELLPGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYI-GVK-VTVEGGKTFVADAVVVA  291 (507)
Q Consensus       229 ~------~~~~~~~~~~~~~G~~~l~~~l~~-----g~~i~~~~~V~~I~~~~~-~v~-v~~~~g~~~~ad~VI~a  291 (507)
                      .      -.+..+..-++.-|...|.+++.+     |+...+|++|.+|..+.+ ++. |. .+|++++|++||..
T Consensus       210 ~~yl~SlgryG~sPfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~-s~ge~v~~k~vI~d  284 (438)
T PF00996_consen  210 KLYLSSLGRYGKSPFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVK-SEGEVVKAKKVIGD  284 (438)
T ss_dssp             HHHHHHHCCCSSSSEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEE-ETTEEEEESEEEEE
T ss_pred             HHHHHHHhccCCCCEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEe-cCCEEEEcCEEEEC
Confidence            0      011122344666788888888864     889999999999998654 443 44 47889999999954

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PRK07121 hypothetical protein; Validated

Probab=98.87  E-value=7.8e-08  Score=98.72  Aligned_cols=41  Identities=34%  Similarity=0.505  Sum_probs=38.4

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ..+||+|||||++||+||+.++++|.+|+|+||....||..
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s   59 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGAT   59 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcc
Confidence            57899999999999999999999999999999999888854

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.87  E-value=3.1e-08  Score=98.02  Aligned_cols=44  Identities=45%  Similarity=0.586  Sum_probs=40.3

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEe
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT   69 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s   69 (507)
                      .+..+|+|||||.|||++|.+|.+.|++|+||||++.+||.-.-
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y   47 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKY   47 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEee
Confidence            45789999999999999999999999999999999999996543

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.86  E-value=4.2e-08  Score=83.90  Aligned_cols=48  Identities=31%  Similarity=0.481  Sum_probs=38.5

Q ss_pred             HHHHHhccCCcc-cCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCc
Q 010542          247 VINTLAKGLDIR-LGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL  294 (507)
Q Consensus       247 l~~~l~~g~~i~-~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~  294 (507)
                      +.+.+..|++|. ...+|+.|...++++.|.+++|..+.||+||+|++.
T Consensus       107 ~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  107 LLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             HHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence            334444466443 477999999999999999999999999999999974

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.86  E-value=2.7e-08  Score=104.39  Aligned_cols=39  Identities=33%  Similarity=0.515  Sum_probs=35.8

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG   65 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG   65 (507)
                      ..+||+|||||+|||+||..+++.|.+|+|+||...+|+
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~   72 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRR   72 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence            468999999999999999999999999999999777754

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.86  E-value=2e-08  Score=102.65  Aligned_cols=40  Identities=40%  Similarity=0.615  Sum_probs=34.1

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      ++|+|||||++||+||..|.+.|++|++||+++.+||--+
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~   41 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWR   41 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCe
Confidence            6899999999999999999999999999999999999653

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.86  E-value=3.2e-07  Score=90.19  Aligned_cols=37  Identities=32%  Similarity=0.662  Sum_probs=34.2

Q ss_pred             eEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCce
Q 010542           30 SVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGR   66 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~   66 (507)
                      ||+|||||++||++|+.|+++  |++|+|+|+.+..||.
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~   39 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN   39 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence            799999999999999999987  9999999998877763

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.85  E-value=6.4e-08  Score=97.27  Aligned_cols=39  Identities=21%  Similarity=0.402  Sum_probs=34.9

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR   66 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~   66 (507)
                      ..+||+|||+|.|||+||..++ +|.+|+|+||.+..||.
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~   41 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN   41 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence            4689999999999999999985 69999999999887774

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.85  E-value=9.7e-08  Score=97.44  Aligned_cols=42  Identities=31%  Similarity=0.418  Sum_probs=39.2

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ...+||+|||||++|++||++|++.|++|+|+|+++.+||.|
T Consensus         3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~   44 (461)
T PRK05249          3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGC   44 (461)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccc
Confidence            356999999999999999999999999999999988999976

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.84  E-value=6.4e-08  Score=100.07  Aligned_cols=41  Identities=29%  Similarity=0.464  Sum_probs=37.5

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR   66 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~   66 (507)
                      ...+||+|||||+|||+||..+++.|.+|+|+||....||.
T Consensus        14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~   54 (541)
T PRK07804         14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGS   54 (541)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCc
Confidence            45799999999999999999999999999999998877763

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.82  E-value=2.5e-07  Score=95.93  Aligned_cols=41  Identities=34%  Similarity=0.637  Sum_probs=38.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      .++||+|||+|.+||+||+.|+++|.+|+|||+....||.+
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~   45 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST   45 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence            47899999999999999999999999999999998888864

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.82  E-value=2e-07  Score=95.96  Aligned_cols=41  Identities=34%  Similarity=0.579  Sum_probs=37.6

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      +.++||+||||| +||+||+.+++.|.+|+|+||....||.+
T Consensus         5 d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t   45 (513)
T PRK12837          5 DEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT   45 (513)
T ss_pred             CCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence            347899999999 99999999999999999999998888854

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.82  E-value=1.3e-07  Score=96.55  Aligned_cols=42  Identities=29%  Similarity=0.483  Sum_probs=38.3

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      ...|||+|||||.+|++||.+|++.|++|+|+|+. .+||.|.
T Consensus         2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~   43 (472)
T PRK05976          2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCL   43 (472)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceE
Confidence            35799999999999999999999999999999995 8899764

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.82  E-value=1.2e-07  Score=99.05  Aligned_cols=43  Identities=33%  Similarity=0.503  Sum_probs=39.7

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      ...+||+|||||++||+||+.++++|.+|+|+||....||.+.
T Consensus         7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~   49 (574)
T PRK12842          7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA   49 (574)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccc
Confidence            4578999999999999999999999999999999999998753

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.80  E-value=1.4e-07  Score=95.62  Aligned_cols=40  Identities=43%  Similarity=0.571  Sum_probs=37.3

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      .|||+|||||++|++||..+++.|++|+|+|+ +.+||.|.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~   41 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCV   41 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceee
Confidence            58999999999999999999999999999999 58999763

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.80  E-value=1e-07  Score=97.83  Aligned_cols=38  Identities=26%  Similarity=0.620  Sum_probs=34.7

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR   66 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~   66 (507)
                      ..||+|||+|+|||+||..+++ |.+|+|+||....||.
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~   40 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSN   40 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCC
Confidence            6799999999999999999976 8999999998877774

>PRK12839 hypothetical protein; Provisional

Probab=98.79  E-value=2.7e-07  Score=95.73  Aligned_cols=44  Identities=30%  Similarity=0.470  Sum_probs=40.3

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      ....+||+|||+|.+||+||+.|+++|.+|+|+||...+||.+.
T Consensus         5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~   48 (572)
T PRK12839          5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATA   48 (572)
T ss_pred             cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence            34679999999999999999999999999999999999999763

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=98.78  E-value=1e-06  Score=83.65  Aligned_cols=36  Identities=44%  Similarity=0.794  Sum_probs=33.1

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      +.+|+||||||+||++|..|.++|++|+|+|++..+
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~   37 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP   37 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            578999999999999999999999999999997543

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.77  E-value=7.8e-08  Score=97.95  Aligned_cols=40  Identities=38%  Similarity=0.483  Sum_probs=36.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC-CCCCce
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR-DRVGGR   66 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~-~~~GG~   66 (507)
                      ..+||+|||||.||+.||+.+++.|++|+|+|++ +.+|+.
T Consensus         3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m   43 (618)
T PRK05192          3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM   43 (618)
T ss_pred             ccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence            4699999999999999999999999999999997 467653

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.76  E-value=1.1e-07  Score=97.94  Aligned_cols=43  Identities=21%  Similarity=0.205  Sum_probs=38.1

Q ss_pred             cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          254 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       254 g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      |++++++++|++|...++.+.|++.+|+++.||.||+|++...
T Consensus       280 gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~  322 (517)
T PRK15317        280 DVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARW  322 (517)
T ss_pred             CCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCc
Confidence            7889999999999998788888888888999999999999743

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.75  E-value=1.6e-07  Score=95.67  Aligned_cols=42  Identities=33%  Similarity=0.458  Sum_probs=38.8

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ..++||+|||||.+|++||..|++.|++|+|+|+.+.+||.|
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c   43 (471)
T PRK06467          2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVC   43 (471)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccc
Confidence            346999999999999999999999999999999988899965

>TIGR00551 nadB L-aspartate oxidase

Probab=98.75  E-value=1.7e-07  Score=95.94  Aligned_cols=38  Identities=42%  Similarity=0.565  Sum_probs=34.7

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR   66 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~   66 (507)
                      .+||+|||||+|||+||..+++.|. |+|+||.+..||.
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~   39 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGN   39 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCc
Confidence            4799999999999999999999998 9999998777774

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.75  E-value=1.2e-07  Score=94.23  Aligned_cols=36  Identities=36%  Similarity=0.578  Sum_probs=33.6

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      +.+||+|||||++||++|..|+++|++|+|+|+++.
T Consensus         1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             CCceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            358999999999999999999999999999999874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.75  E-value=1.5e-07  Score=98.79  Aligned_cols=39  Identities=31%  Similarity=0.329  Sum_probs=35.7

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG   65 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG   65 (507)
                      ..+||+|||||+|||+||..+++.|.+|+|+||....||
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g   45 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA   45 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence            468999999999999999999999999999999876555

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.75  E-value=4.1e-07  Score=94.78  Aligned_cols=42  Identities=26%  Similarity=0.469  Sum_probs=38.6

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR   66 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~   66 (507)
                      ....+||+|||+|++||+||+.++++|.+|+||||....||.
T Consensus         8 ~~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~   49 (584)
T PRK12835          8 FDREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS   49 (584)
T ss_pred             ccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence            345799999999999999999999999999999999988884

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.74  E-value=5.9e-07  Score=93.28  Aligned_cols=42  Identities=29%  Similarity=0.492  Sum_probs=38.7

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ..++||+|||+|.+|++||..++++|.+|+||||...+||.+
T Consensus         5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~   46 (557)
T PRK07843          5 VQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGST   46 (557)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccc
Confidence            357999999999999999999999999999999998888854

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.74  E-value=3.5e-07  Score=95.01  Aligned_cols=41  Identities=44%  Similarity=0.754  Sum_probs=38.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC--CCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD--RVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~--~~GG~~   67 (507)
                      ..+||+|||+|.+||+||..++++|.+|+|+||.+  ..||.+
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s   45 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQA   45 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCce
Confidence            57899999999999999999999999999999998  788865

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.74  E-value=1.2e-07  Score=97.55  Aligned_cols=42  Identities=29%  Similarity=0.319  Sum_probs=37.6

Q ss_pred             cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542          254 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       254 g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      |++++++++|++|..+++.+.+++.+|+++.+|+||+|++..
T Consensus       281 gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~  322 (515)
T TIGR03140       281 PIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGAR  322 (515)
T ss_pred             CCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence            788999999999998877788888888889999999999975

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=9.3e-08  Score=90.33  Aligned_cols=40  Identities=40%  Similarity=0.605  Sum_probs=33.9

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCe-EEEEecCCCCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFK-VVLLESRDRVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~-V~vlE~~~~~GG~~   67 (507)
                      +.+||+|||||++||+||.+++++|.+ ++|+|+ ..+||..
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~~   42 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQL   42 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCcc
Confidence            579999999999999999999999998 555555 6777654

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.73  E-value=1.7e-07  Score=97.85  Aligned_cols=39  Identities=21%  Similarity=0.465  Sum_probs=34.5

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCC--CeEEEEecCCCCCce
Q 010542           28 SPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVGGR   66 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~~~GG~   66 (507)
                      .+||+|||||++||+||+.++++|  .+|+|+||....||.
T Consensus         3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~   43 (575)
T PRK05945          3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSH   43 (575)
T ss_pred             cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchh
Confidence            579999999999999999999874  799999998776663

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.72  E-value=3e-07  Score=93.47  Aligned_cols=34  Identities=29%  Similarity=0.470  Sum_probs=32.2

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ++||+|||||++||+||..+++.|.+|+|+||..
T Consensus         1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~   34 (466)
T PRK08401          1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI   34 (466)
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            4899999999999999999999999999999974

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.71  E-value=2.3e-07  Score=94.69  Aligned_cols=40  Identities=30%  Similarity=0.408  Sum_probs=36.8

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      +++||+|||||++|++||.+|++.|++|+|+|+ ..+||.|
T Consensus         3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~-~~~GG~c   42 (466)
T PRK07818          3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEK-KYWGGVC   42 (466)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCce
Confidence            369999999999999999999999999999998 5788876

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.71  E-value=3.5e-07  Score=93.38  Aligned_cols=40  Identities=38%  Similarity=0.510  Sum_probs=37.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ..|||+|||||.+|++||..|++.|++|+|+|+.. +||.|
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c   42 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTC   42 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccce
Confidence            56999999999999999999999999999999976 89966

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.71  E-value=2.1e-07  Score=93.19  Aligned_cols=53  Identities=15%  Similarity=0.233  Sum_probs=40.2

Q ss_pred             HHHHHHhc--cCCcccCceeEEEEeeCCcEEEEEc---CCcEEEcCEEEEecCchhhc
Q 010542          246 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVE---GGKTFVADAVVVAVPLGVLK  298 (507)
Q Consensus       246 ~l~~~l~~--g~~i~~~~~V~~I~~~~~~v~v~~~---~g~~~~ad~VI~a~p~~~~~  298 (507)
                      .|.+++.+  +++++++++|+++..+++++.+++.   +++++++|.||-|-+.+...
T Consensus       112 ~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~v  169 (400)
T PRK06475        112 ALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSML  169 (400)
T ss_pred             HHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHhH
Confidence            34455543  6789999999999988888877653   34578999999999876543

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.69  E-value=2.7e-07  Score=95.33  Aligned_cols=41  Identities=27%  Similarity=0.353  Sum_probs=36.3

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR   66 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~   66 (507)
                      ....+||+|||||+|||+||..++ .|.+|+|+||....||.
T Consensus         6 ~~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~   46 (553)
T PRK07395          6 LPSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSA   46 (553)
T ss_pred             ccccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCc
Confidence            356799999999999999999996 59999999999887774

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.69  E-value=2.2e-07  Score=96.45  Aligned_cols=42  Identities=29%  Similarity=0.521  Sum_probs=37.7

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      ...+||+|||||++||+||.+|++.|++|+|+|+ ..+||.+.
T Consensus         2 ~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~-~~~GG~~~   43 (555)
T TIGR03143         2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEK-DDFGGQIT   43 (555)
T ss_pred             CCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEec-CCCCceEE
Confidence            3469999999999999999999999999999999 47888764

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.68  E-value=9.3e-07  Score=92.27  Aligned_cols=43  Identities=44%  Similarity=0.548  Sum_probs=39.5

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      ..++||+|||+|.+||+||+.++++|++|+|+||.+.+||.+.
T Consensus        14 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~   56 (578)
T PRK12843         14 DAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA   56 (578)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence            4578999999999999999999999999999999999999653

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.68  E-value=4.3e-07  Score=94.71  Aligned_cols=40  Identities=30%  Similarity=0.336  Sum_probs=36.4

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR   66 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~   66 (507)
                      ..+||+|||||+|||+||..+++.|.+|+|+||....||.
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~   45 (588)
T PRK08958          6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH   45 (588)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence            4689999999999999999999999999999998776663

>PLN02815 L-aspartate oxidase

Probab=98.67  E-value=3.5e-07  Score=94.98  Aligned_cols=39  Identities=21%  Similarity=0.371  Sum_probs=35.8

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR   66 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~   66 (507)
                      ..+||+|||||++||+||..+++.| +|+|+||....||.
T Consensus        28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~   66 (594)
T PLN02815         28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESN   66 (594)
T ss_pred             cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCc
Confidence            4689999999999999999999999 99999998887773

>PTZ00367 squalene epoxidase; Provisional

Probab=98.66  E-value=4.7e-06  Score=86.00  Aligned_cols=35  Identities=34%  Similarity=0.467  Sum_probs=33.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ..+||+|||||++|+++|+.|+++|++|+|+|++.
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            46899999999999999999999999999999964

>PRK08275 putative oxidoreductase; Provisional

Probab=98.66  E-value=3.5e-07  Score=95.04  Aligned_cols=39  Identities=31%  Similarity=0.473  Sum_probs=34.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCc
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGG   65 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG   65 (507)
                      ..+||+|||||.|||+||..++++  |.+|+|+||....+|
T Consensus         8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~   48 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRS   48 (554)
T ss_pred             EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCC
Confidence            468999999999999999999987  689999999876433

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.65  E-value=7.7e-07  Score=93.00  Aligned_cols=40  Identities=25%  Similarity=0.449  Sum_probs=36.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCC---CeEEEEecCCCCCce
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDAS---FKVVLLESRDRVGGR   66 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G---~~V~vlE~~~~~GG~   66 (507)
                      ..+||+|||||+|||+||..++++|   .+|+|+||....||.
T Consensus         4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~   46 (577)
T PRK06069          4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSH   46 (577)
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCC
Confidence            4689999999999999999999998   899999998877664

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.65  E-value=7.2e-07  Score=88.79  Aligned_cols=42  Identities=40%  Similarity=0.588  Sum_probs=39.3

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      .++||++|||||.+|.+||.++++.|.+|.|+|+...+||-|
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtC   43 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTC   43 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceE
Confidence            467999999999999999999999999999999987999976

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.65  E-value=2.9e-07  Score=94.60  Aligned_cols=35  Identities=29%  Similarity=0.406  Sum_probs=31.4

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ....||+|||||++||+||..++  |.+|+|+||...
T Consensus         7 ~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~   41 (513)
T PRK07512          7 ILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL   41 (513)
T ss_pred             CCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence            35789999999999999999997  569999999876

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.64  E-value=9.5e-07  Score=92.51  Aligned_cols=38  Identities=29%  Similarity=0.487  Sum_probs=34.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVG   64 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~G   64 (507)
                      ..+||+|||||+|||+||..+++.  |.+|+|+||....+
T Consensus        10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~   49 (608)
T PRK06854         10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKR   49 (608)
T ss_pred             eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCC
Confidence            458999999999999999999998  99999999987543

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.63  E-value=1.1e-06  Score=91.87  Aligned_cols=41  Identities=27%  Similarity=0.371  Sum_probs=36.9

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR   66 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~   66 (507)
                      ...+||+|||||.|||+||..+++.|.+|+|+||....||.
T Consensus        10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~   50 (591)
T PRK07057         10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSH   50 (591)
T ss_pred             cccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCC
Confidence            45689999999999999999999999999999998776663

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.62  E-value=4.8e-07  Score=94.54  Aligned_cols=35  Identities=37%  Similarity=0.519  Sum_probs=32.3

Q ss_pred             EEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542           31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG   65 (507)
Q Consensus        31 v~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG   65 (507)
                      |+|||||+|||+||..+++.|.+|+|+||...+||
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~   35 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRR   35 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCC
Confidence            69999999999999999999999999999886654

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.62  E-value=1.2e-06  Score=91.63  Aligned_cols=40  Identities=25%  Similarity=0.346  Sum_probs=36.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR   66 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~   66 (507)
                      ..+||+|||||++||+||..+++.|.+|+|+||....||.
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~   50 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH   50 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence            4689999999999999999999999999999997766553

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.62  E-value=6.9e-07  Score=93.15  Aligned_cols=40  Identities=30%  Similarity=0.404  Sum_probs=35.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCce
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGR   66 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~   66 (507)
                      ..+||+|||||+|||+||..+++.  |.+|+|+||....||.
T Consensus         3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~   44 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSH   44 (582)
T ss_pred             eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCC
Confidence            458999999999999999999987  4799999998777763

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.60  E-value=9e-07  Score=92.09  Aligned_cols=40  Identities=33%  Similarity=0.404  Sum_probs=35.6

Q ss_pred             CCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCcee
Q 010542           28 SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRV   67 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~~   67 (507)
                      .+||+|||||+|||+||..++++  |.+|+|+||....||.+
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s   44 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT   44 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence            57999999999999999999987  57999999988777743

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.59  E-value=8.4e-07  Score=89.65  Aligned_cols=34  Identities=47%  Similarity=0.687  Sum_probs=30.5

Q ss_pred             EECccHHHHHHHHHHHhCCCeEEEEecCCC--CCce
Q 010542           33 VIGAGMAGVAAARALHDASFKVVLLESRDR--VGGR   66 (507)
Q Consensus        33 IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~--~GG~   66 (507)
                      |||+|++||+||+.++++|.+|+|+||.+.  .||.
T Consensus         1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~   36 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGN   36 (432)
T ss_pred             CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcC
Confidence            799999999999999999999999999874  4553

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.58  E-value=1.6e-07  Score=90.67  Aligned_cols=42  Identities=33%  Similarity=0.290  Sum_probs=34.2

Q ss_pred             cCCcccCceeEEEEeeCCcEE-EEEcCCcEEEcCEEEEecCchh
Q 010542          254 GLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       254 g~~i~~~~~V~~I~~~~~~v~-v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      +++|. ..+|++|..+++++. |.+.+|+.+.+|.||+|+++..
T Consensus       110 nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGtfl  152 (392)
T PF01134_consen  110 NLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGTFL  152 (392)
T ss_dssp             TEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTTGB
T ss_pred             CeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEeccccc
Confidence            56774 678999999998876 8899999999999999998843

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.56  E-value=1.1e-06  Score=98.68  Aligned_cols=42  Identities=36%  Similarity=0.605  Sum_probs=39.0

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ....||+|||+|.+||+||...+++|.+|+|+||....||.+
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s  448 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNS  448 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCch
Confidence            357999999999999999999999999999999999999854

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.55  E-value=1.6e-06  Score=90.55  Aligned_cols=40  Identities=28%  Similarity=0.344  Sum_probs=36.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR   66 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~   66 (507)
                      ++.||+|||||+|||+||..++++|.+|+|+||....||.
T Consensus         2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~   41 (589)
T PRK08641          2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH   41 (589)
T ss_pred             CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence            3569999999999999999999999999999998876663

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.54  E-value=3.2e-07  Score=91.32  Aligned_cols=42  Identities=19%  Similarity=0.091  Sum_probs=37.8

Q ss_pred             cCCcccCceeEEEEeeCCcE-EEEEcCCcEEEcCEEEEecCchh
Q 010542          254 GLDIRLGHRVTKITRHYIGV-KVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       254 g~~i~~~~~V~~I~~~~~~v-~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      |+.|..||+|++|....+++ -|+|..| .+++.+||.|++..+
T Consensus       201 GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWA  243 (856)
T KOG2844|consen  201 GALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWA  243 (856)
T ss_pred             CcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHH
Confidence            88999999999999887664 5999999 899999999999876

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.53  E-value=7.2e-07  Score=81.23  Aligned_cols=38  Identities=37%  Similarity=0.656  Sum_probs=35.8

Q ss_pred             eEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      .|+|||+|++||+|+..|...|-.|+++|++..+||..
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNS   48 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNS   48 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcc
Confidence            69999999999999999999988899999999999975

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.53  E-value=1.5e-06  Score=91.65  Aligned_cols=39  Identities=26%  Similarity=0.346  Sum_probs=35.7

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG   65 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG   65 (507)
                      ..+||+|||||++||+||..++++|.+|+|+||....+|
T Consensus         4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s   42 (657)
T PRK08626          4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRS   42 (657)
T ss_pred             eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCc
Confidence            468999999999999999999999999999999876655

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=98.52  E-value=1.1e-05  Score=74.31  Aligned_cols=39  Identities=28%  Similarity=0.409  Sum_probs=34.4

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhC----CCeEEEEecCCCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDA----SFKVVLLESRDRV   63 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~----G~~V~vlE~~~~~   63 (507)
                      .+...||+|||||.+|+++||.|.++    |++|+|+|+++..
T Consensus        83 f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty  125 (509)
T KOG2853|consen   83 FPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY  125 (509)
T ss_pred             cccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence            45689999999999999999999864    7999999998754

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.51  E-value=4.1e-06  Score=87.58  Aligned_cols=38  Identities=24%  Similarity=0.273  Sum_probs=33.7

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG   65 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG   65 (507)
                      ..+||+|||||++||+||+.+++. .+|+|+||....||
T Consensus         4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g   41 (583)
T PRK08205          4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS   41 (583)
T ss_pred             eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence            468999999999999999999986 89999999775555

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.47  E-value=1.9e-07  Score=101.67  Aligned_cols=43  Identities=30%  Similarity=0.530  Sum_probs=40.5

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      ...++|+|||||+|||+||++|+++|++|+|||+.+++||.++
T Consensus       304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~  346 (944)
T PRK12779        304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR  346 (944)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence            3578999999999999999999999999999999999999875

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.44  E-value=4.2e-06  Score=86.62  Aligned_cols=40  Identities=28%  Similarity=0.420  Sum_probs=35.7

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR   66 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~   66 (507)
                      ...+||+|||+|++||+||..+++. .+|+|+||....||.
T Consensus         6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~   45 (536)
T PRK09077          6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS   45 (536)
T ss_pred             cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence            3568999999999999999999986 899999998877774

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.43  E-value=2.6e-07  Score=99.81  Aligned_cols=44  Identities=36%  Similarity=0.552  Sum_probs=40.7

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEe
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT   69 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s   69 (507)
                      .+.++|+|||||+|||+||++|++.|++|+|||+.+.+||.++.
T Consensus       535 ~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~  578 (1012)
T TIGR03315       535 SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN  578 (1012)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence            35689999999999999999999999999999999999998854

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12831 putative oxidoreductase; Provisional

Probab=98.42  E-value=3.7e-07  Score=92.62  Aligned_cols=44  Identities=30%  Similarity=0.520  Sum_probs=41.0

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      ..+.+||+|||||++||+||++|++.|++|+|+|+++.+||.+.
T Consensus       137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  180 (464)
T PRK12831        137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV  180 (464)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence            45789999999999999999999999999999999999999874

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.42  E-value=9.4e-06  Score=78.80  Aligned_cols=41  Identities=20%  Similarity=0.395  Sum_probs=36.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~~   67 (507)
                      +.+||++|||||.|.+.++.|++.  ..+|.|+|+.+.++.-.
T Consensus         2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~ES   44 (488)
T PF06039_consen    2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALES   44 (488)
T ss_pred             CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhhc
Confidence            579999999999999999999986  57999999998876644

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.39  E-value=5.3e-07  Score=90.75  Aligned_cols=44  Identities=27%  Similarity=0.317  Sum_probs=40.1

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHh--CCCeEEEEecCCCCCceeEe
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHD--ASFKVVLLESRDRVGGRVHT   69 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~--~G~~V~vlE~~~~~GG~~~s   69 (507)
                      ....+|+|||||+|||+||+.|++  .|++|+|||+.+.+||.++.
T Consensus        24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~   69 (491)
T PLN02852         24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS   69 (491)
T ss_pred             CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence            456789999999999999999997  69999999999999998764

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.38  E-value=3.5e-07  Score=93.10  Aligned_cols=41  Identities=34%  Similarity=0.502  Sum_probs=38.6

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ++|||+|||||.+|++||.++++.|++|+|+|+++.+||.|
T Consensus         2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c   42 (466)
T PRK06115          2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTC   42 (466)
T ss_pred             CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeee
Confidence            35899999999999999999999999999999888999986

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.36  E-value=1.3e-05  Score=81.77  Aligned_cols=39  Identities=26%  Similarity=0.451  Sum_probs=35.7

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      +.||+|||||.+|++||..|++.|++|+|+|+. .+||.|
T Consensus         1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c   39 (466)
T PRK07845          1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAA   39 (466)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcc
Confidence            468999999999999999999999999999985 588876

>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1

Probab=98.36  E-value=8.4e-05  Score=72.20  Aligned_cols=102  Identities=23%  Similarity=0.249  Sum_probs=69.4

Q ss_pred             hHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCc-cccccCCccccccchHHHHHHHhc--cCCcccCceeEEE-E
Q 010542          193 ELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDK-EELLPGGHGLMVRGYLPVINTLAK--GLDIRLGHRVTKI-T  267 (507)
Q Consensus       193 ~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~-~~~~~~~~~~~~~G~~~l~~~l~~--g~~i~~~~~V~~I-~  267 (507)
                      ++...++++.+++.++.+. +.-|+.+. ++....... ..-..++.+.+.||..++.+.|.+  +.++ +|++|++| .
T Consensus        75 ~L~~~gi~~~fi~Elv~a~tRvNYgQ~~-~i~a~~G~vSla~a~~gl~sV~GGN~qI~~~ll~~S~A~v-l~~~Vt~I~~  152 (368)
T PF07156_consen   75 YLKENGISERFINELVQAATRVNYGQNV-NIHAFAGLVSLAGATGGLWSVEGGNWQIFEGLLEASGANV-LNTTVTSITR  152 (368)
T ss_pred             HHHHCCCCHHHHHHHHHhheEeeccccc-chhhhhhheeeeeccCCceEecCCHHHHHHHHHHHccCcE-ecceeEEEEe
Confidence            3556788888888887775 45677753 333322221 111346677899999999999976  8899 99999999 4


Q ss_pred             eeCCc---EEEEEcC--C-cEEEcCEEEEecCchh
Q 010542          268 RHYIG---VKVTVEG--G-KTFVADAVVVAVPLGV  296 (507)
Q Consensus       268 ~~~~~---v~v~~~~--g-~~~~ad~VI~a~p~~~  296 (507)
                      ..+++   +.|++.+  + ....+|.||+|+|...
T Consensus       153 ~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~  187 (368)
T PF07156_consen  153 RSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQ  187 (368)
T ss_pred             ccCCCceeEEEEEecCCCCccccCCEEEECCCccc
Confidence            44443   3455443  2 2346799999999964

8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.35  E-value=4.5e-07  Score=92.61  Aligned_cols=41  Identities=34%  Similarity=0.506  Sum_probs=38.1

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEe
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT   69 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s   69 (507)
                      .+||+|||||++|++||++|++.|++|+|+|+ +.+||.|..
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~   41 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLN   41 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceee
Confidence            48999999999999999999999999999999 899998753

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.35  E-value=4.2e-07  Score=87.31  Aligned_cols=43  Identities=49%  Similarity=0.752  Sum_probs=40.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEe
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT   69 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s   69 (507)
                      ...+++|||||++|++||..|++.|++|.++||++.+||++..
T Consensus       123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak  165 (622)
T COG1148         123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAK  165 (622)
T ss_pred             hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHh
Confidence            4678999999999999999999999999999999999999754

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.35  E-value=5.3e-07  Score=91.34  Aligned_cols=42  Identities=38%  Similarity=0.449  Sum_probs=38.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC-CCceeE
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR-VGGRVH   68 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~-~GG~~~   68 (507)
                      +.+||+|||||.+|++||..|++.|++|+|+|+++. +||.|.
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~   44 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI   44 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence            369999999999999999999999999999999864 699763

>PRK06116 glutathione reductase; Validated

Probab=98.34  E-value=4.6e-07  Score=92.10  Aligned_cols=40  Identities=38%  Similarity=0.610  Sum_probs=37.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ..+||+|||||++|++||..|++.|++|+|+|+. .+||-|
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c   42 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTC   42 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhh
Confidence            4699999999999999999999999999999995 899966

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.33  E-value=4.8e-07  Score=91.66  Aligned_cols=41  Identities=32%  Similarity=0.579  Sum_probs=37.5

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      +.+||+|||||.+|++||..|++.|++|+|+|+ +.+||.|.
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~-~~~GG~c~   41 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEA-KKLGGTCV   41 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecc-ccccccee
Confidence            469999999999999999999999999999999 57899763

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.33  E-value=5.8e-07  Score=91.13  Aligned_cols=42  Identities=31%  Similarity=0.492  Sum_probs=38.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC-CCCceeE
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD-RVGGRVH   68 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~-~~GG~~~   68 (507)
                      +.+||+|||||.+|++||++|++.|++|+|+|+.+ .+||.|.
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~   44 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCI   44 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEe
Confidence            46999999999999999999999999999999976 5799774

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.33  E-value=1.1e-05  Score=88.62  Aligned_cols=37  Identities=35%  Similarity=0.423  Sum_probs=33.9

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ...+||+|||||.+||+||..+++.|.+|+|+||...
T Consensus        11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         11 RLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             eeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            3468999999999999999999999999999999764

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.32  E-value=6.4e-07  Score=96.44  Aligned_cols=44  Identities=41%  Similarity=0.542  Sum_probs=40.9

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEe
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT   69 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s   69 (507)
                      .+.++|+|||||++||+||++|++.|++|+|+|+.+.+||.++.
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~  580 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN  580 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence            46789999999999999999999999999999999999998754

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=98.32  E-value=1.9e-05  Score=78.45  Aligned_cols=54  Identities=17%  Similarity=0.191  Sum_probs=44.7

Q ss_pred             hHHHHHHHhccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhh
Q 010542          244 YLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL  297 (507)
Q Consensus       244 ~~~l~~~l~~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~  297 (507)
                      ...+.+++.+|++++.+++|++|+.+++++.|++.+|..+.+|+||+|+++...
T Consensus       138 ~~~l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~  191 (381)
T TIGR03197       138 CRALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAG  191 (381)
T ss_pred             HHHHHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccc
Confidence            344555555588999999999999988888899988977999999999998753

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PRK06370 mercuric reductase; Validated

Probab=98.29  E-value=8.4e-07  Score=90.49  Aligned_cols=43  Identities=37%  Similarity=0.465  Sum_probs=38.0

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      +..++||+|||||++|++||.+|++.|++|+|+|+. .+||.|.
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~   44 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCV   44 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence            456799999999999999999999999999999995 6777653

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.29  E-value=1.3e-05  Score=81.86  Aligned_cols=39  Identities=38%  Similarity=0.382  Sum_probs=34.4

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      +||+|||||++|+.||+.+++.|.+|+|+|++...+|.+
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~   39 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKC   39 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCC
Confidence            699999999999999999999999999999975544443

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.28  E-value=8.4e-07  Score=90.54  Aligned_cols=41  Identities=44%  Similarity=0.541  Sum_probs=37.9

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      +++||+|||||.+|++||.+|++.|++|+|+|+ +.+||.|.
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~   42 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL   42 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence            469999999999999999999999999999999 78999763

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.28  E-value=6.5e-07  Score=90.03  Aligned_cols=38  Identities=47%  Similarity=0.621  Sum_probs=32.9

Q ss_pred             eEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ||+|||||++|++||+.+++.|.+|+|+|+.+.+||..
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~   38 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMA   38 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGG
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcc
Confidence            89999999999999999999999999999999999965

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.27  E-value=9.1e-07  Score=83.37  Aligned_cols=44  Identities=32%  Similarity=0.580  Sum_probs=38.9

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhC------CCeEEEEecCCCCCceeEe
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDA------SFKVVLLESRDRVGGRVHT   69 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~------G~~V~vlE~~~~~GG~~~s   69 (507)
                      ...+||+|||||.+||+||.+|.+.      -.+|+|+||...+||.+-|
T Consensus        74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS  123 (621)
T KOG2415|consen   74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS  123 (621)
T ss_pred             hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceec
Confidence            5679999999999999999999763      3689999999999998755

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.27  E-value=1.7e-06  Score=85.89  Aligned_cols=44  Identities=25%  Similarity=0.286  Sum_probs=39.5

Q ss_pred             CCCCeEEEECccHHHHHHHHHHH-hCCCeEEEEecCCCCCceeEe
Q 010542           26 ARSPSVIVIGAGMAGVAAARALH-DASFKVVLLESRDRVGGRVHT   69 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~-~~G~~V~vlE~~~~~GG~~~s   69 (507)
                      ....+|+|||||+|||+||.+|+ +.|++|+|||+.+.+||.++.
T Consensus        37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~   81 (506)
T PTZ00188         37 AKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY   81 (506)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence            45678999999999999999765 569999999999999999876

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=98.26  E-value=3.9e-06  Score=76.42  Aligned_cols=44  Identities=30%  Similarity=0.463  Sum_probs=37.7

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCceeEe
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRVHT   69 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~~~s   69 (507)
                      ...+|++||||||.||++|..|.-+  +.+|.|+||...++=...+
T Consensus        46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSg   91 (453)
T KOG2665|consen   46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSG   91 (453)
T ss_pred             cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecc
Confidence            4689999999999999999999866  8999999998877654433

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.26  E-value=1.2e-06  Score=92.99  Aligned_cols=44  Identities=30%  Similarity=0.471  Sum_probs=40.6

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEe
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT   69 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s   69 (507)
                      .+.++|+|||||++||+||+.|++.|++|+|||+.+.+||.++.
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~  368 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF  368 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee
Confidence            35789999999999999999999999999999999999998753

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=98.26  E-value=8.2e-05  Score=72.61  Aligned_cols=53  Identities=23%  Similarity=0.166  Sum_probs=42.2

Q ss_pred             hHHHHHHHh-ccCCcccCceeEEEEeeCCcEE-EEEcCCcEEEcCEEEEecCchhh
Q 010542          244 YLPVINTLA-KGLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGVL  297 (507)
Q Consensus       244 ~~~l~~~l~-~g~~i~~~~~V~~I~~~~~~v~-v~~~~g~~~~ad~VI~a~p~~~~  297 (507)
                      ...+.+.+. .|++++.+++|++|..+++++. |.+.+| ++.||+||+|+++...
T Consensus       140 ~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~  194 (337)
T TIGR02352       140 LKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAG  194 (337)
T ss_pred             HHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhh
Confidence            444555444 3889999999999999888765 777777 8999999999998753

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.25  E-value=1.6e-06  Score=87.87  Aligned_cols=43  Identities=40%  Similarity=0.552  Sum_probs=40.0

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      .+.+||+|||||++||+||+.|++.|++|+|+|+++.+||.+.
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~  173 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT  173 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence            4578999999999999999999999999999999999999764

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.25  E-value=1.1e-06  Score=96.60  Aligned_cols=42  Identities=33%  Similarity=0.459  Sum_probs=39.6

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      +.++|+|||||++||+||++|++.|++|+|||+.+.+||.++
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~  470 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ  470 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence            568999999999999999999999999999999999999875

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.22  E-value=2.3e-05  Score=80.42  Aligned_cols=43  Identities=35%  Similarity=0.437  Sum_probs=38.6

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ...++||+|||||.|||.||..+++.|.+|+|+||....+|.+
T Consensus         3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t   45 (562)
T COG1053           3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHT   45 (562)
T ss_pred             ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCch
Confidence            3567999999999999999999999999999999988777543

>PRK14694 putative mercuric reductase; Provisional

Probab=98.20  E-value=1.7e-06  Score=88.31  Aligned_cols=43  Identities=28%  Similarity=0.426  Sum_probs=39.0

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      .+..+||+|||||++|++||..|++.|++|+|+|+. .+||-|.
T Consensus         3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~   45 (468)
T PRK14694          3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCV   45 (468)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-cccccee
Confidence            356899999999999999999999999999999995 7899764

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.19  E-value=2.1e-06  Score=92.65  Aligned_cols=43  Identities=30%  Similarity=0.533  Sum_probs=40.1

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      ...++|+|||||++||+||++|++.|++|+|||+.+.+||.++
T Consensus       429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  471 (752)
T PRK12778        429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK  471 (752)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            4678999999999999999999999999999999999999864

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=98.19  E-value=2.2e-06  Score=85.52  Aligned_cols=45  Identities=38%  Similarity=0.437  Sum_probs=41.5

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEe
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT   69 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s   69 (507)
                      .....+|+|||||++||+||+.|+++|++|+|+|+.+..||++..
T Consensus       120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y  164 (457)
T COG0493         120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY  164 (457)
T ss_pred             CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence            345589999999999999999999999999999999999999855

>PRK10262 thioredoxin reductase; Provisional

Probab=98.19  E-value=1.9e-06  Score=83.43  Aligned_cols=43  Identities=26%  Similarity=0.468  Sum_probs=38.1

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      ..+.+||+|||||++||+||..|++.|++|+|+|+ ...||.+.
T Consensus         3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~-~~~gg~~~   45 (321)
T PRK10262          3 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLT   45 (321)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEe-ecCCCcee
Confidence            45789999999999999999999999999999996 46788653

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.18  E-value=2.7e-06  Score=86.75  Aligned_cols=43  Identities=42%  Similarity=0.638  Sum_probs=40.0

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      ...++|+|||||++||+||+.|++.|++|+|+|+.+.+||.++
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~  183 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR  183 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence            4568999999999999999999999999999999999999764

>PLN02985 squalene monooxygenase

Probab=98.17  E-value=2.2e-06  Score=87.81  Aligned_cols=40  Identities=33%  Similarity=0.470  Sum_probs=35.8

Q ss_pred             CCCCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           23 KGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        23 ~~~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ......+||+|||||++||++|+.|+++|++|+|+|+...
T Consensus        38 ~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~   77 (514)
T PLN02985         38 ERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR   77 (514)
T ss_pred             cCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence            3356789999999999999999999999999999999643

>PRK14727 putative mercuric reductase; Provisional

Probab=98.17  E-value=2.5e-06  Score=87.21  Aligned_cols=43  Identities=30%  Similarity=0.412  Sum_probs=40.1

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      +..+||+|||||.+|++||..|++.|.+|+|+|+.+.+||.|.
T Consensus        14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~   56 (479)
T PRK14727         14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCV   56 (479)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEec
Confidence            4579999999999999999999999999999999889999874

>TIGR02053 MerA mercuric reductase

Probab=98.17  E-value=1.9e-06  Score=87.87  Aligned_cols=38  Identities=29%  Similarity=0.463  Sum_probs=35.3

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      +||+|||||++|++||.+|++.|++|+|+|+.. +||.|
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c   38 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTC   38 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCe
Confidence            699999999999999999999999999999965 78865

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.17  E-value=2.2e-06  Score=87.59  Aligned_cols=42  Identities=33%  Similarity=0.514  Sum_probs=37.5

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEec------CCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLES------RDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~------~~~~GG~~   67 (507)
                      .+.+|++|||||.+|++||.+|++.|.+|+|+|+      ...+||.|
T Consensus         2 ~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c   49 (475)
T PRK06327          2 SKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTC   49 (475)
T ss_pred             CcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCcc
Confidence            3469999999999999999999999999999998      35678866

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.15  E-value=1.3e-05  Score=81.55  Aligned_cols=43  Identities=23%  Similarity=0.374  Sum_probs=34.6

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEc-CCcEEE--cCEEEEecCch
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVE-GGKTFV--ADAVVVAVPLG  295 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~-~g~~~~--ad~VI~a~p~~  295 (507)
                      .|+++++++.|++|+.+++.+.++.. +|+++.  ||++|+|++..
T Consensus        69 ~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~  114 (444)
T PRK09564         69 SGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGAR  114 (444)
T ss_pred             CCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCC
Confidence            38899999999999988887777642 355666  99999999865

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.14  E-value=2.7e-06  Score=87.18  Aligned_cols=50  Identities=22%  Similarity=0.170  Sum_probs=39.5

Q ss_pred             HHHHHHh-ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542          246 PVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       246 ~l~~~l~-~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      .+.+.|. .|+++++++.|++|...++.+.+.+.+|+++.+|.||++++..
T Consensus       227 ~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~  277 (499)
T PTZ00052        227 KVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRK  277 (499)
T ss_pred             HHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCC
Confidence            3445554 3899999999999987666667777788889999999999754

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.14  E-value=3.5e-06  Score=89.16  Aligned_cols=43  Identities=30%  Similarity=0.519  Sum_probs=40.0

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      ...++|+|||||++||+||+.|++.|++|+|+|+++.+||.++
T Consensus       191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~  233 (652)
T PRK12814        191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR  233 (652)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence            3568999999999999999999999999999999999999874

>TIGR03452 mycothione_red mycothione reductase

Probab=98.14  E-value=3.5e-05  Score=78.22  Aligned_cols=37  Identities=22%  Similarity=0.383  Sum_probs=32.3

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      +||++|||||.+|..||..  +.|++|+|+|+ +.+||-|
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC   38 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTC   38 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCee
Confidence            5899999999999998754  46999999998 6789966

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=98.13  E-value=3e-06  Score=90.29  Aligned_cols=41  Identities=17%  Similarity=0.177  Sum_probs=36.6

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR   66 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~   66 (507)
                      .+.++|+|||||+|||+||++|++.|++|+|+|+.+..|+-
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~  421 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP  421 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence            46789999999999999999999999999999997765553

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.13  E-value=3.3e-06  Score=89.29  Aligned_cols=44  Identities=36%  Similarity=0.542  Sum_probs=40.6

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEe
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT   69 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s   69 (507)
                      .+..+|+|||||++||+||+.|++.|++|+|||+.+.+||.++.
T Consensus       308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~  351 (639)
T PRK12809        308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTF  351 (639)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeec
Confidence            35789999999999999999999999999999999999998753

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.13  E-value=3.6e-06  Score=85.54  Aligned_cols=44  Identities=36%  Similarity=0.546  Sum_probs=40.6

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEe
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT   69 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s   69 (507)
                      .+..+|+|||||++||+||+.|++.|++|+|+|+.+.+||.++.
T Consensus       139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~  182 (467)
T TIGR01318       139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTF  182 (467)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeee
Confidence            35789999999999999999999999999999999999998753

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK13748 putative mercuric reductase; Provisional

Probab=98.12  E-value=2.7e-06  Score=89.16  Aligned_cols=41  Identities=37%  Similarity=0.481  Sum_probs=37.9

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      ..+||+|||||.+|++||..|++.|++|+|+|++ .+||-|.
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~  137 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCV  137 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeecc
Confidence            4699999999999999999999999999999996 8999763

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.12  E-value=3.1e-06  Score=82.69  Aligned_cols=37  Identities=41%  Similarity=0.413  Sum_probs=33.7

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG   64 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~G   64 (507)
                      +.||+|||||++|+.||+.|++.|++|+|+|+.+...
T Consensus         2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~   38 (436)
T PRK05335          2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK   38 (436)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence            5799999999999999999999999999999876543

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.12  E-value=3.7e-06  Score=85.55  Aligned_cols=43  Identities=40%  Similarity=0.665  Sum_probs=39.9

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      ...++|+|||||++||++|+.|++.|++|+|+|+++.+||.+.
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~  180 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR  180 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence            4568999999999999999999999999999999999999764

>PTZ00058 glutathione reductase; Provisional

Probab=98.12  E-value=2.9e-06  Score=87.50  Aligned_cols=41  Identities=39%  Similarity=0.519  Sum_probs=37.9

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ...+||+|||||.+|++||..+++.|.+|+|+|++ .+||.|
T Consensus        46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtC   86 (561)
T PTZ00058         46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTC   86 (561)
T ss_pred             CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccc
Confidence            36799999999999999999999999999999995 799976

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.12  E-value=5.4e-05  Score=73.72  Aligned_cols=36  Identities=25%  Similarity=0.580  Sum_probs=32.5

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCC--CeEEEEecCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDR   62 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~~   62 (507)
                      ++++|+|||||.+||.+|..|.++-  .+|+++|+++.
T Consensus         2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~   39 (405)
T COG1252           2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY   39 (405)
T ss_pred             CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence            4688999999999999999999974  89999999764

>PRK07846 mycothione reductase; Reviewed

Probab=98.12  E-value=5.8e-05  Score=76.55  Aligned_cols=37  Identities=22%  Similarity=0.381  Sum_probs=32.0

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      .||++|||||.+|.+||..  +.|.+|+|+|+ +.+||-|
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC   37 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTC   37 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcc
Confidence            3899999999999999876  45999999998 5788865

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=98.09  E-value=1.1e-06  Score=75.25  Aligned_cols=67  Identities=28%  Similarity=0.553  Sum_probs=50.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLP  103 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~  103 (507)
                      ...||+|||||-+||+|||+++++  ..+|.|+|++--+||.++          +|++.|...--..+..-+++++|++
T Consensus        75 AesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW----------LGGQLFSAMvvRKPAhLFL~Eigvp  143 (328)
T KOG2960|consen   75 AESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW----------LGGQLFSAMVVRKPAHLFLQEIGVP  143 (328)
T ss_pred             hccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc----------ccchhhhhhhhcChHHHHHHHhCCC
Confidence            367999999999999999999976  579999999988888542          2344333222234556678899987

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=98.09  E-value=4.3e-06  Score=87.70  Aligned_cols=43  Identities=42%  Similarity=0.614  Sum_probs=40.3

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      .+.++|+|||+|.+||+||-.|.+.|+.|+|+|+++|+||.+.
T Consensus      1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ 1825 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLM 1825 (2142)
T ss_pred             ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceee
Confidence            4578999999999999999999999999999999999999874

>PLN02507 glutathione reductase

Probab=98.07  E-value=4.4e-06  Score=85.63  Aligned_cols=43  Identities=37%  Similarity=0.376  Sum_probs=38.2

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEec---------CCCCCceeE
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLES---------RDRVGGRVH   68 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~---------~~~~GG~~~   68 (507)
                      ..+|||+|||||.+|++||.++++.|++|+|+|+         .+.+||-|.
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~   74 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCV   74 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceee
Confidence            3468999999999999999999999999999996         367899773

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.05  E-value=1e-05  Score=81.67  Aligned_cols=43  Identities=23%  Similarity=0.353  Sum_probs=31.1

Q ss_pred             ccCCcccCceeEEEEeeCCc-E-EEEEcCCcEEEcCEEEEecCchh
Q 010542          253 KGLDIRLGHRVTKITRHYIG-V-KVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~-v-~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      .|++++.++ |.++..+.++ + .|++.+|++++||.||=|++...
T Consensus       167 ~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s  211 (454)
T PF04820_consen  167 RGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS  211 (454)
T ss_dssp             TT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred             CCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence            499988875 7777776554 3 48888999999999999999754

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.03  E-value=5.7e-06  Score=84.30  Aligned_cols=41  Identities=24%  Similarity=0.476  Sum_probs=37.4

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhC-CCeEEEEecC--------CCCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESR--------DRVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~-G~~V~vlE~~--------~~~GG~~   67 (507)
                      +.|||+|||||.+|..||..+++. |.+|+|+|+.        +.+||-|
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtC   51 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTC   51 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCee
Confidence            579999999999999999999997 8999999984        5799976

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.03  E-value=3.7e-05  Score=74.12  Aligned_cols=51  Identities=27%  Similarity=0.264  Sum_probs=41.4

Q ss_pred             HHHHHHHhc-cCCcccCceeEEEEeeCCcE-EEEEcCCcEEEcCEEEEecCch
Q 010542          245 LPVINTLAK-GLDIRLGHRVTKITRHYIGV-KVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       245 ~~l~~~l~~-g~~i~~~~~V~~I~~~~~~v-~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      ..+.+.|.+ |++|+++++|+.|..+++.+ .|.+++|+++.+|+||+|.+-.
T Consensus       177 kni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grs  229 (486)
T COG2509         177 KNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRS  229 (486)
T ss_pred             HHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcc
Confidence            344444443 89999999999999998864 4888899999999999999743

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=98.02  E-value=8.7e-06  Score=83.14  Aligned_cols=42  Identities=40%  Similarity=0.618  Sum_probs=39.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      ..++|+|||||++||+||..|++.|++|+|+|+.+++||.+.
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~  183 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM  183 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence            457999999999999999999999999999999999999774

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.99  E-value=6.7e-06  Score=91.09  Aligned_cols=43  Identities=37%  Similarity=0.563  Sum_probs=40.1

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEe
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT   69 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s   69 (507)
                      ..+||+|||||++||+||..|++.|++|+|+|+.+.+||.+..
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~  204 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS  204 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence            3689999999999999999999999999999999999998854

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.99  E-value=2.3e-05  Score=76.69  Aligned_cols=41  Identities=27%  Similarity=0.437  Sum_probs=37.1

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR   66 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~   66 (507)
                      ...+||+|||||.+|.-||.-.+-+|.+|.++|+.|..-|-
T Consensus        65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGT  105 (680)
T KOG0042|consen   65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGT  105 (680)
T ss_pred             CCcccEEEECCCccCcceeehhhcccceeEEEecccccCCc
Confidence            35699999999999999999999999999999998876663

>PLN02546 glutathione reductase

Probab=97.99  E-value=9.5e-06  Score=83.77  Aligned_cols=41  Identities=29%  Similarity=0.361  Sum_probs=36.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEec---------CCCCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLES---------RDRVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~---------~~~~GG~~   67 (507)
                      ..|||+|||||.+|+.||..+++.|++|+|+|+         ...+||-|
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC  127 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTC  127 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcc
Confidence            358999999999999999999999999999996         25677755

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.98  E-value=1e-05  Score=84.79  Aligned_cols=40  Identities=33%  Similarity=0.547  Sum_probs=36.8

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecC-CCCCcee
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR-DRVGGRV   67 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~-~~~GG~~   67 (507)
                      +|||+|||||.+|.+||..+++.|.+|+|+|+. +.+||-|
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtC  156 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTC  156 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccce
Confidence            689999999999999999999999999999974 4789966

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.97  E-value=3.7e-05  Score=75.10  Aligned_cols=40  Identities=25%  Similarity=0.406  Sum_probs=34.2

Q ss_pred             CCeEEEECccHHHHHHHHHHHhC--C-CeEEEEecCCCCCcee
Q 010542           28 SPSVIVIGAGMAGVAAARALHDA--S-FKVVLLESRDRVGGRV   67 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~--G-~~V~vlE~~~~~GG~~   67 (507)
                      +++|+|||+|.+|+++|.+|.+.  . ..|.|+|+....|+-+
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gi   43 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGI   43 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCc
Confidence            57999999999999999999986  1 2399999999988743

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.97  E-value=7.9e-06  Score=80.41  Aligned_cols=37  Identities=41%  Similarity=0.478  Sum_probs=33.7

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG   65 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG   65 (507)
                      .||+|||||++|+.||+.|++.|++|+|+|+.+..|-
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~   37 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT   37 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence            3799999999999999999999999999999876644

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=97.95  E-value=9.5e-06  Score=76.00  Aligned_cols=36  Identities=36%  Similarity=0.526  Sum_probs=33.9

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      .....||+|||||++|.+-|+.|+|+|.+|+|+|+.
T Consensus        42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD   77 (509)
T KOG1298|consen   42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD   77 (509)
T ss_pred             cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence            467899999999999999999999999999999994

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=97.95  E-value=8.2e-05  Score=72.68  Aligned_cols=33  Identities=36%  Similarity=0.620  Sum_probs=30.6

Q ss_pred             eEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ||+|||+|++||++|..|.+. ++|+|+=|...-
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~   41 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG   41 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence            899999999999999999998 999999996653

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.95  E-value=8.5e-05  Score=74.20  Aligned_cols=42  Identities=24%  Similarity=0.434  Sum_probs=36.0

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      +|++++++++|++|.. ++.+.+++.+|+++.+|.||++++..
T Consensus       199 ~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~  240 (396)
T PRK09754        199 AGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGIS  240 (396)
T ss_pred             CCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCC
Confidence            4899999999999976 55667888889899999999999764

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.95  E-value=1.3e-05  Score=83.70  Aligned_cols=44  Identities=32%  Similarity=0.510  Sum_probs=40.5

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      .....+|+|||||++||++|+.|++.|++|+|+|+.+.+||.++
T Consensus       134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~  177 (564)
T PRK12771        134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR  177 (564)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            34678999999999999999999999999999999999999764

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=0.00016  Score=68.39  Aligned_cols=44  Identities=27%  Similarity=0.376  Sum_probs=41.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEec
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTD   70 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~   70 (507)
                      +.+||+|+|-|+.=..-+..|+.+|.+|+.+|+++..||-.+|.
T Consensus         3 eeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasl   46 (440)
T KOG1439|consen    3 EEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASL   46 (440)
T ss_pred             CceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccce
Confidence            45999999999999999999999999999999999999988774

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.94  E-value=1.5e-05  Score=81.23  Aligned_cols=37  Identities=30%  Similarity=0.322  Sum_probs=35.4

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG   65 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG   65 (507)
                      +||+|||+|++|+++|+.|+++|++|+|+|+....||
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~   37 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF   37 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence            6999999999999999999999999999999988876

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.93  E-value=1.9e-05  Score=77.57  Aligned_cols=45  Identities=31%  Similarity=0.395  Sum_probs=40.5

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEe
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT   69 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s   69 (507)
                      .....+|+|||||++||++|..|++.|++|+|+|+.+.+||.+..
T Consensus        15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~   59 (352)
T PRK12770         15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLF   59 (352)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeee
Confidence            345679999999999999999999999999999999999997643

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.93  E-value=9.8e-06  Score=74.38  Aligned_cols=33  Identities=27%  Similarity=0.490  Sum_probs=31.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEec
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLES   59 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~   59 (507)
                      +++||+|||||++||+||..|+++|+++.|+-.
T Consensus         1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~   33 (421)
T COG3075           1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNR   33 (421)
T ss_pred             CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeC
Confidence            479999999999999999999999999999987

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.93  E-value=2.3e-05  Score=58.52  Aligned_cols=34  Identities=41%  Similarity=0.682  Sum_probs=32.1

Q ss_pred             eEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      +|+|||||..|+-+|..|++.|.+|+|+|+++++
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~   34 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL   34 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence            5899999999999999999999999999998865

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.93  E-value=8.4e-06  Score=78.05  Aligned_cols=35  Identities=34%  Similarity=0.523  Sum_probs=29.9

Q ss_pred             CeEEEECccHHHHHHHHHHHhCC-CeEEEEecCCCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDAS-FKVVLLESRDRV   63 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~~~~   63 (507)
                      ||+||||||.+|+.+|.+|+++| .+|+|+|+....
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~   36 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRY   36 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSC
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccC
Confidence            69999999999999999999997 699999996543

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=97.91  E-value=4.1e-05  Score=71.53  Aligned_cols=45  Identities=27%  Similarity=0.399  Sum_probs=39.4

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhC----CCeEEEEecCCCCCceeEe
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDA----SFKVVLLESRDRVGGRVHT   69 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~----G~~V~vlE~~~~~GG~~~s   69 (507)
                      ...++.+-|||+|++||++|.+|-+.    |.++.|+|.-+..||..-.
T Consensus        19 ~VdqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG   67 (587)
T COG4716          19 NVDQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDG   67 (587)
T ss_pred             ccccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCC
Confidence            35678899999999999999999886    6799999999999997643

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.90  E-value=1.4e-05  Score=71.58  Aligned_cols=32  Identities=38%  Similarity=0.605  Sum_probs=30.3

Q ss_pred             eEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ||+|||||++||+||..|++.|.+|+|+|+.+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~   32 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP   32 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence            79999999999999999999999999998865

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.89  E-value=1.8e-05  Score=72.69  Aligned_cols=42  Identities=40%  Similarity=0.724  Sum_probs=37.0

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC--CCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR--DRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~--~~~GG~~   67 (507)
                      ....||+|||||++||.||..|+.+|++|+|+|+.  ..+||.+
T Consensus         3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA   46 (552)
T COG3573           3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA   46 (552)
T ss_pred             cccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence            35789999999999999999999999999999996  4567755

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.85  E-value=0.00018  Score=71.41  Aligned_cols=43  Identities=23%  Similarity=0.473  Sum_probs=37.8

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      .|++++++++|++|..+++.+.+++.+|+++.+|.||+|++..
T Consensus       196 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~  238 (377)
T PRK04965        196 MGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLR  238 (377)
T ss_pred             CCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCC
Confidence            3889999999999998777777888899899999999999764

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.84  E-value=0.00087  Score=62.36  Aligned_cols=43  Identities=35%  Similarity=0.448  Sum_probs=39.9

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ..+.+|..|||||-.|+++|.+.++.|.+|.|+|..-++||-|
T Consensus        17 ~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTC   59 (478)
T KOG0405|consen   17 DVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTC   59 (478)
T ss_pred             cccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceE
Confidence            3468999999999999999999999999999999988999966

>PRK13984 putative oxidoreductase; Provisional

Probab=97.83  E-value=2.9e-05  Score=81.95  Aligned_cols=44  Identities=30%  Similarity=0.535  Sum_probs=40.5

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      ..+..+|+|||||.+||+||..|++.|++|+|||+.+.+||.+.
T Consensus       280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~  323 (604)
T PRK13984        280 EKKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR  323 (604)
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence            35678999999999999999999999999999999999999764

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.80  E-value=2.2e-05  Score=77.97  Aligned_cols=35  Identities=37%  Similarity=0.513  Sum_probs=32.6

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +++||+|||||++|++||+.|+++|++|+|+|+..
T Consensus         1 ~~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~   35 (422)
T PRK05329          1 MKFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ   35 (422)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence            36899999999999999999999999999999863

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.80  E-value=2.4e-05  Score=79.96  Aligned_cols=40  Identities=40%  Similarity=0.585  Sum_probs=35.6

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecC-----C---CCCcee
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR-----D---RVGGRV   67 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~-----~---~~GG~~   67 (507)
                      .+||+|||||.+|+.||..+++.|++|+|+|+.     .   .+||-|
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc   49 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTC   49 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccc
Confidence            489999999999999999999999999999973     1   578865

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.78  E-value=2.6e-05  Score=79.39  Aligned_cols=38  Identities=32%  Similarity=0.515  Sum_probs=34.5

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ++|+|||||.+|++||..|++.|++|+|+|++ .+||-|
T Consensus         1 ~~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c   38 (458)
T PRK06912          1 SKLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTC   38 (458)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccC
Confidence            38999999999999999999999999999995 577765

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.76  E-value=2.8e-05  Score=83.93  Aligned_cols=34  Identities=24%  Similarity=0.336  Sum_probs=31.9

Q ss_pred             CeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDR   62 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~   62 (507)
                      ++|+|||||++||+||..|++.  |++|+|+|++..
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            5899999999999999999998  899999999875

>PRK07846 mycothione reductase; Reviewed

Probab=97.76  E-value=0.00027  Score=71.73  Aligned_cols=45  Identities=31%  Similarity=0.453  Sum_probs=37.9

Q ss_pred             hccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          252 AKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       252 ~~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      .+|++++++++|++|+.+++++.+++.+|+++.+|.||+|++...
T Consensus       218 ~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~p  262 (451)
T PRK07846        218 SKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVP  262 (451)
T ss_pred             hcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCcc
Confidence            347889999999999877777778888888999999999997543

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.73  E-value=0.00029  Score=71.97  Aligned_cols=43  Identities=30%  Similarity=0.396  Sum_probs=36.7

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCC--cEEEcCEEEEecCch
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGG--KTFVADAVVVAVPLG  295 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g--~~~~ad~VI~a~p~~  295 (507)
                      .|++++++++|++|+.+++++.+++.+|  +++.+|.||+|++..
T Consensus       224 ~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~  268 (461)
T TIGR01350       224 KGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRK  268 (461)
T ss_pred             cCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCc
Confidence            4889999999999998888888777777  479999999999754

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.73  E-value=0.00035  Score=71.38  Aligned_cols=43  Identities=30%  Similarity=0.358  Sum_probs=37.5

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      .|++++++++|++|..+++++.+++.+|+++.+|.||+|++..
T Consensus       229 ~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  271 (461)
T PRK05249        229 SGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRT  271 (461)
T ss_pred             cCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCC
Confidence            3889999999999998777787877788889999999999754

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=0.00098  Score=62.58  Aligned_cols=44  Identities=20%  Similarity=0.253  Sum_probs=41.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEec
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTD   70 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~   70 (507)
                      ..+||+|+|-|+.=..-+..|+-+|++|+.+|+++..|+-.+|.
T Consensus         5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asl   48 (434)
T COG5044           5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASL   48 (434)
T ss_pred             ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccce
Confidence            47999999999999999999999999999999999999988774

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=97.69  E-value=6.4e-05  Score=70.54  Aligned_cols=44  Identities=27%  Similarity=0.347  Sum_probs=39.0

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCceeEe
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRVHT   69 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~~~s   69 (507)
                      +..+.|.|||+|+||+++|++|.++  +..|+|+|+.+.++|..+.
T Consensus        18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy   63 (468)
T KOG1800|consen   18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY   63 (468)
T ss_pred             cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeee
Confidence            3456999999999999999999985  6899999999999998755

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.69  E-value=0.00037  Score=71.22  Aligned_cols=44  Identities=39%  Similarity=0.547  Sum_probs=36.9

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCC---cEEEcCEEEEecCchh
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAVPLGV  296 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g---~~~~ad~VI~a~p~~~  296 (507)
                      .|++++++++|++|+.+++++.+++.+|   +++.+|.||+|++...
T Consensus       226 ~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p  272 (462)
T PRK06416        226 RGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRP  272 (462)
T ss_pred             cCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCcc
Confidence            4899999999999998877777777666   6799999999997543

>PRK02106 choline dehydrogenase; Validated

Probab=97.68  E-value=4.7e-05  Score=79.59  Aligned_cols=36  Identities=36%  Similarity=0.512  Sum_probs=33.3

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHh-CCCeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHD-ASFKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~-~G~~V~vlE~~~   61 (507)
                      ...+|+||||||.+|+.+|.+|++ .|++|+|||+..
T Consensus         3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~   39 (560)
T PRK02106          3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG   39 (560)
T ss_pred             CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence            456999999999999999999999 799999999974

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=97.66  E-value=2.2e-05  Score=70.75  Aligned_cols=42  Identities=26%  Similarity=0.609  Sum_probs=37.2

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCC------CeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDAS------FKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G------~~V~vlE~~~~~GG~~   67 (507)
                      ....+|+||||||.|.++||+|++.+      ..|+|||+....||..
T Consensus         8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaS   55 (380)
T KOG2852|consen    8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGAS   55 (380)
T ss_pred             CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccc
Confidence            44588999999999999999999986      7899999988888854

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.64  E-value=5.3e-05  Score=78.99  Aligned_cols=33  Identities=30%  Similarity=0.570  Sum_probs=30.7

Q ss_pred             eEEEECccHHHHHHHHHHH----hCCCeEEEEecCCC
Q 010542           30 SVIVIGAGMAGVAAARALH----DASFKVVLLESRDR   62 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~----~~G~~V~vlE~~~~   62 (507)
                      ||+|||||+|||+||..++    ++|.+|+|+||...
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~   37 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL   37 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence            7999999999999999998    67999999999765

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>TIGR03452 mycothione_red mycothione reductase

Probab=97.63  E-value=0.00044  Score=70.27  Aligned_cols=44  Identities=39%  Similarity=0.503  Sum_probs=37.5

Q ss_pred             hccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542          252 AKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       252 ~~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      ..|+++++++.|++|+.+++++.+++.+|+++.+|.||+|++..
T Consensus       221 ~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~  264 (452)
T TIGR03452       221 KKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRV  264 (452)
T ss_pred             hcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccC
Confidence            34789999999999998777777887788889999999999754

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=97.61  E-value=0.011  Score=61.42  Aligned_cols=45  Identities=29%  Similarity=0.248  Sum_probs=35.6

Q ss_pred             hccCCcccCceeEEEEeeCCcEE-EEEc---CCc--EEEcCEEEEecCchh
Q 010542          252 AKGLDIRLGHRVTKITRHYIGVK-VTVE---GGK--TFVADAVVVAVPLGV  296 (507)
Q Consensus       252 ~~g~~i~~~~~V~~I~~~~~~v~-v~~~---~g~--~~~ad~VI~a~p~~~  296 (507)
                      ..|++|+++++|++|..+++++. |++.   +|+  ++.|+.||+|+++..
T Consensus       140 ~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa  190 (516)
T TIGR03377       140 EHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA  190 (516)
T ss_pred             HcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch
Confidence            34999999999999999888653 4432   343  689999999999865

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.60  E-value=0.00049  Score=68.11  Aligned_cols=41  Identities=39%  Similarity=0.415  Sum_probs=34.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      +.+||+|||||.||+-||+..++.|.+++++=-+-..=|.+
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~m   43 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEM   43 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeec
Confidence            45999999999999999999999999999887763333344

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.59  E-value=0.00055  Score=69.88  Aligned_cols=43  Identities=26%  Similarity=0.332  Sum_probs=37.2

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      .|++++++++|++|+.+++++.+++.+|+++.+|.||++++..
T Consensus       231 ~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~  273 (466)
T PRK07845        231 RGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSV  273 (466)
T ss_pred             CCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCC
Confidence            3899999999999987777787887888899999999998754

>PRK06116 glutathione reductase; Validated

Probab=97.56  E-value=0.00093  Score=68.02  Aligned_cols=43  Identities=21%  Similarity=0.388  Sum_probs=36.7

Q ss_pred             ccCCcccCceeEEEEeeCCc-EEEEEcCCcEEEcCEEEEecCch
Q 010542          253 KGLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      .|++++++++|++|+.++++ +.+++.+|+++.+|.||+|++..
T Consensus       221 ~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~  264 (450)
T PRK06116        221 KGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGRE  264 (450)
T ss_pred             CCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCC
Confidence            48999999999999876555 77888888899999999999753

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.56  E-value=0.00078  Score=68.29  Aligned_cols=36  Identities=22%  Similarity=0.355  Sum_probs=32.7

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ..+|+|||||.+|+.+|..|++.|.+|+|+|+.+++
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  192 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI  192 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            458999999999999999999999999999997653

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.55  E-value=0.00095  Score=67.79  Aligned_cols=35  Identities=29%  Similarity=0.455  Sum_probs=32.2

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ..+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~  200 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHER  200 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence            36899999999999999999999999999998654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PLN02507 glutathione reductase

Probab=97.51  E-value=0.0012  Score=67.87  Aligned_cols=43  Identities=30%  Similarity=0.523  Sum_probs=37.4

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      .|+++++++.|++|+.+++++.+.+.+|+++.+|.||++++..
T Consensus       257 ~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~  299 (499)
T PLN02507        257 RGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRA  299 (499)
T ss_pred             CCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCC
Confidence            3899999999999998777777888888889999999999754

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.50  E-value=0.0011  Score=67.26  Aligned_cols=43  Identities=35%  Similarity=0.474  Sum_probs=37.0

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      .|+++++++.|++|...++++.+++.+|+++.+|.||+|++..
T Consensus       220 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~  262 (446)
T TIGR01424       220 RGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRS  262 (446)
T ss_pred             CCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCC
Confidence            4899999999999987767777777788889999999999753

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.44  E-value=0.00037  Score=75.59  Aligned_cols=42  Identities=21%  Similarity=0.344  Sum_probs=35.2

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      .|++++++++|++|+.++.  .|++.+|+++.||++|+||+...
T Consensus        67 ~gv~~~~g~~V~~Id~~~k--~V~~~~g~~~~yD~LVlATGs~p  108 (785)
T TIGR02374        67 HGITLYTGETVIQIDTDQK--QVITDAGRTLSYDKLILATGSYP  108 (785)
T ss_pred             CCCEEEcCCeEEEEECCCC--EEEECCCcEeeCCEEEECCCCCc
Confidence            4889999999999988654  46667888899999999998653

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.43  E-value=0.00015  Score=71.26  Aligned_cols=52  Identities=17%  Similarity=0.078  Sum_probs=41.3

Q ss_pred             HHHHHHHhc-cCCcccCceeEEEEeeCCcEE-EEEcCC--cEEEcCEEEEecCchh
Q 010542          245 LPVINTLAK-GLDIRLGHRVTKITRHYIGVK-VTVEGG--KTFVADAVVVAVPLGV  296 (507)
Q Consensus       245 ~~l~~~l~~-g~~i~~~~~V~~I~~~~~~v~-v~~~~g--~~~~ad~VI~a~p~~~  296 (507)
                      +.|.+++.+ |+++..+++|.++..++++++ |.+.++  .++.||+||+|++...
T Consensus       267 ~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~  322 (419)
T TIGR03378       267 EALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFF  322 (419)
T ss_pred             HHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCc
Confidence            455555554 889999999999999988876 555665  3899999999998873

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR02053 MerA mercuric reductase

Probab=97.42  E-value=0.0013  Score=67.30  Aligned_cols=36  Identities=36%  Similarity=0.547  Sum_probs=32.6

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ..+|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  201 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL  201 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC
Confidence            368999999999999999999999999999986543

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.41  E-value=0.00017  Score=67.88  Aligned_cols=42  Identities=31%  Similarity=0.449  Sum_probs=39.7

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      ..+|++|||+|++|-.||...++.|++...+|++..+||-|-
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcL   79 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCL   79 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceee
Confidence            579999999999999999999999999999999999999763

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.40  E-value=0.0017  Score=66.55  Aligned_cols=35  Identities=26%  Similarity=0.396  Sum_probs=32.1

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.++
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~  217 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPA  217 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence            36899999999999999999999999999998654

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.39  E-value=0.0017  Score=66.47  Aligned_cols=35  Identities=31%  Similarity=0.504  Sum_probs=31.7

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.++
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~  206 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR  206 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            36899999999999999999999999999997553

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.39  E-value=0.00016  Score=74.77  Aligned_cols=36  Identities=31%  Similarity=0.481  Sum_probs=33.6

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ...++|++|||+|.+|.+.|.+|++.|++|+|||+.
T Consensus         4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG   39 (542)
T COG2303           4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG   39 (542)
T ss_pred             ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence            457899999999999999999999889999999995

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.38  E-value=0.0013  Score=71.33  Aligned_cols=42  Identities=24%  Similarity=0.367  Sum_probs=35.4

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCc
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL  294 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~  294 (507)
                      .|+++++++.|++|..++....|++.+|+++.+|.||++++.
T Consensus       195 ~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~  236 (785)
T TIGR02374       195 KGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGI  236 (785)
T ss_pred             cCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCC
Confidence            389999999999998655445678889999999999999974

>PRK06370 mercuric reductase; Validated

Probab=97.37  E-value=0.0021  Score=65.67  Aligned_cols=36  Identities=22%  Similarity=0.452  Sum_probs=32.8

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~  206 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRL  206 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence            468999999999999999999999999999997653

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.34  E-value=0.0023  Score=65.53  Aligned_cols=35  Identities=31%  Similarity=0.588  Sum_probs=32.4

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ..+|+|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~  214 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR  214 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence            46899999999999999999999999999999764

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.30  E-value=0.00028  Score=71.47  Aligned_cols=37  Identities=22%  Similarity=0.459  Sum_probs=32.5

Q ss_pred             CCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVG   64 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~G   64 (507)
                      +++|+|||||++|++||..|++.  +.+|+|+|+++..+
T Consensus         1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~   39 (438)
T PRK13512          1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS   39 (438)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence            35899999999999999999886  57999999987654

>TIGR01810 betA choline dehydrogenase

Probab=97.30  E-value=0.0002  Score=74.44  Aligned_cols=32  Identities=34%  Similarity=0.496  Sum_probs=30.3

Q ss_pred             eEEEECccHHHHHHHHHHHhCC-CeEEEEecCC
Q 010542           30 SVIVIGAGMAGVAAARALHDAS-FKVVLLESRD   61 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~~   61 (507)
                      |+||||||.+|+..|.+|+++| ++|+|||+..
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~   33 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG   33 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence            7999999999999999999998 6999999964

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PLN02785 Protein HOTHEAD

Probab=97.30  E-value=0.00029  Score=73.44  Aligned_cols=41  Identities=34%  Similarity=0.549  Sum_probs=34.9

Q ss_pred             cCCCCCCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           20 NAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        20 ~~~~~~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ++..+....+|+||||||.+|+..|.+|++ +.+|+|||+..
T Consensus        47 ~~~~~~~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~   87 (587)
T PLN02785         47 SSSSGGDSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG   87 (587)
T ss_pred             cccccccccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence            334444567999999999999999999999 59999999964

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.29  E-value=0.0024  Score=65.14  Aligned_cols=35  Identities=23%  Similarity=0.421  Sum_probs=32.0

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ..+++|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~  204 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ  204 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            35899999999999999999999999999998654

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.29  E-value=0.0026  Score=64.75  Aligned_cols=35  Identities=29%  Similarity=0.523  Sum_probs=31.7

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ..+|+|||||.+|+-+|..|++.|.+|+++|+.++
T Consensus       149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~  183 (444)
T PRK09564        149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR  183 (444)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence            46899999999999999999999999999997553

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.28  E-value=0.00016  Score=70.12  Aligned_cols=35  Identities=29%  Similarity=0.363  Sum_probs=27.3

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCC-CeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~~~   62 (507)
                      .+|+++||.|+++|+-|..|.+.+ .+++.||+.+.
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~   37 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS   37 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence            479999999999999999999886 89999998764

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.28  E-value=0.0031  Score=64.40  Aligned_cols=36  Identities=28%  Similarity=0.491  Sum_probs=32.6

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ..+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~i  209 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRI  209 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence            468999999999999999999999999999986543

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=97.25  E-value=0.0034  Score=59.98  Aligned_cols=36  Identities=36%  Similarity=0.550  Sum_probs=31.6

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhC----CCeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDA----SFKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~----G~~V~vlE~~~   61 (507)
                      .+.+||+|||||+.|++.|..|...    -++|.|+|..+
T Consensus        34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~   73 (481)
T KOG3855|consen   34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD   73 (481)
T ss_pred             cccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence            4589999999999999999999865    37999999973

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.25  E-value=0.0034  Score=63.69  Aligned_cols=42  Identities=31%  Similarity=0.432  Sum_probs=35.2

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      .|++++++++|++|+.+++.+.+++.++ ++.+|.||+|++..
T Consensus       212 ~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~  253 (441)
T PRK08010        212 QGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQ  253 (441)
T ss_pred             CCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCC
Confidence            4899999999999998777777776666 68999999998754

>PRK14727 putative mercuric reductase; Provisional

Probab=97.24  E-value=0.0042  Score=63.73  Aligned_cols=43  Identities=12%  Similarity=0.247  Sum_probs=36.1

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      .|++++++++|++|+.+++.+.+++.++ ++.+|.||+|++...
T Consensus       241 ~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~p  283 (479)
T PRK14727        241 EGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHA  283 (479)
T ss_pred             CCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCC
Confidence            4899999999999988777777777666 789999999998643

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=97.22  E-value=0.0033  Score=63.53  Aligned_cols=35  Identities=31%  Similarity=0.592  Sum_probs=31.9

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ..+|+|||||.+|+.+|..|++.|.+|+++++.+.
T Consensus       137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~  171 (427)
T TIGR03385       137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER  171 (427)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence            46899999999999999999999999999998654

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.19  E-value=0.0039  Score=64.13  Aligned_cols=31  Identities=23%  Similarity=0.437  Sum_probs=29.6

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEec
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLES   59 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~   59 (507)
                      .+++|||||..|+-.|..|++.|.+|+|+++
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~  213 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNELGFDVTVAVR  213 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEc
Confidence            4899999999999999999999999999986

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.19  E-value=0.00044  Score=69.09  Aligned_cols=42  Identities=12%  Similarity=0.295  Sum_probs=34.3

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      .++++++++.|.+|..++.  .|.+.+|+++.||++|+||+...
T Consensus        71 ~~i~~~~g~~V~~id~~~~--~v~~~~g~~~~yd~LViATGs~~  112 (396)
T PRK09754         71 NNVHLHSGVTIKTLGRDTR--ELVLTNGESWHWDQLFIATGAAA  112 (396)
T ss_pred             CCCEEEcCCEEEEEECCCC--EEEECCCCEEEcCEEEEccCCCC
Confidence            4889999999999988764  34556788999999999998653

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.18  E-value=0.0033  Score=68.41  Aligned_cols=42  Identities=12%  Similarity=0.259  Sum_probs=34.8

Q ss_pred             ccCCcccCceeEEEEeeCC--cEEEEEcCCcEEEcCEEEEecCc
Q 010542          253 KGLDIRLGHRVTKITRHYI--GVKVTVEGGKTFVADAVVVAVPL  294 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~--~v~v~~~~g~~~~ad~VI~a~p~  294 (507)
                      .|+++++++.|++|..+++  ...+.+.+|+++.+|.||+|++.
T Consensus       200 ~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~  243 (847)
T PRK14989        200 MGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGI  243 (847)
T ss_pred             CCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCc
Confidence            3899999999999986532  34577889999999999999974

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.18  E-value=0.00053  Score=69.11  Aligned_cols=38  Identities=26%  Similarity=0.626  Sum_probs=33.6

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ..++++|+|||||.+|+++|..|.+.+.+|+|+|+++.
T Consensus         7 ~~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~   44 (424)
T PTZ00318          7 RLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH   44 (424)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence            34678999999999999999999877889999999764

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.17  E-value=0.003  Score=64.56  Aligned_cols=35  Identities=23%  Similarity=0.441  Sum_probs=32.3

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ..+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus       174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~  208 (471)
T PRK06467        174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ  208 (471)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence            36899999999999999999999999999999764

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.15  E-value=0.005  Score=63.00  Aligned_cols=43  Identities=33%  Similarity=0.404  Sum_probs=35.3

Q ss_pred             ccCCcccCceeEEEEeeCCc-EEEEEcCCcEEEcCEEEEecCch
Q 010542          253 KGLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      +|+++++++.|++|..++++ ..+++.+|+++.+|.||+|++..
T Consensus       244 ~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~  287 (486)
T TIGR01423       244 NGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRV  287 (486)
T ss_pred             cCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCC
Confidence            48999999999999876544 56777778889999999999743

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK14694 putative mercuric reductase; Provisional

Probab=97.14  E-value=0.0052  Score=62.83  Aligned_cols=43  Identities=14%  Similarity=0.220  Sum_probs=35.0

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      .|+++++++.|++|+.+++.+.+++.++ ++.+|.||+|++...
T Consensus       231 ~GI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~p  273 (468)
T PRK14694        231 EGIEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGRTP  273 (468)
T ss_pred             CCCEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCCC
Confidence            4899999999999988776666766555 799999999997543

>PRK13748 putative mercuric reductase; Provisional

Probab=97.12  E-value=0.0051  Score=64.57  Aligned_cols=42  Identities=17%  Similarity=0.226  Sum_probs=35.3

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      .|+++++++.|++|+.+++.+.+.+.++ ++.+|.||+|++..
T Consensus       323 ~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~  364 (561)
T PRK13748        323 EGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRA  364 (561)
T ss_pred             CCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCC
Confidence            4899999999999988777777776666 79999999999754

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.08  E-value=0.0005  Score=63.43  Aligned_cols=36  Identities=36%  Similarity=0.485  Sum_probs=32.6

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      +...|.|||||++|.-|||.|+++|..|.++|-.+.
T Consensus         2 ~~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~   37 (439)
T COG1206           2 MQQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV   37 (439)
T ss_pred             CCCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence            356799999999999999999999999999998654

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.07  E-value=0.0046  Score=60.10  Aligned_cols=35  Identities=34%  Similarity=0.461  Sum_probs=31.7

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ...+||+|||||.||.-||...++.|.+.+++-.+
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            56899999999999999999999999988877765

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.06  E-value=0.0058  Score=62.59  Aligned_cols=43  Identities=21%  Similarity=0.183  Sum_probs=34.7

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCC---cEEEcCEEEEecCch
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAVPLG  295 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g---~~~~ad~VI~a~p~~  295 (507)
                      +|+++++++.+++|...++.+.++..++   +++.+|.||+|++..
T Consensus       233 ~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~  278 (484)
T TIGR01438       233 HGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRD  278 (484)
T ss_pred             cCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCC
Confidence            4899999999999987766666666555   379999999999753

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PTZ00058 glutathione reductase; Provisional

Probab=96.90  E-value=0.011  Score=61.37  Aligned_cols=35  Identities=11%  Similarity=0.249  Sum_probs=32.2

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ..+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~  271 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNR  271 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence            56899999999999999999999999999998654

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=96.87  E-value=0.0012  Score=66.41  Aligned_cols=40  Identities=43%  Similarity=0.683  Sum_probs=37.6

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ..+++|||+|..||.+|..|+++|++|+|+|+.+++||..
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~  175 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL  175 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhh
Confidence            5899999999999999999999999999999999998854

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=96.76  E-value=0.0096  Score=60.03  Aligned_cols=38  Identities=24%  Similarity=0.354  Sum_probs=31.5

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCc
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL  294 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~  294 (507)
                      .|++++++++|++|..  +  .|.+++|+++.+|.||++++.
T Consensus       241 ~gV~v~~~~~v~~v~~--~--~v~~~~g~~i~~d~vi~~~G~  278 (424)
T PTZ00318        241 LGVDIRTKTAVKEVLD--K--EVVLKDGEVIPTGLVVWSTGV  278 (424)
T ss_pred             CCCEEEeCCeEEEEeC--C--EEEECCCCEEEccEEEEccCC
Confidence            3899999999999874  3  355678989999999999874

>PLN02546 glutathione reductase

Probab=96.72  E-value=0.017  Score=59.95  Aligned_cols=35  Identities=11%  Similarity=0.275  Sum_probs=32.0

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ..+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~  286 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKK  286 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccc
Confidence            46899999999999999999999999999998654

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.66  E-value=0.0019  Score=59.97  Aligned_cols=35  Identities=34%  Similarity=0.463  Sum_probs=32.9

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEec
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLES   59 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~   59 (507)
                      .+-.||.+|||||-+||+||.+.+..|.+|.++|.
T Consensus        16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf   50 (503)
T KOG4716|consen   16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDF   50 (503)
T ss_pred             ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence            45689999999999999999999999999999997

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=96.65  E-value=0.0023  Score=63.47  Aligned_cols=34  Identities=18%  Similarity=0.477  Sum_probs=29.9

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCC--CeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~   61 (507)
                      +++|+|||||++|+++|..|.+.+  .+|+|+++++
T Consensus         2 ~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~   37 (377)
T PRK04965          2 SNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS   37 (377)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence            468999999999999999998864  5899999865

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.51  E-value=0.0035  Score=53.55  Aligned_cols=32  Identities=38%  Similarity=0.472  Sum_probs=30.3

Q ss_pred             eEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +|+|||||-.|.+.|..|+++|++|+++.++.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            69999999999999999999999999999864

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=96.49  E-value=0.092  Score=51.42  Aligned_cols=51  Identities=24%  Similarity=0.263  Sum_probs=38.5

Q ss_pred             cchHHHHHHHh-----ccCCcccCceeEEEEeeCCcEEEEEcCC-cEEEcCEEEEecCc
Q 010542          242 RGYLPVINTLA-----KGLDIRLGHRVTKITRHYIGVKVTVEGG-KTFVADAVVVAVPL  294 (507)
Q Consensus       242 ~G~~~l~~~l~-----~g~~i~~~~~V~~I~~~~~~v~v~~~~g-~~~~ad~VI~a~p~  294 (507)
                      .-.++++++|.     .|++|+++++|++|  +++++.+.+..+ .++.||+||+|++-
T Consensus        83 ~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG  139 (376)
T TIGR03862        83 MKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGG  139 (376)
T ss_pred             CCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCC
Confidence            34556666664     39999999999999  445577776543 47999999999974

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=96.36  E-value=0.052  Score=52.73  Aligned_cols=42  Identities=26%  Similarity=0.292  Sum_probs=30.8

Q ss_pred             cCCcccCceeEEEEeeCC-cEEEEEcCC-----cEEEcCEEEEecCch
Q 010542          254 GLDIRLGHRVTKITRHYI-GVKVTVEGG-----KTFVADAVVVAVPLG  295 (507)
Q Consensus       254 g~~i~~~~~V~~I~~~~~-~v~v~~~~g-----~~~~ad~VI~a~p~~  295 (507)
                      .++++.+++|++++..++ ++.+++.+.     .++.+|.||+||+..
T Consensus       293 ~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy~  340 (341)
T PF13434_consen  293 RLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATGYR  340 (341)
T ss_dssp             -SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---EE
T ss_pred             CeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCCcc
Confidence            457899999999999884 898887652     378999999999753

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=96.32  E-value=0.004  Score=61.47  Aligned_cols=33  Identities=18%  Similarity=0.344  Sum_probs=29.0

Q ss_pred             eEEEECccHHHHHHHHHHHhC---CCeEEEEecCCC
Q 010542           30 SVIVIGAGMAGVAAARALHDA---SFKVVLLESRDR   62 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~---G~~V~vlE~~~~   62 (507)
                      +|+|||||++|+++|..|.++   +.+|+|+|+++.
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~   36 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST   36 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence            489999999999999999754   689999999765

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.30  E-value=0.0049  Score=54.03  Aligned_cols=33  Identities=27%  Similarity=0.461  Sum_probs=27.0

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ++|+|||.|..||..|..|+++|++|+.+|.+.
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~   33 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE   33 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence            579999999999999999999999999999865

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=96.29  E-value=0.0033  Score=57.47  Aligned_cols=33  Identities=30%  Similarity=0.592  Sum_probs=27.9

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCC-------CeEEEEec
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDAS-------FKVVLLES   59 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G-------~~V~vlE~   59 (507)
                      ++++|+|||+|+.||++|+.|.+.+       .+|+|++-
T Consensus         2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~D   41 (342)
T KOG3923|consen    2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISD   41 (342)
T ss_pred             CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecC
Confidence            4689999999999999999998843       57888874

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.25  E-value=0.0072  Score=62.11  Aligned_cols=35  Identities=34%  Similarity=0.548  Sum_probs=32.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +..+|+|||+|.+|+++|..|+++|++|+++|+++
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            34689999999999999999999999999999765

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.21  E-value=0.0075  Score=52.70  Aligned_cols=32  Identities=34%  Similarity=0.504  Sum_probs=28.1

Q ss_pred             eEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +|+|||||..|..-|..++..|++|+++|.+.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   32 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP   32 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            58999999999999999999999999999853

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.11  E-value=0.003  Score=58.91  Aligned_cols=40  Identities=33%  Similarity=0.496  Sum_probs=32.9

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR   66 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~   66 (507)
                      ....|||+|||||++|-+||.+-+++|.+.-|+-  +|+||.
T Consensus       208 ~k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQ  247 (520)
T COG3634         208 AKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQ  247 (520)
T ss_pred             ccCCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCe
Confidence            4568999999999999999999999998765542  466664

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.98  E-value=0.0082  Score=61.33  Aligned_cols=34  Identities=38%  Similarity=0.556  Sum_probs=31.4

Q ss_pred             eEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      +|+|||+|.+|++||..|.++|++|+++|++...
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            5899999999999999999999999999987653

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=95.93  E-value=0.0097  Score=60.63  Aligned_cols=38  Identities=34%  Similarity=0.497  Sum_probs=33.9

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhC-CCeEEEEecCCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRDR   62 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~-G~~V~vlE~~~~   62 (507)
                      ....||.||||||-||..-|.+|++. ..+|+|+|+...
T Consensus        54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~   92 (623)
T KOG1238|consen   54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGD   92 (623)
T ss_pred             cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCC
Confidence            46789999999999999999999997 579999999543

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=95.84  E-value=0.012  Score=64.16  Aligned_cols=37  Identities=24%  Similarity=0.464  Sum_probs=32.3

Q ss_pred             CCeEEEECccHHHHHHHHHHHhC----CCeEEEEecCCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDA----SFKVVLLESRDRVG   64 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~----G~~V~vlE~~~~~G   64 (507)
                      +.+|+|||+|++|+.+|..|.+.    +++|+|++++++++
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~   43 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA   43 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence            35899999999999999999764    47999999998864

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=95.81  E-value=0.042  Score=52.26  Aligned_cols=38  Identities=29%  Similarity=0.490  Sum_probs=34.8

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG   65 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG   65 (507)
                      ..+.+|||||+.||-.+---.+.|-+|+++|.-+.+||
T Consensus       211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~  248 (506)
T KOG1335|consen  211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGG  248 (506)
T ss_pred             cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcc
Confidence            46799999999999999999999999999999887766

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.81  E-value=0.012  Score=56.53  Aligned_cols=33  Identities=36%  Similarity=0.442  Sum_probs=31.1

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ++|+|||+|..|.+.|..|+++|++|++++++.
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~   35 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP   35 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence            479999999999999999999999999999865

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=95.62  E-value=0.021  Score=49.97  Aligned_cols=42  Identities=33%  Similarity=0.452  Sum_probs=35.0

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEec---C-CCCCceeEe
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLES---R-DRVGGRVHT   69 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~---~-~~~GG~~~s   69 (507)
                      +-+|+|||+|+++-+||.+++++..+-+|||-   + --+||.+.|
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtT   53 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTT   53 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeee
Confidence            45899999999999999999999999999997   2 233666655

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.56  E-value=0.021  Score=48.35  Aligned_cols=31  Identities=32%  Similarity=0.497  Sum_probs=29.2

Q ss_pred             EEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           31 VIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        31 v~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      |+|||+|..|+..|++|++.|++|.++-+..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            7899999999999999999999999999854

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.39  E-value=0.024  Score=53.66  Aligned_cols=34  Identities=29%  Similarity=0.431  Sum_probs=31.4

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ..+|+|||+|..|...|..|++.|++|+++|.++
T Consensus         5 ~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   38 (286)
T PRK07819          5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE   38 (286)
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence            3489999999999999999999999999999864

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.38  E-value=0.021  Score=51.85  Aligned_cols=33  Identities=36%  Similarity=0.656  Sum_probs=31.2

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ++++|||+|-.|.+.|..|.+.|++|+++|+++
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~   33 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE   33 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence            579999999999999999999999999999965

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.26  E-value=0.026  Score=53.59  Aligned_cols=34  Identities=29%  Similarity=0.350  Sum_probs=31.1

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ..+|+|||+|..|.+.|..|+++|++|++++.+.
T Consensus         3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            3579999999999999999999999999999753

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=95.25  E-value=0.032  Score=53.68  Aligned_cols=36  Identities=31%  Similarity=0.450  Sum_probs=32.3

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ++.++|+|||+|..|.+-|+.|+++|++|+++-++.
T Consensus         3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            345789999999999999999999999999998853

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.23  E-value=0.032  Score=53.16  Aligned_cols=34  Identities=32%  Similarity=0.341  Sum_probs=31.3

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ..+|+|||+|..|...|..|+++|++|++++.+.
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4679999999999999999999999999999853

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=95.23  E-value=0.029  Score=56.36  Aligned_cols=42  Identities=43%  Similarity=0.557  Sum_probs=36.7

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCCc--EEEcCEEEEecCc
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGGK--TFVADAVVVAVPL  294 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~--~~~ad~VI~a~p~  294 (507)
                      .|++++++++|++++..++++.+++++|+  ++++|.|++|++-
T Consensus       227 ~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR  270 (454)
T COG1249         227 GGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGR  270 (454)
T ss_pred             CCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCC
Confidence            37899999999999998887888888876  6899999999974

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.21  E-value=0.033  Score=53.29  Aligned_cols=34  Identities=18%  Similarity=0.241  Sum_probs=31.4

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ..+|+|||+|..|..-|..++.+|++|+++|.++
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~   40 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP   40 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            3579999999999999999999999999999864

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=95.21  E-value=0.021  Score=52.68  Aligned_cols=46  Identities=37%  Similarity=0.589  Sum_probs=39.2

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC--------CCCCceeEecc
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR--------DRVGGRVHTDY   71 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~--------~~~GG~~~s~~   71 (507)
                      ...-+|+|||||+.|.-||.....-|.+|+|+|.+        +..|||..+..
T Consensus       166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~  219 (371)
T COG0686         166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLY  219 (371)
T ss_pred             CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEE
Confidence            35678999999999999999999999999999997        45677766643

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.19  E-value=0.024  Score=54.49  Aligned_cols=33  Identities=24%  Similarity=0.480  Sum_probs=30.8

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ++|.|||.|..||++|..|++.|++|+.+|...
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            579999999999999999999999999999853

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=95.12  E-value=0.029  Score=54.84  Aligned_cols=33  Identities=27%  Similarity=0.354  Sum_probs=30.9

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      +++|+|||+|..|.+.|+.|+++|++|++++++
T Consensus         2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~   34 (341)
T PRK08229          2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRA   34 (341)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence            468999999999999999999999999999974

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.09  E-value=0.04  Score=47.56  Aligned_cols=36  Identities=31%  Similarity=0.410  Sum_probs=30.3

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      -...+|+|+|+|.+|+.||..|...|.+|+++|...
T Consensus        18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   18 VPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             E-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             CCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            345899999999999999999999999999999853

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=95.09  E-value=0.037  Score=49.41  Aligned_cols=37  Identities=30%  Similarity=0.394  Sum_probs=30.7

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      .-+..+|+|||+|.++.-+|..|++.|.+|+++=+++
T Consensus       164 ~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~  200 (203)
T PF13738_consen  164 DFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP  200 (203)
T ss_dssp             GCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred             hcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence            3456899999999999999999999999999998754

...

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=95.07  E-value=0.028  Score=56.94  Aligned_cols=36  Identities=19%  Similarity=0.427  Sum_probs=32.8

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ..+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus       148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l  183 (438)
T PRK13512        148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKI  183 (438)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence            368999999999999999999999999999997654

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.05  E-value=0.033  Score=56.74  Aligned_cols=35  Identities=34%  Similarity=0.655  Sum_probs=32.4

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +.++|+|||+|..|+++|..|++.|++|+++|++.
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            45789999999999999999999999999999964

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=95.04  E-value=0.18  Score=49.71  Aligned_cols=39  Identities=26%  Similarity=0.387  Sum_probs=31.7

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      .|+++++++.|++|..  +  .+++.+|+++.+|.||+|++..
T Consensus       204 ~gV~v~~~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~  242 (364)
T TIGR03169       204 RGIEVHEGAPVTRGPD--G--ALILADGRTLPADAILWATGAR  242 (364)
T ss_pred             CCCEEEeCCeeEEEcC--C--eEEeCCCCEEecCEEEEccCCC
Confidence            3889999999999853  2  4566788899999999999854

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=95.02  E-value=0.033  Score=56.89  Aligned_cols=36  Identities=36%  Similarity=0.599  Sum_probs=33.1

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ..+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  204 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI  204 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence            468999999999999999999999999999997654

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.01  E-value=0.028  Score=53.38  Aligned_cols=33  Identities=24%  Similarity=0.517  Sum_probs=30.7

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      .+|+|||+|..|...|..|+++|++|++++.++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   34 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ   34 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence            469999999999999999999999999999864

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.89  E-value=0.035  Score=55.55  Aligned_cols=34  Identities=24%  Similarity=0.363  Sum_probs=31.6

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      .++|+|||.|..|++.|..|+++|++|++++.+.
T Consensus         3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~   36 (415)
T PRK11064          3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ   36 (415)
T ss_pred             ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence            4689999999999999999999999999999854

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.89  E-value=0.23  Score=52.04  Aligned_cols=50  Identities=16%  Similarity=0.100  Sum_probs=34.9

Q ss_pred             HHHHHHHh-ccCCcccCceeEEEEee-CCcEE-E---EEcCCc--EEEcCEEEEecCc
Q 010542          245 LPVINTLA-KGLDIRLGHRVTKITRH-YIGVK-V---TVEGGK--TFVADAVVVAVPL  294 (507)
Q Consensus       245 ~~l~~~l~-~g~~i~~~~~V~~I~~~-~~~v~-v---~~~~g~--~~~ad~VI~a~p~  294 (507)
                      ..|.+.+. .|++|+.++.++++..+ +++|. +   ...+|+  .+.|+.||+||+-
T Consensus       130 ~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG  187 (570)
T PRK05675        130 HTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGG  187 (570)
T ss_pred             HHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCC
Confidence            34444333 38899999999999875 55554 2   234565  5789999999974

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=94.67  E-value=0.055  Score=51.62  Aligned_cols=35  Identities=34%  Similarity=0.389  Sum_probs=31.7

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ...+|+|||+|..|...|..|++.|++|.++|.+.
T Consensus         3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~   37 (295)
T PLN02545          3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP   37 (295)
T ss_pred             CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            34679999999999999999999999999999854

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=94.63  E-value=0.056  Score=46.43  Aligned_cols=34  Identities=29%  Similarity=0.411  Sum_probs=29.1

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +++|.|||-|..|...|.+|.++|++|.+++++.
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~   34 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP   34 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred             CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence            4689999999999999999999999999999863

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.63  E-value=0.056  Score=52.46  Aligned_cols=34  Identities=32%  Similarity=0.309  Sum_probs=31.4

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +++|+|||+|..|.+.|..|+++|++|+++.++.
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4689999999999999999999999999999853

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=94.62  E-value=0.049  Score=52.15  Aligned_cols=33  Identities=30%  Similarity=0.282  Sum_probs=30.9

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      .++|+|||+|-.|...|++|++.|.+|+++.+.
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~   34 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRD   34 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence            467999999999999999999999999999985

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.60  E-value=0.067  Score=45.95  Aligned_cols=36  Identities=22%  Similarity=0.301  Sum_probs=32.0

Q ss_pred             CCCCCeEEEECccH-HHHHHHHHHHhCCCeEEEEecC
Q 010542           25 QARSPSVIVIGAGM-AGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        25 ~~~~~dv~IIGaGi-aGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      .-...+|+|||+|- +|..+|.+|.+.|.+|+|..+.
T Consensus        41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            35679999999995 6999999999999999999975

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=94.56  E-value=0.054  Score=51.88  Aligned_cols=33  Identities=30%  Similarity=0.444  Sum_probs=30.0

Q ss_pred             CeEEEECccHHHHHHHHHHHhCC--CeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDAS--FKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~   61 (507)
                      ++|+|||+|..|.++|+.|+.+|  .+|.++|.+.
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~   35 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK   35 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence            47999999999999999999999  4899999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=94.55  E-value=0.049  Score=52.20  Aligned_cols=32  Identities=31%  Similarity=0.450  Sum_probs=29.9

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ++|+|||+|-.|.+.|..|++.|++|+++.++
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~   32 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARR   32 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            36999999999999999999999999999984

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=94.51  E-value=0.054  Score=56.09  Aligned_cols=36  Identities=36%  Similarity=0.471  Sum_probs=32.1

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ...+|+|||||.+|+-+|..|++.|.+|+|+|..+.
T Consensus       351 ~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~  386 (515)
T TIGR03140       351 KGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADE  386 (515)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCc
Confidence            356999999999999999999999999999997543

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.44  E-value=0.053  Score=51.33  Aligned_cols=33  Identities=33%  Similarity=0.489  Sum_probs=30.6

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      .+|+|||+|..|.+.|..|+++|++|+++|.+.
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~   36 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD   36 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence            579999999999999999999999999999754

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.43  E-value=0.05  Score=51.76  Aligned_cols=33  Identities=18%  Similarity=0.478  Sum_probs=30.8

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      .+|+|||+|..|...|..|+++|++|+++|.++
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE   36 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            579999999999999999999999999999854

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=94.42  E-value=0.064  Score=51.21  Aligned_cols=33  Identities=33%  Similarity=0.564  Sum_probs=30.0

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASF-KVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~   61 (507)
                      ++|+|||+|..|++.|+.|+..|+ +|+++|...
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~   35 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE   35 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            589999999999999999999887 899999843

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=94.42  E-value=0.024  Score=50.98  Aligned_cols=33  Identities=33%  Similarity=0.579  Sum_probs=27.4

Q ss_pred             eEEEECccHHHHHHHHHHHhC--CCeEEEEecCCC
Q 010542           30 SVIVIGAGMAGVAAARALHDA--SFKVVLLESRDR   62 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~   62 (507)
                      +.+||||||+|.+||-.|+..  ..+|+++-+++.
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~   35 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF   35 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence            368999999999999999975  457888887553

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=94.37  E-value=0.074  Score=47.48  Aligned_cols=35  Identities=23%  Similarity=0.357  Sum_probs=31.5

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +..+|+|||||-+|+..+..|.+.|.+|+|+..+.
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            35689999999999999999999999999998743

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=94.36  E-value=0.054  Score=51.95  Aligned_cols=31  Identities=29%  Similarity=0.366  Sum_probs=29.3

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEec
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLES   59 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~   59 (507)
                      ++|+|||+|..|.+.|+.|+++|++|+++.+
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            4699999999999999999999999999987

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.31  E-value=0.067  Score=51.47  Aligned_cols=34  Identities=26%  Similarity=0.471  Sum_probs=31.1

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ..+|+|||+|..|.+.|..|++.|++|++++.+.
T Consensus         4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            4679999999999999999999999999999753

>PRK04148 hypothetical protein; Provisional

Probab=94.30  E-value=0.06  Score=43.89  Aligned_cols=35  Identities=17%  Similarity=0.523  Sum_probs=31.4

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      +..+|++||.| .|...|..|++.|++|+.+|.++.
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            34789999999 999999999999999999998764

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=94.29  E-value=0.067  Score=41.86  Aligned_cols=34  Identities=29%  Similarity=0.485  Sum_probs=31.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      +...|+|||||-.|..-+..|.+.|.+|+|+-..
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~   39 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE   39 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence            5688999999999999999999999999999886

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=94.23  E-value=0.059  Score=57.00  Aligned_cols=36  Identities=17%  Similarity=0.252  Sum_probs=32.8

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ..+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus       312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l  347 (659)
T PTZ00153        312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL  347 (659)
T ss_pred             CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence            357999999999999999999999999999997764

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=94.21  E-value=0.044  Score=50.81  Aligned_cols=37  Identities=22%  Similarity=0.380  Sum_probs=32.3

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhC-CC-eEEEEecCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDA-SF-KVVLLESRD   61 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~-G~-~V~vlE~~~   61 (507)
                      ..+.++|+|||||-+|++.|..+.++ |. +|.|+|-.+
T Consensus        36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e   74 (446)
T KOG3851|consen   36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE   74 (446)
T ss_pred             cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence            35789999999999999999999876 54 799999864

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=94.16  E-value=0.074  Score=51.54  Aligned_cols=33  Identities=30%  Similarity=0.341  Sum_probs=30.7

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ++|+|||+|..|...|..|++.|++|++++++.
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            579999999999999999999999999999853

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=94.10  E-value=0.058  Score=54.13  Aligned_cols=34  Identities=26%  Similarity=0.377  Sum_probs=31.1

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ++|.|||.|..|+..|..|+++|++|++++.+..
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            3699999999999999999999999999998653

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=94.09  E-value=1.6  Score=45.72  Aligned_cols=50  Identities=18%  Similarity=0.052  Sum_probs=35.7

Q ss_pred             HHHHHHHh-ccCCcccCceeEEEEeeCCcEE-EE---EcCCc--EEEcCEEEEecCc
Q 010542          245 LPVINTLA-KGLDIRLGHRVTKITRHYIGVK-VT---VEGGK--TFVADAVVVAVPL  294 (507)
Q Consensus       245 ~~l~~~l~-~g~~i~~~~~V~~I~~~~~~v~-v~---~~~g~--~~~ad~VI~a~p~  294 (507)
                      ..|.+.+. .|++|+.++.|+++..+++++. +.   ..+|+  .+.|+.||+|++=
T Consensus       123 ~~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG  179 (565)
T TIGR01816       123 HTLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGG  179 (565)
T ss_pred             HHHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCC
Confidence            34444443 3889999999999988776654 22   23564  5789999999964

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.08  E-value=0.091  Score=50.43  Aligned_cols=35  Identities=20%  Similarity=0.346  Sum_probs=32.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +.++|.|||+|..|.+.|..|+++|++|.++.++.
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~   37 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS   37 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            45689999999999999999999999999999864

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=94.04  E-value=0.062  Score=53.46  Aligned_cols=36  Identities=33%  Similarity=0.469  Sum_probs=33.3

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      .++|+|+|-|.+|++||..|.+.|.+|++.|.+...
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            688999999999999999999999999999976554

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=93.99  E-value=0.081  Score=54.86  Aligned_cols=35  Identities=37%  Similarity=0.425  Sum_probs=31.9

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ...+|+|||||.+|+-+|..|++.|.+|+|+++.+
T Consensus       350 ~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~  384 (517)
T PRK15317        350 KGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP  384 (517)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc
Confidence            45799999999999999999999999999998754

>PRK10262 thioredoxin reductase; Provisional

Probab=93.90  E-value=0.094  Score=50.71  Aligned_cols=35  Identities=37%  Similarity=0.496  Sum_probs=32.1

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ...+|+|||+|.+|+-.|..|++.|.+|+++++.+
T Consensus       145 ~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~  179 (321)
T PRK10262        145 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD  179 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence            35689999999999999999999999999999864

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=93.88  E-value=0.087  Score=55.11  Aligned_cols=37  Identities=27%  Similarity=0.313  Sum_probs=33.6

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ...+|+|||||.+|+-.|..|++.|.+|+++++.+++
T Consensus       142 ~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~  178 (555)
T TIGR03143       142 TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF  178 (555)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence            4578999999999999999999999999999997754

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=93.84  E-value=0.13  Score=42.52  Aligned_cols=35  Identities=34%  Similarity=0.435  Sum_probs=31.7

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCe-EEEEecC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFK-VVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~-V~vlE~~   60 (507)
                      -+..+++|||+|=+|-++++.|.+.|.+ |+|+-|+
T Consensus        10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen   10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            3578999999999999999999999985 9999875

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=93.79  E-value=0.094  Score=53.31  Aligned_cols=35  Identities=34%  Similarity=0.384  Sum_probs=32.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ...+|+|||||..|+-+|..|.+.|.+|+|+++.+
T Consensus       271 ~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~  305 (449)
T TIGR01316       271 AGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT  305 (449)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence            34689999999999999999999999999999854

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=93.78  E-value=0.09  Score=54.01  Aligned_cols=32  Identities=22%  Similarity=0.296  Sum_probs=30.4

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ++|+|||+|..|...|..|+++|++|+|++.+
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~   36 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPH   36 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            57999999999999999999999999999985

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=93.76  E-value=0.12  Score=46.15  Aligned_cols=34  Identities=18%  Similarity=0.323  Sum_probs=31.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      +..+|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            4678999999999999999999999999999764

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.69  E-value=0.069  Score=51.19  Aligned_cols=49  Identities=24%  Similarity=0.255  Sum_probs=44.0

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSF   73 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~   73 (507)
                      .+..+||+|||-|+.-...|..-++.|.+|+=+|.+...||...|+...
T Consensus         5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms   53 (547)
T KOG4405|consen    5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS   53 (547)
T ss_pred             CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence            3578999999999999999999999999999999999999998876543

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.63  E-value=0.094  Score=53.53  Aligned_cols=34  Identities=29%  Similarity=0.169  Sum_probs=31.3

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ..+|+|+|.|.+|.++|..|.+.|.+|++.|.++
T Consensus         8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~   41 (468)
T PRK04690          8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN   41 (468)
T ss_pred             CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence            4579999999999999999999999999999754

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=93.62  E-value=0.11  Score=46.14  Aligned_cols=34  Identities=26%  Similarity=0.389  Sum_probs=31.1

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      ...+|+|||+|-.|...|..|++.|. +++|+|..
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            45789999999999999999999998 69999984

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=93.53  E-value=0.099  Score=52.99  Aligned_cols=33  Identities=21%  Similarity=0.329  Sum_probs=29.4

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCC--CeEEEEecC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDAS--FKVVLLESR   60 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~   60 (507)
                      +++|+|||+|..||..|..|+++|  ++|+.+|.+
T Consensus         1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~   35 (473)
T PLN02353          1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDIS   35 (473)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECC
Confidence            367999999999999999999985  789999974

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=93.51  E-value=0.1  Score=50.80  Aligned_cols=33  Identities=27%  Similarity=0.382  Sum_probs=31.1

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCC-CeEEEEecC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDAS-FKVVLLESR   60 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~   60 (507)
                      +++|+|||||-.|.++|+.|++.| .+|+|.+++
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs   34 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS   34 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence            478999999999999999999999 899999996

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=93.38  E-value=0.16  Score=43.24  Aligned_cols=33  Identities=24%  Similarity=0.389  Sum_probs=30.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEec
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLES   59 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~   59 (507)
                      +..+|+|||||-.|+.-|..|.+.|++|+|+..
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp   44 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP   44 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence            467899999999999999999999999999953

>PRK06223 malate dehydrogenase; Reviewed

Probab=93.30  E-value=0.14  Score=49.11  Aligned_cols=34  Identities=29%  Similarity=0.442  Sum_probs=30.6

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~   61 (507)
                      +++|+|||+|..|.+.|+.|+..|+ +|.++|.+.
T Consensus         2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~   36 (307)
T PRK06223          2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVE   36 (307)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence            3689999999999999999999876 999999854

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=93.28  E-value=0.14  Score=48.89  Aligned_cols=35  Identities=31%  Similarity=0.459  Sum_probs=31.6

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ...+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus       140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~  174 (300)
T TIGR01292       140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD  174 (300)
T ss_pred             CCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence            34689999999999999999999999999999854

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=93.26  E-value=0.12  Score=53.04  Aligned_cols=34  Identities=35%  Similarity=0.496  Sum_probs=31.3

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      -.+|+|||+|..|...|..|+++|++|+|+|++.
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~   38 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA   38 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            4569999999999999999999999999999863

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>TIGR00518 alaDH alanine dehydrogenase

Probab=93.25  E-value=0.15  Score=50.10  Aligned_cols=34  Identities=26%  Similarity=0.458  Sum_probs=31.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ...+|+|||+|..|+.+|..|.+.|.+|++++++
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~  199 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDIN  199 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            4567999999999999999999999999999985

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK12831 putative oxidoreductase; Provisional

Probab=93.24  E-value=0.13  Score=52.50  Aligned_cols=35  Identities=26%  Similarity=0.321  Sum_probs=31.9

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ...+|+|||||.+|+-+|..|.+.|.+|+|+++.+
T Consensus       280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~  314 (464)
T PRK12831        280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS  314 (464)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence            45799999999999999999999999999999744

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.24  E-value=0.13  Score=49.92  Aligned_cols=32  Identities=31%  Similarity=0.379  Sum_probs=29.9

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ++|.|||+|-.|.+-|..|+++|++|+++.++
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~   32 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKKISVNLWGRN   32 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence            36999999999999999999999999999984

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=93.20  E-value=0.12  Score=51.24  Aligned_cols=31  Identities=19%  Similarity=0.393  Sum_probs=28.3

Q ss_pred             eEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +|.|||.|..|+..|..|+. |++|+++|.+.
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~   32 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP   32 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence            69999999999999988885 99999999864

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=93.20  E-value=0.13  Score=50.56  Aligned_cols=34  Identities=32%  Similarity=0.353  Sum_probs=30.3

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCe-EEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFK-VVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~-V~vlE~~~   61 (507)
                      ...|+|||+|..|+-+|..|.+.|.+ |+|+++.+
T Consensus       172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~  206 (352)
T PRK12770        172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT  206 (352)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence            46899999999999999999999986 99998743

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=93.18  E-value=0.19  Score=41.83  Aligned_cols=33  Identities=30%  Similarity=0.502  Sum_probs=29.6

Q ss_pred             CeEEEECc-cHHHHHHHHHHHhCCC--eEEEEecCC
Q 010542           29 PSVIVIGA-GMAGVAAARALHDASF--KVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGa-GiaGL~aA~~L~~~G~--~V~vlE~~~   61 (507)
                      ++|+|||| |-.|.+.|+.|...+.  ++.+++...
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~   36 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE   36 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence            48999999 9999999999999874  799999863

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=93.09  E-value=0.13  Score=48.51  Aligned_cols=32  Identities=19%  Similarity=0.330  Sum_probs=29.8

Q ss_pred             eEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +|.|||.|..|.+.|..|+++|++|.+++++.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            69999999999999999999999999999753

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=93.05  E-value=0.19  Score=48.42  Aligned_cols=37  Identities=22%  Similarity=0.305  Sum_probs=32.5

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRDR   62 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~~   62 (507)
                      -+..+|+|||||..|.+.|+.|+..|+ +|.|+|.+..
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~   41 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN   41 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            345799999999999999999999996 8999998654

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.02  E-value=0.16  Score=51.62  Aligned_cols=35  Identities=17%  Similarity=0.323  Sum_probs=32.0

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ..+|+|+|+|-+|+++|..|+++|++|+++|..+.
T Consensus         5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~   39 (445)
T PRK04308          5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK   39 (445)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            46899999999999999999999999999997654

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.02  E-value=0.14  Score=52.27  Aligned_cols=34  Identities=21%  Similarity=0.389  Sum_probs=31.3

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ..+|+|+|.|.+|+++|..|.+.|++|++.|.++
T Consensus        14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            4579999999999999999999999999999764

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=92.93  E-value=0.16  Score=52.19  Aligned_cols=34  Identities=35%  Similarity=0.527  Sum_probs=31.4

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      -.+|.|||+|..|...|..|+++|++|+|+|.+.
T Consensus         7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~   40 (507)
T PRK08268          7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARA   40 (507)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            4679999999999999999999999999999864

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=92.85  E-value=0.14  Score=48.78  Aligned_cols=34  Identities=29%  Similarity=0.457  Sum_probs=30.1

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ++|.|+|+|..|...|++|+++|..|+++=+.++
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~   34 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR   34 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence            5799999999999999999999988888877553

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=92.73  E-value=0.21  Score=44.45  Aligned_cols=34  Identities=24%  Similarity=0.346  Sum_probs=31.5

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      +.+.|+|+|.|-.|..+|..|.+.|++|++.+.+
T Consensus        27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~   60 (200)
T cd01075          27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN   60 (200)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            4578999999999999999999999999999875

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.60  E-value=0.17  Score=51.96  Aligned_cols=34  Identities=26%  Similarity=0.372  Sum_probs=30.8

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ...+|+|+|.|.+|++++..|.+.|.+|++.|.+
T Consensus        11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~   44 (488)
T PRK03369         11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD   44 (488)
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            3467999999999999999999999999999964

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=92.58  E-value=0.29  Score=36.76  Aligned_cols=34  Identities=38%  Similarity=0.566  Sum_probs=30.4

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhC-CCeEEEEec
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDA-SFKVVLLES   59 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~-G~~V~vlE~   59 (507)
                      -...+++|+|+|..|..+|..|.+. +.+|.++++
T Consensus        21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            3457899999999999999999998 678999988

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=92.52  E-value=0.23  Score=47.58  Aligned_cols=35  Identities=26%  Similarity=0.470  Sum_probs=30.8

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC--eEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF--KVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~~   61 (507)
                      ...+|+|||+|-.|.++|+.|+..|.  ++.|+|.+.
T Consensus         2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~   38 (312)
T cd05293           2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE   38 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            45799999999999999999998875  799999854

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.51  E-value=0.18  Score=51.36  Aligned_cols=34  Identities=29%  Similarity=0.472  Sum_probs=31.0

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ...|+|+|+|-+|+++|..|++.|++|.+.|.+.
T Consensus         5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            4679999999999999999999999999999753

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=92.47  E-value=0.17  Score=41.83  Aligned_cols=33  Identities=30%  Similarity=0.562  Sum_probs=29.7

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      +.+|+|||+|-.|...|..|++.|. +++|+|..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            4689999999999999999999998 79999983

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=92.29  E-value=0.22  Score=50.80  Aligned_cols=36  Identities=36%  Similarity=0.465  Sum_probs=32.4

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ....+|+|||+|..||.|+..+...|.+|.++|.++
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~  198 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP  198 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            457889999999999999999999999999998753

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=92.06  E-value=0.24  Score=44.82  Aligned_cols=32  Identities=25%  Similarity=0.330  Sum_probs=28.6

Q ss_pred             CeEEEEC-ccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           29 PSVIVIG-AGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        29 ~dv~IIG-aGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ++|.||| +|..|.+.|..|+++|++|.++.++
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~   33 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRD   33 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence            4699997 7999999999999999999998763

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=92.04  E-value=0.21  Score=47.18  Aligned_cols=34  Identities=35%  Similarity=0.471  Sum_probs=31.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      +..+|+|||||..|-.-|+.++..|++|+++|.+
T Consensus         2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~   35 (307)
T COG1250           2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS   35 (307)
T ss_pred             CccEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence            3468999999999999999999988999999996

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.87  E-value=0.21  Score=50.68  Aligned_cols=32  Identities=19%  Similarity=0.477  Sum_probs=28.9

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ..+|+|+|.|.+|.++|..|.+ |.+|+|.|..
T Consensus         6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~   37 (454)
T PRK01368          6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL   37 (454)
T ss_pred             CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence            4579999999999999999995 9999999954

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=91.80  E-value=0.3  Score=46.46  Aligned_cols=35  Identities=26%  Similarity=0.435  Sum_probs=32.5

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ...+|+|||.|-.|+.+|..|.+.|.+|++++++.
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46899999999999999999999999999999864

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=91.79  E-value=0.23  Score=50.67  Aligned_cols=35  Identities=23%  Similarity=0.373  Sum_probs=31.2

Q ss_pred             CCCeEEEECccHHHHH-HHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVA-AARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~-aA~~L~~~G~~V~vlE~~~   61 (507)
                      ...+|.|||.|-+|++ +|..|.+.|++|++.|...
T Consensus         6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~   41 (461)
T PRK00421          6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKE   41 (461)
T ss_pred             CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCC
Confidence            4467999999999999 5999999999999999854

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=91.77  E-value=0.33  Score=46.63  Aligned_cols=36  Identities=22%  Similarity=0.468  Sum_probs=31.8

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCC--eEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASF--KVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~~   61 (507)
                      +...+|+|||+|-.|-++|+.|+..|.  ++.|+|.+.
T Consensus         4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~   41 (315)
T PRK00066          4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK   41 (315)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            456799999999999999999999987  799999853

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=91.76  E-value=0.26  Score=47.04  Aligned_cols=34  Identities=24%  Similarity=0.429  Sum_probs=30.9

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      .++|.|||.|..|...|..|++.|++|.+++++.
T Consensus         2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~   35 (296)
T PRK11559          2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP   35 (296)
T ss_pred             CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            3579999999999999999999999999998753

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=91.76  E-value=0.19  Score=44.25  Aligned_cols=37  Identities=24%  Similarity=0.434  Sum_probs=33.4

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +.+...|+|||||..|.-.|-.-+..|+.|.+++++.
T Consensus         8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~   44 (298)
T KOG2304|consen    8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE   44 (298)
T ss_pred             cccccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence            3567889999999999999999999999999999854

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=91.73  E-value=0.28  Score=47.01  Aligned_cols=32  Identities=31%  Similarity=0.534  Sum_probs=29.4

Q ss_pred             eEEEECccHHHHHHHHHHHhCC--CeEEEEecCC
Q 010542           30 SVIVIGAGMAGVAAARALHDAS--FKVVLLESRD   61 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~   61 (507)
                      +|+|||+|-.|.+.|+.|+..|  .+|.+++++.
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~   35 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE   35 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            7999999999999999999998  4899999854

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=91.64  E-value=0.25  Score=47.10  Aligned_cols=33  Identities=18%  Similarity=0.353  Sum_probs=30.5

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      .+|.|||.|..|...|..|+++|++|.+++++.
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~   34 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP   34 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            479999999999999999999999999999853

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=91.63  E-value=0.26  Score=53.07  Aligned_cols=35  Identities=20%  Similarity=0.291  Sum_probs=32.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      .-.+|+|||||..|...|+.++.+|++|+++|.+.
T Consensus       312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~  346 (715)
T PRK11730        312 PVKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ  346 (715)
T ss_pred             ccceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence            34679999999999999999999999999999864

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=91.62  E-value=0.29  Score=45.49  Aligned_cols=34  Identities=26%  Similarity=0.418  Sum_probs=31.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      ...+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            46789999999999999999999995 89999974

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=91.56  E-value=0.23  Score=53.33  Aligned_cols=35  Identities=20%  Similarity=0.275  Sum_probs=32.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +-.+|+|||||..|...|+.++.+|++|+++|.+.
T Consensus       312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~  346 (714)
T TIGR02437       312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ  346 (714)
T ss_pred             ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence            45679999999999999999999999999999864

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=91.52  E-value=0.28  Score=50.00  Aligned_cols=35  Identities=29%  Similarity=0.397  Sum_probs=31.4

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~   61 (507)
                      ...+|+|||||.+|+-+|..|.+.|. +|+|+++.+
T Consensus       272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~  307 (457)
T PRK11749        272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG  307 (457)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            45789999999999999999999997 899999743

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=91.48  E-value=0.31  Score=45.99  Aligned_cols=34  Identities=29%  Similarity=0.452  Sum_probs=31.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      ...+|+|||+|-+|-++|+.|++.|. +|+|++++
T Consensus       126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~  160 (284)
T PRK12549        126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD  160 (284)
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence            45789999999999999999999997 79999885

>PTZ00117 malate dehydrogenase; Provisional

Probab=91.48  E-value=0.34  Score=46.68  Aligned_cols=36  Identities=25%  Similarity=0.338  Sum_probs=31.9

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCC-CeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~~   61 (507)
                      .+..+|+|||||-.|-+.|+.|+..| .++.|+|.+.
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~   39 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK   39 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence            35679999999999999999999988 5899999864

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=91.46  E-value=0.22  Score=46.88  Aligned_cols=37  Identities=38%  Similarity=0.381  Sum_probs=30.9

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      .=+.+||+|||||-+|+-||.-|+--=..|+|+|=.+
T Consensus       351 LF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~  387 (520)
T COG3634         351 LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP  387 (520)
T ss_pred             ccCCceEEEECCCcchHHHHHhHHhhhheeeeeecch
Confidence            3467999999999999999999986545799999644

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=91.44  E-value=0.5  Score=46.88  Aligned_cols=33  Identities=33%  Similarity=0.556  Sum_probs=31.2

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +||+|||||++|+++|+.|++.|++|+|+|+..
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~   33 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ   33 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            689999999999999999999999999999864

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=91.44  E-value=0.32  Score=48.18  Aligned_cols=35  Identities=23%  Similarity=0.353  Sum_probs=32.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ....|+|+|+|..|+.+|..|...|.+|+|+|.++
T Consensus       201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~  235 (413)
T cd00401         201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP  235 (413)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            56789999999999999999999999999999864

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.36  E-value=0.29  Score=50.14  Aligned_cols=33  Identities=33%  Similarity=0.498  Sum_probs=30.4

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ..+|.|+|.|-+|+++|..|.+.|.+|++.|+.
T Consensus        15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~   47 (473)
T PRK00141         15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDN   47 (473)
T ss_pred             CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence            456999999999999999999999999999974

>PLN02256 arogenate dehydrogenase

Probab=91.35  E-value=0.4  Score=45.70  Aligned_cols=36  Identities=19%  Similarity=0.280  Sum_probs=32.2

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      .+.++|+|||.|..|-+.|..|.+.|++|.+++.+.
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~   69 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD   69 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence            467789999999999999999999999999998753

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=91.32  E-value=0.41  Score=38.23  Aligned_cols=31  Identities=29%  Similarity=0.550  Sum_probs=28.0

Q ss_pred             EEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           31 VIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        31 v~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      |+|+|.|-.|...|..|.+.+.+|+++|.+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~   31 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP   31 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence            7999999999999999999777999999975

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=91.30  E-value=0.33  Score=44.12  Aligned_cols=34  Identities=35%  Similarity=0.596  Sum_probs=30.1

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC---eEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF---KVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~---~V~vlE~~   60 (507)
                      +..+|+|+|||-+|..+|..|.+.|.   +|.|++++
T Consensus        24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            45789999999999999999999996   48888885

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=91.30  E-value=0.3  Score=45.67  Aligned_cols=34  Identities=24%  Similarity=0.359  Sum_probs=31.4

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      .+|++||-|..|...|.+|.++|+.|+|+.++..
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~   34 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPE   34 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChh
Confidence            4799999999999999999999999999999643

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.17  E-value=0.29  Score=50.50  Aligned_cols=34  Identities=29%  Similarity=0.521  Sum_probs=31.0

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ..+|.|||.|-+|+++|..|.+.|++|.+.|...
T Consensus         7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            4579999999999999999999999999999754

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.08  E-value=0.32  Score=48.93  Aligned_cols=33  Identities=27%  Similarity=0.416  Sum_probs=30.4

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      .+|+|||-|.+|+++|..|.++|++|++.|.+.
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~   36 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL   36 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            579999999999999999999999999999753

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=91.06  E-value=0.26  Score=46.85  Aligned_cols=32  Identities=22%  Similarity=0.317  Sum_probs=29.6

Q ss_pred             eEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +|.|||.|..|...|..|++.|++|++++++.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~   32 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP   32 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            48999999999999999999999999998853

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=91.00  E-value=0.28  Score=46.82  Aligned_cols=31  Identities=35%  Similarity=0.523  Sum_probs=28.4

Q ss_pred             EEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Q 010542           31 VIVIGAGMAGVAAARALHDASF-KVVLLESRD   61 (507)
Q Consensus        31 v~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~   61 (507)
                      |+|||+|..|.+.|+.|+..|. +|+++|.+.
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e   32 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE   32 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence            6899999999999999999876 999999864

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=90.84  E-value=0.31  Score=49.40  Aligned_cols=33  Identities=18%  Similarity=0.302  Sum_probs=31.1

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      .+|.|||.|..|...|..|+++|++|.+++++.
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~   34 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTY   34 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            589999999999999999999999999999864

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=90.80  E-value=0.2  Score=49.28  Aligned_cols=39  Identities=36%  Similarity=0.507  Sum_probs=32.2

Q ss_pred             cCCcccCceeEEEEeeCCcEEEEEcCCc-EEEcCEEEEecCchh
Q 010542          254 GLDIRLGHRVTKITRHYIGVKVTVEGGK-TFVADAVVVAVPLGV  296 (507)
Q Consensus       254 g~~i~~~~~V~~I~~~~~~v~v~~~~g~-~~~ad~VI~a~p~~~  296 (507)
                      |++|++++.|++|+.++    |++.+|+ ++.++.||.|++...
T Consensus       223 GV~v~l~~~Vt~v~~~~----v~~~~g~~~I~~~tvvWaaGv~a  262 (405)
T COG1252         223 GVEVLLGTPVTEVTPDG----VTLKDGEEEIPADTVVWAAGVRA  262 (405)
T ss_pred             CCEEEcCCceEEECCCc----EEEccCCeeEecCEEEEcCCCcC
Confidence            99999999999998754    4556676 599999999998654

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=90.80  E-value=0.42  Score=45.20  Aligned_cols=35  Identities=23%  Similarity=0.401  Sum_probs=32.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ...+|+|||.|-.|.+.|..|+..|.+|+|++++.
T Consensus       150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~  184 (287)
T TIGR02853       150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS  184 (287)
T ss_pred             CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            45789999999999999999999999999999864

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=90.75  E-value=0.36  Score=47.61  Aligned_cols=35  Identities=26%  Similarity=0.436  Sum_probs=32.0

Q ss_pred             CCCCeEEEEC-ccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           26 ARSPSVIVIG-AGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIG-aGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      +...+|+||| .|..|-+.|..|.++|++|.+++++
T Consensus        96 ~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~  131 (374)
T PRK11199         96 PDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD  131 (374)
T ss_pred             cccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence            4567899999 8999999999999999999999984

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=90.73  E-value=0.42  Score=42.92  Aligned_cols=34  Identities=26%  Similarity=0.329  Sum_probs=30.8

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      ...+|+|||+|-.|...|..|++.|. +++|+|..
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            45789999999999999999999997 69999984

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=90.67  E-value=0.33  Score=52.94  Aligned_cols=35  Identities=23%  Similarity=0.344  Sum_probs=31.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCe-EEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFK-VVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~-V~vlE~~~   61 (507)
                      ...+|+|||||.+|+-+|..|.+.|.+ |+|+++.+
T Consensus       569 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~  604 (752)
T PRK12778        569 FGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS  604 (752)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            457899999999999999999999986 99999754

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=90.56  E-value=0.31  Score=52.54  Aligned_cols=35  Identities=29%  Similarity=0.461  Sum_probs=32.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +-.+|+|||||..|...|+.++..|++|+++|.+.
T Consensus       334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~  368 (737)
T TIGR02441       334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP  368 (737)
T ss_pred             cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence            44679999999999999999999999999999864

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=90.43  E-value=0.5  Score=48.07  Aligned_cols=36  Identities=36%  Similarity=0.489  Sum_probs=32.2

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ....+|+|+|+|..|+.++..+...|.+|.++|.+.
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~  197 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP  197 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            346789999999999999999999999999999854

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=90.39  E-value=0.45  Score=41.25  Aligned_cols=31  Identities=26%  Similarity=0.289  Sum_probs=28.6

Q ss_pred             eEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           30 SVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      +|+|||+|-.|...|..|++.|. +++|+|..
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D   32 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD   32 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            48999999999999999999998 69999984

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=90.37  E-value=0.44  Score=46.20  Aligned_cols=34  Identities=38%  Similarity=0.588  Sum_probs=31.4

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      ...+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46789999999999999999999998 89999983

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=90.28  E-value=0.44  Score=45.49  Aligned_cols=32  Identities=22%  Similarity=0.301  Sum_probs=30.0

Q ss_pred             eEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +|.|||.|..|...|..|++.|++|.+++++.
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~   33 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQ   33 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCH
Confidence            79999999999999999999999999998854

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=90.26  E-value=0.43  Score=45.58  Aligned_cols=31  Identities=29%  Similarity=0.497  Sum_probs=28.2

Q ss_pred             eEEEECccHHHHHHHHHHHhCCC--eEEEEecC
Q 010542           30 SVIVIGAGMAGVAAARALHDASF--KVVLLESR   60 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~   60 (507)
                      +|+|||+|-.|.++|+.|...|.  ++.|+|.+
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   33 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVN   33 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            58999999999999999998875  79999974

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=90.25  E-value=0.39  Score=51.61  Aligned_cols=35  Identities=20%  Similarity=0.292  Sum_probs=31.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHH-hCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALH-DASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~-~~G~~V~vlE~~~   61 (507)
                      +..+|+|||||..|..-|..++ +.|++|+++|.++
T Consensus       303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~  338 (699)
T TIGR02440       303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINP  338 (699)
T ss_pred             cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence            4467999999999999999998 5899999999864

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=90.20  E-value=0.55  Score=41.58  Aligned_cols=34  Identities=29%  Similarity=0.451  Sum_probs=30.3

Q ss_pred             CCCeEEEECc-cHHHHHHHHHHHhCCCeEEEEecC
Q 010542           27 RSPSVIVIGA-GMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGa-GiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      +..+++|+|| |-.|..+|..|++.|++|.++.++
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            4578999997 999999999999999999999764

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=90.11  E-value=0.51  Score=44.29  Aligned_cols=34  Identities=32%  Similarity=0.423  Sum_probs=31.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ...+++|+|+|-+|.++|+.|++.|.+|+|+.++
T Consensus       116 ~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~  149 (270)
T TIGR00507       116 PNQRVLIIGAGGAARAVALPLLKADCNVIIANRT  149 (270)
T ss_pred             cCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4568999999999999999999999999999875

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=90.11  E-value=0.66  Score=46.20  Aligned_cols=41  Identities=24%  Similarity=0.415  Sum_probs=34.7

Q ss_pred             CCCCCCCCCeEEEECc-cHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           21 AGKGQARSPSVIVIGA-GMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        21 ~~~~~~~~~dv~IIGa-GiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      .++...+.++|+|+|| |..|...+..|.++|++|.++.++.
T Consensus        53 ~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~   94 (390)
T PLN02657         53 FRSKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK   94 (390)
T ss_pred             ccccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence            3444566788999998 9999999999999999999998753

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.05  E-value=0.4  Score=49.01  Aligned_cols=33  Identities=33%  Similarity=0.490  Sum_probs=30.4

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ..+|.|||.|-+|+++|.+|.+.|++|.+.|..
T Consensus         9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~   41 (460)
T PRK01390          9 GKTVAVFGLGGSGLATARALVAGGAEVIAWDDN   41 (460)
T ss_pred             CCEEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence            357999999999999999999999999999964

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=89.97  E-value=0.39  Score=51.69  Aligned_cols=35  Identities=23%  Similarity=0.260  Sum_probs=31.5

Q ss_pred             CCCeEEEECccHHHHHHHHHHH-hCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALH-DASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~-~~G~~V~vlE~~~   61 (507)
                      .-.+|+|||||..|...|+.++ ..|++|+++|.+.
T Consensus       308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~  343 (708)
T PRK11154        308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP  343 (708)
T ss_pred             cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence            4567999999999999999999 8899999999854

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=89.90  E-value=0.51  Score=34.79  Aligned_cols=34  Identities=29%  Similarity=0.526  Sum_probs=27.7

Q ss_pred             HHHHHh-ccCCcccCceeEEEEeeCCcEEEEEcCC
Q 010542          247 VINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGG  280 (507)
Q Consensus       247 l~~~l~-~g~~i~~~~~V~~I~~~~~~v~v~~~~g  280 (507)
                      +.+.|. .|+++++|+.|++|..+++++.|+++||
T Consensus        46 ~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g   80 (80)
T PF00070_consen   46 LEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG   80 (80)
T ss_dssp             HHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred             HHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence            344554 3899999999999999998877888876

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=89.88  E-value=0.49  Score=45.84  Aligned_cols=34  Identities=35%  Similarity=0.574  Sum_probs=31.1

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      +..+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D   57 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRD   57 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            45789999999999999999999998 89999984

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=89.82  E-value=0.64  Score=39.31  Aligned_cols=35  Identities=31%  Similarity=0.447  Sum_probs=30.7

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCC-CeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~~   61 (507)
                      +..+|+|||+|..|.+.|..|.+.| .+|.++.++.
T Consensus        18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~   53 (155)
T cd01065          18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL   53 (155)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence            4578999999999999999999986 7899998753

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=89.80  E-value=0.63  Score=44.40  Aligned_cols=32  Identities=25%  Similarity=0.304  Sum_probs=29.3

Q ss_pred             CeEEEECc-cHHHHHHHHHHHhCCC--eEEEEecC
Q 010542           29 PSVIVIGA-GMAGVAAARALHDASF--KVVLLESR   60 (507)
Q Consensus        29 ~dv~IIGa-GiaGL~aA~~L~~~G~--~V~vlE~~   60 (507)
                      ++|+|||+ |-.|.++|+.|+..|.  ++.++|.+
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~   35 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV   35 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence            48999999 9999999999998884  79999986

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.64  E-value=0.43  Score=47.55  Aligned_cols=31  Identities=19%  Similarity=0.211  Sum_probs=28.3

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ++|.|||.|-+|+++|..|. +|.+|++.|..
T Consensus         1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~   31 (401)
T PRK03815          1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDK   31 (401)
T ss_pred             CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCC
Confidence            36899999999999999999 99999999954

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=89.58  E-value=0.58  Score=42.94  Aligned_cols=34  Identities=29%  Similarity=0.506  Sum_probs=30.7

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      +..+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus        23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D   57 (240)
T TIGR02355        23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD   57 (240)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            45789999999999999999999996 79999874

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>TIGR00936 ahcY adenosylhomocysteinase

Probab=89.56  E-value=0.59  Score=46.22  Aligned_cols=36  Identities=22%  Similarity=0.302  Sum_probs=32.7

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      .....|+|||.|..|+.+|..|+..|.+|+|+|.++
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp  228 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP  228 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence            456799999999999999999999999999999754

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=89.54  E-value=0.54  Score=44.93  Aligned_cols=32  Identities=28%  Similarity=0.312  Sum_probs=30.0

Q ss_pred             eEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +|.|||.|..|...|..|.++|++|.+++++.
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~   33 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNP   33 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCeEEEEECCH
Confidence            69999999999999999999999999998853

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.41  E-value=0.56  Score=47.73  Aligned_cols=36  Identities=25%  Similarity=0.453  Sum_probs=31.7

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ...--|+|||.|-+|+++|..|.+.|++|++.|...
T Consensus         4 ~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   39 (448)
T PRK03803          4 QSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE   39 (448)
T ss_pred             ccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence            334569999999999999999999999999999754

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=89.37  E-value=0.62  Score=41.53  Aligned_cols=34  Identities=32%  Similarity=0.488  Sum_probs=31.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      ...+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            46789999999999999999999997 89999973

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=89.36  E-value=0.69  Score=43.38  Aligned_cols=36  Identities=31%  Similarity=0.434  Sum_probs=32.5

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ..+.|+|||.|..|-+-|..|.++|+.|.|+.+...
T Consensus         2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~   37 (279)
T COG0287           2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRS   37 (279)
T ss_pred             CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCc
Confidence            357899999999999999999999999999998543

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=89.34  E-value=0.47  Score=52.13  Aligned_cols=35  Identities=29%  Similarity=0.320  Sum_probs=31.6

Q ss_pred             CCCeEEEECccHHHHHH-HHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAA-ARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~a-A~~L~~~G~~V~vlE~~~   61 (507)
                      +...|.|||.|-+|+++ |..|.++|++|++.|.+.
T Consensus         3 ~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~   38 (809)
T PRK14573          3 KSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSE   38 (809)
T ss_pred             CcceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCC
Confidence            44569999999999999 999999999999999754

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=89.19  E-value=0.67  Score=42.72  Aligned_cols=34  Identities=29%  Similarity=0.479  Sum_probs=30.9

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      ...+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            46889999999999999999999997 79999873

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=89.18  E-value=0.65  Score=38.76  Aligned_cols=31  Identities=26%  Similarity=0.432  Sum_probs=28.7

Q ss_pred             eEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           30 SVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      +|+|||+|-.|...|..|++.|. +++|++..
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            48999999999999999999998 79999974

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PLN02712 arogenate dehydrogenase

Probab=89.09  E-value=0.75  Score=48.96  Aligned_cols=35  Identities=20%  Similarity=0.249  Sum_probs=31.8

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ..+++|+|||.|..|-+.|..|.+.|++|.+++++
T Consensus        50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~   84 (667)
T PLN02712         50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRS   84 (667)
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            45678999999999999999999999999999875

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=89.06  E-value=0.58  Score=41.22  Aligned_cols=32  Identities=31%  Similarity=0.375  Sum_probs=28.8

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEec
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLES   59 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~   59 (507)
                      ++.++|+|+|--|.+-|.+|+++|++|.|-=+
T Consensus         1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~   32 (211)
T COG2085           1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSS   32 (211)
T ss_pred             CcEEEEeccChHHHHHHHHHHhCCCeEEEecC
Confidence            46799999999999999999999999988643

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=89.01  E-value=0.59  Score=51.93  Aligned_cols=35  Identities=29%  Similarity=0.403  Sum_probs=31.8

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ...+|+|||||.+|+-||..+.+.|.+|+++.+.+
T Consensus       446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~  480 (944)
T PRK12779        446 KGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT  480 (944)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence            45789999999999999999999999999998754

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=88.90  E-value=0.71  Score=44.30  Aligned_cols=34  Identities=26%  Similarity=0.418  Sum_probs=29.9

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCC--eEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASF--KVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~~   61 (507)
                      ..+|+|||+|..|.+.|..|.+.|.  +|.+++++.
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            3579999999999999999999985  899998753

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=88.87  E-value=0.52  Score=47.96  Aligned_cols=35  Identities=20%  Similarity=0.317  Sum_probs=31.8

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +..+|+|||+|.+|+-.|..|++.+.+|+++.+..
T Consensus       203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~  237 (461)
T PLN02172        203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS  237 (461)
T ss_pred             CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence            56889999999999999999999999999998743

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.75  E-value=0.63  Score=47.20  Aligned_cols=34  Identities=18%  Similarity=0.414  Sum_probs=31.0

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ..+|.|||-|-+|++++..|++.|++|++.|...
T Consensus         6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~   39 (438)
T PRK03806          6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI   39 (438)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            4679999999999999999999999999999754

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=88.73  E-value=0.6  Score=47.60  Aligned_cols=33  Identities=24%  Similarity=0.505  Sum_probs=30.7

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ++|+|+|+|-.|...|..|.+.|++|.++|++.
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~   33 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDE   33 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            479999999999999999999999999999864

>PRK08328 hypothetical protein; Provisional

Probab=88.66  E-value=0.67  Score=42.27  Aligned_cols=34  Identities=26%  Similarity=0.490  Sum_probs=30.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      ...+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            45789999999999999999999997 79999863

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=88.64  E-value=0.67  Score=43.41  Aligned_cols=33  Identities=15%  Similarity=0.211  Sum_probs=29.2

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCC---CeEEEEecC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDAS---FKVVLLESR   60 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G---~~V~vlE~~   60 (507)
                      +++|.|||+|..|.+.|..|.+.|   .+|.+++++
T Consensus         2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~   37 (267)
T PRK11880          2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPS   37 (267)
T ss_pred             CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCC
Confidence            568999999999999999999988   678888874

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=88.60  E-value=1  Score=34.46  Aligned_cols=31  Identities=32%  Similarity=0.519  Sum_probs=27.6

Q ss_pred             eEEEECccHHHHHHHHHHHhCC---CeEEEE-ecC
Q 010542           30 SVIVIGAGMAGVAAARALHDAS---FKVVLL-ESR   60 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G---~~V~vl-E~~   60 (507)
                      +|.|||+|-.|.+-+..|.+.|   .+|.+. +++
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~   35 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRS   35 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCc
Confidence            5899999999999999999999   788865 764

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=88.55  E-value=1.1  Score=37.66  Aligned_cols=35  Identities=29%  Similarity=0.404  Sum_probs=29.1

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +...|+|||-|--|.+-|..|.+.|.+|.|-++.+
T Consensus         3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~   37 (165)
T PF07991_consen    3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREG   37 (165)
T ss_dssp             CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TT
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCC
Confidence            35789999999999999999999999999988854

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	507
2hko_A	664	Crystal Structure Of Lsd1 Length = 664		8e-41
2dw4_A	660	Crystal Structure Of Human Lsd1 At 2.3 A Resolution		9e-41
2v1d_A	730	Structural Basis Of Lsd1-Corest Selectivity In Hist		9e-41
2h94_A	664	Crystal Structure And Mechanism Of Human Lysine-Spe		1e-40
2iw5_A	666	Structural Basis For Corest-dependent Demethylation		1e-40
2ejr_A	662	Lsd1-Tranylcypromine Complex Length = 662		1e-40
2xaf_A	852	Crystal Structure Of Lsd1-Corest In Complex With Pa		2e-40
2x0l_A	734	Crystal Structure Of A Neuro-Specific Splicing Vari		3e-40
4fwe_A	796	Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup		3e-39
4gu1_A	784	Crystal Structure Of Lsd2 Length = 784		3e-39
4gur_A	776	Crystal Structure Of Lsd2-npac With H3 In Space Gro		4e-39
1b37_A	472	A 30 Angstrom U-Shaped Catalytic Tunnel In The Crys		2e-30
3kpf_A	478	X-Ray Structure Of The Mutant Lys300met Of Polyamin		1e-29
4gdp_A	516	Yeast Polyamine Oxidase Fms1, N195a Mutant Length =		3e-16
1z6l_A	516	Crystal Structure Of Fms1 In Complex With Its Subst		3e-16
1yy5_A	513	Crystal Structure Of Fms1, A Polyamine Oxidase From		4e-16
4ech_A	516	Yeast Polyamine Oxidase Fms1, H67q Mutant Length =		6e-16
1rsg_A	516	Crystal Structure Of The Polyamine Oxidase Fms1 Fro		2e-15
2c72_A	520	Functional Role Of The Aromatic Cage In Human Monoa		2e-15
1gos_A	520	Human Monoamine Oxidase B Length = 520		2e-15
2xfu_A	519	Human Monoamine Oxidase B With Tranylcypromine Leng		3e-15
2c73_A	520	Functional Role Of The Aromatic Cage In Human Monoa		3e-15
2c76_A	520	Functional Role Of The Aromatic Cage In Human Monoa		3e-15
2c75_A	520	Functional Role Of The Aromatic Cage In Human Monoa		3e-15
2bk4_A	520	Human Monoamine Oxidase B: I199f Mutant In Complex		7e-15
2xfo_A	520	Tranylcypromine-Inhibited Human Monoamine Oxidase B		1e-14
3zyx_A	519	Crystal Structure Of Human Monoamine Oxidase B In C		1e-13
2z5y_A	513	Crystal Structure Of Human Monoamine Oxidase A (G11		5e-12
2bxr_A	527	Human Monoamine Oxidase A In Complex With Clorgylin		5e-12
2z5x_A	513	Crystal Structure Of Human Monoamine Oxidase A With		6e-12
1o5w_A	534	The Structure Basis Of Specific Recognitions For Su		3e-10
3kve_A	486	Structure Of Native L-Amino Acid Oxidase From Viper		5e-10
4e0v_A	497	Structure Of L-Amino Acid Oxidase From The B. Jarar		8e-10
2vvm_A	495	The Structure Of Mao-N-D5, A Variant Of Monoamine O		4e-09
2vvl_A	495	The Structure Of Mao-N-D3, A Variant Of Monoamine O		9e-09
2vvl_G	495	The Structure Of Mao-N-D3, A Variant Of Monoamine O		1e-08
2yg7_A	453	Structure-Based Redesign Of Cofactor Binding In Put		4e-08
3k7m_X	431	Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase F		1e-07
3k7t_A	425	Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine		1e-07
1reo_A	486	L-Amino Acid Oxidase From Agkistrodon Halys Pallas		1e-07
2yg6_A	453	Structure-Based Redesign Of Cofactor Binding In Put		3e-07
2yg3_A	453	Structure-Based Redesign Of Cofactor Binding In Put		5e-05
2yg5_A	453	Structure-Based Redesign Of Cofactor Binding In Put		8e-05
3rha_A	482	The Crystal Structure Of Oxidoreductase From Arthro		4e-04

>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1 Length = 664

Iteration: 1
 Score =  164 bits (416), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 155/532 (29%), Positives = 232/532 (43%), Gaps = 113/532 (21%)
Query: 47  LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGL---- 102
           L      V LLE+RDRVGGRV T     +  DLGA  + G+   NP+A V  ++ +    
Sbjct: 126 LQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAK 184
Query: 103 -----PLYRTSGD--------------NSVL-----YDHDLESRVLKTVVVSLIQANLCY 138
                PLY  +G               N +L       H L+  VL    VSL QA    
Sbjct: 185 IKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQA--LE 242
Query: 139 ALFDMDGNQVPQELV------TKVGEAFESILKE----TDKVREEHDE-----DMSIQRA 183
            +  +    V  E +       K  E  + +L +     +K++E H +     ++   R 
Sbjct: 243 VVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRD 302
Query: 184 ISIVF---------------------------DRRPELR--------LEGLAHKVLQWYL 208
           I+  F                           ++  EL         L     ++L W+ 
Sbjct: 303 ITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHF 362
Query: 209 CRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKI 266
             +E   A    T+SLK WD+++     G H  +  GY  V   LA+GLDI+L   V ++
Sbjct: 363 ANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQV 422
Query: 267 TRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDD 318
                G +V    T    +TF+   DAV+  +PLGVLK +   ++F P LP+WK +A+  
Sbjct: 423 QYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQR 482
Query: 319 LGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---CSYFLNLHKATGHCVLVYMPAGQ 374
           +G G  NK+++ FD+VFW P+V   G V  T+        F NL+KA    +L+ + AG+
Sbjct: 483 MGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLALVAGE 539
Query: 375 LARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSH 432
            A  +E +SD+         LK I   ++   P + +VS W  D  + GSYSY   G S 
Sbjct: 540 AAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSG 599
Query: 433 DLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 471
           + Y+ +  P+               LFFAGE T  +YP +VHGA  +GL  A
Sbjct: 600 NDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 651

>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution Length = 660

Iteration: 1
 Score =  164 bits (416), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 155/532 (29%), Positives = 232/532 (43%), Gaps = 113/532 (21%)
Query: 47  LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGL---- 102
           L      V LLE+RDRVGGRV T     +  DLGA  + G+   NP+A V  ++ +    
Sbjct: 126 LQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAK 184
Query: 103 -----PLYRTSGD--------------NSVL-----YDHDLESRVLKTVVVSLIQANLCY 138
                PLY  +G               N +L       H L+  VL    VSL QA    
Sbjct: 185 IKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQA--LE 242
Query: 139 ALFDMDGNQVPQELV------TKVGEAFESILKE----TDKVREEHDE-----DMSIQRA 183
            +  +    V  E +       K  E  + +L +     +K++E H +     ++   R 
Sbjct: 243 VVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRD 302
Query: 184 ISIVF---------------------------DRRPELR--------LEGLAHKVLQWYL 208
           I+  F                           ++  EL         L     ++L W+ 
Sbjct: 303 ITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHF 362
Query: 209 CRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKI 266
             +E   A    T+SLK WD+++     G H  +  GY  V   LA+GLDI+L   V ++
Sbjct: 363 ANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQV 422
Query: 267 TRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDD 318
                G +V    T    +TF+   DAV+  +PLGVLK +   ++F P LP+WK +A+  
Sbjct: 423 RYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQR 482
Query: 319 LGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---CSYFLNLHKATGHCVLVYMPAGQ 374
           +G G  NK+++ FD+VFW P+V   G V  T+        F NL+KA    +L+ + AG+
Sbjct: 483 MGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLALVAGE 539
Query: 375 LARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSH 432
            A  +E +SD+         LK I   ++   P + +VS W  D  + GSYSY   G S 
Sbjct: 540 AAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSG 599
Query: 433 DLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 471
           + Y+ +  P+               LFFAGE T  +YP +VHGA  +GL  A
Sbjct: 600 NDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 651

>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3 Recognition Length = 730

Iteration: 1
 Score =  164 bits (416), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 155/532 (29%), Positives = 232/532 (43%), Gaps = 113/532 (21%)
Query: 47  LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGL---- 102
           L      V LLE+RDRVGGRV T     +  DLGA  + G+   NP+A V  ++ +    
Sbjct: 175 LQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAK 233
Query: 103 -----PLYRTSGD--------------NSVL-----YDHDLESRVLKTVVVSLIQANLCY 138
                PLY  +G               N +L       H L+  VL    VSL QA    
Sbjct: 234 IKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQA--LE 291
Query: 139 ALFDMDGNQVPQELV------TKVGEAFESILKE----TDKVREEHDE-----DMSIQRA 183
            +  +    V  E +       K  E  + +L +     +K++E H +     ++   R 
Sbjct: 292 VVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRD 351
Query: 184 ISIVF---------------------------DRRPELR--------LEGLAHKVLQWYL 208
           I+  F                           ++  EL         L     ++L W+ 
Sbjct: 352 ITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHF 411
Query: 209 CRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKI 266
             +E   A    T+SLK WD+++     G H  +  GY  V   LA+GLDI+L   V ++
Sbjct: 412 ANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQV 471
Query: 267 TRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDD 318
                G +V    T    +TF+   DAV+  +PLGVLK +   ++F P LP+WK +A+  
Sbjct: 472 RYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQR 531
Query: 319 LGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---CSYFLNLHKATGHCVLVYMPAGQ 374
           +G G  NK+++ FD+VFW P+V   G V  T+        F NL+KA    +L+ + AG+
Sbjct: 532 MGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLALVAGE 588
Query: 375 LARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSH 432
            A  +E +SD+         LK I   ++   P + +VS W  D  + GSYSY   G S 
Sbjct: 589 AAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSG 648
Query: 433 DLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 471
           + Y+ +  P+               LFFAGE T  +YP +VHGA  +GL  A
Sbjct: 649 NDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 700

>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific Demethylase-1 Length = 664

Iteration: 1
 Score =  164 bits (415), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 155/532 (29%), Positives = 232/532 (43%), Gaps = 113/532 (21%)
Query: 47  LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGL---- 102
           L      V LLE+RDRVGGRV T     +  DLGA  + G+   NP+A V  ++ +    
Sbjct: 126 LQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAK 184
Query: 103 -----PLYRTSGD--------------NSVL-----YDHDLESRVLKTVVVSLIQANLCY 138
                PLY  +G               N +L       H L+  VL    VSL QA    
Sbjct: 185 IKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQA--LE 242
Query: 139 ALFDMDGNQVPQELV------TKVGEAFESILKE----TDKVREEHDE-----DMSIQRA 183
            +  +    V  E +       K  E  + +L +     +K++E H +     ++   R 
Sbjct: 243 VVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRD 302
Query: 184 ISIVF---------------------------DRRPELR--------LEGLAHKVLQWYL 208
           I+  F                           ++  EL         L     ++L W+ 
Sbjct: 303 ITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHF 362
Query: 209 CRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKI 266
             +E   A    T+SLK WD+++     G H  +  GY  V   LA+GLDI+L   V ++
Sbjct: 363 ANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQV 422
Query: 267 TRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDD 318
                G +V    T    +TF+   DAV+  +PLGVLK +   ++F P LP+WK +A+  
Sbjct: 423 RYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQR 482
Query: 319 LGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---CSYFLNLHKATGHCVLVYMPAGQ 374
           +G G  NK+++ FD+VFW P+V   G V  T+        F NL+KA    +L+ + AG+
Sbjct: 483 MGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLALVAGE 539
Query: 375 LARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSH 432
            A  +E +SD+         LK I   ++   P + +VS W  D  + GSYSY   G S 
Sbjct: 540 AAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSG 599
Query: 433 DLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 471
           + Y+ +  P+               LFFAGE T  +YP +VHGA  +GL  A
Sbjct: 600 NDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 651

>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of Nucleosomes By The Human Lsd1 Histone Demethylase Length = 666

Iteration: 1
 Score =  164 bits (415), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 155/532 (29%), Positives = 232/532 (43%), Gaps = 113/532 (21%)
Query: 47  LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGL---- 102
           L      V LLE+RDRVGGRV T     +  DLGA  + G+   NP+A V  ++ +    
Sbjct: 127 LQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAK 185
Query: 103 -----PLYRTSGD--------------NSVL-----YDHDLESRVLKTVVVSLIQANLCY 138
                PLY  +G               N +L       H L+  VL    VSL QA    
Sbjct: 186 IKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQA--LE 243
Query: 139 ALFDMDGNQVPQELV------TKVGEAFESILKE----TDKVREEHDE-----DMSIQRA 183
            +  +    V  E +       K  E  + +L +     +K++E H +     ++   R 
Sbjct: 244 VVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRD 303
Query: 184 ISIVF---------------------------DRRPELR--------LEGLAHKVLQWYL 208
           I+  F                           ++  EL         L     ++L W+ 
Sbjct: 304 ITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHF 363
Query: 209 CRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKI 266
             +E   A    T+SLK WD+++     G H  +  GY  V   LA+GLDI+L   V ++
Sbjct: 364 ANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQV 423
Query: 267 TRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDD 318
                G +V    T    +TF+   DAV+  +PLGVLK +   ++F P LP+WK +A+  
Sbjct: 424 RYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQR 483
Query: 319 LGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---CSYFLNLHKATGHCVLVYMPAGQ 374
           +G G  NK+++ FD+VFW P+V   G V  T+        F NL+KA    +L+ + AG+
Sbjct: 484 MGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLALVAGE 540
Query: 375 LARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSH 432
            A  +E +SD+         LK I   ++   P + +VS W  D  + GSYSY   G S 
Sbjct: 541 AAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSG 600
Query: 433 DLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 471
           + Y+ +  P+               LFFAGE T  +YP +VHGA  +GL  A
Sbjct: 601 NDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 652

>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex Length = 662

Iteration: 1
 Score =  164 bits (415), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 155/532 (29%), Positives = 232/532 (43%), Gaps = 113/532 (21%)
Query: 47  LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGL---- 102
           L      V LLE+RDRVGGRV T     +  DLGA  + G+   NP+A V  ++ +    
Sbjct: 126 LQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAK 184
Query: 103 -----PLYRTSGD--------------NSVL-----YDHDLESRVLKTVVVSLIQANLCY 138
                PLY  +G               N +L       H L+  VL    VSL QA    
Sbjct: 185 IKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQA--LE 242
Query: 139 ALFDMDGNQVPQELV------TKVGEAFESILKE----TDKVREEHDE-----DMSIQRA 183
            +  +    V  E +       K  E  + +L +     +K++E H +     ++   R 
Sbjct: 243 VVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRD 302
Query: 184 ISIVF---------------------------DRRPELR--------LEGLAHKVLQWYL 208
           I+  F                           ++  EL         L     ++L W+ 
Sbjct: 303 ITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHF 362
Query: 209 CRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKI 266
             +E   A    T+SLK WD+++     G H  +  GY  V   LA+GLDI+L   V ++
Sbjct: 363 ANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQV 422
Query: 267 TRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDD 318
                G +V    T    +TF+   DAV+  +PLGVLK +   ++F P LP+WK +A+  
Sbjct: 423 RYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQR 482
Query: 319 LGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---CSYFLNLHKATGHCVLVYMPAGQ 374
           +G G  NK+++ FD+VFW P+V   G V  T+        F NL+KA    +L+ + AG+
Sbjct: 483 MGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLALVAGE 539
Query: 375 LARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSH 432
            A  +E +SD+         LK I   ++   P + +VS W  D  + GSYSY   G S 
Sbjct: 540 AAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSG 599
Query: 433 DLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 471
           + Y+ +  P+               LFFAGE T  +YP +VHGA  +GL  A
Sbjct: 600 NDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 651

>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine Length = 852

Iteration: 1
 Score =  163 bits (413), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 155/532 (29%), Positives = 232/532 (43%), Gaps = 113/532 (21%)
Query: 47  LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGL---- 102
           L      V LLE+RDRVGGRV T     +  DLGA  + G+   NP+A V  ++ +    
Sbjct: 297 LQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAK 355
Query: 103 -----PLYRTSGD--------------NSVL-----YDHDLESRVLKTVVVSLIQANLCY 138
                PLY  +G               N +L       H L+  VL    VSL QA    
Sbjct: 356 IKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQA--LE 413
Query: 139 ALFDMDGNQVPQELV------TKVGEAFESILKE----TDKVREEHDE-----DMSIQRA 183
            +  +    V  E +       K  E  + +L +     +K++E H +     ++   R 
Sbjct: 414 VVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRD 473
Query: 184 ISIVF---------------------------DRRPELR--------LEGLAHKVLQWYL 208
           I+  F                           ++  EL         L     ++L W+ 
Sbjct: 474 ITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHF 533
Query: 209 CRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKI 266
             +E   A    T+SLK WD+++     G H  +  GY  V   LA+GLDI+L   V ++
Sbjct: 534 ANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQV 593
Query: 267 TRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDD 318
                G +V    T    +TF+   DAV+  +PLGVLK +   ++F P LP+WK +A+  
Sbjct: 594 RYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQR 653
Query: 319 LGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYGCS---YFLNLHKATGHCVLVYMPAGQ 374
           +G G  NK+++ FD+VFW P+V   G V  T+        F NL+KA    +L+ + AG+
Sbjct: 654 MGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLALVAGE 710
Query: 375 LARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSH 432
            A  +E +SD+         LK I   ++   P + +VS W  D  + GSYSY   G S 
Sbjct: 711 AAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSG 770
Query: 433 DLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 471
           + Y+ +  P+               LFFAGE T  +YP +VHGA  +GL  A
Sbjct: 771 NDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 822

>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of Human Histone Lysine Demethylase Lsd1 Length = 734

Iteration: 1
 Score =  162 bits (411), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 155/536 (28%), Positives = 232/536 (43%), Gaps = 117/536 (21%)
Query: 47  LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGL---- 102
           L      V LLE+RDRVGGRV T     +  DLGA  + G+   NP+A V  ++ +    
Sbjct: 175 LQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAK 233
Query: 103 -----PLYRTSGD------------------NSVL-----YDHDLESRVLKTVVVSLIQA 134
                PLY  +G                   N +L       H L+  VL    VSL QA
Sbjct: 234 IKQKCPLYEANGQADTVKVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQA 293
Query: 135 NLCYALFDMDGNQVPQELV------TKVGEAFESILKE----TDKVREEHDE-----DMS 179
                +  +    V  E +       K  E  + +L +     +K++E H +     ++ 
Sbjct: 294 --LEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVK 351
Query: 180 IQRAISIVF---------------------------DRRPELR--------LEGLAHKVL 204
             R I+  F                           ++  EL         L     ++L
Sbjct: 352 PPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQIL 411
Query: 205 QWYLCRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRLGHR 262
            W+   +E   A    T+SLK WD+++     G H  +  GY  V   LA+GLDI+L   
Sbjct: 412 DWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTA 471
Query: 263 VTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEA 314
           V ++     G +V    T    +TF+   DAV+  +PLGVLK +   ++F P LP+WK +
Sbjct: 472 VRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTS 531
Query: 315 AIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---CSYFLNLHKATGHCVLVYM 370
           A+  +G G  NK+++ FD+VFW P+V   G V  T+        F NL+KA    +L+ +
Sbjct: 532 AVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLAL 588
Query: 371 PAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTV 428
            AG+ A  +E +SD+         LK I   ++   P + +VS W  D  + GSYSY   
Sbjct: 589 VAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAA 648
Query: 429 GKSHDLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 471
           G S + Y+ +  P+               LFFAGE T  +YP +VHGA  +GL  A
Sbjct: 649 GSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 704

>pdb|4FWE|A Chain A, Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup Of C2221 At 2.13a Length = 796

Iteration: 1
 Score =  159 bits (403), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 129/445 (28%), Positives = 210/445 (47%), Gaps = 49/445 (11%)
Query: 47  LHDASFKVVLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLY 105
           LH+   KV +LE++DR+GGRV  D SF G  V  GA  ++G C  NP+A +  +LG+ + 
Sbjct: 375 LHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNG-CINNPVALMCEQLGISM- 432
Query: 106 RTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGE-AFESIL 164
                      H    R        LIQ          +G ++    + K  +  F ++L
Sbjct: 433 -----------HKFGERC------DLIQ----------EGGRITDPTIDKRMDFHFNALL 465
Query: 165 KETDKVREEHDE--DMSIQRAISIV---FDRRPELRLEGLAHKVLQWYLCRMEGWFAADA 219
               + R++  +  D+ +   I  +   F +   ++   L  +VLQ++L  +E    ++ 
Sbjct: 466 DVVSEWRKDKTQLQDVPLGEKIEEIYKAFIKESGIQFSELEGQVLQFHLSNLEYACGSNL 525
Query: 220 ETISLKSWDKEELLP---GGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVT 276
             +S +SWD  E      G H L+  GY  +I  LA+GLDI+L   V  I      V+VT
Sbjct: 526 HQVSARSWDHNEFFAQFAGDHTLLTPGYSVIIEKLAEGLDIQLKSPVQCIDYSGDEVQVT 585
Query: 277 VEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW 336
              G  + A  V+V VPL +L+   I+F P L + K  AI+ LG GI  KI + F   FW
Sbjct: 586 TTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFW 645
Query: 337 PN----VEFLGVV--SDTSYGC-SYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAAN 389
            +     +F G V  S +  G  + F ++     H VL+ + AG+    +  + D+    
Sbjct: 646 DSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQ 705
Query: 390 FAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVD-NLF 446
                L+++  +     P +Y V+ W TD     +YS+   G S + Y+ +   +   +F
Sbjct: 706 QCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVF 765
Query: 447 FAGEATSMSYPGSVHGAFSTGLMAA 471
           FAGEAT+  +P +V GA+ +G+  A
Sbjct: 766 FAGEATNRHFPQTVTGAYLSGVREA 790

>pdb|4GU1|A Chain A, Crystal Structure Of Lsd2 Length = 784

Iteration: 1
 Score =  159 bits (403), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 129/445 (28%), Positives = 210/445 (47%), Gaps = 49/445 (11%)
Query: 47  LHDASFKVVLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLY 105
           LH+   KV +LE++DR+GGRV  D SF G  V  GA  ++G C  NP+A +  +LG+ + 
Sbjct: 363 LHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNG-CINNPVALMCEQLGISM- 420
Query: 106 RTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGE-AFESIL 164
                      H    R        LIQ          +G ++    + K  +  F ++L
Sbjct: 421 -----------HKFGERC------DLIQ----------EGGRITDPTIDKRMDFHFNALL 453
Query: 165 KETDKVREEHDE--DMSIQRAISIV---FDRRPELRLEGLAHKVLQWYLCRMEGWFAADA 219
               + R++  +  D+ +   I  +   F +   ++   L  +VLQ++L  +E    ++ 
Sbjct: 454 DVVSEWRKDKTQLQDVPLGEKIEEIYKAFIKESGIQFSELEGQVLQFHLSNLEYACGSNL 513
Query: 220 ETISLKSWDKEELLP---GGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVT 276
             +S +SWD  E      G H L+  GY  +I  LA+GLDI+L   V  I      V+VT
Sbjct: 514 HQVSARSWDHNEFFAQFAGDHTLLTPGYSVIIEKLAEGLDIQLKSPVQCIDYSGDEVQVT 573
Query: 277 VEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW 336
              G  + A  V+V VPL +L+   I+F P L + K  AI+ LG GI  KI + F   FW
Sbjct: 574 TTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFW 633
Query: 337 PN----VEFLGVV--SDTSYGC-SYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAAN 389
            +     +F G V  S +  G  + F ++     H VL+ + AG+    +  + D+    
Sbjct: 634 DSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQ 693
Query: 390 FAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVD-NLF 446
                L+++  +     P +Y V+ W TD     +YS+   G S + Y+ +   +   +F
Sbjct: 694 QCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVF 753
Query: 447 FAGEATSMSYPGSVHGAFSTGLMAA 471
           FAGEAT+  +P +V GA+ +G+  A
Sbjct: 754 FAGEATNRHFPQTVTGAYLSGVREA 778

>pdb|4GUR|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group P21 Length = 776

Iteration: 1
 Score =  159 bits (402), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 129/445 (28%), Positives = 210/445 (47%), Gaps = 49/445 (11%)
Query: 47  LHDASFKVVLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLY 105
           LH+   KV +LE++DR+GGRV  D SF G  V  GA  ++G C  NP+A +  +LG+ + 
Sbjct: 355 LHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNG-CINNPVALMCEQLGISM- 412
Query: 106 RTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTK-VGEAFESIL 164
                      H    R        LIQ          +G ++    + K +   F ++L
Sbjct: 413 -----------HKFGERC------DLIQ----------EGGRITDPTIDKRMDFHFNALL 445
Query: 165 KETDKVREEHDE--DMSIQRAISIV---FDRRPELRLEGLAHKVLQWYLCRMEGWFAADA 219
               + R++  +  D+ +   I  +   F +   ++   L  +VLQ++L  +E    ++ 
Sbjct: 446 DVVSEWRKDKTQLQDVPLGEKIEEIYKAFIKESGIQFSELEGQVLQFHLSNLEYACGSNL 505
Query: 220 ETISLKSWDKEELLP---GGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVT 276
             +S +SWD  E      G H L+  GY  +I  LA+GLDI+L   V  I      V+VT
Sbjct: 506 HQVSARSWDHNEFFAQFAGDHTLLTPGYSVIIEKLAEGLDIQLKSPVQCIDYSGDEVQVT 565
Query: 277 VEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW 336
              G  + A  V+V VPL +L+   I+F P L + K  AI+ LG GI  KI + F   FW
Sbjct: 566 TTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFW 625
Query: 337 PN----VEFLGVV--SDTSYGC-SYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAAN 389
            +     +F G V  S +  G  + F ++     H VL+ + AG+    +  + D+    
Sbjct: 626 DSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQ 685
Query: 390 FAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVD-NLF 446
                L+++  +     P +Y V+ W TD     +YS+   G S + Y+ +   +   +F
Sbjct: 686 QCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVF 745
Query: 447 FAGEATSMSYPGSVHGAFSTGLMAA 471
           FAGEAT+  +P +V GA+ +G+  A
Sbjct: 746 FAGEATNRHFPQTVTGAYLSGVREA 770

>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal Structure Of Polyamine Oxidase Length = 472

Iteration: 1
 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 137/472 (29%), Positives = 209/472 (44%), Gaps = 80/472 (16%)
Query: 54  VVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVC--QENPLAPVI-SRLGLPLYRTSGD 110
           +++LE+ D +GGR+H     G  V+LGA+W+ GV   + NP+ P++ S L L  +R+  D
Sbjct: 31  LLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKLRNFRSDFD 90
Query: 111 NSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQEL---VTKVGEAFESILKET 167
                   L   V K              ++D D  Q   EL   V ++GE   + L  +
Sbjct: 91  Y-------LAQNVYKE----------DGGVYDEDYVQKRIELADSVEEMGEKLSATLHAS 133
Query: 168 DKVREEHDEDMSIQRAISIVFDRRPELRLEGLA---HKVLQWYLCRMEGWFAADAETISL 224
            +      +DMSI     +   R  E +  G A     V+ +Y    E  FA      SL
Sbjct: 134 GR------DDMSI-----LAMQRLNEHQPNGPATPVDMVVDYYKFDYE--FAEPPRVTSL 180
Query: 225 KSWDKEELLP-------GGHGLMV---RGYLPVINTLA-----------KGLDIRLGHRV 263
           ++      +P       G     V   RGY  V+  LA           K +D RL  ++
Sbjct: 181 QN-----TVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRL--QL 233
Query: 264 TKITRHYI----GVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDL 319
            K+ R       GV V  E    + AD V+V+  LGVL++  I+F+P+LP WK  AI   
Sbjct: 234 NKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQF 293
Query: 320 GVGIENKIIMHFDKVFWPNVE----FLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQL 375
            + +  KI + F + FWP  +    FL   S   Y   +     +     VL+     + 
Sbjct: 294 DMAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEE 353
Query: 376 ARDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHD 433
           +R IE+ SDE         L+K+ P  D       LV  W +D    G++S   VG +  
Sbjct: 354 SRRIEQQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRY 413
Query: 434 LYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAE---DCRMRVLERY 482
            Y++LR PV  ++F GE TS  Y G VHGA+ +G+ +AE   +C  + + +Y
Sbjct: 414 EYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQKKMCKY 465

>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine Oxidase From Zea Mays Length = 478

Iteration: 1
 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 136/472 (28%), Positives = 208/472 (44%), Gaps = 80/472 (16%)
Query: 54  VVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVC--QENPLAPVI-SRLGLPLYRTSGD 110
           +++LE+ D +GGR+H     G  V+LGA+W+ GV   + NP+ P++ S L L  +R+  D
Sbjct: 31  LLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKLRNFRSDFD 90
Query: 111 NSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQEL---VTKVGEAFESILKET 167
                   L   V K              ++D D  Q   EL   V ++GE   + L  +
Sbjct: 91  Y-------LAQNVYKE----------DGGVYDEDYVQKRIELADSVEEMGEKLSATLHAS 133
Query: 168 DKVREEHDEDMSIQRAISIVFDRRPELRLEGLA---HKVLQWYLCRMEGWFAADAETISL 224
            +      +DMSI     +   R  E +  G A     V+ +Y    E  FA      SL
Sbjct: 134 GR------DDMSI-----LAMQRLNEHQPNGPATPVDMVVDYYKFDYE--FAEPPRVTSL 180
Query: 225 KSWDKEELLP-------GGHGLMV---RGYLPVINTLA-----------KGLDIRLGHRV 263
           ++      +P       G     V   RGY  V+  LA           K +D RL  ++
Sbjct: 181 QN-----TVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRL--QL 233
Query: 264 TKITRHYI----GVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDL 319
            K+ R       GV V  E    + AD V+V+  LGVL++  I+F+P+LP WK  AI   
Sbjct: 234 NKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQF 293
Query: 320 GVGIENKIIMHFDKVFWPNVE----FLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQL 375
            + +   I + F + FWP  +    FL   S   Y   +     +     VL+     + 
Sbjct: 294 DMAVYTMIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEE 353
Query: 376 ARDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHD 433
           +R IE+ SDE         L+K+ P  D       LV  W +D    G++S   VG +  
Sbjct: 354 SRRIEQQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRY 413
Query: 434 LYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAE---DCRMRVLERY 482
            Y++LR PV  ++F GE TS  Y G VHGA+ +G+ +AE   +C  + + +Y
Sbjct: 414 EYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQKKMCKY 465

>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant Length = 516

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 127/502 (25%), Positives = 191/502 (38%), Gaps = 122/502 (24%)
Query: 55  VLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTS---GD 110
           ++LE+RDRVGGR+ T   + G   D+GASW H     NPL    ++L L   RT     D
Sbjct: 36  LVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLT-NPLFLEEAQLSLNDGRTRFVFDD 94
Query: 111 NSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKV 170
           ++ +Y  +   RV                  D D     +EL+ ++ +   S   E +  
Sbjct: 95  DNFIYIDEERGRV------------------DHD-----KELLLEIVDNEMSKFAELEFH 131
Query: 171 REEHDEDMSI-QRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWD 228
           +     D S  Q  +  +  RR  L  + + +      LCR +E W   D + +S K   
Sbjct: 132 QHLGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLP---QLCRYLELWHGLDWKLLSAKD-- 186
Query: 229 KEELLPGGHGLMVRGYLPVINTLAKGLD---IRLGHRVTKITRH-YIGVKVTVEGGKTFV 284
                  G       Y  V+  +A+      ++L   V  ITR     V V  E G  + 
Sbjct: 187 -TYFGHQGRAAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYN 245
Query: 285 ADAVVVAVPLGVLKART---------IKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVF 335
           AD V++ VP  VL             I+F+P L    + A D +  G   K+I  F++  
Sbjct: 246 ADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECC 305
Query: 336 WPNV------------EFLGVVSD-------------------TSYGC----SYFLNLHK 360
           W N             EF+ +V +                   TS  C     +F+NL K
Sbjct: 306 WSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSK 365
Query: 361 ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQ--LKKILP--------DASSPIQ--- 407
           +TG    + +    L   IE + ++    F+F Q  L KI+         D   PI+   
Sbjct: 366 STGVASFMMLMQAPLTNHIESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIA 425
Query: 408 ---------YLVSHWGTDANSLGSYSYD---------TVGKSHDLYERLRIPVDNLFFAG 449
                     +VS+W  D  S G+YS            V  S+    R+R       FAG
Sbjct: 426 NANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSRIR-------FAG 478
Query: 450 EATSMSYPGSVHGAFSTGLMAA 471
           E T M   G  +GA+ +G   A
Sbjct: 479 EHTIMDGAGCAYGAWESGRREA 500

>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate Length = 516

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 127/502 (25%), Positives = 191/502 (38%), Gaps = 122/502 (24%)
Query: 55  VLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTS---GD 110
           ++LE+RDRVGGR+ T   + G   D+GASW H     NPL    ++L L   RT     D
Sbjct: 36  LVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLT-NPLFLEEAQLSLNDGRTRFVFDD 94
Query: 111 NSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKV 170
           ++ +Y  +   RV                  D D     +EL+ ++ +   S   E +  
Sbjct: 95  DNFIYIDEERGRV------------------DHD-----KELLLEIVDNEMSKFAELEFH 131
Query: 171 REEHDEDMSI-QRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWD 228
           +     D S  Q  +  +  RR  L  + + +      LCR +E W   D + +S K   
Sbjct: 132 QHLGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLP---QLCRYLELWHGLDWKLLSAKD-- 186
Query: 229 KEELLPGGHGLMVRGYLPVINTLAKGLD---IRLGHRVTKITRH-YIGVKVTVEGGKTFV 284
                  G       Y  V+  +A+      ++L   V  ITR     V V  E G  + 
Sbjct: 187 -TYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYN 245
Query: 285 ADAVVVAVPLGVLKART---------IKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVF 335
           AD V++ VP  VL             I+F+P L    + A D +  G   K+I  F++  
Sbjct: 246 ADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECC 305
Query: 336 WPNV------------EFLGVVSD-------------------TSYGC----SYFLNLHK 360
           W N             EF+ +V +                   TS  C     +F+NL K
Sbjct: 306 WSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSK 365
Query: 361 ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQ--LKKILP--------DASSPIQ--- 407
           +TG    + +    L   IE + ++    F+F Q  L KI+         D   PI+   
Sbjct: 366 STGVASFMMLMQAPLTNHIESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIA 425
Query: 408 ---------YLVSHWGTDANSLGSYSYD---------TVGKSHDLYERLRIPVDNLFFAG 449
                     +VS+W  D  S G+YS            V  S+    R+R       FAG
Sbjct: 426 NANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSRIR-------FAG 478
Query: 450 EATSMSYPGSVHGAFSTGLMAA 471
           E T M   G  +GA+ +G   A
Sbjct: 479 EHTIMDGAGCAYGAWESGRREA 500

>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast Length = 513

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 127/502 (25%), Positives = 191/502 (38%), Gaps = 122/502 (24%)
Query: 55  VLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTS---GD 110
           ++LE+RDRVGGR+ T   + G   D+GASW H     NPL    ++L L   RT     D
Sbjct: 36  LVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLT-NPLFLEEAQLSLNDGRTRFVFDD 94
Query: 111 NSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKV 170
           ++ +Y  +   RV                  D D     +EL+ ++ +   S   E +  
Sbjct: 95  DNFIYIDEERGRV------------------DHD-----KELLLEIVDNEMSKFAELEFH 131
Query: 171 REEHDEDMSI-QRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWD 228
           +     D S  Q  +  +  RR  L  + + +      LCR +E W   D + +S K   
Sbjct: 132 QHLGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLP---QLCRYLELWHGLDWKLLSAKD-- 186
Query: 229 KEELLPGGHGLMVRGYLPVINTLAKGLD---IRLGHRVTKITRH-YIGVKVTVEGGKTFV 284
                  G       Y  V+  +A+      ++L   V  ITR     V V  E G  + 
Sbjct: 187 -TYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYN 245
Query: 285 ADAVVVAVPLGVLKART---------IKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVF 335
           AD V++ VP  VL             I+F+P L    + A D +  G   K+I  F++  
Sbjct: 246 ADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECC 305
Query: 336 WPNV------------EFLGVVSD-------------------TSYGC----SYFLNLHK 360
           W N             EF+ +V +                   TS  C     +F+NL K
Sbjct: 306 WSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSK 365
Query: 361 ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQ--LKKILP--------DASSPIQ--- 407
           +TG    + +    L   IE + ++    F+F Q  L KI+         D   PI+   
Sbjct: 366 STGVASFMMLMQAPLTNHIESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIA 425
Query: 408 ---------YLVSHWGTDANSLGSYSYD---------TVGKSHDLYERLRIPVDNLFFAG 449
                     +VS+W  D  S G+YS            V  S+    R+R       FAG
Sbjct: 426 NANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSRIR-------FAG 478
Query: 450 EATSMSYPGSVHGAFSTGLMAA 471
           E T M   G  +GA+ +G   A
Sbjct: 479 EHTIMDGAGCAYGAWESGRREA 500

>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant Length = 516

Iteration: 1
 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 127/502 (25%), Positives = 191/502 (38%), Gaps = 122/502 (24%)
Query: 55  VLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTS---GD 110
           ++LE+RDRVGGR+ T   + G   D+GASW H     NPL    ++L L   RT     D
Sbjct: 36  LVLEARDRVGGRLQTVTGYQGRKYDIGASW-HQDTLTNPLFLEEAQLSLNDGRTRFVFDD 94
Query: 111 NSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKV 170
           ++ +Y  +   RV                  D D     +EL+ ++ +   S   E +  
Sbjct: 95  DNFIYIDEERGRV------------------DHD-----KELLLEIVDNEMSKFAELEFH 131
Query: 171 REEHDEDMSI-QRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWD 228
           +     D S  Q  +  +  RR  L  + + +      LCR +E W   D + +S K   
Sbjct: 132 QHLGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLP---QLCRYLELWHGLDWKLLSAKD-- 186
Query: 229 KEELLPGGHGLMVRGYLPVINTLAKGLD---IRLGHRVTKITRH-YIGVKVTVEGGKTFV 284
                  G       Y  V+  +A+      ++L   V  ITR     V V  E G  + 
Sbjct: 187 -TYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYN 245
Query: 285 ADAVVVAVPLGVLKART---------IKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVF 335
           AD V++ VP  VL             I+F+P L    + A D +  G   K+I  F++  
Sbjct: 246 ADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECC 305
Query: 336 WPNV------------EFLGVVSD-------------------TSYGC----SYFLNLHK 360
           W N             EF+ +V +                   TS  C     +F+NL K
Sbjct: 306 WSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSK 365
Query: 361 ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQ--LKKILP--------DASSPIQ--- 407
           +TG    + +    L   IE + ++    F+F Q  L KI+         D   PI+   
Sbjct: 366 STGVASFMMLMQAPLTNHIESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIA 425
Query: 408 ---------YLVSHWGTDANSLGSYSYD---------TVGKSHDLYERLRIPVDNLFFAG 449
                     +VS+W  D  S G+YS            V  S+    R+R       FAG
Sbjct: 426 NANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSRIR-------FAG 478
Query: 450 EATSMSYPGSVHGAFSTGLMAA 471
           E T M   G  +GA+ +G   A
Sbjct: 479 EHTIMDGAGCAYGAWESGRREA 500

>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast Length = 516

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 123/502 (24%), Positives = 188/502 (37%), Gaps = 120/502 (23%)
Query: 54  VVLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTS---G 109
            ++LE+RDRVGGR+ T   + G   D+GASW H     NPL    ++L L   RT     
Sbjct: 35  CLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLT-NPLFLEEAQLSLNDGRTRFVFD 93
Query: 110 DNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDK 169
           D++ +Y  +   RV                  D D     +EL+ ++ +   S   E + 
Sbjct: 94  DDNFIYIDEERGRV------------------DHD-----KELLLEIVDNEXSKFAELEF 130
Query: 170 VREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWD 228
            +     D S  + +     +R +         + Q  LCR +E W   D + +S K   
Sbjct: 131 HQHLGVSDCSFFQLVXKYLLQRRQFLTNDQIRYLPQ--LCRYLELWHGLDWKLLSAKD-- 186
Query: 229 KEELLPGGHGLMVRGYLPVINTLAKGLD---IRLGHRVTKITRH-YIGVKVTVEGGKTFV 284
                  G       Y  V+  +A+      ++L   V  ITR     V V  E G  + 
Sbjct: 187 -TYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYN 245
Query: 285 ADAVVVAVPLGVLKART---------IKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVF 335
           AD V++ VP  VL             I+F+P L    + A D +  G   K+I  F++  
Sbjct: 246 ADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECC 305
Query: 336 WPNV------------EFLGVVSD-------------------TSYGC----SYFLNLHK 360
           W N             EF+ +V +                   TS  C     +F+NL K
Sbjct: 306 WSNESSKIVTLANSTNEFVEIVRNAENLDELDSXLEREDSQKHTSVTCWSQPLFFVNLSK 365
Query: 361 ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQ--LKKI------------------LP 400
           +TG      +    L   IE + ++    F+F Q  L KI                  + 
Sbjct: 366 STGVASFXXLXQAPLTNHIESIREDKERLFSFFQPVLNKIXKCLDSEDVIDGXRPIENIA 425
Query: 401 DASSPI--QYLVSHWGTDANSLGSYSY---------DTVGKSHDLYERLRIPVDNLFFAG 449
           +A+ P+    +VS+W  D  S G+YS            V  S+    R+R       FAG
Sbjct: 426 NANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDXVVAXSNGQDSRIR-------FAG 478
Query: 450 EATSMSYPGSVHGAFSTGLMAA 471
           E T     G  +GA+ +G   A
Sbjct: 479 EHTIXDGAGCAYGAWESGRREA 500

>pdb|2C72|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine Oxidase B: Structures And Catalytic Properties Of Tyr435 Mutant Proteins Length = 520

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 107/447 (23%), Positives = 187/447 (41%), Gaps = 40/447 (8%)
Query: 47  LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
           LHD+   VV+LE+RDRVGGR +T  +     VDLG S++ G  Q N +  +   LGL  Y
Sbjct: 23  LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYV-GPTQ-NRILRLAKELGLETY 80
Query: 106 RTSGDNSVLYDHDLESRVLK-------TVVVSLIQANLCYALFDMDGNQVPQELVTKVGE 158
           + +    +++    +S   +         +  L   N    + DM G ++P +   K   
Sbjct: 81  KVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDM-GREIPSDAPWKAPL 139
Query: 159 AFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQWYLCRMEGW 214
           A E       ++ ++     S ++  ++  +    L +    H+V      WY+ +  G 
Sbjct: 140 AEEWDNMTMKELLDKLCWTESAKQLATLFVN----LCVTAETHEVSALWFLWYVKQCGG- 194
Query: 215 FAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVK 274
                  IS  +  +E    GG G +    + ++     G  ++L   V  I +    V 
Sbjct: 195 ---TTRIISTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIYIDQTRENVL 246
Query: 275 VTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFD 332
           V     + + A  V+ A+P  LG+     I F P LP  +   I  + +G   K I+++ 
Sbjct: 247 VETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYK 302
Query: 333 KVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIEKMSDEAAAN 389
           + FW   ++ G  ++       +Y L+  K  G +  ++       AR + +++ E    
Sbjct: 303 EPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLK 362
Query: 390 FAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVDNLF 446
                  K+L   +A  P+ Y   +W  +  S G Y+ Y   G        LR PVD ++
Sbjct: 363 KLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIY 422
Query: 447 FAGEATSMSYPGSVHGAFSTGLMAAED 473
           FAG  T+  + G + GA   G  AA +
Sbjct: 423 FAGTETATHWSGHMEGAVEAGERAARE 449

>pdb|1GOS|A Chain A, Human Monoamine Oxidase B Length = 520

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 107/447 (23%), Positives = 187/447 (41%), Gaps = 40/447 (8%)
Query: 47  LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
           LHD+   VV+LE+RDRVGGR +T  +     VDLG S++ G  Q N +  +   LGL  Y
Sbjct: 23  LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYV-GPTQ-NRILRLAKELGLETY 80
Query: 106 RTSGDNSVLYDHDLESRVLK-------TVVVSLIQANLCYALFDMDGNQVPQELVTKVGE 158
           + +    +++    +S   +         +  L   N    + DM G ++P +   K   
Sbjct: 81  KVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDM-GREIPSDAPWKAPL 139
Query: 159 AFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQWYLCRMEGW 214
           A E       ++ ++     S ++  ++  +    L +    H+V      WY+ +  G 
Sbjct: 140 AEEWDNMTMKELLDKLCWTESAKQLATLFVN----LCVTAETHEVSALWFLWYVKQCGG- 194
Query: 215 FAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVK 274
                  IS  +  +E    GG G +    + ++     G  ++L   V  I +    V 
Sbjct: 195 ---TTRIISTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIYIDQTRENVL 246
Query: 275 VTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFD 332
           V     + + A  V+ A+P  LG+     I F P LP  +   I  + +G   K I+++ 
Sbjct: 247 VETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYK 302
Query: 333 KVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIEKMSDEAAAN 389
           + FW   ++ G  ++       +Y L+  K  G +  ++       AR + +++ E    
Sbjct: 303 EPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLK 362
Query: 390 FAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVDNLF 446
                  K+L   +A  P+ Y   +W  +  S G Y+ Y   G        LR PVD ++
Sbjct: 363 KLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIY 422
Query: 447 FAGEATSMSYPGSVHGAFSTGLMAAED 473
           FAG  T+  + G + GA   G  AA +
Sbjct: 423 FAGTETATHWSGYMEGAVEAGERAARE 449

>pdb|2XFU|A Chain A, Human Monoamine Oxidase B With Tranylcypromine Length = 519

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 105/447 (23%), Positives = 186/447 (41%), Gaps = 40/447 (8%)
Query: 47  LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
           LHD+   VV+LE+RDRVGGR +T  +     VDLG S++     +N +  +   LGL  Y
Sbjct: 22  LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT--QNRILRLAKELGLETY 79
Query: 106 RTSGDNSVLYDHDLESRVLK-------TVVVSLIQANLCYALFDMDGNQVPQELVTKVGE 158
           + +    +++    +S   +         +  L   N    + DM G ++P +   K   
Sbjct: 80  KVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDM-GREIPSDAPWKAPL 138
Query: 159 AFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQWYLCRMEGW 214
           A E       ++ ++     S ++  ++  +    L +    H+V      WY+ +  G 
Sbjct: 139 AEEWDNMTMKELLDKLCWTESAKQLATLFVN----LCVTAETHEVSALWFLWYVKQCGG- 193
Query: 215 FAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVK 274
                  IS  +  +E    GG G +    + ++     G  ++L   V  I +    V 
Sbjct: 194 ---TTRIISTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIYIDQTRENVL 245
Query: 275 VTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFD 332
           V     + + A  V+ A+P  LG+     I F P LP  +   I  + +G   K I+++ 
Sbjct: 246 VETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYK 301
Query: 333 KVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIEKMSDEAAAN 389
           + FW   ++ G  ++       +Y L+  K  G +  ++       AR + +++ E    
Sbjct: 302 EPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLK 361
Query: 390 FAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVDNLF 446
                  K+L   +A  P+ Y   +W  +  S G Y+ Y   G        LR PVD ++
Sbjct: 362 KLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIY 421
Query: 447 FAGEATSMSYPGSVHGAFSTGLMAAED 473
           FAG  T+  + G + GA   G  AA +
Sbjct: 422 FAGTETATHWSGYMEGAVEAGERAARE 448

>pdb|2C73|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine Oxidase B: Structures And Catalytic Properties Of Tyr435 Mutant Proteins Length = 520

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 105/447 (23%), Positives = 186/447 (41%), Gaps = 40/447 (8%)
Query: 47  LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
           LHD+   VV+LE+RDRVGGR +T  +     VDLG S++     +N +  +   LGL  Y
Sbjct: 23  LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT--QNRILRLAKELGLETY 80
Query: 106 RTSGDNSVLYDHDLESRVLK-------TVVVSLIQANLCYALFDMDGNQVPQELVTKVGE 158
           + +    +++    +S   +         +  L   N    + DM G ++P +   K   
Sbjct: 81  KVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDM-GREIPSDAPWKAPL 139
Query: 159 AFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQWYLCRMEGW 214
           A E       ++ ++     S ++  ++  +    L +    H+V      WY+ +  G 
Sbjct: 140 AEEWDNMTMKELLDKLCWTESAKQLATLFVN----LCVTAETHEVSALWFLWYVKQCGG- 194
Query: 215 FAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVK 274
                  IS  +  +E    GG G +    + ++     G  ++L   V  I +    V 
Sbjct: 195 ---TTRIISTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIYIDQTRENVL 246
Query: 275 VTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFD 332
           V     + + A  V+ A+P  LG+     I F P LP  +   I  + +G   K I+++ 
Sbjct: 247 VETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYK 302
Query: 333 KVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIEKMSDEAAAN 389
           + FW   ++ G  ++       +Y L+  K  G +  ++       AR + +++ E    
Sbjct: 303 EPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLK 362
Query: 390 FAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVDNLF 446
                  K+L   +A  P+ Y   +W  +  S G Y+ Y   G        LR PVD ++
Sbjct: 363 KLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIY 422
Query: 447 FAGEATSMSYPGSVHGAFSTGLMAAED 473
           FAG  T+  + G + GA   G  AA +
Sbjct: 423 FAGTETATHWSGFMEGAVEAGERAARE 449

>pdb|2C76|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine Oxidase B: Structures And Catalytic Properties Of Tyr435 Mutant Proteins Length = 520

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 105/447 (23%), Positives = 186/447 (41%), Gaps = 40/447 (8%)
Query: 47  LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
           LHD+   VV+LE+RDRVGGR +T  +     VDLG S++     +N +  +   LGL  Y
Sbjct: 23  LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT--QNRILRLAKELGLETY 80
Query: 106 RTSGDNSVLYDHDLESRVLK-------TVVVSLIQANLCYALFDMDGNQVPQELVTKVGE 158
           + +    +++    +S   +         +  L   N    + DM G ++P +   K   
Sbjct: 81  KVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDM-GREIPSDAPWKAPL 139
Query: 159 AFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQWYLCRMEGW 214
           A E       ++ ++     S ++  ++  +    L +    H+V      WY+ +  G 
Sbjct: 140 AEEWDNMTMKELLDKLCWTESAKQLATLFVN----LCVTAETHEVSALWFLWYVKQCGG- 194
Query: 215 FAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVK 274
                  IS  +  +E    GG G +    + ++     G  ++L   V  I +    V 
Sbjct: 195 ---TTRIISTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIYIDQTRENVL 246
Query: 275 VTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFD 332
           V     + + A  V+ A+P  LG+     I F P LP  +   I  + +G   K I+++ 
Sbjct: 247 VETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYK 302
Query: 333 KVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIEKMSDEAAAN 389
           + FW   ++ G  ++       +Y L+  K  G +  ++       AR + +++ E    
Sbjct: 303 EPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLK 362
Query: 390 FAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVDNLF 446
                  K+L   +A  P+ Y   +W  +  S G Y+ Y   G        LR PVD ++
Sbjct: 363 KLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIY 422
Query: 447 FAGEATSMSYPGSVHGAFSTGLMAAED 473
           FAG  T+  + G + GA   G  AA +
Sbjct: 423 FAGTETATHWSGWMEGAVEAGERAARE 449

>pdb|2C75|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine Oxidase B: Structures And Catalytic Properties Of Tyr435 Mutant Proteins Length = 520

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 105/447 (23%), Positives = 186/447 (41%), Gaps = 40/447 (8%)
Query: 47  LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
           LHD+   VV+LE+RDRVGGR +T  +     VDLG S++     +N +  +   LGL  Y
Sbjct: 23  LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT--QNRILRLAKELGLETY 80
Query: 106 RTSGDNSVLYDHDLESRVLK-------TVVVSLIQANLCYALFDMDGNQVPQELVTKVGE 158
           + +    +++    +S   +         +  L   N    + DM G ++P +   K   
Sbjct: 81  KVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDM-GREIPSDAPWKAPL 139
Query: 159 AFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQWYLCRMEGW 214
           A E       ++ ++     S ++  ++  +    L +    H+V      WY+ +  G 
Sbjct: 140 AEEWDNMTMKELLDKLCWTESAKQLATLFVN----LCVTAETHEVSALWFLWYVKQCGG- 194
Query: 215 FAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVK 274
                  IS  +  +E    GG G +    + ++     G  ++L   V  I +    V 
Sbjct: 195 ---TTRIISTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIYIDQTRENVL 246
Query: 275 VTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFD 332
           V     + + A  V+ A+P  LG+     I F P LP  +   I  + +G   K I+++ 
Sbjct: 247 VETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYK 302
Query: 333 KVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIEKMSDEAAAN 389
           + FW   ++ G  ++       +Y L+  K  G +  ++       AR + +++ E    
Sbjct: 303 EPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLK 362
Query: 390 FAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVDNLF 446
                  K+L   +A  P+ Y   +W  +  S G Y+ Y   G        LR PVD ++
Sbjct: 363 KLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIY 422
Query: 447 FAGEATSMSYPGSVHGAFSTGLMAAED 473
           FAG  T+  + G + GA   G  AA +
Sbjct: 423 FAGTETATHWSGLMEGAVEAGERAARE 449

>pdb|2BK4|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With Rasagiline Length = 520

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 106/447 (23%), Positives = 186/447 (41%), Gaps = 40/447 (8%)
Query: 47  LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
           LHD+   VV+LE+RDRVGGR +T  +     VDLG S++ G  Q N +  +   LGL  Y
Sbjct: 23  LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYV-GPTQ-NRILRLAKELGLETY 80
Query: 106 RTSGDNSVLYDHDLESRVLK-------TVVVSLIQANLCYALFDMDGNQVPQELVTKVGE 158
           + +    +++    +S   +         +  L   N    + DM G ++P +   K   
Sbjct: 81  KVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDM-GREIPSDAPWKAPL 139
Query: 159 AFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQWYLCRMEGW 214
           A E       ++ ++     S ++  ++  +    L +    H+V      WY+ +  G 
Sbjct: 140 AEEWDNMTMKELLDKLCWTESAKQLATLFVN----LCVTAETHEVSALWFLWYVKQCGG- 194
Query: 215 FAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVK 274
                   S  +  +E    GG G +    + ++     G  ++L   V  I +    V 
Sbjct: 195 ---TTRIFSTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIYIDQTRENVL 246
Query: 275 VTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFD 332
           V     + + A  V+ A+P  LG+     I F P LP  +   I  + +G   K I+++ 
Sbjct: 247 VETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYK 302
Query: 333 KVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIEKMSDEAAAN 389
           + FW   ++ G  ++       +Y L+  K  G +  ++       AR + +++ E    
Sbjct: 303 EPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLK 362
Query: 390 FAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVDNLF 446
                  K+L   +A  P+ Y   +W  +  S G Y+ Y   G        LR PVD ++
Sbjct: 363 KLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIY 422
Query: 447 FAGEATSMSYPGSVHGAFSTGLMAAED 473
           FAG  T+  + G + GA   G  AA +
Sbjct: 423 FAGTETATHWSGYMEGAVEAGERAARE 449

>pdb|2XFO|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2- Imidazoline Length = 520

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 104/447 (23%), Positives = 185/447 (41%), Gaps = 40/447 (8%)
Query: 47  LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
           LHD+   VV+LE+RDRVGGR +T  +     VDLG S++     +N +  +   LGL  Y
Sbjct: 23  LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT--QNRILRLAKELGLETY 80
Query: 106 RTSGDNSVLYDHDLESRVLK-------TVVVSLIQANLCYALFDMDGNQVPQELVTKVGE 158
           + +    +++    +S   +         +  L   N    + DM G ++P +   K   
Sbjct: 81  KVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDM-GREIPSDAPWKAPL 139
Query: 159 AFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQWYLCRMEGW 214
           A E       ++ ++     S ++  ++  +    L +    H+V      WY+ +  G 
Sbjct: 140 AEEWDNMTMKELLDKLCWTESAKQLATLFVN----LCVTAETHEVSALWFLWYVKQCGG- 194
Query: 215 FAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVK 274
                   S  +  +E    GG G +    + ++     G  ++L   V  I +    V 
Sbjct: 195 ---TTRIASTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIYIDQTRENVL 246
Query: 275 VTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFD 332
           V     + + A  V+ A+P  LG+     I F P LP  +   I  + +G   K I+++ 
Sbjct: 247 VETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYK 302
Query: 333 KVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIEKMSDEAAAN 389
           + FW   ++ G  ++       +Y L+  K  G +  ++       AR + +++ E    
Sbjct: 303 EPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLK 362
Query: 390 FAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVDNLF 446
                  K+L   +A  P+ Y   +W  +  S G Y+ Y   G        LR PVD ++
Sbjct: 363 KLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIY 422
Query: 447 FAGEATSMSYPGSVHGAFSTGLMAAED 473
           FAG  T+  + G + GA   G  AA +
Sbjct: 423 FAGTETATHWSGYMEGAVEAGERAARE 449

>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In Complex With Methylene Blue And Bearing The Double Mutation I199a- Y326a Length = 519

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 103/447 (23%), Positives = 184/447 (41%), Gaps = 40/447 (8%)
Query: 47  LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
           LHD+   VV+LE+RDRVGGR +T  +     VDLG S++     +N +  +   LGL  Y
Sbjct: 22  LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT--QNRILRLAKELGLETY 79
Query: 106 RTSGDNSVLYDHDLESRVLK-------TVVVSLIQANLCYALFDMDGNQVPQELVTKVGE 158
           + +    +++    +S   +         +  L   N    + DM G ++P +   K   
Sbjct: 80  KVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDM-GREIPSDAPWKAPL 138
Query: 159 AFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQWYLCRMEGW 214
           A E       ++ ++     S ++  ++  +    L +    H+V      WY+ +  G 
Sbjct: 139 AEEWDNMTMKELLDKLCWTESAKQLATLFVN----LCVTAETHEVSALWFLWYVKQCGG- 193
Query: 215 FAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVK 274
                   S  +  +E    GG G +    + ++     G  ++L   V  I +    V 
Sbjct: 194 ---TTRIASTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIYIDQTRENVL 245
Query: 275 VTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFD 332
           V     + + A  V+ A+P  LG+     I F P LP  +   I  + +G   K I+++ 
Sbjct: 246 VETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYK 301
Query: 333 KVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIEKMSDEAAAN 389
           + FW   ++ G  ++       +  L+  K  G +  ++       AR + +++ E    
Sbjct: 302 EPFWRKKDYCGTMIIDGEEAPVAATLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLK 361
Query: 390 FAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVDNLF 446
                  K+L   +A  P+ Y   +W  +  S G Y+ Y   G        LR PVD ++
Sbjct: 362 KLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIY 421
Query: 447 FAGEATSMSYPGSVHGAFSTGLMAAED 473
           FAG  T+  + G + GA   G  AA +
Sbjct: 422 FAGTETATHWSGYMEGAVEAGERAARE 448

>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a) With Harmine Length = 513

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 98/450 (21%), Positives = 182/450 (40%), Gaps = 46/450 (10%)
Query: 47  LHDASFKVVLLESRDRVGGRV------HTDYSFGFPVDLGASWLHGVCQENPLAPVISRL 100
           L +    V++LE+RDRVGGR       H DY     VD+G +++     +N +  +   L
Sbjct: 21  LTEYGVSVLVLEARDRVGGRTYTIRNEHVDY-----VDVGGAYVGPT--QNRILRLSKEL 73
Query: 101 GLPLYRTSGDNSVLYDHDLESRVLKTVV------VSLIQANLCYALFDMDGNQVPQELVT 154
           G+  Y+ +    ++     ++   +         ++ +  N  +   D  G ++P +   
Sbjct: 74  GIETYKVNVSERLVQYVKGKTYPFRAAFPPVWNPIAYLDYNNLWRTIDNMGKEIPTDAPW 133
Query: 155 KVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQWYLCR 210
           +   A +   K T K   +        R  + +F     + +    H+V      WY+ +
Sbjct: 134 EAQHA-DKWDKMTMKELIDKICWTKTARRFAYLF---VNINVTSEPHEVSALWFLWYVKQ 189
Query: 211 MEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHY 270
             G         S+ +  +E    GG G +    + ++     G  ++L H VT + +  
Sbjct: 190 CGG----TTRIFSVTNGGQERKFVGGSGQVSERIMDLL-----GDQVKLNHPVTHVDQSS 240
Query: 271 IGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMH 330
             + +     + +    V+ A+P   L A+ I F P LP  +   I  L +G   K +M+
Sbjct: 241 DNIIIETLNHEHYECKYVINAIP-PTLTAK-IHFRPELPAERNQLIQRLPMGAVIKCMMY 298
Query: 331 FDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATGH--CVLVYMPAGQLARDIEKMSDEA 386
           + + FW   ++ G  ++ D     S  L+  K  G    ++ ++ A +  R + K+  E 
Sbjct: 299 YKEAFWKKKDYCGCMIIEDEDAPISITLDDTKPDGSLPAIMGFILARKADR-LAKLHKEI 357
Query: 387 AANFAFTQLKKIL--PDASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVD 443
                     K+L   +A  P+ Y   +W  +  S G Y+ Y   G        +R PV 
Sbjct: 358 RKKKICELYAKVLGSQEALHPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVG 417
Query: 444 NLFFAGEATSMSYPGSVHGAFSTGLMAAED 473
            +FFAG  T+  + G + GA   G  AA +
Sbjct: 418 RIFFAGTETATKWSGYMEGAVEAGERAARE 447

>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline, Crystal Form A Length = 527

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 100/450 (22%), Positives = 183/450 (40%), Gaps = 46/450 (10%)
Query: 47  LHDASFKVVLLESRDRVGGRV------HTDYSFGFPVDLGASWLHGVCQENPLAPVISRL 100
           L +    V++LE+RDRVGGR       H DY     VD+G +++ G  Q N +  +   L
Sbjct: 32  LTEYGVSVLVLEARDRVGGRTYTIRNEHVDY-----VDVGGAYV-GPTQ-NRILRLSKEL 84
Query: 101 GLPLYRTSGDNSVLYDHDLESRVLKTVV------VSLIQANLCYALFDMDGNQVPQELVT 154
           G+  Y+ +    ++     ++   +         ++ +  N  +   D  G ++P +   
Sbjct: 85  GIETYKVNVSERLVQYVKGKTYPFRGAFPPVWNPIAYLDYNNLWRTIDNMGKEIPTDAPW 144
Query: 155 KVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQWYLCR 210
           +   A +   K T K   +        R  + +F     + +    H+V      WY+ +
Sbjct: 145 EAQHA-DKWDKMTMKELIDKICWTKTARRFAYLF---VNINVTSEPHEVSALWFLWYVKQ 200
Query: 211 MEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHY 270
             G         S+ +  +E    GG G +    + ++     G  ++L H VT + +  
Sbjct: 201 CGG----TTRIFSVTNGGQERKFVGGSGQVSERIMDLL-----GDQVKLNHPVTHVDQSS 251
Query: 271 IGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMH 330
             + +     + +    V+ A+P   L A+ I F P LP  +   I  L +G   K +M+
Sbjct: 252 DNIIIETLNHEHYECKYVINAIP-PTLTAK-IHFRPELPAERNQLIQRLPMGAVIKCMMY 309
Query: 331 FDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATGH--CVLVYMPAGQLARDIEKMSDEA 386
           + + FW   ++ G  ++ D     S  L+  K  G    ++ ++ A +  R + K+  E 
Sbjct: 310 YKEAFWKKKDYCGCMIIEDEDAPISITLDDTKPDGSLPAIMGFILARKADR-LAKLHKEI 368
Query: 387 AANFAFTQLKKIL--PDASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVD 443
                     K+L   +A  P+ Y   +W  +  S G Y+ Y   G        +R PV 
Sbjct: 369 RKKKICELYAKVLGSQEALHPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVG 428
Query: 444 NLFFAGEATSMSYPGSVHGAFSTGLMAAED 473
            +FFAG  T+  + G + GA   G  AA +
Sbjct: 429 RIFFAGTETATKWSGYMEGAVEAGERAARE 458

>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With Harmine Length = 513

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 98/450 (21%), Positives = 182/450 (40%), Gaps = 46/450 (10%)
Query: 47  LHDASFKVVLLESRDRVGGRV------HTDYSFGFPVDLGASWLHGVCQENPLAPVISRL 100
           L +    V++LE+RDRVGGR       H DY     VD+G +++     +N +  +   L
Sbjct: 21  LTEYGVSVLVLEARDRVGGRTYTIRNEHVDY-----VDVGGAYVGPT--QNRILRLSKEL 73
Query: 101 GLPLYRTSGDNSVLYDHDLESRVLKTVV------VSLIQANLCYALFDMDGNQVPQELVT 154
           G+  Y+ +    ++     ++   +         ++ +  N  +   D  G ++P +   
Sbjct: 74  GIETYKVNVSERLVQYVKGKTYPFRGAFPPVWNPIAYLDYNNLWRTIDNMGKEIPTDAPW 133
Query: 155 KVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQWYLCR 210
           +   A +   K T K   +        R  + +F     + +    H+V      WY+ +
Sbjct: 134 EAQHA-DKWDKMTMKELIDKICWTKTARRFAYLF---VNINVTSEPHEVSALWFLWYVKQ 189
Query: 211 MEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHY 270
             G         S+ +  +E    GG G +    + ++     G  ++L H VT + +  
Sbjct: 190 CGG----TTRIFSVTNGGQERKFVGGSGQVSERIMDLL-----GDQVKLNHPVTHVDQSS 240
Query: 271 IGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMH 330
             + +     + +    V+ A+P   L A+ I F P LP  +   I  L +G   K +M+
Sbjct: 241 DNIIIETLNHEHYECKYVINAIP-PTLTAK-IHFRPELPAERNQLIQRLPMGAVIKCMMY 298
Query: 331 FDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATGH--CVLVYMPAGQLARDIEKMSDEA 386
           + + FW   ++ G  ++ D     S  L+  K  G    ++ ++ A +  R + K+  E 
Sbjct: 299 YKEAFWKKKDYCGCMIIEDEDAPISITLDDTKPDGSLPAIMGFILARKADR-LAKLHKEI 357
Query: 387 AANFAFTQLKKIL--PDASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVD 443
                     K+L   +A  P+ Y   +W  +  S G Y+ Y   G        +R PV 
Sbjct: 358 RKKKICELYAKVLGSQEALHPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVG 417
Query: 444 NLFFAGEATSMSYPGSVHGAFSTGLMAAED 473
            +FFAG  T+  + G + GA   G  AA +
Sbjct: 418 RIFFAGTETATKWSGYMEGAVEAGERAARE 447

>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For Substrates And Inhibitors Of Rat Monoamine Oxidase A Length = 534

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 95/449 (21%), Positives = 187/449 (41%), Gaps = 44/449 (9%)
Query: 47  LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
           L +    V++LE+RDRVGGR +T  +     VD+G +++     +N +  +   LG+  Y
Sbjct: 40  LSEYKINVLVLEARDRVGGRTYTVRNEHVKWVDVGGAYVGPT--QNRILRLSKELGIETY 97
Query: 106 RTSGDNSVLYDHDLESRVLKTVV------VSLIQANLCYALFDMDGNQVPQELVTKVGEA 159
           + + +  ++     ++   +         ++ +  N  +   D  G ++P +   +   A
Sbjct: 98  KVNVNERLVQYVKGKTYPFRGAFPPVWNPLAYLDYNNLWRTMDEMGKEIPVDAPWQARHA 157
Query: 160 FESILKETDKVREEHDED----MSIQRAISIVFDRRPELRLEGLAHKV----LQWYLCRM 211
                +E DK+  +   D        R  + +F     + +    H+V      WY+ + 
Sbjct: 158 -----QEWDKMTMKDLIDKICWTKTAREFAYLF---VNINVTSEPHEVSALWFLWYVRQC 209
Query: 212 EGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYI 271
            G     A   S+ +  +E    GG G +    + ++     G  ++L   VT I +   
Sbjct: 210 GG----TARIFSVTNGGQERKFVGGSGQVSEQIMGLL-----GDKVKLSSPVTYIDQTDD 260
Query: 272 GVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHF 331
            + V     + +    V+ A+P  +L A+ I F+P LP  +   I  L +G   K ++++
Sbjct: 261 NIIVETLNHEHYECKYVISAIP-PILTAK-IHFKPELPPERNQLIQRLPMGAVIKCMVYY 318
Query: 332 DKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATGH--CVLVYMPAGQLARDIEKMSDEAA 387
            + FW   ++ G  ++ D     +  L+  K  G    ++ ++ A +  R + K+  +  
Sbjct: 319 KEAFWKKKDYCGCMIIEDEEAPIAITLDDTKPDGSLPAIMGFILARKADR-LAKLHKDIR 377
Query: 388 ANFAFTQLKKIL--PDASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVDN 444
                    K+L   +A  P+ Y   +W  +  S G Y+ Y   G        +R PV  
Sbjct: 378 KRKICELYAKVLGSQEALYPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVGR 437
Query: 445 LFFAGEATSMSYPGSVHGAFSTGLMAAED 473
           ++FAG  T+  + G + GA   G  AA +
Sbjct: 438 IYFAGTETATQWSGYMEGAVEAGERAARE 466

>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera Ammodytes Ammodytes: Stabilization Of The Quaternary Structure By Divalent Ions And Structural Changes In The Dynamic Active Site Length = 486

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 107/454 (23%), Positives = 183/454 (40%), Gaps = 53/454 (11%)
Query: 47  LHDASFKVVLLESRDRVGGRV--HTDYSFGFPVDLGASWL---HGVCQENPLAPVISRLG 101
           L  A  KV +LE+ +R GGRV  H +   G+  +LG   +   H + +E      I + G
Sbjct: 52  LAGAGHKVTVLEASERAGGRVRTHRNSKEGWYANLGPMRIPEKHRIVRE-----YIRKFG 106
Query: 102 LPL--YRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEA 159
           L L  +    DN+  +  ++  RV +   V+     L Y +        P E     G+ 
Sbjct: 107 LNLNEFSQENDNAWYFIKNIRKRVGE---VNKDPGLLKYPV-------KPSEEGKSAGQL 156
Query: 160 FESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGL----AHKVLQWYLCRMEGWF 215
           +E  L     V++    + S        +  +  L  EG     A  ++   L    G++
Sbjct: 157 YEESLGSA--VKDLKRTNCSYILNKYDTYSTKEYLIKEGNLSPGAVDMIGDLLNEDSGYY 214
Query: 216 AADAETIS---LKSWDK--EELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHY 270
            +  E++    + +++K  +E++ G   L    Y  +         ++   RV KI ++ 
Sbjct: 215 VSFIESLKHDDIFAYEKRFDEIVGGMDQLPTSMYRAIEEK------VKFNARVIKIQQNA 268
Query: 271 IGVKVTVEGGK----TFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENK 326
             V VT +  +    +  AD V+V        AR I+FEP LP  K+ A+  +      K
Sbjct: 269 NQVTVTYQTPEKDTSSNTADYVIVCTT--SRAARRIQFEPPLPPKKQHALRSVHYRSGTK 326
Query: 327 IIMHFDKVFWPNVEFLGVVSDTSYGCS--YFLNLHKATGHCVLVYMPAGQLARDIEKMSD 384
           I +     FW +    G  S T       Y+ N + +TG  V++    G  A   + +  
Sbjct: 327 IFLTCSSKFWEDDGIHGGKSTTDLPSRFIYYPNHNFSTGVGVIIAYGIGDDANFFQALKF 386
Query: 385 EAAANFAFTQLKKILPDASSPIQY-----LVSHWGTDANSLGSYSYDTVGKSHDLYERLR 439
           +  A+  F  L  I       IQ      ++  W  D  ++G+ +  T  +     E L 
Sbjct: 387 KDCADIVFNDLSLIHQLPKEEIQSFCYPSMIQKWSLDKYAMGAITTFTPYQFQRFSEALT 446
Query: 440 IPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 473
            P   +FFAGE T+ ++ G +     +GL AA D
Sbjct: 447 APQGRIFFAGEYTAEAH-GWIDSTIKSGLTAARD 479

>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu Venom Length = 497

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 102/435 (23%), Positives = 171/435 (39%), Gaps = 48/435 (11%)
Query: 47  LHDASFKVVLLESRDRVGGRVHT--DYSFGFPVDLGASWL---HGVCQENPLAPVISRLG 101
           L +A  +V +LE+ +R GG+V T  +   G+  +LG   L   H + +E      I + G
Sbjct: 65  LANAGHQVTVLEASERAGGQVKTYRNEKEGWYANLGPMRLPEKHRIVRE-----YIRKFG 119
Query: 102 LPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFE 161
           L L   S +N   +        +K +   + + N    + D      P E+    G+ +E
Sbjct: 120 LQLNEFSQENENAW------YFIKNIRKRVGEVNKDPGVLDYPVK--PSEVGKSAGQLYE 171
Query: 162 SILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGL----AHKVLQWYLCRMEGWFAA 217
             L++   V E    + S        +  +  L  EG     A  ++   L    G++ +
Sbjct: 172 ESLQKA--VEELRRTNCSYMLNKYDTYSTKEYLLKEGNLSPGAVDMIGDLLNEDSGYYVS 229
Query: 218 DAETIS---LKSWDK--EELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIG 272
             E++    + +++K  +E++ G   L    Y  +         + L  RV KI +    
Sbjct: 230 FIESLKHDDIFAYEKRFDEIVGGMDKLPTSMYQAIQEK------VHLNARVIKIQQDVKE 283
Query: 273 VKVTVEGGK----TFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKII 328
           V VT +  +    +  AD V+V        AR IKFEP LP  K  A+  +      KI 
Sbjct: 284 VTVTYQTSEKETLSVTADYVIVCTT--SRAARRIKFEPPLPPKKAHALRSVHYRSGTKIF 341
Query: 329 MHFDKVFWPNVEFLGVVSDTSYGCS--YFLNLHKATGHCVLVYMPAGQLARDIEKMSDEA 386
           +   K FW +    G  S T       Y+ N +   G  V++    G  A   E +  E 
Sbjct: 342 LTCTKKFWEDDGIHGGKSTTDLPSRFIYYPNHNFPNGVGVIIAYGIGDDANYFEALDFED 401
Query: 387 AANFAFTQLKKILPDASSPIQ-----YLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIP 441
             +     L  I       IQ      ++  W  D  ++G  +  T  +     E L  P
Sbjct: 402 CGDIVINDLSLIHQLPKEEIQAICRPSMIQRWSLDKYAMGGITTFTPYQFQHFSEALTAP 461
Query: 442 VDNLFFAGEATSMSY 456
           VD ++FAGE T+ ++
Sbjct: 462 VDRIYFAGEYTAQAH 476

>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase From Aspergillus Niger. Length = 495

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 99/463 (21%), Positives = 175/463 (37%), Gaps = 86/463 (18%)
Query: 50  ASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHG----VCQE-------NPLAPVIS 98
           A FK +LLE+RDR+GGR  +    G+P ++G +W+H     V +E       N L+P  +
Sbjct: 61  AGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWREITRYKMHNALSPSFN 120
Query: 99  -RLGLPLY--RTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYAL----FDMDGNQVPQE 151
              G+  +  RT+   S    H+ E  +L++ +      +         F  D   VP+ 
Sbjct: 121 FSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPE- 179
Query: 152 LVTKVGEAFESILKETDKVREE--HDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYL- 208
              K  E   S  +  D++R+E   +E  S++  I +      E    G   + L W+  
Sbjct: 180 -FRKYDEM--SYSERIDQIRDELSLNERSSLEAFILLCSGGTLENSSFG---EFLHWWAM 233
Query: 209 ----------CRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIR 258
                     C M   F       + + W++      G G +  GY+             
Sbjct: 234 SGYTYQGCMDCLMSYKFKDGQSAFARRFWEE----AAGTGRL--GYV------------- 274
Query: 259 LGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDD 318
            G  V  +       +VT   G+ FVA  VV  +PL VL   TI+F P L   + +A+  
Sbjct: 275 FGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLS--TIQFSPALSTERISAMQA 332
Query: 319 LGVG--------IENKIIMHFDKVFWPNVEFLGVVSD--TSYGCSYFLNLHKATGHCVLV 368
             V         ++NK +  +  + +P  +    + D  T  G ++ +    +  H    
Sbjct: 333 GHVSMCTKVHAEVDNKDMRSWTGIAYPFNKLCYAIGDGTTPAGNTHLVCFGNSANHI--- 389
Query: 369 YMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTV 428
             P   +   ++ +   A   F   +L             +  +W  D  + G++ +   
Sbjct: 390 -QPDEDVRETLKAVGQLAPGTFGVKRL-------------VFHNWVKDEFAKGAWFFSRP 435
Query: 429 GKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 471
           G   +  + LR     + FA    ++ +   + GA   G  AA
Sbjct: 436 GMVSECLQGLREKHGGVVFANSDWALGWRSFIDGAIEEGTRAA 478

>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase From Aspergillus Niger. Length = 495

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 105/454 (23%), Positives = 173/454 (38%), Gaps = 68/454 (14%)
Query: 50  ASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHG----VCQE-------NPLAPVIS 98
           A FK +LLE+RDR+GGR  +    G+P ++G +W+H     V +E       N L+P  +
Sbjct: 61  AGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWREITRYKMHNALSPSFN 120
Query: 99  -RLGLPLY--RTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYAL----FDMDGNQVPQE 151
              G+  +  RT+   S    H+ E  +L++ +      +         F  D   VP+ 
Sbjct: 121 FSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPE- 179
Query: 152 LVTKVGEAFESILKETDKVREE--HDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYL- 208
              K  E   S  +  D++R+E   +E  S++  I +      E    G   + L W+  
Sbjct: 180 -FRKYDEM--SYSERIDQIRDELSLNERSSLEAFILLCSGGTLENSSFG---EFLHWWAM 233
Query: 209 ----------CRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIR 258
                     C M   F       + + W++      G G +  GY+             
Sbjct: 234 SGYTYQGCMDCLMSYKFKDGQSAFARRFWEE----AAGTGRL--GYV------------- 274
Query: 259 LGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDD 318
            G  V  +       +VT   G+ FVA  VV  +PL VL   TI+F P L   + +A+  
Sbjct: 275 FGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLS--TIQFSPALSTERISAMQA 332
Query: 319 LGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARD 378
             V +  K+    D        + G+    +  C    +     G+  LV    G  A  
Sbjct: 333 GHVSMCTKVHAEVDNK--DMRSWTGIAYPFNKLCYAIGDGTTPAGNTHLVCF--GTDANH 388
Query: 379 IEKMSDEAAANFAFTQLKKILPDASSPIQYLVSH-WGTDANSLGSYSYDTVGKSHDLYER 437
           I+   D      A  QL       +  ++ LV H W  D  + G++ +   G   +  + 
Sbjct: 389 IQPDEDVRETLKAVGQLAP----GTFGVKRLVFHNWVKDEFAKGAWFFSRPGMVSECLQG 444
Query: 438 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 471
           LR     + FA    ++ +   + GA   G  AA
Sbjct: 445 LREKHGGVVFANSDWALGWRSFIDGAIEEGTRAA 478

>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase From Aspergillus Niger Length = 495

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 105/454 (23%), Positives = 173/454 (38%), Gaps = 68/454 (14%)
Query: 50  ASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHG----VCQE-------NPLAPVIS 98
           A FK +LLE+RDR+GGR  +    G+P ++G +W+H     V +E       N L+P  +
Sbjct: 61  AGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWREITRYKMHNALSPSFN 120
Query: 99  -RLGLPLY--RTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYAL----FDMDGNQVPQE 151
              G+  +  RT+   S    H+ E  +L++ +      +         F  D   VP+ 
Sbjct: 121 FSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPE- 179
Query: 152 LVTKVGEAFESILKETDKVREE--HDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYL- 208
              K  E   S  +  D++R+E   +E  S++  I +      E    G   + L W+  
Sbjct: 180 -FRKYDEM--SYSERIDQIRDELSLNERSSLEAFILLCSGGTLENSSFG---EFLHWWAM 233
Query: 209 ----------CRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIR 258
                     C M   F       + + W++      G G +  GY+             
Sbjct: 234 SGYTYQGCMDCLMSYKFKDGQSAFARRFWEE----AAGTGRL--GYV------------- 274
Query: 259 LGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDD 318
            G  V  +       +VT   G+ FVA  VV  +PL VL   TI+F P L   + +A+  
Sbjct: 275 FGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLS--TIQFSPALSTERISAMQA 332
Query: 319 LGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARD 378
             V +  K+    D        + G+    +  C    +     G+  LV    G  A  
Sbjct: 333 GHVSMCTKVHAEVDNK--DMRSWTGIAYPFNKLCYAIGDGTTPAGNTHLVCF--GTDANH 388
Query: 379 IEKMSDEAAANFAFTQLKKILPDASSPIQYLVSH-WGTDANSLGSYSYDTVGKSHDLYER 437
           I+   D      A  QL       +  ++ LV H W  D  + G++ +   G   +  + 
Sbjct: 389 IQPDEDVRETLKAVGQLAP----GTFGVKRLVFHNWVKDEFAKGAWFFSRPGMVSECLQG 444
Query: 438 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 471
           LR     + FA    ++ +   + GA   G  AA
Sbjct: 445 LREKHGGVVFANSDWALGWRSFIDGAIEEGTRAA 478

>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant Length = 453

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 104/466 (22%), Positives = 172/466 (36%), Gaps = 74/466 (15%)
Query: 47  LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106
           L  A   V ++E+RDRVGGR  TD   G  +++G  W+     +  L  ++  LGL  + 
Sbjct: 24  LRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS--PDQTALISLLDELGLKTFE 81
Query: 107 TSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKE 166
              +   +Y      R   T                  G+  P    TK         KE
Sbjct: 82  RYREGESVYISSAGERTRYT------------------GDSFPTNETTK---------KE 114
Query: 167 TDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLK- 225
            D++ +E D D++ Q      +       L+ ++ K  QW + + +   A D   + +  
Sbjct: 115 MDRLIDEMD-DLAAQIGAEEPWAHPLARDLDTVSFK--QWLINQSDDAEARDNIGLFIAG 171
Query: 226 ----------SWDKEELLPGGHG--------------LMVRGYLPVINTLAKGL--DIRL 259
                     S  +  L+    G               ++ G   V   +A+ L  D+ L
Sbjct: 172 GMLTKPAHSFSALQAVLMAASAGSFSHLVDEDFILDKRVIGGMQQVSIRMAEALGDDVFL 231
Query: 260 GHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDL 319
              V  +  +  G  V  +G     A  V++AVP  +     I ++P LP  +       
Sbjct: 232 NAPVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYS--RISYDPPLPRRQHQMHQHQ 289
Query: 320 GVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLN-LHKATGH----CVLVYMPAGQ 374
            +G+  K+   ++  FW      G    T +G S  +  ++  T H      LV   + +
Sbjct: 290 SLGLVIKVHAVYETPFWREDGLSG----TGFGASEVVQEVYDNTNHEDDRGTLVAFVSDE 345
Query: 375 LARDIEKMSDEAAANFAFTQLKKIL-PDASSPIQYLVSHWGTDANSLGSY--SYDTVGKS 431
            A  + ++S E         L + L P A  P+ Y  S WG++  + G Y  S+D +G  
Sbjct: 346 KADAMFELSAEERKATILASLARYLGPKAEEPVVYYESDWGSEEWTRGCYTASFD-LGGL 404
Query: 432 HDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 477
           H      R PV  + F+    +    G V GA   G   A D   R
Sbjct: 405 HRYGADSRTPVGPIHFSCSDIAAEGYGHVDGAVRMGQRTAADIIAR 450

>pdb|3K7M|X Chain X, Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase From Arthrobacter Nicotinovorans Length = 431

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 98/437 (22%), Positives = 183/437 (41%), Gaps = 59/437 (13%)
Query: 47  LHDASFKVVLLESRDRVGGRVHTDYSFGFP---VDLGASWLHGVCQENP-LAPVISRLGL 102
           L +A  KV+LLE  +R+GGR ++  S   P   V++G ++LH   + +P LA  + R G+
Sbjct: 20  LTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLH--RKHHPRLAAELDRYGI 77
Query: 103 PLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFES 162
           P    S   S         R+  T V      +  + +   +   V     T + +A   
Sbjct: 78  PTAAASEFTS------FRHRLGPTAV------DQAFPIPGSEAVAVEAATYTLLRDAHRI 125
Query: 163 ILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETI 222
            L++  + ++  D D+ +   +        +L L  ++ + L  +   M G  A  A  +
Sbjct: 126 DLEKGLENQDLEDLDIPLNEYVD-------KLDLPPVSRQFLLAWAWNMLGQPADQASAL 178
Query: 223 SLKSWDKEELLPGGH----GLMV-------RGYLPVINTLAKGL-DIRLGHRVTKITRHY 270
            +      +L+   H    G+++        G   +++ +++ + +IRL   VT I +  
Sbjct: 179 WML-----QLVAAHHYSILGVVLSLDEVFSNGSADLVDAMSQEIPEIRLQTVVTGIDQSG 233
Query: 271 IGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMH 330
             V VTV+ G  F A +V+VA P+     R I F P LP+ + + I++   G   KI++H
Sbjct: 234 DVVNVTVKDGHAFQAHSVIVATPMNTW--RRIVFTPALPERRRSVIEEGHGGQGLKILIH 291
Query: 331 FDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQL-ARDIEKMSDEAAAN 389
             +     +E +G   D  +   Y       +   ++ +  +G     DI  + D  A  
Sbjct: 292 V-RGAEAGIECVG---DGIFPTLYDYCEVSESERLLVAFTDSGSFDPTDIGAVKD--AVL 345
Query: 390 FAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAG 449
           +   +++ +  D           W  D    G +    VG+   +++ L  P   + F G
Sbjct: 346 YYLPEVEVLGIDYHD--------WIADPLFEGPWVAPRVGQFSRVHKELGEPAGRIHFVG 397
Query: 450 EATSMSYPGSVHGAFST 466
              S+ +PG + GA  T
Sbjct: 398 SDVSLEFPGYIEGALET 414

>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine Oxidase, Crystal Form P3121 Length = 425

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 98/437 (22%), Positives = 183/437 (41%), Gaps = 59/437 (13%)
Query: 47  LHDASFKVVLLESRDRVGGRVHTDYSFGFP---VDLGASWLHGVCQENP-LAPVISRLGL 102
           L +A  KV+LLE  +R+GGR ++  S   P   V++G ++LH   + +P LA  + R G+
Sbjct: 20  LTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLH--RKHHPRLAAELDRYGI 77
Query: 103 PLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFES 162
           P    S   S         R+  T V      +  + +   +   V     T + +A   
Sbjct: 78  PTAAASEFTS------FRHRLGPTAV------DQAFPIPGSEAVAVEAATYTLLRDAHRI 125
Query: 163 ILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETI 222
            L++  + ++  D D+ +   +        +L L  ++ + L  +   M G  A  A  +
Sbjct: 126 DLEKGLENQDLEDLDIPLNEYVD-------KLDLPPVSRQFLLAWAWNMLGQPADQASAL 178
Query: 223 SLKSWDKEELLPGGH----GLMV-------RGYLPVINTLAKGL-DIRLGHRVTKITRHY 270
            +      +L+   H    G+++        G   +++ +++ + +IRL   VT I +  
Sbjct: 179 WML-----QLVAAHHYSILGVVLSLDEVFSNGSADLVDAMSQEIPEIRLQTVVTGIDQSG 233
Query: 271 IGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMH 330
             V VTV+ G  F A +V+VA P+     R I F P LP+ + + I++   G   KI++H
Sbjct: 234 DVVNVTVKDGHAFQAHSVIVATPMNTW--RRIVFTPALPERRRSVIEEGHGGQGLKILIH 291
Query: 331 FDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQL-ARDIEKMSDEAAAN 389
             +     +E +G   D  +   Y       +   ++ +  +G     DI  + D  A  
Sbjct: 292 V-RGAEAGIECVG---DGIFPTLYDYCEVSESERLLVAFTDSGSFDPTDIGAVKD--AVL 345
Query: 390 FAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAG 449
           +   +++ +  D           W  D    G +    VG+   +++ L  P   + F G
Sbjct: 346 YYLPEVEVLGIDYHD--------WIADPLFEGPWVAPRVGQFSRVHKELGEPAGRIHFVG 397
Query: 450 EATSMSYPGSVHGAFST 466
              S+ +PG + GA  T
Sbjct: 398 SDVSLEFPGYIEGALET 414

>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas Length = 486

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 94/240 (39%), Gaps = 14/240 (5%)
Query: 245 LPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGK----TFVADAVVVAVPLGVLKAR 300
           LP     A    + L  +V KI ++   V V  +       +  AD V+V         R
Sbjct: 243 LPTSMYRAIEEKVHLNAQVIKIQKNAEKVTVVYQTPAKEMASVTADYVIVCTTSRA--TR 300
Query: 301 TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCS--YFLNL 358
            IKFEP LP  K  A+  +      KI +   K FW +    G  S T       Y+ N 
Sbjct: 301 RIKFEPPLPPKKAHALRSVHYRSGTKIFLTCTKKFWEDEGIHGGKSTTDLPSRFIYYPNH 360
Query: 359 HKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQY-----LVSHW 413
           +  +G  V++    G  A   + +  +  A+     L  I       IQ      ++  W
Sbjct: 361 NFTSGVGVIIAYGIGDDANFFQALDFKDCADIVINDLSLIHQLPREEIQTFCYPSMIQKW 420
Query: 414 GTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 473
             D  ++G  +  T  +     E L   VD ++FAGE T+ ++ G +     +GL AA D
Sbjct: 421 SLDKYAMGGITTFTPYQFQHFSESLTASVDRIYFAGEHTAEAH-GWIDSTIKSGLRAARD 479

>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine Oxidase: P15i-A394c Double Mutant Length = 453

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 103/466 (22%), Positives = 171/466 (36%), Gaps = 74/466 (15%)
Query: 47  LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106
           L  A   V ++E+RDRVGGR  TD   G  +++G  W+     +  L  ++  LGL  + 
Sbjct: 24  LRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS--PDQTALISLLDELGLKTFE 81
Query: 107 TSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKE 166
              +   +Y      R   T                  G+  P    TK         KE
Sbjct: 82  RYREGESVYISSAGERTRYT------------------GDSFPTNETTK---------KE 114
Query: 167 TDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLK- 225
            D++ +E D D++ Q      +       L+ ++ K  QW + + +   A D   + +  
Sbjct: 115 MDRLIDEMD-DLAAQIGAEEPWAHPLARDLDTVSFK--QWLINQSDDAEARDNIGLFIAG 171
Query: 226 ----------SWDKEELLPGGHG--------------LMVRGYLPVINTLAKGL--DIRL 259
                     S  +  L+    G               ++ G   V   +A+ L  D+ L
Sbjct: 172 GMLTKPAHSFSALQAVLMAASAGSFSHLVDEDFILDKRVIGGMQQVSIRMAEALGDDVFL 231
Query: 260 GHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDL 319
              V  +  +  G  V  +G     A  V++AVP  +     I ++P LP  +       
Sbjct: 232 NAPVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYS--RISYDPPLPRRQHQMHQHQ 289
Query: 320 GVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLN-LHKATGH----CVLVYMPAGQ 374
            +G+  K+   ++  FW      G    T +G S  +  ++  T H      LV   + +
Sbjct: 290 SLGLVIKVHAVYETPFWREDGLSG----TGFGASEVVQEVYDNTNHEDDRGTLVAFVSDE 345
Query: 375 LARDIEKMSDEAAANFAFTQLKKIL-PDASSPIQYLVSHWGTDANSLGSY--SYDTVGKS 431
            A  + ++S E         L + L P A  P+ Y  S WG++  + G Y  S+D +G  
Sbjct: 346 KADAMFELSAEERKATILASLARYLGPKAEEPVVYYESDWGSEEWTRGCYAASFD-LGGL 404
Query: 432 HDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 477
           H      R PV  + F+    +      V GA   G   A D   R
Sbjct: 405 HRYGADSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIAR 450

>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine Oxidase: Wild Type Enzyme Length = 453

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 93/234 (39%), Gaps = 15/234 (6%)
Query: 252 AKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDW 311
           A G D+ L   V  +  +  G  V  +G     A  V++AVP  +     I ++P LP  
Sbjct: 224 ALGDDVFLNAPVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYS--RISYDPPLPRR 281
Query: 312 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLN-LHKATGH----CV 366
           +        +G+  K+   ++  FW      G    T +G S  +  ++  T H      
Sbjct: 282 QHQMHQHQSLGLVIKVHAVYETPFWREDGLSG----TGFGASEVVQEVYDNTNHEDDRGT 337
Query: 367 LVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL-PDASSPIQYLVSHWGTDANSLGSY-- 423
           LV   + + A  + ++S E         L + L P A  P+ Y  S WG++  + G+Y  
Sbjct: 338 LVAFVSDEKADAMFELSAEERKATILASLARYLGPKAEEPVVYYESDWGSEEWTRGAYAA 397
Query: 424 SYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 477
           S+D +G  H      R PV  + F+    +      V GA   G   A D   R
Sbjct: 398 SFD-LGGLHRYGADSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIAR 450

>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine Oxidase: A394c Mutant Length = 453

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 92/234 (39%), Gaps = 15/234 (6%)
Query: 252 AKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDW 311
           A G D+ L   V  +  +  G  V  +G     A  V++AVP  +     I ++P LP  
Sbjct: 224 ALGDDVFLNAPVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYS--RISYDPPLPRR 281
Query: 312 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLN-LHKATGH----CV 366
           +        +G+  K+   ++  FW      G    T +G S  +  ++  T H      
Sbjct: 282 QHQMHQHQSLGLVIKVHAVYETPFWREDGLSG----TGFGASEVVQEVYDNTNHEDDRGT 337
Query: 367 LVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL-PDASSPIQYLVSHWGTDANSLGSY-- 423
           LV   + + A  + ++S E         L + L P A  P+ Y  S WG++  + G Y  
Sbjct: 338 LVAFVSDEKADAMFELSAEERKATILASLARYLGPKAEEPVVYYESDWGSEEWTRGCYAA 397
Query: 424 SYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 477
           S+D +G  H      R PV  + F+    +      V GA   G   A D   R
Sbjct: 398 SFD-LGGLHRYGADSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIAR 450

>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From Arthrobacter Aurescens Length = 482

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 47  LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106
           L  A   V +LE+RDRVGGR  TD   G  +++G  W+     +  L  ++  LGL +Y 
Sbjct: 26  LKKAGLSVAVLEARDRVGGRTWTDTIDGAMLEIGGQWVS--PDQTVLMELLDELGLKMYS 83
Query: 107 TSGDNSVLY 115
              D   +Y
Sbjct: 84  RYRDGESVY 92

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	507
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	1e-130
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	1e-127
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	1e-126
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	1e-115
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	1e-107
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	1e-102
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	1e-100
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	3e-96
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	4e-89
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	2e-88
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	4e-30
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	2e-27
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	4e-27
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	1e-25
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	1e-25
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	5e-25
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	6e-24
2e1m_C	181	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	2e-21
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	5e-20
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	7e-18
2e1m_B	130	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	2e-17
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	2e-17
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	6e-15
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	2e-13
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	4e-13
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	7e-04
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	4e-11
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	3e-07
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	5e-09
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	3e-07
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	5e-07
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	6e-07
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	7e-07
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	1e-06
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	3e-04
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	1e-06
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	2e-06
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	8e-04
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	3e-06
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	5e-06
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	5e-06
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	6e-06
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	8e-06
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	9e-06
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	9e-06
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	9e-06
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	9e-06
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	1e-05
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	1e-05
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	2e-05
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	2e-05
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	2e-05
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	2e-05
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	2e-05
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	3e-05
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	3e-05
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	4e-05
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	4e-05
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	6e-05
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	6e-05
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	6e-05
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	6e-05
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	7e-05
1ojt_A	482	Surface protein; redox-active center, glycolysis,	8e-05
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	9e-05
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	1e-04
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	1e-04
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	1e-04
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	2e-04
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	2e-04
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	2e-04
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	2e-04
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	2e-04
3atr_A	453	Conserved archaeal protein; saturating double bond	3e-04
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	4e-04
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	4e-04
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	4e-04
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	5e-04
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	6e-04
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	7e-04
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	7e-04
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	8e-04

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472

 Score =  385 bits (989), Expect = e-130
 Identities = 131/485 (27%), Positives = 207/485 (42%), Gaps = 54/485 (11%)

Query: 27  RSPSVIVIGAGMAGVAAARALHDASFK-VVLLESRDRVGGRVHTDYSFGFPVDLGASWLH 85
             P VIV+GAGM+G++AA+ L +A    +++LE+ D +GGR+H     G  V+LGA+W+ 
Sbjct: 3   VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVE 62

Query: 86  GV--CQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDM 143
           GV   + NP+ P+++         S  + +  +   E                   ++D 
Sbjct: 63  GVNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDG----------------GVYDE 106

Query: 144 DGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV 203
           D  Q   EL   V E  E    +          D     A+  + + +P          V
Sbjct: 107 DYVQKRIELADSVEEMGE----KLSATLHASGRDDMSILAMQRLNEHQPNGPAT-PVDMV 161

Query: 204 LQWYLCRMEGWFAADAETISLKSWDKEELLP--GGHGLMV---RGYLPVINTLAKGL--- 255
           + +Y  + +  FA      SL++          G     V   RGY  V+  LA      
Sbjct: 162 VDYY--KFDYEFAEPPRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKT 219

Query: 256 ----------DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFE 305
                      ++L   V +I     GV V  E    + AD V+V+  LGVL++  I+F+
Sbjct: 220 DDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFK 279

Query: 306 PRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVE----FLGVVSDTSYGCSYFLNLHKA 361
           P+LP WK  AI    + +  KI + F + FWP  +    FL   S   Y   +     + 
Sbjct: 280 PKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQY 339

Query: 362 TGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANS 419
               VL+     + +R IE+ SDE         L+K+ P  D       LV  W +D   
Sbjct: 340 PDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFY 399

Query: 420 LGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 479
            G++S   VG +   Y++LR PV  ++F GE TS  Y G VHGA+ +G+ +AE     ++
Sbjct: 400 KGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAE----ILI 455

Query: 480 ERYGE 484
               +
Sbjct: 456 NCAQK 460

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score =  378 bits (973), Expect = e-127
 Identities = 94/472 (19%), Positives = 163/472 (34%), Gaps = 40/472 (8%)

Query: 27  RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHG 86
               V ++GAG +G+AAA AL  A   V ++E+RDRVGGR  TD   G  +++G  W+  
Sbjct: 4   LQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSP 63

Query: 87  VCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGN 146
                 L  ++  LGL  +    +   +Y      R                  +  D  
Sbjct: 64  DQ--TALISLLDELGLKTFERYREGESVYISSAGERT----------------RYTGDSF 105

Query: 147 QVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQW 206
              +    ++    + +     ++  E      + R +  V  ++  +     A      
Sbjct: 106 PTNETTKKEMDRLIDEMDDLAAQIGAEEPWAHPLARDLDTVSFKQWLINQSDDAEARDNI 165

Query: 207 YLCRMEGWFAADAETISLKSWDKEELLPGG-----------HGLMVRGYLPVINTLAKGL 255
            L    G     A + S           G               ++ G   V   +A+ L
Sbjct: 166 GLFIAGGMLTKPAHSFSALQAVLMAASAGSFSHLVDEDFILDKRVIGGMQQVSIRMAEAL 225

Query: 256 --DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKE 313
             D+ L   V  +  +  G  V  +G     A  V++AVP  +     I ++P LP  + 
Sbjct: 226 GDDVFLNAPVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYS--RISYDPPLPRRQH 283

Query: 314 AAIDDLGVGIENKIIMHFDKVFWPNVEFLG-VVSDTSYGCSYFLNLHKATGHCVLVYMPA 372
                  +G+  K+   ++  FW      G     +      + N +       LV   +
Sbjct: 284 QMHQHQSLGLVIKVHAVYETPFWREDGLSGTGFGASEVVQEVYDNTNHEDDRGTLVAFVS 343

Query: 373 GQLARDIEKMSDEAAANFAFTQLKKIL-PDASSPIQYLVSHWGTDANSLGSYSYD-TVGK 430
            + A  + ++S E         L + L P A  P+ Y  S WG++  + G Y+    +G 
Sbjct: 344 DEKADAMFELSAEERKATILASLARYLGPKAEEPVVYYESDWGSEEWTRGCYAASFDLGG 403

Query: 431 SHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERY 482
            H      R PV  + F+    +      V GA   G   A      ++ R 
Sbjct: 404 LHRYGADSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAA----DIIARS 451

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score =  377 bits (970), Expect = e-126
 Identities = 111/489 (22%), Positives = 204/489 (41%), Gaps = 30/489 (6%)

Query: 26  ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSF-GFPVDLGASWL 84
           +    V+V+G G++G+AAA+ LHD+   VV+LE+RDRVGGR +T  +     VDLG S++
Sbjct: 2   SNKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYV 61

Query: 85  HGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVV------VSLIQANLCY 138
                +N +  +   LGL  Y+ +    +++    +S   +         ++ +  N  +
Sbjct: 62  GP--TQNRILRLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFW 119

Query: 139 ALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEG 198
              D  G ++P +   K   A E       ++ ++     S ++  ++  +         
Sbjct: 120 RTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHE 179

Query: 199 LAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIR 258
           ++     WY+ +  G        IS  +  +E    GG G +    + ++     G  ++
Sbjct: 180 VSALWFLWYVKQCGGTT----RIISTTNGGQERKFVGGSGQVSERIMDLL-----GDRVK 230

Query: 259 LGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDD 318
           L   V  I +    V V     + + A  V+ A+P  +     I F P LP  +   I  
Sbjct: 231 LERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMK--IHFNPPLPMMRNQMITR 288

Query: 319 LGVGIENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQL 375
           + +G   K I+++ + FW   ++ G  ++       +Y L+  K  G +  ++       
Sbjct: 289 VPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHK 348

Query: 376 ARDIEKMSDEAAANFAFTQLKKILPD--ASSPIQYLVSHWGTDANSLGSYS-YDTVGKSH 432
           AR + +++ E           K+L    A  P+ Y   +W  +  S G Y+ Y   G   
Sbjct: 349 ARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILT 408

Query: 433 DLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGELDLFQPVM 492
                LR PVD ++FAG  T+  + G + GA   G  AA      +L   G++   +   
Sbjct: 409 QYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAR----EILHAMGKIPEDEIWQ 464

Query: 493 GEETPISVP 501
            E   + VP
Sbjct: 465 SEPESVDVP 473

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score =  345 bits (886), Expect = e-115
 Identities = 94/454 (20%), Positives = 172/454 (37%), Gaps = 47/454 (10%)

Query: 31  VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSF---GFPVDLGASWLHGV 87
            IV+G G +G+ AAR L +A  KV+LLE  +R+GGR ++  S    G  V++G ++LH  
Sbjct: 4   AIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHR- 62

Query: 88  CQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQ 147
                LA  + R G+P    S   S  +                                
Sbjct: 63  KHHPRLAAELDRYGIPTAAASEFTSFRHRL--------------------GPTAVDQAFP 102

Query: 148 VPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRR-PELRLEGLAHKVLQW 206
           +P      V  A  ++L++  ++  E   +      + I  +    +L L  ++ + L  
Sbjct: 103 IPGSEAVAVEAATYTLLRDAHRIDLEKGLENQDLEDLDIPLNEYVDKLDLPPVSRQFLLA 162

Query: 207 YLCRMEGWFAADAETISLKSWDK------EELLPGGHGLMVRGYLPVINTLAKGL-DIRL 259
           +   M G  A  A  + +             ++     +   G   +++ +++ + +IRL
Sbjct: 163 WAWNMLGQPADQASALWMLQLVAAHHYSILGVVLSLDEVFSNGSADLVDAMSQEIPEIRL 222

Query: 260 GHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDL 319
              VT I +    V VTV+ G  F A +V+VA P+   +   I F P LP+ + + I++ 
Sbjct: 223 QTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTWR--RIVFTPALPERRRSVIEEG 280

Query: 320 GVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDI 379
             G   KI++H           +  V D  +   Y       +   ++ +  +       
Sbjct: 281 HGGQGLKILIHVRGAEAG----IECVGDGIFPTLYDYCEVSESERLLVAFTDS----GSF 332

Query: 380 EKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLR 439
           +     A  +     L ++       +      W  D    G +    VG+   +++ L 
Sbjct: 333 DPTDIGAVKDAVLYYLPEV-----EVLGIDYHDWIADPLFEGPWVAPRVGQFSRVHKELG 387

Query: 440 IPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 473
            P   + F G   S+ +PG + GA  T   A   
Sbjct: 388 EPAGRIHFVGSDVSLEFPGYIEGALETAECAVNA 421

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516

 Score =  327 bits (839), Expect = e-107
 Identities = 120/535 (22%), Positives = 197/535 (36%), Gaps = 107/535 (20%)

Query: 26  ARSPSVIVIGAGMAGVAAARALHDASFK-VVLLESRDRVGGRVHTDYSF-GFPVDLGASW 83
                VI+IGAG+AG+ AA  LH    +  ++LE+RDRVGGR+ T   + G   D+GASW
Sbjct: 6   PAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASW 65

Query: 84  LHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDM 143
            H     NPL    ++L L   RT      ++D D                   +   D 
Sbjct: 66  HHD-TLTNPLFLEEAQLSLNDGRTR----FVFDDD------------------NFIYIDE 102

Query: 144 DGNQVP--QELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAH 201
           +  +V   +EL+ ++ +   S   E +  +     D S  + +     +R +  L     
Sbjct: 103 ERGRVDHDKELLLEIVDNEMSKFAELEFHQHLGVSDCSFFQLVMKYLLQRRQF-LTNDQI 161

Query: 202 KVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLD---IR 258
           + L      +E W   D + +S K          G       Y  V+  +A+      ++
Sbjct: 162 RYLPQLCRYLELWHGLDWKLLSAKDTYFGH---QGRNAFALNYDSVVQRIAQSFPQNWLK 218

Query: 259 LGHRVTKITRHYI-GVKVTVEGGKTFVADAVVVAVPLGVLKAR---------TIKFEPRL 308
           L   V  ITR     V V  E G  + AD V++ VP  VL             I+F+P L
Sbjct: 219 LSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPL 278

Query: 309 PDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---------------- 351
               + A D +  G   K+I  F++  W      +  +++++                  
Sbjct: 279 KPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLDELDS 338

Query: 352 ------------------CSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAF- 392
                               +F+NL K+TG    + +    L   IE + ++    F+F 
Sbjct: 339 MLEREDSQKHTSVTCWSQPLFFVNLSKSTGVASFMMLMQAPLTNHIESIREDKERLFSFF 398

Query: 393 --------------------TQLKKIL-PDASSPIQYLVSHWGTDANSLGSYSYDTVGKS 431
                                 ++ I   +       +VS+W  D  S G+YS    G  
Sbjct: 399 QPVLNKIMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDPYSRGAYSACFPGDD 458

Query: 432 -HDLYERLRIPVDN-LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGE 484
             D+   +    D+ + FAGE T M   G  +GA+ +G   A     R+ +    
Sbjct: 459 PVDMVVAMSNGQDSRIRFAGEHTIMDGAGCAYGAWESGRREAT----RISDLLKL 509

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score =  315 bits (809), Expect = e-102
 Identities = 91/487 (18%), Positives = 159/487 (32%), Gaps = 48/487 (9%)

Query: 18  SNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPV 77
           +N     +     VIVIG G  G+ A R L  A FK +LLE+RDR+GGR  +    G+P 
Sbjct: 29  TNIEDTDKDGPWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPY 88

Query: 78  DLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLC 137
           ++G +W+H   Q +     I+R  +    +   N     +  + R   T    +      
Sbjct: 89  EMGGTWVHW-HQSHVWR-EITRYKMHNALSPSFNFSRGVNHFQLRTNPTTSTYMTHEA-- 144

Query: 138 YALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLE 197
                        EL+      F ++     +       DM          +     R++
Sbjct: 145 -----------EDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPEFRKYDEMSYSERID 193

Query: 198 GLAHKVLQWYLCRMEGW----FAADAETISLKSWDKEELLPGGHGL----------MVRG 243
            +  ++       +E +         E  S   +     + G                 G
Sbjct: 194 QIRDELSLNERSSLEAFILLCSGGTLENSSFGEFLHWWAMSGYTYQGCMDCLMSYKFKDG 253

Query: 244 YLPVINTLAKGL------DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 297
                    +            G  V  +       +VT   G+ FVA  VV  +PL VL
Sbjct: 254 QSAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVL 313

Query: 298 KARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLN 357
              TI+F P L   + +A+    V +  K+    D        + G+    +  C    +
Sbjct: 314 S--TIQFSPALSTERISAMQAGHVSMCTKVHAEVDNKDMR--SWTGIAYPFNKLCYAIGD 369

Query: 358 LHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDA 417
                G+  LV             +  +         + ++ P      + +  +W  D 
Sbjct: 370 GTTPAGNTHLVCF-----GNSANHIQPDEDVRETLKAVGQLAPGTFGVKRLVFHNWVKDE 424

Query: 418 NSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 477
            + G++ +   G   +  + LR     + FA    ++ +   + GA   G  AA      
Sbjct: 425 FAKGAWFFSRPGMVSECLQGLREKHGGVVFANSDWALGWRSFIDGAIEEGTRAAR----V 480

Query: 478 VLERYGE 484
           VLE  G 
Sbjct: 481 VLEELGT 487

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score =  309 bits (794), Expect = e-100
 Identities = 96/472 (20%), Positives = 175/472 (37%), Gaps = 33/472 (6%)

Query: 19  NNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS--FGFP 76
            N  K  +    V+++GAGMAG++AA  L  A  +V +LE+ +R GGRV T  +   G+ 
Sbjct: 24  RNGLKATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWY 83

Query: 77  VDLGASWLHGVCQENPLAPVISRLGLPL--YRTSGDNSVLYDHDLESRVLKTVVVSLIQA 134
            +LG   L        +   I +  L L  +    DN+  +  ++  +      V  ++ 
Sbjct: 84  ANLGPMRLPEK--HRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKK------VGEVKK 135

Query: 135 NLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPEL 194
           +     + +  ++  +       E+   +++E    R      ++     S       E 
Sbjct: 136 DPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELK--RTNCSYILNKYDTYSTKEYLIKEG 193

Query: 195 RLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKG 254
            L   A  ++   L    G++ +  E++     D           +V G   +   + + 
Sbjct: 194 DLSPGAVDMIGDLLNEDSGYYVSFIESL---KHDDIFAYEKRFDEIVDGMDKLPTAMYRD 250

Query: 255 LD--IRLGHRVTKITRHYIGVKVTV----EGGKTFVADAVVVAVPLGVLKARTIKFEPRL 308
           +   +    +V KI ++   V V      +   +  AD V+V      +  R IKF P L
Sbjct: 251 IQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAV--RLIKFNPPL 308

Query: 309 PDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYG--CSYFLNLHKATGHCV 366
              K  A+  +      KI +     FW +    G  S T       Y+ N +   G  V
Sbjct: 309 LPKKAHALRSVHYRSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYPNHNFTNGVGV 368

Query: 367 LVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDA-----SSPIQYLVSHWGTDANSLG 421
           ++    G  A   + +  +  A+  F  L  I         S     ++  W  D  ++G
Sbjct: 369 IIAYGIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKYAMG 428

Query: 422 SYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 473
             +  T  +     + L      ++FAGE T+    G +     +GL AA D
Sbjct: 429 GITTFTPYQFQHFSDPLTASQGRIYFAGEYTA-QAHGWIDSTIKSGLRAARD 479

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662

 Score =  304 bits (779), Expect = 3e-96
 Identities = 139/568 (24%), Positives = 224/568 (39%), Gaps = 105/568 (18%)

Query: 16  CYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG--------GRV 67
            Y         ++  VI+IG+G++G+AAAR L      V LLE+RDRVG        G  
Sbjct: 95  IYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNY 154

Query: 68  HTDYSFGFPVDLGASWLHGVCQENPL--------APVISRLGLPL-----------YRTS 108
             D        LG + +  V ++  +         P+    G  +           +   
Sbjct: 155 VADLGAMVVTGLGGNPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRL 214

Query: 109 GDNSVLYDHDLESRVLKTVVVSLIQA---------------------------------- 134
            + +    H L+  VL    VSL QA                                  
Sbjct: 215 LEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELL 274

Query: 135 -----------NLCYALFDMDGNQVPQELVT-KVGEAFESILKETDKVREEHDEDMSI-- 180
                       L     +    + P+++    + ++    L    K  +E  E      
Sbjct: 275 NKMVNLKEKIKELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLE 334

Query: 181 QRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEE--LLPGGHG 238
           ++   +  +   ++ L     ++L W+   +E   A    T+SLK WD+++     G H 
Sbjct: 335 EKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHL 394

Query: 239 LMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKV------TVEGGKTFVADAVVVAV 292
            +  GY  V   LA+GLDI+L   V ++     G +V      +      +  DAV+  +
Sbjct: 395 TVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTL 454

Query: 293 PLGVLK--ARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWP-NVEFLGVVSDTS 349
           PLGVLK     ++F P LP+WK +A+  +G G  NK+++ FD+VFW  +V   G V  T+
Sbjct: 455 PLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTT 514

Query: 350 YGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD--ASSPIQ 407
                           +L+ + AG+ A  +E +SD+         LK I        P +
Sbjct: 515 ASRGELFLFWNLYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKE 574

Query: 408 YLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDN-------------LFFAGEATSM 454
            +VS W  D  + GSYSY   G S + Y+ +  P+               LFFAGE T  
Sbjct: 575 TVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIR 634

Query: 455 SYPGSVHGAFSTGLMAAEDCRMRVLERY 482
           +YP +VHGA  +GL  A     R+ +++
Sbjct: 635 NYPATVHGALLSGLREAG----RIADQF 658

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score =  280 bits (718), Expect = 4e-89
 Identities = 95/498 (19%), Positives = 162/498 (32%), Gaps = 60/498 (12%)

Query: 26  ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLH 85
             S SV+V+G G AG+ +A  L  A +KV +LE+R R GGRV T        DL      
Sbjct: 9   KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDLSGETQK 68

Query: 86  GVCQENPLAPV--------------ISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSL 131
               E     V                 LG+ +      N+  + +      L    V+ 
Sbjct: 69  CTFSEGHFYNVGATRIPQSHITLDYCRELGVEIQGFGNQNANTFVNYQSDTSLSGQSVT- 127

Query: 132 IQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRR 191
                 Y     D      EL+ K  +         D+V    D+D ++   +S   D  
Sbjct: 128 ------YRAAKADTFGYMSELLKKATDQ-----GALDQVLSREDKD-ALSEFLSDFGDLS 175

Query: 192 PELRLEGLAHKVL-----QWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVR---- 242
            + R  G + +              E    A  E I            G    M+     
Sbjct: 176 DDGRYLGSSRRGYDSEPGAGLNFGTEKKPFAMQEVIRSGIGRNFSFDFGYDQAMMMFTPV 235

Query: 243 -GYLPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAVPLG 295
            G   +       +   +I  G  VT +     GV V    G   K+  AD  +  +P  
Sbjct: 236 GGMDRIYYAFQDRIGTDNIVFGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICTIPPH 295

Query: 296 VLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVE-FLGVVSDTSYG--- 351
           ++     + +  LP     A+         K+ + + + +W   +   G  S+T      
Sbjct: 296 LVG----RLQNNLPGDVLTALKAAKPSSSGKLGIEYSRRWWETEDRIYGGASNTDKDISQ 351

Query: 352 CSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD--ASSPIQYL 409
             +  + + +    V+ Y  +G+     E ++       A  +  +I  +          
Sbjct: 352 IMFPYDHYNSDRGVVVAYYSSGKRQEAFESLTHRQRLAKAIAEGSEIHGEKYTRDISSSF 411

Query: 410 VSHWGTDANSLGSYSYDT------VGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGA 463
              W     S  +++          G +   YE+L  PVD ++FAG+  S +     HGA
Sbjct: 412 SGSWRRTKYSESAWANWAGSGGSHGGAATPEYEKLLEPVDKIYFAGDHLS-NAIAWQHGA 470

Query: 464 FSTGLMAAEDCRMRVLER 481
            ++          RV + 
Sbjct: 471 LTSARDVVTHIHERVAQE 488

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score =  288 bits (736), Expect = 2e-88
 Identities = 102/370 (27%), Positives = 159/370 (42%), Gaps = 32/370 (8%)

Query: 158 EAFESILKETDKVREEHDEDMSIQRAISIVFDRRPE--LRLEGLAHKVLQWYLCRMEGWF 215
           ++    L    K  +E  E            +  P   + L     ++L W+   +E   
Sbjct: 481 KSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFAN 540

Query: 216 AADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGV 273
           A    T+SLK WD+++     G H  +  GY  V   LA+GLDI+L   V ++     G 
Sbjct: 541 ATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGC 600

Query: 274 KV------TVEGGKTFVADAVVVAVPLGVLK--ARTIKFEPRLPDWKEAAIDDLGVGIEN 325
           +V      +      +  DAV+  +PLGVLK     ++F P LP+WK +A+  +G G  N
Sbjct: 601 EVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLN 660

Query: 326 KIIMHFDKVFWP-NVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSD 384
           K+++ FD+VFW  +V   G V  T+                +L+ + AG+ A  +E +SD
Sbjct: 661 KVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALVAGEAAGIMENISD 720

Query: 385 EAAANFAFTQLKKIL--PDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV 442
           +         LK I        P + +VS W  D  + GSYSY   G S + Y+ +  P+
Sbjct: 721 DVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPI 780

Query: 443 D-------------NLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGELDLFQ 489
                          LFFAGE T  +YP +VHGA  +GL  A     R+ +++       
Sbjct: 781 TPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAG----RIADQFLGAMYTL 836

Query: 490 PVMGEETPIS 499
           P        +
Sbjct: 837 PRQATPGVPA 846

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score =  123 bits (310), Expect = 4e-30
 Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 28/201 (13%)

Query: 16  CYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGF 75
            Y         ++  VI+IG+G++G+AAAR L      V LLE+RDRVGGRV T     +
Sbjct: 266 IYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNY 325

Query: 76  PVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQAN 135
             DLGA  + G    NP+A V  ++ + L +                             
Sbjct: 326 VADLGAMVVTG-LGGNPMAVVSKQVNMELAKIKQKC------------------------ 360

Query: 136 LCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELR 195
               L++ +G  VP+E    V + F  +L+ T  +  + D ++   + +S+       ++
Sbjct: 361 ---PLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQ 417

Query: 196 LEGLAHKVLQWYLCRMEGWFA 216
           L+    K  Q    +      
Sbjct: 418 LQEKHVKDEQIEHWKKIVKTQ 438

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score =  113 bits (284), Expect = 2e-27
 Identities = 74/474 (15%), Positives = 134/474 (28%), Gaps = 72/474 (15%)

Query: 26  ARSPSVIVIGAGMAGVAAARALHDASFK-VVLLESRDRVGGRVHTDYSFGFPVDLGASWL 84
           ++   + +IGAG AG+AA   L  A F    +LE  D VGG+ H+    G   ++GA   
Sbjct: 4   SKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIMG 63

Query: 85  HGVCQENPLAPVISRLGLPLYRTSGDNSVLY-DHDLESRVLKTVVVSLIQANLCYALFDM 143
                   +  ++ R G  +         L+ D ++       V    + A +       
Sbjct: 64  VPSYDT--IQEIMDRTGDKVDGPKLRREFLHEDGEIYVPEKDPVRGPQVMAAV------- 114

Query: 144 DGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV 203
                 Q+L   +   ++         +   D  +     ++           E      
Sbjct: 115 ------QKLGQLLATKYQGYDANGHYNKVHEDLMLPFDEFLA-------LNGCEAARDLW 161

Query: 204 LQWYLCRMEGWFAADAETISLKSWDKEELLPGGHG---LMVRGYLPVINTLAKGL--DIR 258
           +  +     G F        LK  D   ++    G       G   +   L   L     
Sbjct: 162 INPFTAFGYGHFDNVPAAYVLKYLDFVTMMSFAKGDLWTWADGTQAMFEHLNATLEHPAE 221

Query: 259 LGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAI-- 316
               +T+ITR    V +         +D +V+ VPL      +        D  E     
Sbjct: 222 RNVDITRITREDGKVHIHTTDWDR-ESDVLVLTVPLEKFLDYS------DADDDEREYFS 274

Query: 317 ----DDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPA 372
                   V             + P+     +  +       + +      H ++     
Sbjct: 275 KIIHQQYMVDACLVKEYPTISGYVPD----NMRPERLGHVMVYYHRWADDPHQIITTYLL 330

Query: 373 GQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQ----YLVSHWGTDANSLGSYSYDTV 428
                D    + E         ++         I+    Y   H  ++    G Y     
Sbjct: 331 RN-HPDYADKTQEECRQMVLDDMETFGHPVEKIIEEQTWYYFPHVSSEDYKAGWYE---- 385

Query: 429 GKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERY 482
            K   +  R      N F+AGE  S        G F      ++D    ++ R+
Sbjct: 386 -KVEGMQGR-----RNTFYAGEIMS-------FGNFDEVCHYSKD----LVTRF 422

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score =  112 bits (281), Expect = 4e-27
 Identities = 65/464 (14%), Positives = 135/464 (29%), Gaps = 87/464 (18%)

Query: 31  VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQE 90
            +V+GAG+ G+ A   L     ++++LE    +GGR       GF +  GA  +    ++
Sbjct: 3   AVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLPYKGFQLSTGALHMIPHGED 62

Query: 91  NPLAPVISRLG--LPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQV 148
            PLA ++  LG  + +  ++    +L++                       +F    +  
Sbjct: 63  GPLAHLLRILGAKVEIVNSNPKGKILWEGK---------------------IFHYRESW- 100

Query: 149 PQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYL 208
            + L  K       +L E  ++ +   E++     I         L    +      W  
Sbjct: 101 -KFLSVKEKAKALKLLAEI-RMNKLPKEEIPADEWIKEKIGENEFLLS--VLESFAGWAD 156

Query: 209 CRMEGWFAADAETISLKSWDKEE---LLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTK 265
                   A      +++  +     L+ GG   ++     +I        I     V +
Sbjct: 157 SVSLSDLTALELAKEIRAALRWGGPGLIRGGCKAVIDELERIIM--ENKGKILTRKEVVE 214

Query: 266 ITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIK--FEPRLPDWKEAAIDD----- 318
           I       KV     + +  D  +  V +      T+K              +D      
Sbjct: 215 INIE--EKKVYTRDNEEYSFDVAISNVGV----RETVKLIGRDYFDRDYLKQVDSIEPSE 268

Query: 319 ---LGVGIENKIIMHFDKVFWPNVEFLGVVSDTSY-------GCSYFLNLHKATGHCVLV 368
                + +  +  +    VF P +   G    ++        G +  +           +
Sbjct: 269 GIKFNLAVPGEPRIGNTIVFTPGLMINGFNEPSALDKSLAREGYTLIM---------AHM 319

Query: 369 YMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTV 428
            +  G + + IEK  +E         L +I P+                        +  
Sbjct: 320 ALKNGNVKKAIEKGWEE---------LLEIFPE------GEPLLAQV---YRDGNPVNRT 361

Query: 429 GKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAE 472
                    +  P++ +   G+         V G     + A E
Sbjct: 362 RAGLH----IEWPLNEVLVVGDGYRPPGGIEVDGIALGVMKALE 401

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score =  108 bits (272), Expect = 1e-25
 Identities = 76/488 (15%), Positives = 153/488 (31%), Gaps = 71/488 (14%)

Query: 28  SPSVIVIGAGMAGVAAARALH------DASFKVVLLESRDRVGGRVHTDYSFGFPVDLGA 81
              V++IG G+ G+AAA  +       +   ++ L+E+  RVGG++ T    G+ ++ G 
Sbjct: 5   KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGP 64

Query: 82  SWLHGVCQENPLAPVISRLGLP---LYRTSGDNSVLYD---HDLESRVLKTVVVSLIQAN 135
                  +      ++  LGL    +   +G + VL +   H +    +  +   +    
Sbjct: 65  DSFLERKKS--APQLVKDLGLEHLLVNNATGQSYVLVNRTLHPMPKGAVMGIPTKIAPF- 121

Query: 136 LCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELR 195
           +   LF + G         K          +      +  +D S+               
Sbjct: 122 VSTGLFSLSG---------KA-----RAAMDFILPASKTKDDQSLGEFFRRRVGDEVVEN 167

Query: 196 L-EGLAHKVLQWYLCRME------GWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVI 248
           L E L   +    + ++        ++  + +  SL    K+    G    +        
Sbjct: 168 LIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQQLTAKKQGQF 227

Query: 249 NTLAKGL--------------DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 294
            TL+ GL               +  G +VTK++       + ++ G T  AD+V+V  P 
Sbjct: 228 QTLSTGLQTLVEEIEKQLKLTKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPH 287

Query: 295 GVLKA--RTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV------EFLGVVS 346
                    +     L +    ++ ++ +G     +    +     +             
Sbjct: 288 KAAAGMLSELPAISHLKNMHSTSVANVALGFPEGSVQMEHEGTGFVISRNSDFAITACTW 347

Query: 347 DTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPI 406
                   + +        +  Y+        I  +SD    N     LKK++     P 
Sbjct: 348 TN----KKWPHAAPEGKTLLRAYVG-KAGDESIVDLSDNDIINIVLEDLKKVMNINGEPE 402

Query: 407 QYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPG-SVHGAFS 465
              V+ W     S+  Y      +  +L E L      ++  G     S+ G  +     
Sbjct: 403 MTCVTRWH---ESMPQYHVGHKQRIKELREALASAYPGVYMTG----ASFEGVGIPDCID 455

Query: 466 TGLMAAED 473
            G  A  D
Sbjct: 456 QGKAAVSD 463

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score =  109 bits (272), Expect = 1e-25
 Identities = 86/525 (16%), Positives = 172/525 (32%), Gaps = 110/525 (20%)

Query: 18  SNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPV 77
            +      + +  V VIGAG++G+AAA  L      V + E+  + GG++ +    G   
Sbjct: 3   PSAGEDKHSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIW 62

Query: 78  DLGASWLHGVCQENPLAPVISRLGLP--LYRTSGDNSVLYDHDLESRVLKTVVVSLIQAN 135
           D GA+ +     +  +  +I  LGL          N      +    +L +  + LI++N
Sbjct: 63  DEGANTMTESEGD--VTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIKSN 120

Query: 136 LCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELR 195
                             +K+    E IL +  K+ +  D   S+       F +     
Sbjct: 121 FL-------------STGSKLQMLLEPILWKNKKLSQVSDSHESVSGFFQRHFGKE---- 163

Query: 196 LEGLAHKVLQWYLCRMEGWFAADAETISLKS-----WDKEELLPGGHGLMVR-------- 242
              +   ++  ++    G    D +++S+       W+ E+         +R        
Sbjct: 164 ---VVDYLIDPFV---AGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNE 217

Query: 243 -----------------------GYLPVINTLAKGL---DIRLGHRVTKITRHYIGVK-- 274
                                  G   + + + K L   ++RL  RV +++         
Sbjct: 218 KKQGPPKTSANKKRQRGSFSFLGGMQTLTDAICKDLREDELRLNSRVLELSCSCTEDSAI 277

Query: 275 ----VTVEGG-----KTFVADAVVVAVPLGVLKARTIK------FEPRLPDWKEAAIDDL 319
               +          +    DAV++  PL  +K+  I           +P+     +  +
Sbjct: 278 DSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVDYVPLSVV 337

Query: 320 GVGIENKIIMHFDK---VFWPNVE------FLGVVSDTSYGCSYFLNLHKATGHCVLVYM 370
               + + + +  +   V  P+ E       LG +  +      F +      +    ++
Sbjct: 338 ITTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFSS----MMFPDRAPNNVYLYTTFV 393

Query: 371 PAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVG- 429
             G   R++ K S         + LK++L     P      +W     +   Y       
Sbjct: 394 G-GSRNRELAKASRTELKEIVTSDLKQLLGAEGEPTYVNHLYWS---KAFPLY---GHNY 446

Query: 430 -KSHDLYERLRIPVDNLFFAGEATSMSYPG-SVHGAFSTGLMAAE 472
               D  +++   +  LF+AG        G SV  A S+G  AA+
Sbjct: 447 DSVLDAIDKMEKNLPGLFYAG----NHRGGLSVGKALSSGCNAAD 487

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score =  106 bits (267), Expect = 5e-25
 Identities = 75/500 (15%), Positives = 140/500 (28%), Gaps = 97/500 (19%)

Query: 25  QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWL 84
           +    +V V+G G++G+A A  L       VLLES  R+GG V T    G+ V+ G +  
Sbjct: 13  RTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSF 72

Query: 85  HGVCQENPLAPVISRLGL-----PLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYA 139
                      + + L L          +    V     L  R +     + + ++    
Sbjct: 73  LDREPA--TRALAAALNLEGRIRAADPAAKRRYVYTRGRL--RSVPASPPAFLASD---- 124

Query: 140 LFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGL 199
           +  +               A   +  E    R     D S+          R        
Sbjct: 125 ILPL--------------GARLRVAGELFSRRAPEGVDESLAAFGRRHLGHR-------A 163

Query: 200 AHKVLQWYLCRMEGWFAADAETISLKS-----WDKEELLPGGHGLMVR------------ 242
              +L      +   +A D E +S+ +        E          +R            
Sbjct: 164 TQVLLDAVQTGI---YAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPA 220

Query: 243 ----GYLPVINTLAKGLD-------------IRLGHRVTKITRHYIGVKVTVEGGK---T 282
                    ++T   GL                +G RV  + R   G ++ +E       
Sbjct: 221 GTAPKLSGALSTFDGGLQVLIDALAASLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAE 280

Query: 283 FVADAVVVAVPLGVLKARTIKFEPR----LPDWKEAAIDDLGVGIENKIIMHFDK--VFW 336
                VV+A P           +      +     A I  + +G +   +   D      
Sbjct: 281 LSVAQVVLAAPAHATAKLLRPLDDALAALVAGIAYAPIAVVHLGFDAGTLPAPDGFGFLV 340

Query: 337 PNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLK 396
           P  E   ++    +  + F    +         +  G     + +  ++A A  A  +LK
Sbjct: 341 PAEEQRRMLG-AIHASTTFPFRAEGGRVLYSCMVG-GARQPGLVEQDEDALAALAREELK 398

Query: 397 KILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV---DNLFFAGEATS 453
            +    + P    V  W      +  Y    +G   +    +   +     L   G    
Sbjct: 399 ALAGVTARPSFTRVFRWP---LGIPQY---NLG-HLERVAAIDAALQRLPGLHLIG---- 447

Query: 454 MSYPG-SVHGAFSTGLMAAE 472
            +Y G  ++         A+
Sbjct: 448 NAYKGVGLNDCIRNAAQLAD 467

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score =  103 bits (258), Expect = 6e-24
 Identities = 82/490 (16%), Positives = 155/490 (31%), Gaps = 79/490 (16%)

Query: 28  SPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLH 85
           S  ++++G G+ G+AAA     A     + LLE+ +R+GG+V T    GF ++ G     
Sbjct: 4   SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERGPDSYV 63

Query: 86  GVCQENPLAPVISRLGL---PLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFD 142
                  L  +I  +GL    +   +    +L    L    +    V  I  +L   LF 
Sbjct: 64  ARKHI--LTDLIEAIGLGEKLVRNNTSQAFILDTGGL--HPIPKGAVMGIPTDL--DLFR 117

Query: 143 MDGNQVPQELVTKVGEA-FESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAH 201
                    L+T+  +     +L          ++D+ +   +              L  
Sbjct: 118 QTT------LLTEEEKQEVADLLLHPSDSLRIPEQDIPLGEYLRPRLGDA-------LVE 164

Query: 202 KVLQWYLCRMEGWFAADAETISLKS-----WDKEELLPGGHGLMVR-------------- 242
           K+++  L    G +A + + +S  +        E+        M                
Sbjct: 165 KLIEPLL---SGIYAGNIDQMSTFATYPQFVANEQKAGSLFEGMRLMRPLDQLPQTPQTT 221

Query: 243 ------------GYLPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADA 287
                       G   +I  L + L   +IRL   +  I+R     ++  + G    AD 
Sbjct: 222 IKATGQFLSLETGLESLIERLEEVLERSEIRLETPLLAISREDGRYRLKTDHG-PEYADY 280

Query: 288 VVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSD 347
           V++ +P   +     +  P     +   +          I      +      F+     
Sbjct: 281 VLLTIPHPQVV----QLLPDAHLPELEQLTTHSTATVTMIFDQQQSLPIEGTGFVVNRRA 336

Query: 348 TSY--GCSYFLNL--HKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS 403
                 C+       H A  H VL           +   SDE         L+KI     
Sbjct: 337 PYSITACTAIDQKWNHSAPDHTVLRAFVGRPGNDHLVHESDEVLQQAVLQDLEKICGRTL 396

Query: 404 SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPG-SVHG 462
            P Q ++S      + L +Y+     +   + E +      ++ AG    ++Y G  +  
Sbjct: 397 EPKQVIISRL---MDGLPAYTVGHADRIQRVREEVLAQYPGIYLAG----LAYDGVGLPD 449

Query: 463 AFSTGLMAAE 472
             ++     E
Sbjct: 450 CVASAKTMIE 459

>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 181

 Score = 90.3 bits (224), Expect = 2e-21
 Identities = 22/120 (18%), Positives = 37/120 (30%), Gaps = 4/120 (3%)

Query: 357 NLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASS---PIQYLVSHW 413
            +    G  VL        A   +   D     +A   L+ +                 W
Sbjct: 29  PVPGTQGGVVLAAYSWSDDAARWDSFDDAERYGYALENLQSVHGRRIEVFYTGAGQTQSW 88

Query: 414 GTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 473
             D  + G  +  T  +    +  +  P   ++FAGE  S+     + GA  T + AA  
Sbjct: 89  LRDPYACGEAAVYTPHQMTAFHLDVVRPEGPVYFAGEHVSL-KHAWIEGAVETAVRAAIA 147

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 91.9 bits (227), Expect = 5e-20
 Identities = 60/466 (12%), Positives = 118/466 (25%), Gaps = 46/466 (9%)

Query: 28  SPSVIVIGAGMAGVAAARALHDASFK-VVLLESRDRVGGRVHTDYSF-GFPVDLGASWLH 85
           +P +++IGAG  G+ AA  L +  +K   L E  D  GG   +     GF  DLG   + 
Sbjct: 9   TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIF 68

Query: 86  GVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDG 145
              Q      V+            ++ V           +  +  L              
Sbjct: 69  SHYQY--FDDVMDWAVQGWNVLQRESWVWVRGRWVPYPFQNNIHRL-------------- 112

Query: 146 NQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHK--- 202
              P++   +  +        T      + E+   ++    + D         +      
Sbjct: 113 ---PEQDRKRCLDELVRSHARTYTEPPNNFEESFTRQFGEGIADIFMRPYNFKVWAVPPC 169

Query: 203 --VLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLP--VINTLAKGLD-- 256
               +W   R+             ++ D     P       +      +   + + L   
Sbjct: 170 LMSTEWVEERVAPVDLERIRRNIQENRDDLGWGPNATFRFPQRGGTGIIYQAIKEKLPSE 229

Query: 257 -IRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAA 315
            +        I        +T   G+    D ++  VP   L   T     +  D   A 
Sbjct: 230 KLTFNSGFQAIAIDADAKTITFSNGEVVSYDYLISTVPFDNLLRMTKGTGFKGYDEWPAI 289

Query: 316 IDDL--------GVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVL 367
            D +        G+G++     H     W            +   S +   +   GH  L
Sbjct: 290 ADKMVYSSTNVIGIGVKGTPPPHLKTACWLYFPEDTSPFYRATVFSNYSKYNVPEGHWSL 349

Query: 368 VYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDT 427
           +   +   ++           +     L   L      +     +               
Sbjct: 350 MLEVSE--SKYKPVNHSTLIEDCIVGCLASNLLLPEDLLVSKWHYRIEKGYPT--PFIGR 405

Query: 428 VGKSHDLYERLRIPVDNLFFAGEATSMSYPGSV-HGAFSTGLMAAE 472
                     L      ++  G   +  Y       +F  G+ A +
Sbjct: 406 NNLLEKAQPELMSR--CIYSRGRFGAWRYEVGNQDHSFMQGVEAID 449

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477

 Score = 85.1 bits (210), Expect = 7e-18
 Identities = 77/486 (15%), Positives = 138/486 (28%), Gaps = 60/486 (12%)

Query: 28  SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRVHTD-YSFGFPVDLGASWL 84
             +V+V+G G++G+AA+  L  A    KVVL+ES +R+GG + +     G   +LG   +
Sbjct: 2   GRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGI 61

Query: 85  HGVCQENP-LAPVISRLGL--------PLYRTSGDNSVLYD---HDLESRVLK--TVVVS 130
                       ++S LGL          +  + +  +      H L + +         
Sbjct: 62  RPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPTGLRGLLRPSPP 121

Query: 131 LIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDR 190
             +      L ++           +  E  E++     +        +++      VF  
Sbjct: 122 FSKPLFWAGLREL--------TKPRGKEPDETVHSFAQRRLGPEVASLAMDSLCRGVFAG 173

Query: 191 RPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVR------GY 244
                        L                           L+               G 
Sbjct: 174 NSRELSIRSCFPSLFQAEQTHRSILLGLLLGAGRTPQPDSALIRQALAERWSQWSLRGGL 233

Query: 245 LPVINTLAK-----GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKA 299
             +   L       G+ +  G  V  ++    G         +  AD V+ A+P  VL  
Sbjct: 234 EMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLRDSSLEADHVISAIPASVLSE 293

Query: 300 RTIKFEPR----LPDWKEAAIDDLGVGIENKIIMHFDKVFW----PNVEFLGVVSDTSYG 351
                       L      ++  + +  +   +             +   LG+V D+   
Sbjct: 294 LLPAEAAPLARALSAITAVSVAVVNLQYQGAHLPVQGFGHLVPSSEDPGVLGIVYDS--- 350

Query: 352 CSYFLNLHKATGHCVLVYMPAGQLARDIEK----MSDEAAANFAFTQLKKILPDASSPIQ 407
              F     +     +  M  G   + +E     +S E     A       L     P  
Sbjct: 351 -VAFPEQDGSPPGLRVTVMLGGSWLQTLEASGCVLSQELFQQRAQEAAATQLGLKEMPSH 409

Query: 408 YLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPG-SVHGAFST 466
            LV       N +  Y+     K     + L      L  AG     SY G +V+    +
Sbjct: 410 CLVHLHK---NCIPQYTLGHWQKLESARQFLTAHRLPLTLAG----ASYEGVAVNDCIES 462

Query: 467 GLMAAE 472
           G  AA 
Sbjct: 463 GRQAAV 468

>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 130

 Score = 78.1 bits (192), Expect = 2e-17
 Identities = 18/104 (17%), Positives = 30/104 (28%), Gaps = 7/104 (6%)

Query: 279 GGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPN 338
             +T+  D  +V +P   L  R +K  P     K  A+ +       K+++ F + +W  
Sbjct: 2   ATQTWTGDLAIVTIPFSSL--RFVKVTPPFSYKKRRAVIETHYDQATKVLLEFSRRWWEF 59

Query: 339 VE-FLGVVSDT----SYGCSYFLNLHKATGHCVLVYMPAGQLAR 377
            E       D      Y          A     L          
Sbjct: 60  TEADWKRELDAIAPGLYDYYQQWGEDDAEAALALPQSVRNLPTG 103

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376

 Score = 83.1 bits (204), Expect = 2e-17
 Identities = 54/335 (16%), Positives = 98/335 (29%), Gaps = 68/335 (20%)

Query: 26  ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR-DRVGGRVHTDY----------SFG 74
                ++++GAG+AG+ A   L  A   V +LE+  +RVGGR+ T +             
Sbjct: 42  GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPA 101

Query: 75  FPVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQA 134
              + GA  L           +I +LGL        +      + ++ V      S    
Sbjct: 102 QYAEAGAMRLPSFHPL--TLALIDKLGLKRRLFFNVDIDPQTGNQDAPVPPVFYKSFKDG 159

Query: 135 NLCY----------------------------ALFDMDGNQVPQELVTKVGEAFESILKE 166
                                           A +  D + + +       E   ++   
Sbjct: 160 KTWTNGAPSPEFKEPDKRNHTWIRTNREQVRRAQYATDPSSINEGFHLTGCETRLTVSDM 219

Query: 167 TDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQW-------YLCRMEGWFAADA 219
            ++  E   +  S+++      ++  +  L G A  V  +       +L     +     
Sbjct: 220 VNQALEPVRDYYSVKQDDGTRVNKPFKEWLAGWADVVRDFDGYSMGRFLREYAEFSDEAV 279

Query: 220 ETISLKSWDKEELLPGGHGLMVR----------------GYLPVINTLAKGL--DIRLGH 261
           E I     +    L                         G   +  TLAK L   I +G 
Sbjct: 280 EAIGT-IENMTSRLHLAFFHSFLGRSDIDPRATYWEIEGGSRMLPETLAKDLRDQIVMGQ 338

Query: 262 RVTKITRHYIGVKVTVEGGKTFVADAVVV-AVPLG 295
           R+ ++  +  G              AV +  VP G
Sbjct: 339 RMVRLEYYDPGRDGHHGELTGPGGPAVAIQTVPEG 373

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score = 75.9 bits (187), Expect = 6e-15
 Identities = 69/483 (14%), Positives = 131/483 (27%), Gaps = 105/483 (21%)

Query: 31  VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQE 90
            +VIGAG+ G+ +A  L  A  +V + E     GGR       GF +  GA  +      
Sbjct: 3   TVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKGFQLSSGAFHMLPNGPG 62

Query: 91  NPLAPVISRLG--LPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQV 148
            PLA  +  +   + + R+      +         +K                       
Sbjct: 63  GPLACFLKEVEASVNIVRSEMTTVRVPLKKGNPDYVK----------------------- 99

Query: 149 PQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQ-WY 207
                      F S+L   D+++            +S   +R     L+      +   +
Sbjct: 100 --GFKDISFNDFPSLLSYKDRMKIALL-------IVSTRKNRPSGSSLQAWIKSQVSDEW 150

Query: 208 LCRMEGWF--------AADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGL---- 255
           L +    F        + +     +    +     GG G+   G   +I+ L   +    
Sbjct: 151 LIKFADSFCGWALSLKSDEVPVEEVFEIIENMYRFGGTGIPEGGCKGIIDALETVISANG 210

Query: 256 -DIRLGHRVTKIT---RHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDW 311
             I  G  V+KI        G+       +   AD V+  +  G      +  E    + 
Sbjct: 211 GKIHTGQEVSKILIENGKAAGIIA---DDRIHDADLVISNL--GHAATAVLCSEALSKEA 265

Query: 312 KEAAIDD-----------LGVGIENKIIMHFDKVFWPNVEFLGVVSDTSY--------GC 352
             A               + +  +  ++ H   +  P    +  V++ +         G 
Sbjct: 266 DAAYFKMVGTLQPSAGIKICLAADEPLVGHTGVLLTPYTRRINGVNEVTQADPELAPPGK 325

Query: 353 SYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSH 412
                           Y+    +         E+        LK+I P     +  L+  
Sbjct: 326 H---LTM------CHQYVAPENVKN------LESEIEMGLEDLKEIFPGKRYEV-LLIQS 369

Query: 413 WGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGS---VHGAFSTGLM 469
           +  +     + S    G           P   L+  G+            V G     + 
Sbjct: 370 YHDEWPVNRAASGTDPG--------NETPFSGLYVVGDGA---KGKGGIEVEGVALGVMS 418

Query: 470 AAE 472
             E
Sbjct: 419 VME 421

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 71.8 bits (175), Expect = 2e-13
 Identities = 68/478 (14%), Positives = 133/478 (27%), Gaps = 53/478 (11%)

Query: 31  VIVIGAGMAGVAAARALHDAS-FKVVLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVC 88
           V+VIGAG  G+ AA+ L+       ++++S +  GG   TD +  GF  D+G    H + 
Sbjct: 13  VLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGG---HVIF 69

Query: 89  QENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVL-KTVVVSLIQANLCYALFDMDGNQ 147
                          L          Y H   S V  +   V     N    L   +  +
Sbjct: 70  SHY---KYFDDC---LDEALPKEDDWYTHQRISYVRCQGQWVPYPFQNNISMLPKEEQVK 123

Query: 148 VPQELVTKVGEAFESILKET---DKVREEHDE---DMSIQRAISIVFDRRPELRLEGLAH 201
               ++    EA  +  K     + +         D+ ++     V+             
Sbjct: 124 CIDGMIDAALEARVANTKPKTFDEWIVRMMGTGIADLFMRPYNFKVWAVPTTKMQCAWLG 183

Query: 202 KVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGH 261
           + +     +         +T      +     P   G              +        
Sbjct: 184 ERVAAPNLKAVTTNVILGKTAGNWGPNATFRFPARGGTGGIWIAVANTLPKEKTRFGEKG 243

Query: 262 RVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKE---AAIDD 318
           +VTK+  +     VT++ G T     +V  + +  L A  +  +  +   K+   ++   
Sbjct: 244 KVTKVNAN--NKTVTLQDGTTIGYKKLVSTMAVDFL-AEAMNDQELVGLTKQLFYSSTHV 300

Query: 319 LGVGIENKIIMHFDKVFW-----PNVEFLGVVSDTSY-------GCSYFLNLHKATGHCV 366
           +GVG+            W      N  F      ++Y         +    +  A G   
Sbjct: 301 IGVGVRGSRPERIGDKCWLYFPEDNCPFYRATIFSNYSPYNQPEASAALPTMQLADGSRP 360

Query: 367 LVYMPAGQLARDIE---------KMSDEAAANFAFTQLKKI--LPDASSPIQYLVSHWGT 415
                       I           ++ E         L     L      +      +  
Sbjct: 361 QSTEAKEGPYWSIMLEVSESSMKPVNQETILADCIQGLVNTEMLKPTDEIVSTYHRRF-D 419

Query: 416 DANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGS-VHGAFSTGLMAAE 472
                   + +  G    +  +L+    +++  G   S  Y       +F  G+ A +
Sbjct: 420 HGYPT--PTLEREGTLTQILPKLQDK--DIWSRGRFGSWRYEVGNQDHSFMLGVEAVD 473

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342

 Score = 63.2 bits (152), Expect = 4e-11
 Identities = 33/223 (14%), Positives = 71/223 (31%), Gaps = 17/223 (7%)

Query: 256 DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAA 315
           ++   HRVT+I       +V+ + G     D +V+ +P+  +          + + +   
Sbjct: 125 EVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMPVPEILQLQGDITTLISECQRQQ 184

Query: 316 IDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHC------VLVY 369
           ++ +       + + ++     +V + G    ++    +    +K            LV 
Sbjct: 185 LEAVSYSSRYALGLFYEAGTKIDVPWAGQYITSNPCIRFVSIDNKKRNIESSEIGPSLVI 244

Query: 370 MPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVG 429
                      + S E      F QL+ ILP    PI      W         +S  T  
Sbjct: 245 HTTVPFGVTYLEHSIEDVQELVFQQLENILPGLPQPIATKCQKWR--------HSQVTNA 296

Query: 430 KSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAE 472
            ++   +        L   G+  +     +  G  ++ L   E
Sbjct: 297 AANCPGQMTLHHKPFLACGGDGFT---QSNFDGCITSALCVLE 336

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342

 Score = 51.7 bits (122), Expect = 3e-07
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 29 PSVIVIGAGMAGVAAARALHDA---SFKVVLLESRDRVGGRVHT---DYSFGFPVDLGAS 82
            V+++GAGM G   A  L         + + +  D  GGR+ T    ++     DLGA 
Sbjct: 2  AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQ 61

Query: 83 WLHGVCQENP 92
          ++        
Sbjct: 62 YITCTPHYAK 71

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 57.0 bits (137), Expect = 5e-09
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPV-DLGASWLH 85
           I++G+G+ G   A  L   + KV+++E R+ +GG  +T+   G  +   GA   H
Sbjct: 4  YIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFH 59

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Length = 433

 Score = 52.9 bits (126), Expect = 1e-07
 Identities = 38/283 (13%), Positives = 76/283 (26%), Gaps = 30/283 (10%)

Query: 31  VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQE 90
           VIV+G G+     +  +     KV+ ++     GG   +                     
Sbjct: 9   VIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETM 68

Query: 91  NPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVP- 149
                    L       +G    L    L + V + +   +++ +  Y        +VP 
Sbjct: 69  GRGRDWNVDLIPKFLMANGQ---LVKMLLYTEVTRYLDFKVVEGSFVYK--GGKIYKVPS 123

Query: 150 ---QELVTKVGEAFE--SILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVL 204
              + L + +   FE     K    V    + D      +        ++  +    + +
Sbjct: 124 TETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDV 183

Query: 205 QWYLCRMEGWFAAD-------AETI-----SLKSWDKEELLP-----GGHGLMVRGYLPV 247
             +       +  D        ETI       +S  +    P      G G + +G+  +
Sbjct: 184 IDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFARL 243

Query: 248 INTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVV 290
                 G    L   V  I      V      G+      ++ 
Sbjct: 244 SA--IYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLIC 284

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 1e-07
 Identities = 75/498 (15%), Positives = 142/498 (28%), Gaps = 168/498 (33%)

Query: 55  VLLESRDR-----VGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY---- 105
            LL  ++      V   +  +Y           +L    +     P +      +Y    
Sbjct: 70  TLLSKQEEMVQKFVEEVLRINYK----------FLMSPIKTEQRQPSMMT---RMYIEQR 116

Query: 106 -RTSGDNSVLYDHDLESRV-----LKTVVVSLIQA-NLCYALFDMDG--NQVPQELVTKV 156
            R   DN V   +++ SR+     L+  ++ L  A N+   +  + G        +   V
Sbjct: 117 DRLYNDNQVFAKYNV-SRLQPYLKLRQALLELRPAKNV--LIDGVLGSGKTW---VALDV 170

Query: 157 GEAFESILKETDKVREEHDEDMSIQRA-------ISIVFDRRPELRLE---GLAHKVLQW 206
                                  +Q         +++     PE  LE    L +++   
Sbjct: 171 -------------CL-----SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 207 YLCRMEGWFAADAETISLKSWDKEELL--PGGHGLMVRGYL-PVIN-TLAKGLDIR---L 259
           +  R +          S+++  +  L   P  + L+V   L  V N       ++    L
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV---LLNVQNAKAWNAFNLSCKIL 269

Query: 260 GHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG-------VLKARTIKFEPRLPDWK 312
              +T  TR +  V   +    T        ++ L        +LK    + +  LP  +
Sbjct: 270 ---LT--TR-FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ-DLP--R 320

Query: 313 EA-AIDDLGVGI--ENKIIM--HFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVL 367
           E    +   + I  E+       +D   W +V       D          L       + 
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWD--NWKHVNC-----D---------KLTTIIESSLN 364

Query: 368 VYMPAGQLARDIEKMSDEAAANFAFTQLKKILP-DASSPIQYLVSHWGTD--------AN 418
           V  PA     +  KM         F +L  + P  A  P   L   W            N
Sbjct: 365 VLEPA-----EYRKM---------FDRLS-VFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409

Query: 419 SLGSYS------YDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAE 472
            L  YS       ++      +Y  L++ ++N +            ++H           
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEY------------ALH----------- 446

Query: 473 DCRMRVLERYGELDLFQP 490
                +++ Y     F  
Sbjct: 447 ---RSIVDHYNIPKTFDS 461

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 1e-07
 Identities = 66/501 (13%), Positives = 141/501 (28%), Gaps = 168/501 (33%)

Query: 10  QLRRALCYSNNAGKGQARSPSVIVIGAGMAG----VAAARALHDASFKVVLLESRDRVGG 65
           +LR+AL         + R    ++I  G+ G      A         +            
Sbjct: 139 KLRQALL--------ELRPAKNVLI-DGVLGSGKTWVALDVCLSYKVQCK---------- 179

Query: 66  RVHTDYSFGFPVDLGASWLH-GVCQE-----NPLAPVISRLGLPLYRTSGDNSVLYDHDL 119
                    F +     WL+   C         L  ++ ++  P + +  D+S      +
Sbjct: 180 -------MDFKI----FWLNLKNCNSPETVLEMLQKLLYQID-PNWTSRSDHSSNIKLRI 227

Query: 120 ESRVLKTVVVSLI-QANLCYALFDMDGNQVPQELVTKVGEAFE---SILKETDKVREEHD 175
            S  ++  +  L+        L  +   Q  +        AF     IL  T   R    
Sbjct: 228 HS--IQAELRRLLKSKPYENCLLVLLNVQNAKAW-----NAFNLSCKILLTT---R---- 273

Query: 176 EDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWD-KEELLP 234
               +   +S        + L+  +                 + +++ LK  D + + LP
Sbjct: 274 -FKQVTDFLS--AATTTHISLDHHS-----------MTLTPDEVKSLLLKYLDCRPQDLP 319

Query: 235 ----GGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVV 290
                 +          ++ +A+ +   L        +H    K+T            ++
Sbjct: 320 REVLTTNPR-------RLSIIAESIRDGLAT--WDNWKHVNCDKLTT-----------II 359

Query: 291 AVPLGVLKARTIK--FEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDT 348
              L VL+    +  F+         ++      I   ++     + W +V    V+   
Sbjct: 360 ESSLNVLEPAEYRKMFD-------RLSVFPPSAHIPTILLS----LIWFDVIKSDVMVVV 408

Query: 349 SYGCSYFL-NLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQ 407
           +    Y L            + +P+  L     K+ +E A +      + I+        
Sbjct: 409 NKLHKYSLVEKQPKES---TISIPSIYL-ELKVKLENEYALH------RSIV-------- 450

Query: 408 YLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTG 467
                          Y+   + K+ D  + +   +D  F+       S+ G  H      
Sbjct: 451 -------------DHYN---IPKTFDSDDLIPPYLDQYFY-------SHIGH-H------ 480

Query: 468 LMAAEDCRMRVLERYGELDLF 488
                   ++ +E    + LF
Sbjct: 481 --------LKNIEHPERMTLF 493

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 52.0 bits (124), Expect = 3e-07
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSF---GFPVDLGASWLH 85
          ++++GAG +G    R L +   +V +++ RD +GG  +              G    H
Sbjct: 6  ILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFH 63

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 50.9 bits (121), Expect = 5e-07
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 31 VIVIGAGMAG-VAAARALHDASFKVVLLESRDRVGGRVHT--DYSFGFPV-DLGASWLHG 86
          + V+G+G  G   A R       +V++LE R  +GG  ++  +   G  V   GA   H 
Sbjct: 10 LFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQTGIEVHKYGAHLFHT 69

Query: 87 VCQE 90
            + 
Sbjct: 70 SNKR 73

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455

 Score = 51.0 bits (123), Expect = 6e-07
 Identities = 19/40 (47%), Positives = 25/40 (62%)

Query: 253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAV 292
           +GL IR G RVT +     G +V +EGG+   AD V+VAV
Sbjct: 221 QGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAV 260

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 50.5 bits (120), Expect = 7e-07
 Identities = 11/39 (28%), Positives = 22/39 (56%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69
           +++GAG AG   A  L  +  +V++++ R  +GG  + 
Sbjct: 32 YLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYD 70

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* Length = 721

 Score = 50.3 bits (118), Expect = 1e-06
 Identities = 34/290 (11%), Positives = 66/290 (22%), Gaps = 59/290 (20%)

Query: 262 RVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGV 321
            +   +         +      +       V             P        AI  L +
Sbjct: 417 PIVSRSGFEHAASQNLGDAGLGLETHTYNQVYP---PLLLSDSSPAANARIVTAIGQLHM 473

Query: 322 GIENKIIMHFDKVFW--------PNVEFLGVVSDTSYGCSYFL-----NLHKATGHCVLV 368
              +K+                        VVSD+    SY +        +A  +  L+
Sbjct: 474 ARSSKVFATVKTAALDQPWVPQWRGEPIKAVVSDSGLAASYVVPSPIVEDGQAPEYSSLL 533

Query: 369 -----------YMPAGQLARDIEKMSDEAAANFAFTQLKKILPD---------------- 401
                            L           A     T + +                    
Sbjct: 534 ASYTWEDDSTRLRHDFGLYPQNPATETGTADGMYRTMVNRAYRYVKYAGASNAQPWWFYQ 593

Query: 402 ---ASSPIQYLVSHWGTD-------ANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEA 451
               +      V  W T+        +  G +    +   +  +       +  F A ++
Sbjct: 594 LLAEARTADRFVFDWTTNKTAGGFKLDMTGDHHQSNLCFRYHTHALAASLDNRFFIASDS 653

Query: 452 TSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGELDLFQPVMGEETPISVP 501
            S    G + GAF + L A       ++ R    D+   +  E  P+ + 
Sbjct: 654 YS-HLGGWLEGAFMSALNAVAG----LIVRANRGDV-SALSTEARPLVIG 697

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* Length = 721

 Score = 42.2 bits (97), Expect = 3e-04
 Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 8/83 (9%)

Query: 18  SNNAGKGQARSPSVIVIGAGMAGVAAARAL--------HDASFKVVLLESRDRVGGRVHT 69
           +   G+  A +  + ++G G  G+AA   L          +   V + E+          
Sbjct: 46  AAPLGRLPAGNYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRP 105

Query: 70  DYSFGFPVDLGASWLHGVCQENP 92
                    L A  +      N 
Sbjct: 106 GIKAIKVRGLKAGRVSAALVHNG 128

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499

 Score = 49.9 bits (120), Expect = 1e-06
 Identities = 10/40 (25%), Positives = 19/40 (47%)

Query: 253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAV 292
           +G+ +    R   +TR   GV VT+  G+T      ++ +
Sbjct: 236 RGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTI 275

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65
          V+VIG G +G++A   L  +    V+L++    GG
Sbjct: 6  VVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGG 40

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 8/58 (13%)

Query: 254 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDW 311
            L +    RV +++     ++V    G+ ++A AV+ A   G         E   P++
Sbjct: 90  ALPVLRPIRVQRVSHFGERLRVVARDGRQWLARAVISAT--GTWG------EAYTPEY 139

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447

 Score = 48.8 bits (116), Expect = 3e-06
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 30 SVIVIGAGMAGVAAARALHD--ASFKVVLLESRDRVGG 65
           + +IGAG +G+  A+AL    A  +V L E R   GG
Sbjct: 8  KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG 45

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 14/46 (30%), Positives = 19/46 (41%)

Query: 19 NNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64
           N  K   ++    V G G AG+ AA AL    + V L E    + 
Sbjct: 2  ANVNKTPGKTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELR 47

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407

 Score = 47.6 bits (114), Expect = 5e-06
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 17 YSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64
          +S+            IVIGAG+ G++AA AL  +     + E+   + 
Sbjct: 12 HSSGENLYFQGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIK 59

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 19/37 (51%), Positives = 26/37 (70%)

Query: 31  VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67
           V+V+GAG +G+ AARAL    + VVL E+   +GGRV
Sbjct: 394 VLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRV 430

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 47.7 bits (114), Expect = 8e-06
 Identities = 13/37 (35%), Positives = 26/37 (70%)

Query: 31  VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67
           V+++GAG +G  AAR L ++ + V L ++ +++GG +
Sbjct: 392 VLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHL 428

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344

 Score = 46.7 bits (110), Expect = 9e-06
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 13/88 (14%)

Query: 31  VIVIGAGMAGVAAARAL--HDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVC 88
           ++++GAG  G++AA  L       ++ ++E+    GG             LG      + 
Sbjct: 82  IVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAW----------LGGQLFSAMV 131

Query: 89  QENPLAPVISRLGLPLYRTSGDNSVLYD 116
              P    +  +G+P Y   GD  V+  
Sbjct: 132 MRKPADVFLDEVGVP-YEDEGDYVVVKH 158

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571

 Score = 47.4 bits (113), Expect = 9e-06
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 31  VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFG 74
           V+V+G+G AG +AA +  D+  KV+L+E    +GG  +   + G
Sbjct: 129 VVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGG--NAKLAAG 170

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572

 Score = 47.4 bits (113), Expect = 9e-06
 Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 2/44 (4%)

Query: 31  VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFG 74
           V++IG+G AG+AAA +  DA  KV+LLE     GG  +T  + G
Sbjct: 129 VVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGG--NTKLAAG 170

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 47.4 bits (113), Expect = 9e-06
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 31  VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGF 75
           V+V+GAG AG  A+ A   A   V+L++     GG  ++  S G 
Sbjct: 124 VLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGG--NSMISAGG 166

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Length = 965

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 31  VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVD--LGASWLHGVC 88
           V+V+GAG AG+AAAR    +  +V+LL+ R   GG      + G  +D    ++W+  V 
Sbjct: 131 VLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGT--LLDTAGEQIDGMDSSAWIEQVT 188

Query: 89  QE 90
            E
Sbjct: 189 SE 190

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 14/48 (29%), Positives = 20/48 (41%)

Query: 18 SNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65
          +         S  V+V+GAG+AG+ A          V   E+   VGG
Sbjct: 11 TAPDATTGTTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGG 58

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 30  SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65
           ++ V+GAG AG+A A        +V L ++   +GG
Sbjct: 375 NLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGG 410

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 14/41 (34%), Positives = 26/41 (63%)

Query: 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65
          ++ +   +VIGAG+ G+  A  ++ A  KV+ +E+ + VGG
Sbjct: 6  KSPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGG 46

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 253 KGLDIRLGHRVTKITRHYIGVKVTVE---GGKTFVADAVVVAV 292
           +GL I LG RVT        V V      G K+   D ++VAV
Sbjct: 234 QGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAV 276

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 15/67 (22%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG----------RV----HTDYSFGFP 76
          V+V+GAG +G+ A   L +    V ++E+   VGG          R        Y + F 
Sbjct: 19 VLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIE-YCYSFS 77

Query: 77 VDLGASW 83
           ++   W
Sbjct: 78 EEVLQEW 84

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65
          V+V G G+AGVAA+     A   V++LE     GG
Sbjct: 44 VVVAGYGIAGVAASIEAARAGADVLVLERTSGWGG 78

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455

 Score = 45.6 bits (109), Expect = 3e-05
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 7/66 (10%)

Query: 231 ELLPGGHGLMVRGYLPVINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGG---KTFVAD 286
           E+L G    M      +   L K G+++              GV VT E     KT  AD
Sbjct: 204 EILSGFEKQMAA---IIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDAD 260

Query: 287 AVVVAV 292
            V+V V
Sbjct: 261 YVLVTV 266

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 4/39 (10%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLES----RDRVGG 65
          +IVIG G  G   A  +     +V+LLE     R ++G 
Sbjct: 10 LIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGE 48

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284

 Score = 44.7 bits (105), Expect = 4e-05
 Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 12/95 (12%)

Query: 31  VIVIGAGMAGVAAARAL-HDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQ 89
           V+V+GAG AG++AA  +  + + +V ++E     GG             LG      +  
Sbjct: 42  VVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAW----------LGGQLFSAMIV 91

Query: 90  ENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVL 124
             P    +  +G+  Y       V+    L +  +
Sbjct: 92  RKPAHLFLDEIGVA-YDEQDTYVVVKHAALFTSTI 125

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 44.4 bits (104), Expect = 4e-05
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 13/88 (14%)

Query: 31  VIVIGAGMAGVAAARAL--HDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVC 88
           VI++GAG +G++AA  +  +    KV ++ES    GG             LG      + 
Sbjct: 68  VIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGG----------SWLGGQLFSAMV 117

Query: 89  QENPLAPVISRLGLPLYRTSGDNSVLYD 116
              P    +  L +P Y   GD  V+  
Sbjct: 118 MRKPAHLFLQELEIP-YEDEGDYVVVKH 144

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLE 58
           +  + V+G  ++G+ AA  L DA   V + E
Sbjct: 4  TTDRIAVVGGSISGLTAALMLRDAGVDVDVYE 35

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score = 44.4 bits (105), Expect = 6e-05
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65
          V +IGAG AG+  A  L D     V++  +  VG 
Sbjct: 7  VAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGH 41

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491

 Score = 44.5 bits (106), Expect = 6e-05
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)

Query: 253 KGLDIRLGHRVTKITRHYIGVKVTVEGGK-----TFVADAVVVAV 292
           +G+D +LG +VT   +   G KVT E  K     T  A+ V++A 
Sbjct: 252 QGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIAT 296

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 44.6 bits (105), Expect = 6e-05
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 4/38 (10%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLES----RDRVG 64
          V +IG G AG  A   LH     V + E     R RVG
Sbjct: 26 VAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVG 63

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470

 Score = 44.0 bits (105), Expect = 7e-05
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 5/45 (11%)

Query: 253 KGLDIRLGHRVTKITRHYIGVKVTVEGGK-----TFVADAVVVAV 292
           +G+  +L  +V  +     GVK+TVE           AD V+V+ 
Sbjct: 231 QGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA 275

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482

 Score = 44.1 bits (105), Expect = 8e-05
 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 8/67 (11%)

Query: 231 ELLPGGHGLMVRGYLPVINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGK----TFVA 285
            L+ G    +V+              +I +  +   +     GV VT EG          
Sbjct: 219 GLMQGADRDLVK---VWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRY 275

Query: 286 DAVVVAV 292
           DAV+VA 
Sbjct: 276 DAVLVAA 282

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464

 Score = 43.7 bits (104), Expect = 9e-05
 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 5/45 (11%)

Query: 253 KGLDIRLGHRVTKITRHYIGVKVTVEGGK-----TFVADAVVVAV 292
           +G+ +R   +     +   G+ V +E  +       V D V+VAV
Sbjct: 223 EGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAV 267

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 15/89 (16%), Positives = 27/89 (30%)

Query: 31  VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQE 90
           V+++G+G  G   AR L  A +KV + +  +   G     +                  +
Sbjct: 49  VVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQ 108

Query: 91  NPLAPVISRLGLPLYRTSGDNSVLYDHDL 119
             L  V   +   +  T    S       
Sbjct: 109 GQLMSVSVPVNTLVVDTLSPTSWQASTFF 137

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 28 SPSVIVIGAGMAGVAAARALHDAS------FKVVLLESRDRVGG 65
          +  + ++GAG +G+A  RA   A        ++V  E +   GG
Sbjct: 2  ATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGG 45

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 5/47 (10%)

Query: 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD-----RVGGRVH 68
             +V +IG G  G+  A+ L      V + E  +       GG + 
Sbjct: 25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLD 71

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Length = 540

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 18/74 (24%), Positives = 24/74 (32%), Gaps = 16/74 (21%)

Query: 25 QARSPSVIVIGAGMAGV-AAARALHDASFKVVLLESRDRVGG----------RV----HT 69
             +   +VIGAG  G+ A  +  H+     V  +  D  GG                H 
Sbjct: 5  TTHTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHL 64

Query: 70 DYSFGFPVDLGASW 83
           Y F F  DL    
Sbjct: 65 -YRFSFDRDLLQES 77

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* Length = 443

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 16/45 (35%), Positives = 19/45 (42%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGF 75
          V V+GAG+AG  AA  L      V L E R +     H    F  
Sbjct: 4  VNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTPAHGTDRFAE 48

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)

Query: 253 KGLDIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAV 292
            G+ I    +V  I      V VTV      +   A+ V+ A+
Sbjct: 225 LGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAI 267

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 250 TLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGK----TFVADAVVVAV 292
            LAK   +      +V   T +   V + VEG      T   +A++V+V
Sbjct: 224 ALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSV 272

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430

 Score = 42.6 bits (99), Expect = 2e-04
 Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 7/101 (6%)

Query: 23  KGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR---VGGRVHTDYSFGFPVDL 79
           +G      + ++GAG AG+     L      V +   R      G R+  +      V +
Sbjct: 17  RGSHMKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRL-LNTVAHNAVTV 75

Query: 80  GASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLE 120
                  V +               Y   G   + +  DL+
Sbjct: 76  QREVALDVNEWPSEEFGYFGHY---YYVGGPQPMRFYGDLK 113

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDR 62
          V++IG G AG +AA  L     K++L++S+  
Sbjct: 9  VLIIGGGFAGSSAAYQLSRRGLKILLVDSKPW 40

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 252 AKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDW 311
            +G+ +     V  +      + + ++ G+    D +V AV  G+        EP + + 
Sbjct: 238 REGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAV--GL--------EPNV-EL 286

Query: 312 KEAA---IDDLGVGI 323
            +     ID    G 
Sbjct: 287 AKTGGLEIDSDFGGF 301

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 493

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 31  VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR--VHTDYSFGFPVDLGASWLHGVC 88
           V +IG G AG+ AA  L      V L+E R  +GG   +      GF  D     +  + 
Sbjct: 111 VAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKD-SRKVVEELV 168

Query: 89  QE 90
            +
Sbjct: 169 GK 170

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLES----RDRVGGRVH 68
          V+VIGAG AG  AA  ++ + FKV ++E     R  +G  + 
Sbjct: 8  VLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLL 49

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 26 ARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRDRVG 64
          +    +++ GAG+ G++ A ALH A   KV LLES   + 
Sbjct: 2  SEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIR 41

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458

 Score = 41.0 bits (97), Expect = 7e-04
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 10/66 (15%)

Query: 231 ELLPGGHGLMVRGYLPVINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGG---KTFVAD 286
            +LP     +     PV  +L K G+ + LGH V        G  +  +G        AD
Sbjct: 205 RILPTYDSELTA---PVAESLKKLGIALHLGHSVEGYEN---GCLLANDGKGGQLRLEAD 258

Query: 287 AVVVAV 292
            V+VAV
Sbjct: 259 RVLVAV 264

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472

 Score = 41.0 bits (97), Expect = 7e-04
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 252 AKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 296
              + +  G +V ++      V   +   +T  AD V++A   GV
Sbjct: 214 KNDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAA--GV 256

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 5/45 (11%)

Query: 253 KGLDIRLGHRVTKITRHYIGVKVTVE-----GGKTFVADAVVVAV 292
           +G++I  G  VT+I     G    V      G      D V + +
Sbjct: 268 QGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGL 312

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	507
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	100.0
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	100.0
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	100.0
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	100.0
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	100.0
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	100.0
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	100.0
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	100.0
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	100.0
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	100.0
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	100.0
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	100.0
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	100.0
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	100.0
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	100.0
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	100.0
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	100.0
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	100.0
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	100.0
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	100.0
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	100.0
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	100.0
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	100.0
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.97
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.96
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	99.94
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	99.93
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	99.92
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	99.9
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	99.87
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.82
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	99.8
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	99.79
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	99.78
2e1m_C	181	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	99.64
3dme_A	369	Conserved exported protein; structural genomics, P	99.51
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.47
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.47
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.45
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.42
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	99.42
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.39
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.37
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.36
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.36
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.35
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.35
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.32
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.32
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.31
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.3
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.3
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.26
4hb9_A	412	Similarities with probable monooxygenase; flavin,	99.24
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.23
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.22
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.18
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.18
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.17
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.17
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.16
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.16
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.16
3atr_A	453	Conserved archaeal protein; saturating double bond	99.16
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.16
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.14
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.13
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	99.13
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.12
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.12
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.1
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.09
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.09
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.07
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.07
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.06
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.05
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.04
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.03
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.01
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.01
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.0
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.99
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.99
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.98
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.98
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.96
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.96
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.93
2e1m_B	130	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.93
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.91
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.91
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.88
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.86
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.86
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.85
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.84
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.84
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.84
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.83
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.83
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.82
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.8
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.8
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.8
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.8
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.79
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.79
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.78
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.77
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.77
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.72
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	98.71
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.71
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.7
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.7
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.69
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.69
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.69
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.67
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.66
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.66
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.65
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.65
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.65
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.65
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.65
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.64
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.61
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.59
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.58
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.57
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.55
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.49
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.49
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.47
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.44
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.43
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.4
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.4
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.4
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.36
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.36
4dna_A	463	Probable glutathione reductase; structural genomic	98.36
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.36
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.33
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.32
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.32
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.31
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.3
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.3
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.28
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.27
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.27
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.26
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.25
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.25
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.23
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.23
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.22
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.22
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.21
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.21
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.18
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.18
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.17
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.16
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.16
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.14
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.14
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.13
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.13
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.13
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.12
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.12
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.09
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.09
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.06
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.06
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.02
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	98.01
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.99
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.97
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.97
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.97
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.97
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.96
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.93
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.93
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.93
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.92
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.92
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.92
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.88
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.88
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	97.88
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.87
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	97.87
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.86
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.85
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.84
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.83
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.82
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.81
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.79
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.79
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.79
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.78
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.78
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.77
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.76
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.75
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.75
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.75
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.75
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.75
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.75
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.75
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.74
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.71
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.7
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.69
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.69
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.68
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.67
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.66
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.66
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	97.66
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.66
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.65
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.65
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.64
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.64
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.64
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.57
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.56
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.55
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.54
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.52
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.52
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.48
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.47
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	97.46
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.45
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.44
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.43
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.43
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.43
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.42
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.39
4dna_A	463	Probable glutathione reductase; structural genomic	97.39
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.35
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.34
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.29
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.28
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.26
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.25
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.21
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.2
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.18
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.18
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.14
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.11
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.01
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	96.94
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	96.78
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	96.62
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	96.46
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	96.42
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	96.37
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.35
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	96.3
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	96.27
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.26
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.19
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.1
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.02
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	95.94
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	95.8
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	95.77
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	95.73
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.63
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.56
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	95.55
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.51
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.34
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	95.34
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	95.32
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	95.27
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	95.17
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.15
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.1
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	95.03
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	95.02
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	94.99
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	94.98
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	94.98
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	94.98
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	94.95
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	94.93
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	94.92
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	94.89
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	94.81
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	94.79
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	94.79
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	94.72
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	94.72
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	94.71
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	94.7
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	94.67
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	94.62
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	94.6
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	94.57
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	94.57
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	94.54
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.53
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	94.51
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	94.51
3qha_A	296	Putative oxidoreductase; seattle structural genomi	94.5
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	94.49
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	94.43
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	94.37
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	94.36
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	94.36
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	94.35
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	94.32
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	94.3
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	94.29
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	94.28
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	94.27
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	94.25
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	94.24
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	94.22
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	94.19
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	94.14
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	94.08
4g65_A	461	TRK system potassium uptake protein TRKA; structur	94.07
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	94.05
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	94.02
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	93.99
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	93.97
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	93.95
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	93.9
4ezb_A	317	Uncharacterized conserved protein; structural geno	93.88
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	93.88
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	93.87
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	93.78
3tl2_A	315	Malate dehydrogenase; center for structural genomi	93.77
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	93.72
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	93.71
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	93.66
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	93.65
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	93.62
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	93.59
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	93.56
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	93.56
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	93.56
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	93.48
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	93.36
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	93.34
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	93.34
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	93.33
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	93.31
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	93.3
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	93.29
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	93.28
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	93.19
3r9u_A	315	Thioredoxin reductase; structural genomics, center	93.15
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	93.14
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	93.11
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	93.11
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	93.07
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	93.03
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	93.03
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	93.0
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	92.98
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	92.91
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	92.89
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	92.88
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	92.86
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	92.85
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	92.81
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	92.79
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	92.69
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	92.68
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	92.66
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	92.6
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	92.53
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	92.52
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	92.51
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	92.43
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	92.42
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	92.38
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	92.36
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	92.34
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	92.32
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	92.31
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	92.3
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	92.29
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	92.26
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	92.23
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	92.22
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	92.17
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	92.13
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	92.12
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	92.12
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	92.05
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	92.04
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	91.96
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	91.89
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	91.84
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	91.84
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	91.81
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	91.79
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	91.75
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	91.74
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	91.73
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	91.69
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	91.68
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	91.65
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	91.58
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	91.54
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	91.49
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	91.41
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	91.36
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	91.29
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	91.25
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	91.19
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	91.18
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	91.15
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	91.14
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	91.12
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	91.09
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	91.05
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	91.03
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	91.03
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	90.96
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	90.93
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	90.87
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	90.85
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	90.83
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	90.44
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	90.43
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	90.43
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	90.43
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	90.35
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	90.31
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	90.27
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	90.22
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	90.22
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	90.15
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	90.15
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	90.09
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	90.04
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	89.91
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	89.63
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	89.56
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	89.53
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	89.52
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	89.5
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	89.49
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	89.41
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	89.37
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	89.34
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	89.33
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	89.32
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	89.3
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	89.28
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	89.28
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	88.79
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	89.16
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	89.09
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	89.08
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	89.07
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	88.9
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	88.81
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	88.75
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	88.69
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	88.56
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	88.46
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	88.46
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	88.4
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	88.35
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	88.33
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	88.28
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	88.23
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	88.2
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	88.17
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	88.15
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	88.1
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	87.88
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	87.76
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	87.72
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	87.58
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	87.57
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	87.53
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	87.52
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	87.45
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	87.43
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	87.41

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=100.00  E-value=2.2e-46  Score=386.30  Aligned_cols=439  Identities=22%  Similarity=0.284  Sum_probs=315.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCC-CeeeecCCceeeCCCCCCchHHHHHhcCCCee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLY  105 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~-g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~  105 (507)
                      +++||+|||||++||+||++|+++|++|+|||+++++||+++|.... |+.+|.|++++++.  ++.+.++++++|++..
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~--~~~~~~l~~~lgl~~~   80 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT--QNRILRLAKELGLETY   80 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCTTTSCEESSCCEECTT--CHHHHHHHHHTTCCEE
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccCCCcccccCceEecCC--cHHHHHHHHHcCCcce
Confidence            46899999999999999999999999999999999999999998885 99999999999743  5578899999999865


Q ss_pred             eecCCCccc-ccccchhhhhhhhhhHHhhhcccceeecCCCC-ccCHHHHHHHHHHHHHHHHHHHHHhhc----------
Q 010542          106 RTSGDNSVL-YDHDLESRVLKTVVVSLIQANLCYALFDMDGN-QVPQELVTKVGEAFESILKETDKVREE----------  173 (507)
Q Consensus       106 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  173 (507)
                      ........+ +.++.                  ...+..... .........    +.++.....++...          
T Consensus        81 ~~~~~~~~~~~~~g~------------------~~~~~~~~p~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  138 (520)
T 1s3e_A           81 KVNEVERLIHHVKGK------------------SYPFRGPFPPVWNPITYLD----HNNFWRTMDDMGREIPSDAPWKAP  138 (520)
T ss_dssp             ECCCSSEEEEEETTE------------------EEEECSSSCCCCSHHHHHH----HHHHHHHHHHHHTTSCTTCGGGST
T ss_pred             ecccCCceEEEECCE------------------EEEecCCCCCCCCHHHHHH----HHHHHHHHHHHHhhcCcCCCcccc
Confidence            432222111 11110                  001111000 011111111    11122222211111          


Q ss_pred             ---CCCCCcHHHHHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCcccc------------ccCCc
Q 010542          174 ---HDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEEL------------LPGGH  237 (507)
Q Consensus       174 ---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~------------~~~~~  237 (507)
                         ..++.++.++++...           ..+.++.++.++ ...++.++.++++..+.....            ..+..
T Consensus       139 ~~~~~~~~s~~~~l~~~~-----------~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~  207 (520)
T 1s3e_A          139 LAEEWDNMTMKELLDKLC-----------WTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQE  207 (520)
T ss_dssp             THHHHHTSBHHHHHHHHC-----------SSHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTS
T ss_pred             chhhhhccCHHHHHHhhC-----------CCHHHHHHHHHHHhhhcCCChHHhHHHHHHHHHhhcCchhhhcccCCCcce
Confidence               023567777776432           223334444544 346777777777665421100            11234


Q ss_pred             cccccchHHHHHHHhc--cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHH
Q 010542          238 GLMVRGYLPVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAA  315 (507)
Q Consensus       238 ~~~~~G~~~l~~~l~~--g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~  315 (507)
                      .++.+|++.++++|.+  |++|++|++|++|..+++++.|++.+|+++.||+||+|+|+..+..+  .+.|.+|+...+.
T Consensus       208 ~~~~gG~~~l~~~l~~~lg~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~l--~~~p~lp~~~~~~  285 (520)
T 1s3e_A          208 RKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMKI--HFNPPLPMMRNQM  285 (520)
T ss_dssp             EEETTCTHHHHHHHHHHHGGGEESSCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGGGGGS--EEESCCCHHHHHH
T ss_pred             EEEeCCHHHHHHHHHHHcCCcEEcCCeeEEEEECCCeEEEEECCCeEEEeCEEEECCCHHHHcce--eeCCCCCHHHHHH
Confidence            5789999999999987  88999999999999998899999999989999999999999987643  4678899999999


Q ss_pred             HHHcCCcceeEEEEEccCCCCCCCccceeec--CC-CCceeeeeccccCCCceEEEEEeccchhHHHhcCCHHHHHHHHH
Q 010542          316 IDDLGVGIENKIIMHFDKVFWPNVEFLGVVS--DT-SYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAF  392 (507)
Q Consensus       316 ~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~  392 (507)
                      +.+++++...++++.|++++|++.++.|...  .. ......++....+++..++++++.+..+..|.+++++++++.++
T Consensus       286 i~~~~~~~~~kv~l~~~~~~w~~~~~~g~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~vl  365 (520)
T 1s3e_A          286 ITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLC  365 (520)
T ss_dssp             TTSCCBCCEEEEEEECSSCGGGGGTEEEEEEECSTTCSCSEEEECCCTTSCSCEEEEEEETHHHHHHTTSCHHHHHHHHH
T ss_pred             HHhCCCcceEEEEEEeCCCcccCCCCCceeeccCCCCceEEEeeCCCCCCCCCEEEEEccchhhhhhhcCCHHHHHHHHH
Confidence            9999999999999999999998765555432  22 22223333333333457888888887777888999999999999


Q ss_pred             HHHHHhCCC--CCCCcEEEeccCCCCCCCCcccc-cCCCCCchHHHHHhcCCCCceEEeeccccCcCCchhhHHHHHHHH
Q 010542          393 TQLKKILPD--ASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLM  469 (507)
Q Consensus       393 ~~L~~~~p~--~~~~~~~~~~~w~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA~~SG~~  469 (507)
                      ++|+++||.  ...|..+...+|..++++.|+|. +..+++.....+.+.+|++||||||++++..++|+++||+.||.+
T Consensus       366 ~~L~~~~~~~~~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~l~~p~~~L~fAG~~t~~~~~g~v~GAi~SG~~  445 (520)
T 1s3e_A          366 ELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGER  445 (520)
T ss_dssp             HHHHHHHTCGGGGCCSEEEEEEGGGCTTTCSSSCBCCCTTHHHHHGGGTTCCBTTEEECSGGGCSSSTTSHHHHHHHHHH
T ss_pred             HHHHHHhCccccCCccEEEEEeeCCCCCCCCCCccccCCCccccchHHHhCCCCCEEEeehhhcCcCcEEhHHHHHHHHH
Confidence            999999985  35788889999999999999887 566777655566788999999999999987777999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCccccccCCCccccccee
Q 010542          470 AAEDCRMRVLERYGELDLFQPVMGEETPISVPFL  503 (507)
Q Consensus       470 aA~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  503 (507)
                      ||++|++.+... .....++....+......||.
T Consensus       446 aA~~i~~~l~~~-~~~~~~~~~~~~~~~~~~~~~  478 (520)
T 1s3e_A          446 AAREILHAMGKI-PEDEIWQSEPESVDVPAQPIT  478 (520)
T ss_dssp             HHHHHHHHTTSS-CGGGSSCCCCCCSSSCCCCCC
T ss_pred             HHHHHHHHHhcC-ccccccccCCccccCCccccc
Confidence            999998876432 334555555555566666664

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=100.00  E-value=2.7e-44  Score=364.86  Aligned_cols=419  Identities=21%  Similarity=0.280  Sum_probs=296.8

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCeee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR  106 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~  106 (507)
                      .++||+|||||++||+||++|+++|++|+|||+++++||++++....|+.+|.|++++..  ....+.++++++|+....
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~--~~~~~~~~~~~~g~~~~~   81 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSP--DQTALISLLDELGLKTFE   81 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEETTEEEECSCCCBCT--TCHHHHHHHHHTTCCEEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceeccccCCceeccCCeEecC--ccHHHHHHHHHcCCcccc
Confidence            357999999999999999999999999999999999999999988789999999998864  345788999999998654


Q ss_pred             ecCCCccc-ccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhc---------CCC
Q 010542          107 TSGDNSVL-YDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREE---------HDE  176 (507)
Q Consensus       107 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~  176 (507)
                      .......+ +..+..                 ...+......+...........+..+..........         ...
T Consensus        82 ~~~~~~~~~~~~~g~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (453)
T 2yg5_A           82 RYREGESVYISSAGE-----------------RTRYTGDSFPTNETTKKEMDRLIDEMDDLAAQIGAEEPWAHPLARDLD  144 (453)
T ss_dssp             CCCCSEEEEECTTSC-----------------EEEECSSSCSCCHHHHHHHHHHHHHHHHHHHHHCSSCGGGSTTHHHHH
T ss_pred             cccCCCEEEEeCCCc-----------------eeeccCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCCCcchhhhh
Confidence            33222111 111000                 011111111122211111111111111111111100         113


Q ss_pred             CCcHHHHHHHHhccChhHHhhhhHHHHHHHHHHhhh-ccccCCcc-cccccccCcccccc-----------CCccccccc
Q 010542          177 DMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRME-GWFAADAE-TISLKSWDKEELLP-----------GGHGLMVRG  243 (507)
Q Consensus       177 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~s~~~~~~~~~~~-----------~~~~~~~~G  243 (507)
                      +.++.+++....           ..+.++.++.++. ..++.++. .+++..+.......           ....++.+|
T Consensus       145 ~~s~~~~l~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~gG  213 (453)
T 2yg5_A          145 TVSFKQWLINQS-----------DDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFSHLVDEDFILDKRVIGG  213 (453)
T ss_dssp             SSBHHHHHHHHC-----------SCHHHHHHHHHHHCCCCCCSCTTSSBHHHHHHHHHHTTCHHHHHCHHHHTCEEETTC
T ss_pred             hccHHHHHHhhc-----------CCHHHHHHHHHHHHhhcccCCcccccHHHHHHHhccCCcHhhhccCCCcceEEEcCC
Confidence            567777766432           2233444555543 56666776 77665442111111           123578899


Q ss_pred             hHHHHHHHhc--cCCcccCceeEEEEeeCCc-EEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcC
Q 010542          244 YLPVINTLAK--GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLG  320 (507)
Q Consensus       244 ~~~l~~~l~~--g~~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~  320 (507)
                      ++.++++|.+  |++|++|++|++|..++++ +.|++ +|+++.||+||+|+|+..+..+  .+.|.+|+...+.+.+++
T Consensus       214 ~~~l~~~l~~~lg~~i~~~~~V~~i~~~~~~~v~v~~-~~~~~~ad~VI~a~p~~~~~~l--~~~p~lp~~~~~~i~~~~  290 (453)
T 2yg5_A          214 MQQVSIRMAEALGDDVFLNAPVRTVKWNESGATVLAD-GDIRVEASRVILAVPPNLYSRI--SYDPPLPRRQHQMHQHQS  290 (453)
T ss_dssp             THHHHHHHHHHHGGGEECSCCEEEEEEETTEEEEEET-TTEEEEEEEEEECSCGGGGGGS--EEESCCCHHHHHHGGGEE
T ss_pred             hHHHHHHHHHhcCCcEEcCCceEEEEEeCCceEEEEE-CCeEEEcCEEEEcCCHHHHhcC--EeCCCCCHHHHHHHhcCC
Confidence            9999999987  6799999999999999888 88876 6778999999999999987643  467889999899999999


Q ss_pred             CcceeEEEEEccCCCCCCCccceeecCC-CCceeeeeccccCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhC
Q 010542          321 VGIENKIIMHFDKVFWPNVEFLGVVSDT-SYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL  399 (507)
Q Consensus       321 ~~~~~~~~l~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~  399 (507)
                      +....++++.|++++|++.++.|.+... ......+++...+++..++++++.+..+..|.+++++++++.++++|++++
T Consensus       291 ~~~~~kv~l~~~~~~w~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~  370 (453)
T 2yg5_A          291 LGLVIKVHAVYETPFWREDGLSGTGFGASEVVQEVYDNTNHEDDRGTLVAFVSDEKADAMFELSAEERKATILASLARYL  370 (453)
T ss_dssp             ECCEEEEEEEESSCGGGGGTEEEEEECTTSSSCEEEECCCTTCSSEEEEEEEEHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             CcceEEEEEEECCCCCCCCCCCceeecCCCCeEEEEeCCCCCCCCCEEEEEeccHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999866555554322 222333343332333568888887777778888999999999999999999


Q ss_pred             CC-CCCCcEEEeccCCCCCCCCcccc-cCCCCCchHHHHHhcCCCCceEEeeccccCcCCchhhHHHHHHHHHHHHHHHH
Q 010542          400 PD-ASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR  477 (507)
Q Consensus       400 p~-~~~~~~~~~~~w~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~  477 (507)
                      |. ..+|..+..++|..++++.|+|. +..++......+.+.+|++||||||++++..++|+++||+.||.+||++|++.
T Consensus       371 ~~~~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~  450 (453)
T 2yg5_A          371 GPKAEEPVVYYESDWGSEEWTRGCYAASFDLGGLHRYGADSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIAR  450 (453)
T ss_dssp             CGGGGCCSEEEECCTTTCTTTCSSSCEEECTTHHHHHGGGTTCCBTTEEECCGGGCSTTTTSHHHHHHHHHHHHHHHHHH
T ss_pred             CccCCCccEEEEeecCCCCCCCCCCcCcCCCCccccchHHHhCCcCceEEeecccccccccchHHHHHHHHHHHHHHHHH
Confidence            74 45788888999999999998875 44577554555568899999999999998777799999999999999999875


Q ss_pred             H
Q 010542          478 V  478 (507)
Q Consensus       478 l  478 (507)
                      +
T Consensus       451 l  451 (453)
T 2yg5_A          451 S  451 (453)
T ss_dssp             C
T ss_pred             h
Confidence            4

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=100.00  E-value=2.2e-42  Score=365.46  Aligned_cols=421  Identities=31%  Similarity=0.536  Sum_probs=307.0

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccC-CCeeeecCCceeeCCCCCCchHHHHHhcCCCe
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS-FGFPVDLGASWLHGVCQENPLAPVISRLGLPL  104 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~  104 (507)
                      ...+||+|||||++||+||+.|++.|++|+|+|+.+++||+++|... .|+.+|.|++++++. ..+.+..+++++|++.
T Consensus       334 ~~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ggri~T~~~~~G~~vd~Ga~~i~G~-~~np~~~l~~~lGl~~  412 (776)
T 4gut_A          334 YHNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNGC-INNPVALMCEQLGISM  412 (776)
T ss_dssp             GTSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTTCCEECCSTTCCEESSCCEEECC-TTCHHHHHHHHHTCCC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceeceeeeccccCCeEeccCCeEEeCC-ccChHHHHHHHhCCcc
Confidence            44689999999999999999999999999999999999999988654 589999999999874 4556788999999975


Q ss_pred             eeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhc--CCCCCcHHH
Q 010542          105 YRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREE--HDEDMSIQR  182 (507)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  182 (507)
                      ........++                           ...+..............+..+..........  ...+.++.+
T Consensus       413 ~~~~~~~~l~---------------------------~~~g~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~d~sl~~  465 (776)
T 4gut_A          413 HKFGERCDLI---------------------------QEGGRITDPTIDKRMDFHFNALLDVVSEWRKDKTQLQDVPLGE  465 (776)
T ss_dssp             EECCSCCCEE---------------------------CTTSCBCCHHHHHHHHHHHHHHHHHHHHHGGGCCGGGCCBHHH
T ss_pred             cccccccceE---------------------------ccCCcccchhHHHHHHHHHHHHHHHHHHHhhcccccccccHHH
Confidence            5433322221                           11222222222222222333333333332221  123445554


Q ss_pred             HHHHHhccChhHHhh-----hhHHHHHHHHHHhhhccccCCcccccccccCcc---ccccCCccccccchHHHHHHHhcc
Q 010542          183 AISIVFDRRPELRLE-----GLAHKVLQWYLCRMEGWFAADAETISLKSWDKE---ELLPGGHGLMVRGYLPVINTLAKG  254 (507)
Q Consensus       183 ~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~---~~~~~~~~~~~~G~~~l~~~l~~g  254 (507)
                      .+...+...  +...     ......+......+....+..+..++...+...   ....+....+.+|++.++++|.+|
T Consensus       466 ~~~~~~~~~--l~~~gv~~~~l~~~~l~~~~~~l~~~~G~~l~~ls~~~~~~~~~~~~~~G~~~~~~~G~~~l~~aLa~g  543 (776)
T 4gut_A          466 KIEEIYKAF--IKESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLLTPGYSVIIEKLAEG  543 (776)
T ss_dssp             HHHHHHHHH--HHHSCCCCCHHHHHHHHHHHHHHHHHHTSCTTSBBTTTTTGGGGSCCCCSCEEECTTCTHHHHHHHHTT
T ss_pred             HHHHHHHHH--HHhcCCCccchhHHHHHHHHHHHHHhcCCChHHcChhhhhhhhhHHhcCCCeEEECChHHHHHHHHHhC
Confidence            433222110  0000     111222222222222334455555555544321   123455567889999999999999


Q ss_pred             CCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcceeEEEEEccCC
Q 010542          255 LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKV  334 (507)
Q Consensus       255 ~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~  334 (507)
                      ++|++|++|++|+.++++|.|++.+|+++.||+||+|+|+..+....+.|.|+||+...+++..++++...|+++.|+.+
T Consensus       544 l~I~l~t~V~~I~~~~~~v~V~~~~G~~i~Ad~VIvA~P~~vL~~~~i~f~P~Lp~~~~~ai~~l~~g~~~KV~l~f~~~  623 (776)
T 4gut_A          544 LDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYR  623 (776)
T ss_dssp             SCEESSCCEEEEECSSSSEEEEETTCCEEEESEEEECCCHHHHHTTCSEEESCCCHHHHHHHHHEEEECCEEEEEECSSC
T ss_pred             CcEEcCCeeEEEEEcCCEEEEEECCCcEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHhCCCeeEEEEEEecCcc
Confidence            99999999999999999999999999899999999999999987666789999999999999999999999999999999


Q ss_pred             CCCCC----ccceeecCCC---CceeeeeccccCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhCCC--CCCC
Q 010542          335 FWPNV----EFLGVVSDTS---YGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD--ASSP  405 (507)
Q Consensus       335 ~~~~~----~~~g~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p~--~~~~  405 (507)
                      ||++.    +++|.+....   .....+.+..+.++..+|++++.+..+..+..++++++++.++++|.++|+.  ...|
T Consensus       624 FW~~~~~g~~~fG~l~~~~~~~~~~~~~~d~~p~g~~~vL~~~i~G~~a~~l~~lsdeel~~~~l~~L~~ifg~~~~~~P  703 (776)
T 4gut_A          624 FWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVPDP  703 (776)
T ss_dssp             TTHHHHTTCSEEEECCSSGGGTTEEEEEEESCTTSCSCEEEEEECTHHHHHHHTSCHHHHHHHHHHHHHHHTTTSCCCCC
T ss_pred             cccccCCCCceEEeecCCcCCCceEEEEecCCCCCCceEEEEEecchhHHHHHcCCHHHHHHHHHHHHHHHhCcccccCc
Confidence            99742    3455543321   1222333434344467888899888888899999999999999999999985  4568


Q ss_pred             cEEEeccCCCCCCCCcccccCCCCCchHHHHHhcCCC-CceEEeeccccCcCCchhhHHHHHHHHHHHHHHH
Q 010542          406 IQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV-DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM  476 (507)
Q Consensus       406 ~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~  476 (507)
                      ..+.+.+|..++++.|+|.+..+|......+.+.+|+ ++|||||++++..++|+|+||+.||.+||++|+.
T Consensus       704 ~~~~vt~W~~dp~s~Gsys~~~~g~~~~~~~~L~~p~~grL~FAGE~Ts~~~~gtveGAi~SG~RaA~~Ila  775 (776)
T 4gut_A          704 TKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKIAA  775 (776)
T ss_dssp             SEEEECCGGGCTTTCCSEEEEBTTCCTHHHHHHHCCBTTTEEECSGGGCSSSCSSHHHHHHHHHHHHHHHHC
T ss_pred             ceEEEecCCCCCccCCCCCccCCCCchhHHHHHhCcCCCcEEEEehhhcCCCCcCHHHHHHHHHHHHHHHHh
Confidence            8999999999999999999877887766777888886 8999999999988889999999999999999874

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=100.00  E-value=5.4e-42  Score=360.97  Aligned_cols=447  Identities=31%  Similarity=0.500  Sum_probs=296.8

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY  105 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~  105 (507)
                      ...+||+|||||++||+||+.|++.|++|+|+|+++++||++.+.+..++.+|.|++++++. ..+.+..+.+++|++..
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~l~~~l~~~~~  183 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGL-GGNPMAVVSKQVNMELA  183 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEETTEEEESSCCEECCS-BTCHHHHHHHHHTCCEE
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccccCchhhcCcEEEeCC-CCchHHHHHHHhCcchh
Confidence            56789999999999999999999999999999999999999999888899999999998764 34567788999999765


Q ss_pred             eecCCCcccccccchh-h--------hhhhhh--hHHhhhcccceeecCCCCccCH-HHHHHHH--------HHHHHHHH
Q 010542          106 RTSGDNSVLYDHDLES-R--------VLKTVV--VSLIQANLCYALFDMDGNQVPQ-ELVTKVG--------EAFESILK  165 (507)
Q Consensus       106 ~~~~~~~~~~~~~~~~-~--------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~~~  165 (507)
                      .......++...+... .        .+....  ..............  ...... .....+.        ..+.....
T Consensus       184 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  261 (662)
T 2z3y_A          184 KIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLN--NKPVSLGQALEVVIQLQEKHVKDEQIEHWK  261 (662)
T ss_dssp             ECCSCCCEECTTSCBCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCEET--TEECBHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccceEEeCCCcCCCcchhhhhhHHHHHHHHHHHHHHhcccccccC--CCCCCHHHHHHHHHHhhhhhhhhhhhhhhh
Confidence            5432222222211110 0        000000  00000000000000  111111 1111100        00000000


Q ss_pred             HH----H-------HHh------hcCCCC----------------CcHHH-------HHHHHhccChhHH----------
Q 010542          166 ET----D-------KVR------EEHDED----------------MSIQR-------AISIVFDRRPELR----------  195 (507)
Q Consensus       166 ~~----~-------~~~------~~~~~~----------------~~~~~-------~~~~~~~~~~~l~----------  195 (507)
                      .+    .       ++.      ......                .++..       .++.+........          
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~s~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~  341 (662)
T 2z3y_A          262 KIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELE  341 (662)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCC--------CCTHHHHHHHHHHHHTTTHHHHHHHTHHHHHHHHHHHHHT
T ss_pred             hhhhhhhhhhhhhhhhcchhhhHHHHhhhhhhhhhcccccccchhhhhhhhhhhHHHHHhhhhhhhhhhhhHHHHHHHhh
Confidence            00    0       000      000000                00000       0000000000000          


Q ss_pred             --------hhhhHHHHHHHHHHhhhccccCCcccccccccCcc--ccccCCccccccchHHHHHHHhccCCcccCceeEE
Q 010542          196 --------LEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKE--ELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTK  265 (507)
Q Consensus       196 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~~~~~G~~~l~~~l~~g~~i~~~~~V~~  265 (507)
                              .......++++++..+....+.....+++..+...  ....+....+.+|++.|+++|.++++|++|++|++
T Consensus       342 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~~g~~~~~~gG~~~l~~~La~~l~I~l~~~V~~  421 (662)
T 2z3y_A          342 ANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQ  421 (662)
T ss_dssp             TSCCCSCSSCHHHHHHHHHHHHHHHHHTTSCGGGBBTTTTTTTGGGCCBSCCEEETTCTTHHHHHHTTTCEEETTEEEEE
T ss_pred             ccCcccccccHHHHHHHHHHHHHHHHhcCCChhhcCHhhcCCCcccccCCceeeecCcHHHHHHHHHhcCceecCCeEEE
Confidence                    00011122233222222223445555665544322  12345567889999999999999999999999999


Q ss_pred             EEeeCCcEEEEEcC------CcEEEcCEEEEecCchhhccC--cccccCCCcHHHHHHHHHcCCcceeEEEEEccCCCCC
Q 010542          266 ITRHYIGVKVTVEG------GKTFVADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWP  337 (507)
Q Consensus       266 I~~~~~~v~v~~~~------g~~~~ad~VI~a~p~~~~~~l--~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  337 (507)
                      |..+++++.|++.+      |+++.||+||+|+|+..+..+  .+.|.|+||+...+++.+++++...|+++.|+++||+
T Consensus       422 I~~~~~~v~V~~~~~~~~~~~~~~~Ad~VI~tvP~~vL~~l~~~i~f~P~LP~~k~~Ai~~l~~g~~~KV~l~f~~~fW~  501 (662)
T 2z3y_A          422 VRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWD  501 (662)
T ss_dssp             EEEETTEEEEEEEESSCTTCEEEEEESEEEECCCHHHHHCSSCSSEEESCCCHHHHHHHHHSEECCCEEEEEECSSCCSC
T ss_pred             EEECCCcEEEEEeecccCCCCeEEEeCEEEECCCHHHHhcccCceEEcCCCCHHHHHHHHhCCccceeEEEEEcCccccc
Confidence            99999999998876      568999999999999998763  3678999999999999999999999999999999998


Q ss_pred             C-CccceeecCCC---CceeeeeccccCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhCCC--CCCCcEEEec
Q 010542          338 N-VEFLGVVSDTS---YGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD--ASSPIQYLVS  411 (507)
Q Consensus       338 ~-~~~~g~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p~--~~~~~~~~~~  411 (507)
                      + .+.+|.+....   .....+++..   +..+|++++.+..+..+..++++++++.++++|.++|+.  ..+|..+.+.
T Consensus       502 ~~~~~~G~l~~~~~~~~~~~~~~~~~---~~~vL~~~~~G~~a~~~~~lsdee~~~~~l~~L~~~~g~~~~~~p~~~~v~  578 (662)
T 2z3y_A          502 PSVNLFGHVGSTTASRGELFLFWNLY---KAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVS  578 (662)
T ss_dssp             TTCSEEEECCSSSTTTTEEEEEECCS---SSSEEEEEECTHHHHHHTTSCHHHHHHHHHHHHHHHHCTTSSCCCSEEEEC
T ss_pred             CCCCceeeecCCCCCCCceeEEEeCC---CCCEEEEEeccHhHHHHHhCCHHHHHHHHHHHHHHHhCCcccCCCceeEEE
Confidence            5 35566654321   1112222222   445888888888888888999999999999999999976  4578899999


Q ss_pred             cCCCCCCCCcccccCCCCCchHHHHHhcCCC-------------CceEEeeccccCcCCchhhHHHHHHHHHHHHHHHHH
Q 010542          412 HWGTDANSLGSYSYDTVGKSHDLYERLRIPV-------------DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV  478 (507)
Q Consensus       412 ~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------------~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~l  478 (507)
                      +|..++++.|+|++..+|......+.+..|+             ++|||||++++..++|||+||+.||.+||++|++.+
T Consensus       579 ~W~~dp~~~Gsys~~~pg~~~~~~~~l~~p~~~~~~~~~~~~~~grl~FAGe~ts~~~~g~v~GAi~SG~raA~~i~~~~  658 (662)
T 2z3y_A          579 RWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQF  658 (662)
T ss_dssp             CTTTCTTTSSSCEECBTTCCTHHHHHHHCCBCC---------CCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCCcccccCCCCCchhhHHHHhCcCccccccccccCCCCcEEEEeccccCCCCcCHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999888998766666666654             689999999998788999999999999999998765

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=100.00  E-value=2.5e-43  Score=361.59  Aligned_cols=408  Identities=21%  Similarity=0.284  Sum_probs=290.5

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCC--Cee
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGL--PLY  105 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~--~~~  105 (507)
                      .+||+|||||++||+||++|+++|++|+|||+++++|||++|...+|+.+|.|++++++  .+..+.++++++|+  +..
T Consensus        39 ~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~~--~~~~~~~~l~~lgl~~~~~  116 (495)
T 2vvm_A           39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHW--HQSHVWREITRYKMHNALS  116 (495)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEEETTEEEECSCCCBCT--TSHHHHHHHHHTTCTTCEE
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcceecccCCeeecCCCeEecC--ccHHHHHHHHHcCCcceee
Confidence            38999999999999999999999999999999999999999998899999999999974  35578999999999  443


Q ss_pred             eec----CCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHH-HHHHHHHHHHHHHH----HHHHHhh----
Q 010542          106 RTS----GDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQE-LVTKVGEAFESILK----ETDKVRE----  172 (507)
Q Consensus       106 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~----  172 (507)
                      ...    ....+.+..+.                       .....++.. ........+.++..    ....+..    
T Consensus       117 ~~~~~~~~~~~~~~~~~~-----------------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (495)
T 2vvm_A          117 PSFNFSRGVNHFQLRTNP-----------------------TTSTYMTHEAEDELLRSALHKFTNVDGTNGRTVLPFPHD  173 (495)
T ss_dssp             ESCCCSSSCCEEEEESST-----------------------TCCEEECHHHHHHHHHHHHHHHHCSSSSTTTTTCSCTTS
T ss_pred             cccccCCCceEEEecCCC-----------------------CceeecCHHHHHHHHHHHHHHHHccchhhhhhcCCCCCC
Confidence            322    11111111100                       000112221 11111111112211    0000000    


Q ss_pred             -------cCCCCCcHHHHHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCcccc----------cc
Q 010542          173 -------EHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEEL----------LP  234 (507)
Q Consensus       173 -------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~----------~~  234 (507)
                             ...++.++.++++....        .++.. .+.++.++ ...++.+++.+++..+.....          ..
T Consensus       174 ~~~~~~~~~~~~~s~~~~l~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  244 (495)
T 2vvm_A          174 MFYVPEFRKYDEMSYSERIDQIRD--------ELSLN-ERSSLEAFILLCSGGTLENSSFGEFLHWWAMSGYTYQGCMDC  244 (495)
T ss_dssp             TTSSTTHHHHHTSBHHHHHHHHGG--------GCCHH-HHHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSSHHHHHHH
T ss_pred             cccCcchhhhhhhhHHHHHHHhhc--------cCCHH-HHHHHHHHHHHhcCCCcchhhHHHHHHHHHHcCCCHHHHHhh
Confidence                   00124567776653310        02222 23344443 345666777777654432110          01


Q ss_pred             CCccccccchHHHHHHHhc-----c-CCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCC
Q 010542          235 GGHGLMVRGYLPVINTLAK-----G-LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRL  308 (507)
Q Consensus       235 ~~~~~~~~G~~~l~~~l~~-----g-~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l  308 (507)
                      .+...+.+|++.++++|.+     | ++|+++++|++|..+++++.|++.+|+++.||+||+|+|+..+..  +.+.|+|
T Consensus       245 ~~~~~~~gG~~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~l~~--i~~~p~l  322 (495)
T 2vvm_A          245 LMSYKFKDGQSAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLST--IQFSPAL  322 (495)
T ss_dssp             HHSEEETTCHHHHHHHHHHHHHTTTCEEEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGGGGGG--SEEESCC
T ss_pred             hceEEeCCCHHHHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHHHhh--eeeCCCC
Confidence            2345678999999998865     4 679999999999998888999999998899999999999998875  3477899


Q ss_pred             cHHHHHHHHHcCCcceeEEEEEccCCCCCCCccceeecCCCCceeeeeccccCCCceEEEEEeccchhHHHhcCCHHHHH
Q 010542          309 PDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAA  388 (507)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~  388 (507)
                      |+...+++..+.+....++++.|+.++|+  ++.|...........+.+...+++..+++++.... .    .+++++..
T Consensus       323 p~~~~~ai~~~~~~~~~kv~l~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~-~----~~~~~e~~  395 (495)
T 2vvm_A          323 STERISAMQAGHVSMCTKVHAEVDNKDMR--SWTGIAYPFNKLCYAIGDGTTPAGNTHLVCFGNSA-N----HIQPDEDV  395 (495)
T ss_dssp             CHHHHHHHHHCCCCCCEEEEEEESCGGGG--GEEEEECSSCSSCEEEEEEECTTSCEEEEEEECST-T----CCCTTTCH
T ss_pred             CHHHHHHHHhcCCCceeEEEEEECCccCC--CceeEecCCCCcEEEecCCCCCCCCeEEEEEeCcc-c----cCCCHHHH
Confidence            99999999999999999999999999984  45565443333333444444456667777766432 1    14566778


Q ss_pred             HHHHHHHHHhCCCCCCCcEEEeccCCCCCCCCcccccCCCCCchHHHHHhcCCCCceEEeeccccCcCCchhhHHHHHHH
Q 010542          389 NFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGL  468 (507)
Q Consensus       389 ~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA~~SG~  468 (507)
                      +.++++|++++|+...|..+.+++|..++++.|+|.+..+|......+.+.+|.++|||||++++..++||||||+.||.
T Consensus       396 ~~~~~~L~~~~~~~~~~~~~~~~~W~~dp~~~g~y~~~~~g~~~~~~~~l~~p~~~l~fAGe~t~~~~~g~veGAi~SG~  475 (495)
T 2vvm_A          396 RETLKAVGQLAPGTFGVKRLVFHNWVKDEFAKGAWFFSRPGMVSECLQGLREKHGGVVFANSDWALGWRSFIDGAIEEGT  475 (495)
T ss_dssp             HHHHHHHHTTSTTSCCEEEEEECCTTTCTTTSSSSCCCCTTHHHHHHHHHHCCBTTEEECCGGGCSSSTTSHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCceEEEEeEcCCCCCCCCCccCcCCCcchhhHHHHhCcCCCEEEechhhhcCCceEEEhHHHHHH
Confidence            89999999999986778888899999999999999888888876678888999999999999999777799999999999


Q ss_pred             HHHHHHHHHH
Q 010542          469 MAAEDCRMRV  478 (507)
Q Consensus       469 ~aA~~i~~~l  478 (507)
                      +||++|++.+
T Consensus       476 raA~~i~~~l  485 (495)
T 2vvm_A          476 RAARVVLEEL  485 (495)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998766

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=100.00  E-value=6.5e-42  Score=363.81  Aligned_cols=447  Identities=31%  Similarity=0.481  Sum_probs=295.1

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY  105 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~  105 (507)
                      ...+||+|||||++||+||++|+++|++|+|||+++++||++.+.+..++.+|.|++++++. ..+.+..+.+++|++..
T Consensus       276 ~~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~l~~~lg~~~~  354 (852)
T 2xag_A          276 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGL-GGNPMAVVSKQVNMELA  354 (852)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEEETTEEEESSCCEECCS-BTCHHHHHHHHTTCCEE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCceeeecccccchhcCceEecCC-CCchHHHHHHHhCCchh
Confidence            45789999999999999999999999999999999999999999888899999999998764 34567788899999765


Q ss_pred             eecCCCcccccccchh---------hhhhhhh---hHHhhhcccceeecCCCCccCH-HHHHHHH--------HHHHHHH
Q 010542          106 RTSGDNSVLYDHDLES---------RVLKTVV---VSLIQANLCYALFDMDGNQVPQ-ELVTKVG--------EAFESIL  164 (507)
Q Consensus       106 ~~~~~~~~~~~~~~~~---------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~~  164 (507)
                      .......++...+...         ..+....   ..+..... ....  ....... .....+.        ..+....
T Consensus       355 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~-~~~~--~~~~~slg~~~e~v~~~~er~~~~e~l~~~  431 (852)
T 2xag_A          355 KIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLD-FNVL--NNKPVSLGQALEVVIQLQEKHVKDEQIEHW  431 (852)
T ss_dssp             ECCCCCCEECTTSCBCCHHHHHHHHHHHHHHHHHHHHHHHTSC-CCEE--TTEECBHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccccceEEecCCccccchhhhhhhhhhhhhHHHHHHHhhhhh-hhcc--cCCCccHHHHHHHhhhhhhhhcchhHHHHh
Confidence            4432222221111100         0000000   00000000 0000  0111111 1111100        0111111


Q ss_pred             HHHHHHhh---cCC-----CCCcHHHHHHH----------------------------HhccChhHHh------------
Q 010542          165 KETDKVRE---EHD-----EDMSIQRAISI----------------------------VFDRRPELRL------------  196 (507)
Q Consensus       165 ~~~~~~~~---~~~-----~~~~~~~~~~~----------------------------~~~~~~~l~~------------  196 (507)
                      ..+.....   ...     ....+.++...                            .+..+..+..            
T Consensus       432 ~~i~~~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~p~~~~~e~s~rs~~~~l~~~~~~~~~l~~~~~~l~~~l~~l  511 (852)
T 2xag_A          432 KKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQEL  511 (852)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             hhhhhhhhhhhhhHHHHHHhHHHHHHHHHHHhhhhcccccccchhhhhhhhhhhhHHHHHHHHhhhhhhhhhHHHHHHhh
Confidence            10000000   000     00000000000                            0000000000            


Q ss_pred             ----------hhhHHHHHHHHHHhhhccccCCcccccccccCcc--ccccCCccccccchHHHHHHHhccCCcccCceeE
Q 010542          197 ----------EGLAHKVLQWYLCRMEGWFAADAETISLKSWDKE--ELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVT  264 (507)
Q Consensus       197 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~~~~~G~~~l~~~l~~g~~i~~~~~V~  264 (507)
                                ......++++++..+....+...+.+++..+...  ....+.+..+.+||+.|+++|.++++|++|++|+
T Consensus       512 ~~~~~~~~~ls~~~~~~l~~~~~~~e~~~~~~l~~lSl~~~~~~~~~~~~g~~~~~~gG~~~L~~aLa~~l~I~Lnt~V~  591 (852)
T 2xag_A          512 EANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVR  591 (852)
T ss_dssp             HHSCCCSCSSCTTHHHHHHHHHHHHHHHHTSCTTTBBTTTTTGGGGGCCBSCCEEETTCTTHHHHHHTTTCCEECSEEEE
T ss_pred             hccCcccccCCHHHHHHHHHHHhhhcccccCChHhhhhhhhhhccccccCCceEEecCcHHHHHHHHHhCCCEEeCCeEE
Confidence                      0001112222222121222334445555444322  1234556788999999999999999999999999


Q ss_pred             EEEeeCCcEEEEEcC------CcEEEcCEEEEecCchhhccC--cccccCCCcHHHHHHHHHcCCcceeEEEEEccCCCC
Q 010542          265 KITRHYIGVKVTVEG------GKTFVADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW  336 (507)
Q Consensus       265 ~I~~~~~~v~v~~~~------g~~~~ad~VI~a~p~~~~~~l--~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~  336 (507)
                      +|...+++|.|++.+      |+++.||+||+|+|+..+..+  .+.|.|+||+...+++..++++...|+++.|+++||
T Consensus       592 ~I~~~~~gV~V~~~~~~~~~~g~~i~AD~VIvTvPl~vLk~l~~~I~F~P~LP~~k~~AI~~l~~g~v~KV~L~F~~~fW  671 (852)
T 2xag_A          592 QVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFW  671 (852)
T ss_dssp             EEEEETTEEEEEEEESSSTTCEEEEEESEEEECCCHHHHHCSSCSSEEESCCCHHHHHHHHHSEECCCEEEEEECSSCCS
T ss_pred             EEEEcCCcEEEEEeecccCCCCeEEECCEEEECCCHHHHHhhhcccccCCCCCHHHHHHHHcCCccceEEEEEEcCCccc
Confidence            999999999988765      568999999999999998763  367899999999999999999999999999999999


Q ss_pred             CC-CccceeecCCC----CceeeeeccccCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhCCC--CCCCcEEE
Q 010542          337 PN-VEFLGVVSDTS----YGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD--ASSPIQYL  409 (507)
Q Consensus       337 ~~-~~~~g~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p~--~~~~~~~~  409 (507)
                      ++ .+.+|.+....    ....++.. .   +..+|++++.+..+..+..++++++++.++++|.++|+.  ..+|..+.
T Consensus       672 ~~~~~~fG~l~~~~~~~~~l~~~~~~-~---~~pvLl~~v~G~~a~~l~~lsdeel~~~~l~~L~~ifG~~~~~~P~~~~  747 (852)
T 2xag_A          672 DPSVNLFGHVGSTTASRGELFLFWNL-Y---KAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETV  747 (852)
T ss_dssp             CTTCCEEEECCSSSTTTTTTCEEEEC-S---SSSEEEEEECHHHHHHGGGSCHHHHHHHHHHHHHHHHCTTTCCCCSEEE
T ss_pred             CCCCCeeeeeccccCCCCceEEEecC-C---CCCEEEEEecCcCHHHHhcCCHHHHHHHHHHHHHHHhCccccCCceEEE
Confidence            85 35566653321    11222222 2   345888888888888888999999999999999999976  34788999


Q ss_pred             eccCCCCCCCCcccccCCCCCchHHHHHhcCCC-------------CceEEeeccccCcCCchhhHHHHHHHHHHHHHHH
Q 010542          410 VSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV-------------DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM  476 (507)
Q Consensus       410 ~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------------~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~  476 (507)
                      +.+|..++++.|+|++..+|......+.+..|+             ++|||||++++..++|||+||+.||.+||++|++
T Consensus       748 vtrW~~dp~s~GsYs~~~pG~~~~~~~~L~~P~~~~~~~p~~~~~~grL~FAGE~Ts~~~~gtveGAi~SG~RAA~~Il~  827 (852)
T 2xag_A          748 VSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIAD  827 (852)
T ss_dssp             ECCTTTCTTTSSSCEECBTTCCTTHHHHTTSCBCCCCSSTTCCCCCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCCcCccccccCCCcchhhHHHHhCccccccccccccCCCCcEEEEehhHhCCCCcCHHHHHHHHHHHHHHHHH
Confidence            999999999999999888988766666666654             6899999999987889999999999999999998


Q ss_pred             HHHH
Q 010542          477 RVLE  480 (507)
Q Consensus       477 ~l~~  480 (507)
                      .+..
T Consensus       828 ~l~~  831 (852)
T 2xag_A          828 QFLG  831 (852)
T ss_dssp             HHHC
T ss_pred             HhhC
Confidence            7743

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=100.00  E-value=6.8e-43  Score=359.50  Aligned_cols=425  Identities=28%  Similarity=0.391  Sum_probs=281.8

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCC-CeEEEEecCCCCCceeEeccC-CCeeeecCCceeeCCCCCCchHHHHHhcCCCe
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRDRVGGRVHTDYS-FGFPVDLGASWLHGVCQENPLAPVISRLGLPL  104 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~  104 (507)
                      +.+||+|||||++||+||++|+++| ++|+|||+++++|||++|... .|+.+|+|++++++. ..+.+.+++.++|+..
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t~~~~~G~~~D~G~~~~~~~-~~~~~~~~~~~lg~~~   85 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDT-LTNPLFLEEAQLSLND   85 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCEEECGGGCEEESSCCEECCT-TTCHHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceeeeecCCCcEEecCCeEEecC-CCChHHHHHHHhCCCC
Confidence            4579999999999999999999999 999999999999999999876 799999999999753 2446777777777621


Q ss_pred             ----eeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcH
Q 010542          105 ----YRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSI  180 (507)
Q Consensus       105 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (507)
                          ..........+..+.                   ....   ......+ ....+.+.++...... .....++.++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~-------------------~~~~---~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~d~s~  141 (516)
T 1rsg_A           86 GRTRFVFDDDNFIYIDEER-------------------GRVD---HDKELLL-EIVDNEMSKFAELEFH-QHLGVSDCSF  141 (516)
T ss_dssp             CCCCEECCCCCCEEEETTT-------------------EECT---TCTTTCH-HHHHHHHHHHHHHHC--------CCBH
T ss_pred             cceeEEECCCCEEEEcCCC-------------------cccc---ccHHHHH-HHHHHHHHHHHHHHhh-hccCCCCCCH
Confidence                111111111111100                   0000   0000111 1111112222111100 0112456788


Q ss_pred             HHHHHHHhccC-hhHHhhhhHHHHHHHHHHhhhccccCCcccccccccCccccccCCccccccchHHHHHHHhccC---C
Q 010542          181 QRAISIVFDRR-PELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGL---D  256 (507)
Q Consensus       181 ~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~g~---~  256 (507)
                      .+++..++... ..+.  ....+++..++..+..+++.++..++...+...  ..+...++.+ ++.++++|.+.+   +
T Consensus       142 ~~~l~~~l~~~~~~l~--~~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~--~~~~~~~~~g-~~~l~~~l~~~l~~~~  216 (516)
T 1rsg_A          142 FQLVMKYLLQRRQFLT--NDQIRYLPQLCRYLELWHGLDWKLLSAKDTYFG--HQGRNAFALN-YDSVVQRIAQSFPQNW  216 (516)
T ss_dssp             HHHHHHHHHHHGGGSC--HHHHHHHHHHHGGGHHHHTBCTTTSBHHHHCCC--CSSCCEEESC-HHHHHHHHHTTSCGGG
T ss_pred             HHHHHHHHHHhhcccC--HHHHHHHHHHHHHHHHHhCCChHHCChHHHHhh--ccCcchhhhC-HHHHHHHHHHhCCCCE
Confidence            88877654421 0000  001122222222223345555556555443221  2233334555 999999998855   5


Q ss_pred             cccCceeEEEEee-CCcEEEEEcCCcEEEcCEEEEecCchhhccC---------cccccCCCcHHHHHHHHHcCCcceeE
Q 010542          257 IRLGHRVTKITRH-YIGVKVTVEGGKTFVADAVVVAVPLGVLKAR---------TIKFEPRLPDWKEAAIDDLGVGIENK  326 (507)
Q Consensus       257 i~~~~~V~~I~~~-~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l---------~~~~~p~l~~~~~~~~~~~~~~~~~~  326 (507)
                      |++|++|++|..+ ++++.|++.+|+++.||+||+|+|+..+...         .+.|.|+||+...+++.+++++...|
T Consensus       217 i~~~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~p~~~l~~~~~~~~~~~~~i~f~P~Lp~~~~~ai~~~~~~~~~K  296 (516)
T 1rsg_A          217 LKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGK  296 (516)
T ss_dssp             EETTCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCCHHHHHGGGSSCSCSTTCCEEESCCCHHHHHHTTSSCCCCCEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEECCCcEEECCEEEECCCHHHhhhccccccccccceEecCCCCHHHHHHHHhCCCCcceE
Confidence            9999999999986 6679999999988999999999999988642         36788999999999999999999999


Q ss_pred             EEEEccCCCCCCC--ccceeecCCC--------------------------------C-ceeeeeccccCCCceEEEEEe
Q 010542          327 IIMHFDKVFWPNV--EFLGVVSDTS--------------------------------Y-GCSYFLNLHKATGHCVLVYMP  371 (507)
Q Consensus       327 ~~l~~~~~~~~~~--~~~g~~~~~~--------------------------------~-~~~~~~~~~~~~~~~~l~~~~  371 (507)
                      +++.|+++||++.  .+.+....+.                                + ....+.+.....+..+|++++
T Consensus       297 v~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~  376 (516)
T 1rsg_A          297 VIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSKSTGVASFMMLM  376 (516)
T ss_dssp             EEEEESSCCSCCSCSEEEECCCCCHHHHHHHHHCCSHHHHHHHC---------CCCTTSSCEEEEEHHHHTSCSEEEEEE
T ss_pred             EEEEeCCCCCCCCCCcEEEeCCCCccchhhcccCcccchhhhcccccccccccccccccCceeEEEeeecCCCcEEEEEe
Confidence            9999999999864  2222211110                                0 001111222344667888999


Q ss_pred             ccchhHHHhcC--CHHHHHH---HHHHHHHHhCC------CCCC---------Cc--EEEeccCCCCCCCCcccccCCCC
Q 010542          372 AGQLARDIEKM--SDEAAAN---FAFTQLKKILP------DASS---------PI--QYLVSHWGTDANSLGSYSYDTVG  429 (507)
Q Consensus       372 ~~~~~~~~~~~--~~ee~~~---~~~~~L~~~~p------~~~~---------~~--~~~~~~w~~~~~~~g~~~~~~~~  429 (507)
                      .+..+..+..+  +++++.+   .++++|.++|+      ++..         |.  .+...+|..+|++.|+|++..||
T Consensus       377 ~g~~a~~~~~l~~~~~~~~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~a~~p~~~~~~~~~W~~dp~~~Gsys~~~~g  456 (516)
T 1rsg_A          377 QAPLTNHIESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDPYSRGAYSACFPG  456 (516)
T ss_dssp             CBTHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTTCCCCEECCC-------CCSCEEEEEEECCTTTCTTTTTCCCCCBC-
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHHHHHhhccccccccCCCCcccccccCCCccceEEEecCCCCCCCCccCCCcCCC
Confidence            99888888888  8888765   47777777664      3322         44  78889999999999999988788


Q ss_pred             Cch-HHHHHhc-CCCCceEEeeccccCcCCchhhHHHHHHHHHHHHHHHHHHHH
Q 010542          430 KSH-DLYERLR-IPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER  481 (507)
Q Consensus       430 ~~~-~~~~~~~-~~~~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~l~~~  481 (507)
                      ... ...+.+. .+.++|||||++++..++|||+||+.||.+||++|++.+..+
T Consensus       457 ~~~~~~~~~l~~~~~~rl~FAGe~ts~~~~g~v~GA~~SG~raA~~i~~~~~~~  510 (516)
T 1rsg_A          457 DDPVDMVVAMSNGQDSRIRFAGEHTIMDGAGCAYGAWESGRREATRISDLLKLE  510 (516)
T ss_dssp             ---CHHHHHHHHCSSSSEEECSTTSCSTTBTSHHHHHHHHHHHHHHHHHHHHGG
T ss_pred             CCHHHHHHHhccCCCCcEEEeccccccCCCccchhHHHHHHHHHHHHHHHhhhh
Confidence            743 3445554 577899999999998778999999999999999999987654

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=100.00  E-value=9.4e-41  Score=340.05  Aligned_cols=424  Identities=30%  Similarity=0.458  Sum_probs=287.6

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCCCCCceeEeccCCCeeeecCCceeeCCC--CCCchHHHHHh-cCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVC--QENPLAPVISR-LGL  102 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~--~~~~~~~l~~~-lg~  102 (507)
                      +.+||+|||||++||+||+.|++.|+ +|+|+|+++++||++++....|+.+|.|++++++..  ..+.+.+++++ +|+
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~lgl   82 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKL   82 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETTEEEESSCCEEEEESSSSCCTHHHHHHTTSCC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceeecccCCcEEeeCCeEEeccCCCCCCHHHHHHHhhcCC
Confidence            46899999999999999999999998 899999999999999998889999999999997432  34568999999 999


Q ss_pred             CeeeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHH---HHHHHHHHHHH-hhcCCCCC
Q 010542          103 PLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEA---FESILKETDKV-REEHDEDM  178 (507)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~  178 (507)
                      ...........                        ...+..++..++..........   +..+....... .....+++
T Consensus        83 ~~~~~~~~~~~------------------------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (472)
T 1b37_A           83 RNFRSDFDYLA------------------------QNVYKEDGGVYDEDYVQKRIELADSVEEMGEKLSATLHASGRDDM  138 (472)
T ss_dssp             CEEECCCTTGG------------------------GCEECSSSSBCCHHHHHHHHHHHHHHHHHHHHHHHTSCTTCTTCC
T ss_pred             ceeeccCcccc------------------------ceeEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccchhh
Confidence            86432211100                        0111112222222211111111   11111111111 11123445


Q ss_pred             cHHH--HHHHHhccChhHHhhhhHHHHHHHHHHhhhccccCCcccccccccCccc---cccCCccc--cccchHHHHHHH
Q 010542          179 SIQR--AISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEE---LLPGGHGL--MVRGYLPVINTL  251 (507)
Q Consensus       179 ~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~---~~~~~~~~--~~~G~~~l~~~l  251 (507)
                      ++.+  ++........    ...-+.+++.+...  ..++.+....++..+....   ...+...+  ..+|++.++++|
T Consensus       139 s~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l  212 (472)
T 1b37_A          139 SILAMQRLNEHQPNGP----ATPVDMVVDYYKFD--YEFAEPPRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYL  212 (472)
T ss_dssp             BHHHHHHHHHTSSSSC----CSHHHHHHHHHHTH--HHHSSCGGGBBSTTTSSCHHHHHHCSEEEEECCTTCTTHHHHHH
T ss_pred             hHHHHHHHhhhccccc----ccHHHHHHHHHHHh--hhhcccccccchhhccccccccccCCceeeeecCCcHHHHHHHH
Confidence            5543  2211110000    00001122222211  1123344444443322110   01111122  368999999998


Q ss_pred             hcc-------------CCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHH
Q 010542          252 AKG-------------LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDD  318 (507)
Q Consensus       252 ~~g-------------~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~  318 (507)
                      .+.             .+|+++++|++|..++++++|++.+|++++||+||+|+|+..+..+++.+.|+||+...+++.+
T Consensus       213 ~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~l~~~~~~~~p~Lp~~~~~ai~~  292 (472)
T 1b37_A          213 AGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQ  292 (472)
T ss_dssp             HHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHH
T ss_pred             HHhccccccccccccccEEEcCCEEEEEEEcCCcEEEEECCCCEEEcCEEEEecCHHHhccCCeeECCCCCHHHHHHHHh
Confidence            753             4799999999999999999999999989999999999999998876677889999999999999


Q ss_pred             cCCcceeEEEEEccCCCCCCCccceeec--CCC-Cceeeeeccc-cCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHH
Q 010542          319 LGVGIENKIIMHFDKVFWPNVEFLGVVS--DTS-YGCSYFLNLH-KATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQ  394 (507)
Q Consensus       319 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~--~~~-~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~  394 (507)
                      +++....|+++.|+.++|++....+++.  +.. .....+.... ..++..++++++.+..+..|..++++++.+.++++
T Consensus       293 ~~~~~~~kv~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~a~~~~~~~~~e~~~~~l~~  372 (472)
T 1b37_A          293 FDMAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQV  372 (472)
T ss_dssp             SEEECEEEEEEECSSCCSCCSTTCSEEEECCSSTTSSCEEEECTTTSTTCCEEEEEEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             cCCcceeEEEEECCCcCCCCCCCcceEEecccCCccceeeecccCCCCCCCEEEEEechHHHHHHHhCCHHHHHHHHHHH
Confidence            9999999999999999998632112211  111 1111222111 12345666666666556678888999999999999


Q ss_pred             HHHhCCC--CCCCcEEEeccCCCCCCCCcccccCCCCCchHHHHHhcCCCCceEEeeccccCcCCchhhHHHHHHHHHHH
Q 010542          395 LKKILPD--ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAE  472 (507)
Q Consensus       395 L~~~~p~--~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA~~SG~~aA~  472 (507)
                      |++++|+  ..+|..+.+.+|..++++.|+|....+|+.....+.+.+|++||||||+++++.++|+|+||+.||.+||+
T Consensus       373 L~~~~Pg~~~~~~~~~~~~~W~~~~~~~G~~~~~~~g~~~~~~~~l~~p~~~l~fAG~~t~~~~~g~v~GA~~SG~~aA~  452 (472)
T 1b37_A          373 LRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAE  452 (472)
T ss_dssp             HHHHCTTSCCCCCSEEECCCTTTCTTTSSSEEECBTTCCHHHHHHHHCCBTTEEECSGGGCTTTTTSHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCCCceEEecccCCCCCCCcccCCCCCCCChhHHHHHhccCCcEEEeecccCCCCCCchhHHHHHHHHHHH
Confidence            9999976  45778888899999999999998777888766678899999999999999998777999999999999999


Q ss_pred             HHHHHHHH
Q 010542          473 DCRMRVLE  480 (507)
Q Consensus       473 ~i~~~l~~  480 (507)
                      +|++.+..
T Consensus       453 ~i~~~l~~  460 (472)
T 1b37_A          453 ILINCAQK  460 (472)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99987754

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=100.00  E-value=2.3e-40  Score=339.85  Aligned_cols=431  Identities=21%  Similarity=0.287  Sum_probs=284.9

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEecc--CCCeeeecCCceeeCCCCCCchHHHHHhcCCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY--SFGFPVDLGASWLHGVCQENPLAPVISRLGLP  103 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~--~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~  103 (507)
                      ...+||+|||||++||+||+.|+++|++|+|+|+++++||++.+..  ..|+.+|.|+++++.  ....+.++++++|+.
T Consensus        31 ~~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~g~~  108 (498)
T 2iid_A           31 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPE--KHRIVREYIRKFDLR  108 (498)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEET--TCHHHHHHHHHTTCC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccCCCCchhhcCcccccc--hHHHHHHHHHHhCCC
Confidence            4578999999999999999999999999999999999999998876  568999999999863  355788999999998


Q ss_pred             eeeecC--CCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHH----hhcCCCC
Q 010542          104 LYRTSG--DNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKV----REEHDED  177 (507)
Q Consensus       104 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  177 (507)
                      ......  ........+.......   ....+....+.+...........+   ....+.++...+...    .....++
T Consensus       109 ~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (498)
T 2iid_A          109 LNEFSQENDNAWYFIKNIRKKVGE---VKKDPGLLKYPVKPSEAGKSAGQL---YEESLGKVVEELKRTNCSYILNKYDT  182 (498)
T ss_dssp             EEEECSCCTTSEEEETTEEEEHHH---HHHCGGGGCCCCCGGGTTCCHHHH---HHHHTHHHHHHHHHSCHHHHHHHHTT
T ss_pred             ceeecccCCccEEEeCCeeecccc---cccCccccccCCCccccCCCHHHH---HHHHHHHHHHHHhhccHHHHHHHhhh
Confidence            643321  2222221111100000   000000000000000000000111   111111211111110    0011234


Q ss_pred             CcHHHHHHHHhccChhHHhhhhHHHHHHHHHHhhhc---cccCCcccccccccCccccccCCccccccchHHHHHHHhcc
Q 010542          178 MSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEG---WFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKG  254 (507)
Q Consensus       178 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~g  254 (507)
                      .++.+++....         .++...++.+...+..   ++......+...   ...........+.+|++.++++|.+.
T Consensus       183 ~s~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~gG~~~l~~~l~~~  250 (498)
T 2iid_A          183 YSTKEYLIKEG---------DLSPGAVDMIGDLLNEDSGYYVSFIESLKHD---DIFAYEKRFDEIVDGMDKLPTAMYRD  250 (498)
T ss_dssp             SBHHHHHHHTS---------CCCHHHHHHHHHHTTCGGGTTSBHHHHHHHH---HHHTTCCCEEEETTCTTHHHHHHHHH
T ss_pred             hhHHHHHHHcc---------CCCHHHHHHHHHhcCcccchhHHHHHHHHHH---hccccCcceEEeCCcHHHHHHHHHHh
Confidence            56666665321         1222222222111110   000000000000   00001223457889999999999886


Q ss_pred             C--CcccCceeEEEEeeCCcEEEEEcCCc----EEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcceeEEE
Q 010542          255 L--DIRLGHRVTKITRHYIGVKVTVEGGK----TFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKII  328 (507)
Q Consensus       255 ~--~i~~~~~V~~I~~~~~~v~v~~~~g~----~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~~  328 (507)
                      +  +|++|++|++|..++++|.|++.+|+    +++||+||+|+|+..+.  .+.|.|+||+...+++.++++.+..|++
T Consensus       251 l~~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~ad~vI~t~p~~~~~--~i~f~p~Lp~~~~~ai~~l~~~~~~kv~  328 (498)
T 2iid_A          251 IQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVR--LIKFNPPLLPKKAHALRSVHYRSGTKIF  328 (498)
T ss_dssp             TGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHT--TSEEESCCCHHHHHHHHHCCEECEEEEE
T ss_pred             cccccccCCEEEEEEECCCeEEEEEecCCcccceEEeCEEEECCChHHHh--heecCCCCCHHHHHHHHhCCCcceeEEE
Confidence            5  89999999999999999999888775    48999999999998875  4567789999999999999999999999


Q ss_pred             EEccCCCCCCCccceee-c-CCCCceeeeeccccCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhCCCCCC--
Q 010542          329 MHFDKVFWPNVEFLGVV-S-DTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASS--  404 (507)
Q Consensus       329 l~~~~~~~~~~~~~g~~-~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p~~~~--  404 (507)
                      +.|+.+||++.++.|.. . .......++.+...+++..+|++++.+..+..+..++++++.+.++++|+++++....  
T Consensus       329 l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~s~~~p~g~~~L~~~~~g~~a~~~~~~~~~~~~~~~l~~L~~~~g~~~~~~  408 (498)
T 2iid_A          329 LTCTTKFWEDDGIHGGKSTTDLPSRFIYYPNHNFTNGVGVIIAYGIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDI  408 (498)
T ss_dssp             EEESSCGGGGGTCCSSEEEESSTTCEEECCSSCCTTSCEEEEEEEEHHHHHTTTTSCHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred             EEeCCCCccCCCccCCcccCCCCcceEEECCCCCCCCCcEEEEEeCCccHhhhhcCCHHHHHHHHHHHHHHHcCCChhhh
Confidence            99999999865443321 1 1122223333333466677888888777777788899999999999999999973211  


Q ss_pred             ---CcEEEeccCCCCCCCCcccccCCCCCchHHHHHhcCCCCceEEeeccccCcCCchhhHHHHHHHHHHHHHHHHHH
Q 010542          405 ---PIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL  479 (507)
Q Consensus       405 ---~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~l~  479 (507)
                         ...+.+.+|..++++.|+|.+..+++.....+.+.+|.+||||||++++..+ |||+||+.||.+||++|++.+.
T Consensus       409 ~~~~~~~~~~~W~~~p~~~G~~~~~~~~~~~~~~~~l~~p~~~l~fAGe~t~~~~-g~~~GAi~SG~raA~~i~~~l~  485 (498)
T 2iid_A          409 QSFCYPSVIQKWSLDKYAMGGITTFTPYQFQHFSDPLTASQGRIYFAGEYTAQAH-GWIDSTIKSGLRAARDVNLASE  485 (498)
T ss_dssp             HHHEEEEEEEEGGGCTTTCSSEECCCTTHHHHHHHHHHCCBTTEEECSGGGSSSS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcCccEEEecCCCCCCCceeeecCCcchHHHHHHHhCCCCcEEEEEcccccCC-cCHHHHHHHHHHHHHHHHHHhc
Confidence               1236688999999999999877788776777888999999999999998655 8999999999999999998774

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=100.00  E-value=5.5e-40  Score=331.05  Aligned_cols=402  Identities=23%  Similarity=0.301  Sum_probs=277.8

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCC---CeeeecCCceeeCCCCCCchHHHHHhcCCCe
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSF---GFPVDLGASWLHGVCQENPLAPVISRLGLPL  104 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~---g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~  104 (507)
                      ++||+|||||++||+||++|+++|++|+|||+++++||++.+....   |..++.|++++... ....+.++++++|++.
T Consensus         1 ~~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~cipg~~~~~g~~~~~~~-~~~~~~~~~~~~g~~~   79 (431)
T 3k7m_X            1 MYDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRK-HHPRLAAELDRYGIPT   79 (431)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEEECSSSTTCEEESSCCCBCTT-TCHHHHHHHHHHTCCE
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeecceeccCCCCceEecCCeeeCCC-CcHHHHHHHHHhCCee
Confidence            3799999999999999999999999999999999999999887666   89999999988632 1456788899999986


Q ss_pred             eeecCCCcccc-cccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhc--------CC
Q 010542          105 YRTSGDNSVLY-DHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREE--------HD  175 (507)
Q Consensus       105 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~  175 (507)
                      ..........+ ..+..                   +...  ...+..........+.++......+...        ..
T Consensus        80 ~~~~~~~~~~~~~~~~~-------------------~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  138 (431)
T 3k7m_X           80 AAASEFTSFRHRLGPTA-------------------VDQA--FPIPGSEAVAVEAATYTLLRDAHRIDLEKGLENQDLED  138 (431)
T ss_dssp             EECCCCCEECCBSCTTC-------------------CSSS--SCCCGGGHHHHHHHHHHHHHHHTTCCTTTCTTSSSCGG
T ss_pred             eecCCCCcEEEEecCCe-------------------ecCC--CCCCHHHHHHHHHHHHHHHHHHHhcCCCCCccCcchhh
Confidence            55433322222 11000                   0000  0012222233333334443333222110        00


Q ss_pred             CCCcHHHHHHHHhccChhHHhhhhHHHHHHHHHHh-hhccccCCcccccccccCcccccc---------CCccccccchH
Q 010542          176 EDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWDKEELLP---------GGHGLMVRGYL  245 (507)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~---------~~~~~~~~G~~  245 (507)
                      .+.++.+++....          ..... ..++.. ....++.+...++...+.......         .....+.+|++
T Consensus       139 ~d~s~~~~l~~~~----------~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  207 (431)
T 3k7m_X          139 LDIPLNEYVDKLD----------LPPVS-RQFLLAWAWNMLGQPADQASALWMLQLVAAHHYSILGVVLSLDEVFSNGSA  207 (431)
T ss_dssp             GCSBHHHHHHHHT----------CCHHH-HHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSCHHHHHHTCCEEETTCTH
T ss_pred             hcCCHHHHHHhcC----------CCHHH-HHHHHHHHHHhcCCChhhhhHHHHHHHHHhcCCccceeecchhhhcCCcHH
Confidence            1266777665321          11111 111222 233455555555544332111111         11115689999


Q ss_pred             HHHHHHhccC-CcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcce
Q 010542          246 PVINTLAKGL-DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIE  324 (507)
Q Consensus       246 ~l~~~l~~g~-~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~  324 (507)
                      .+++++.+.. +|++|++|++|+.+++++.|++.+|++++||+||+|+|+..+..  +.+.|++|+...+++..+.+...
T Consensus       208 ~l~~~~~~~~g~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~~~l~~--i~~~p~l~~~~~~~~~~~~~~~~  285 (431)
T 3k7m_X          208 DLVDAMSQEIPEIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTWRR--IVFTPALPERRRSVIEEGHGGQG  285 (431)
T ss_dssp             HHHHHHHTTCSCEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCGGGGGG--SEEESCCCHHHHHHHHHCCCCCE
T ss_pred             HHHHHHHhhCCceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCcchHhh--eeeCCCCCHHHHHHHHhCCCcce
Confidence            9999998622 99999999999999999999999998899999999999998874  46789999999999999999888


Q ss_pred             eEEEEEccCCCCCCCccceeecCCCCceeeeeccccCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhCCCCCC
Q 010542          325 NKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASS  404 (507)
Q Consensus       325 ~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p~~~~  404 (507)
                      .++.+.|+.+++   ++.+  ..+......+.......+..+++.+..+..   +...+.    +.+.+.|++++|+.. 
T Consensus       286 ~kv~~~~~~~~~---~i~~--~~d~~~~~~~~~~~~~~~~~~l~~~~~g~~---~~~~~~----~~~~~~l~~~~~~~~-  352 (431)
T 3k7m_X          286 LKILIHVRGAEA---GIEC--VGDGIFPTLYDYCEVSESERLLVAFTDSGS---FDPTDI----GAVKDAVLYYLPEVE-  352 (431)
T ss_dssp             EEEEEEEESCCT---TEEE--EBSSSSSEEEEEEECSSSEEEEEEEEETTT---CCTTCH----HHHHHHHHHHCTTCE-
T ss_pred             EEEEEEECCCCc---CceE--cCCCCEEEEEeCcCCCCCCeEEEEEecccc---CCCCCH----HHHHHHHHHhcCCCC-
Confidence            999999998874   2333  122222223333222245667777776554   222222    346678888998765 


Q ss_pred             CcEEEeccCCCCCCCCcccccCCCCCchHHHHHhcCCCCceEEeeccccCcCCchhhHHHHHHHHHHHHHHHH
Q 010542          405 PIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR  477 (507)
Q Consensus       405 ~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~  477 (507)
                      |..+..++|..++++.|+|++..||+.....+.+.+|.++|||||++++..++|||+||+.||.+||++|+..
T Consensus       353 ~~~~~~~~W~~d~~~~G~~~~~~~g~~~~~~~~l~~p~g~~~fAGe~t~~~~~g~~~GA~~sg~raa~~i~~~  425 (431)
T 3k7m_X          353 VLGIDYHDWIADPLFEGPWVAPRVGQFSRVHKELGEPAGRIHFVGSDVSLEFPGYIEGALETAECAVNAILHS  425 (431)
T ss_dssp             EEEEECCCTTTCTTTSSSSCCCCTTTTTTSSGGGGSCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHHC
T ss_pred             ccEeEecccCCCCCCCCCCCCcCCCCCcccHHHHhCCCCcEEEEehhhhccCCeEehHHHHHHHHHHHHHHhh
Confidence            7888889999999999999988899877888889999999999999999888899999999999999999863

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=100.00  E-value=1.4e-39  Score=332.05  Aligned_cols=406  Identities=18%  Similarity=0.262  Sum_probs=278.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCC------CeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhc
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDAS------FKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRL  100 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G------~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~l  100 (507)
                      +++||+|||||++||+||++|+++|      ++|+|||+++++||+++|....|+.+|.|++++.+  .+..+.++++++
T Consensus         4 ~~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~--~~~~~~~l~~~l   81 (470)
T 3i6d_A            4 GKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGPDSFLE--RKKSAPQLVKDL   81 (470)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEECCTTCCEESSCCCEET--TCTHHHHHHHHT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEEeccCCEEeccChhhhhh--CCHHHHHHHHHc
Confidence            4589999999999999999999999      99999999999999999988899999999998874  356789999999


Q ss_pred             CCCeeeec--CCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHH-------HHHHHHHHHHHHHh
Q 010542          101 GLPLYRTS--GDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVG-------EAFESILKETDKVR  171 (507)
Q Consensus       101 g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~  171 (507)
                      |++.....  ....+++..+.... ++.                ......+..+.....       ..+....... ...
T Consensus        82 gl~~~~~~~~~~~~~~~~~g~~~~-~~~----------------~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  143 (470)
T 3i6d_A           82 GLEHLLVNNATGQSYVLVNRTLHP-MPK----------------GAVMGIPTKIAPFVSTGLFSLSGKARAAMDFI-LPA  143 (470)
T ss_dssp             TCCTTEEECCCCCEEEECSSCEEE-CCC-------------------------------------CCSHHHHHHHH-SCC
T ss_pred             CCcceeecCCCCccEEEECCEEEE-CCC----------------CcccCCcCchHHhhccCcCCHHHHHHHhcCcc-cCC
Confidence            99743221  22222222211000 000                000000000000000       0001111111 011


Q ss_pred             hcCCCCCcHHHHHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCccc---------cc--------
Q 010542          172 EEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEE---------LL--------  233 (507)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~---------~~--------  233 (507)
                      ....++.++.++++.           .++.+..+.++.++ .+.++.+++.+++.......         ..        
T Consensus       144 ~~~~~~~s~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (470)
T 3i6d_A          144 SKTKDDQSLGEFFRR-----------RVGDEVVENLIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILGMKKTRP  212 (470)
T ss_dssp             CSSSSCCBHHHHHHH-----------HSCHHHHHHTHHHHHHHTTCSCTTTBBHHHHCGGGCC-----------------
T ss_pred             CCCCCCcCHHHHHHH-----------hcCHHHHHHhccchhcEEecCCHHHhhHHHHHHHHHHHHHhcCcHHHHHHhhcc
Confidence            223457788888763           34556666666654 45777777777754322110         00        


Q ss_pred             -----------cCCccccccchHHHHHHHhccC---CcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhcc
Q 010542          234 -----------PGGHGLMVRGYLPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKA  299 (507)
Q Consensus       234 -----------~~~~~~~~~G~~~l~~~l~~g~---~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~  299 (507)
                                 .+....+.+|++.++++|.+.+   +|+++++|++|+.+++++.|++.+|+++.||+||+|+|+..+.+
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vi~a~p~~~~~~  292 (470)
T 3i6d_A          213 QGSGQQLTAKKQGQFQTLSTGLQTLVEEIEKQLKLTKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPHKAAAG  292 (470)
T ss_dssp             --------------EEEETTCTHHHHHHHHHTCCSEEEECSCCEEEEEECSSSEEEEESSSCEEEESEEEECSCHHHHHH
T ss_pred             ccccccccccCCceEEEeCChHHHHHHHHHHhcCCCEEEeCCceEEEEEcCCeEEEEECCCCEEECCEEEECCCHHHHHH
Confidence                       1234567899999999999866   79999999999999999999999998999999999999998775


Q ss_pred             CcccccCCCcHHHHHHHHHcCCcceeEEEEEccCCCCCCC-ccceeecCCCCc---e-eeee----ccccCCCceEEEEE
Q 010542          300 RTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV-EFLGVVSDTSYG---C-SYFL----NLHKATGHCVLVYM  370 (507)
Q Consensus       300 l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~g~~~~~~~~---~-~~~~----~~~~~~~~~~l~~~  370 (507)
                      ++.  .++    ..+.+..+++.+..++++.|++++|+.. ...|++.+....   . ..+.    +...+++..+++++
T Consensus       293 l~~--~~~----~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~  366 (470)
T 3i6d_A          293 MLS--ELP----AISHLKNMHSTSVANVALGFPEGSVQMEHEGTGFVISRNSDFAITACTWTNKKWPHAAPEGKTLLRAY  366 (470)
T ss_dssp             HTT--TST----THHHHHTCEEEEEEEEEEEESSTTCCCSSCSSEEEECSTTCCSEEEEEEHHHHCGGGSCTTCEEEEEE
T ss_pred             HcC--Cch----hhHHHhcCCCCceEEEEEEECchhcCCCCCCeEEEccCCCCCCceEEEEEcCcCCCcCCCCCEEEEEE
Confidence            432  222    2577889999999999999999999743 345655443211   0 1111    22345667788888


Q ss_pred             eccchhHHHhcCCHHHHHHHHHHHHHHhCCCCCCCcEEEeccCCCCCCCCcccccCCCCCc---hHHHHHhcCCCCceEE
Q 010542          371 PAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKS---HDLYERLRIPVDNLFF  447 (507)
Q Consensus       371 ~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~l~~  447 (507)
                      +.+.....+..++++++++.++++|.+++|...+|..+.+++|...   .+.|   .+|..   ....+.+.++.+|||+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~p~~~~~~~w~~a---~p~~---~~g~~~~~~~~~~~l~~~~~~l~~  440 (470)
T 3i6d_A          367 VGKAGDESIVDLSDNDIINIVLEDLKKVMNINGEPEMTCVTRWHES---MPQY---HVGHKQRIKELREALASAYPGVYM  440 (470)
T ss_dssp             ECCSSCCGGGTSCHHHHHHHHHHHHGGGSCCCSCCSEEEEEEEEEE---EEEC---BTTHHHHHHHHHHHHHHHSTTEEE
T ss_pred             ECCCCCccccCCCHHHHHHHHHHHHHHHhCCCCCceEEEEEEcCCc---cCCC---CCCHHHHHHHHHHHHHhhCCCEEE
Confidence            7776666778899999999999999999998778888889999542   2222   23432   3344556677899999


Q ss_pred             eeccccCcCCchhhHHHHHHHHHHHHHHHHH
Q 010542          448 AGEATSMSYPGSVHGAFSTGLMAAEDCRMRV  478 (507)
Q Consensus       448 aG~~~~~~~~g~~egA~~SG~~aA~~i~~~l  478 (507)
                      ||+++.+   .++++|+.||.++|++|++.|
T Consensus       441 aG~~~~g---~gv~~a~~sG~~aA~~i~~~l  468 (470)
T 3i6d_A          441 TGASFEG---VGIPDCIDQGKAAVSDALTYL  468 (470)
T ss_dssp             CSTTTSC---CSHHHHHHHHHHHHHHHHHHH
T ss_pred             EeecCCC---CCHHHHHHHHHHHHHHHHHHh
Confidence            9998754   579999999999999998876

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=100.00  E-value=1.2e-38  Score=326.29  Aligned_cols=424  Identities=21%  Similarity=0.246  Sum_probs=270.5

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccC-----------------CCeeeecCCceeeCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS-----------------FGFPVDLGASWLHGV   87 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~-----------------~g~~~d~G~~~~~~~   87 (507)
                      ..+.+||+|||||++||+||+.|+++|++|+|||+++++||++++...                 .|..+|.|+++++. 
T Consensus         8 ~~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-   86 (489)
T 2jae_A            8 VKGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDLSGETQKCTFSEGHFYNVGATRIPQ-   86 (489)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEETTCEEECTTSCEEECCCCTTCEEESSCCCEET-
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCceeeeccCcccccccchhhhhcccCCCcCCcchhhccc-
Confidence            345789999999999999999999999999999999999999988654                 57789999998874 


Q ss_pred             CCCCchHHHHHhcCCCeeeecCC--Ccccc-cccchhhhhhhhhhHHhhhcccceeecCCCCccCHH-HHHHHHHHHHHH
Q 010542           88 CQENPLAPVISRLGLPLYRTSGD--NSVLY-DHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQE-LVTKVGEAFESI  163 (507)
Q Consensus        88 ~~~~~~~~l~~~lg~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  163 (507)
                       .+ .+.++++++|++.......  ...++ ..+. .  .                   .+...... ........+..+
T Consensus        87 -~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--~-------------------~g~~~~~~~~~~~~~~~~~~l  142 (489)
T 2jae_A           87 -SH-ITLDYCRELGVEIQGFGNQNANTFVNYQSDT-S--L-------------------SGQSVTYRAAKADTFGYMSEL  142 (489)
T ss_dssp             -TS-THHHHHHHHTCCEEEECCCCTTSEEECCCSS-T--T-------------------TTCCEEHHHHHHHHHHHHHHH
T ss_pred             -HH-HHHHHHHHcCCceEEccccCCCceEEecCCc-c--c-------------------CCccccHHHHhhhhhccHHHH
Confidence             33 7899999999986543321  12221 1100 0  0                   01111100 000000011111


Q ss_pred             HHHHHHHhh-cC----CCCCcHHHHHHHHhccChhHHhhhhHHHHHHHHHHh-hhc-cccC-----CcccccccccCcc-
Q 010542          164 LKETDKVRE-EH----DEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEG-WFAA-----DAETISLKSWDKE-  230 (507)
Q Consensus       164 ~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~-~~~~-----~~~~~s~~~~~~~-  230 (507)
                      ......... ..    .++.++.+++..+-...   ....+.......++.. ... +.+.     +...++...+... 
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (489)
T 2jae_A          143 LKKATDQGALDQVLSREDKDALSEFLSDFGDLS---DDGRYLGSSRRGYDSEPGAGLNFGTEKKPFAMQEVIRSGIGRNF  219 (489)
T ss_dssp             HHHHHHHTTTTTTSCHHHHHHHHHHHHHHTTCC---TTSCCCCCGGGCEEECCCBTTCCCEECCCCCHHHHHHHTTTTTG
T ss_pred             HHHHHhccccccccchhhHHHHHHHHHHhhhhh---hccccccccchhhccCCCcccccCCCCCCcCHHHHhhhhHHHHH
Confidence            111111000 00    01124444444310000   0000000000000000 000 0000     1111111111100 


Q ss_pred             -----ccccCCccccccchHHHHHHHhcc---CCcccCceeEEEEeeCCcEEEEEcCC---cEEEcCEEEEecCchhhcc
Q 010542          231 -----ELLPGGHGLMVRGYLPVINTLAKG---LDIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAVPLGVLKA  299 (507)
Q Consensus       231 -----~~~~~~~~~~~~G~~~l~~~l~~g---~~i~~~~~V~~I~~~~~~v~v~~~~g---~~~~ad~VI~a~p~~~~~~  299 (507)
                           ........++.+|++.++++|.+.   .+|++|++|++|..++++|+|++.+|   +++.||+||+|+|+..+..
T Consensus       220 ~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~~~~ad~vI~a~p~~~l~~  299 (489)
T 2jae_A          220 SFDFGYDQAMMMFTPVGGMDRIYYAFQDRIGTDNIVFGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICTIPPHLVGR  299 (489)
T ss_dssp             GGGGCTTTSSSEEEETTCTTHHHHHHHHHHCGGGEETTCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCHHHHTT
T ss_pred             hhhhccccCccEEeecCCHHHHHHHHHHhcCCCeEEECCEEEEEEEcCCeEEEEEecCCeEEEEECCEEEECCCHHHHHh
Confidence                 011234567899999999999874   57999999999999999999988877   5899999999999998765


Q ss_pred             CcccccCCCcHHHHHHHHHcCCcceeEEEEEccCCCCCCC-ccceee-cCCCCce-eeeeccccCCCceEEE-EEeccch
Q 010542          300 RTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV-EFLGVV-SDTSYGC-SYFLNLHKATGHCVLV-YMPAGQL  375 (507)
Q Consensus       300 l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~g~~-~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~~  375 (507)
                      +.  +  ++|+...+.+.++++.+..++++.|++++|++. ++.|.+ ....... .++.+...+....+++ +++.+..
T Consensus       300 l~--~--~l~~~~~~~l~~~~~~~~~kv~l~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~g~~  375 (489)
T 2jae_A          300 LQ--N--NLPGDVLTALKAAKPSSSGKLGIEYSRRWWETEDRIYGGASNTDKDISQIMFPYDHYNSDRGVVVAYYSSGKR  375 (489)
T ss_dssp             SE--E--CCCHHHHHHHHTEECCCEEEEEEEESSCHHHHTTCCCSCEEEESSTTCEEECCSSSTTSSCEEEEEEEEETHH
T ss_pred             Cc--c--CCCHHHHHHHHhCCCccceEEEEEeCCCCccCCCCcccccccCCCCceEEEeCCCCCCCCCCEEEEEeeCCch
Confidence            32  2  688888999999999999999999999999754 445432 2221122 2222221111234444 5777777


Q ss_pred             hHHHhcCCHHHHHHHHHHHHHHhCCC-C-CCCcEEEeccCCCCCCCCcccccCC------CCCchHHHHHhcCCCCceEE
Q 010542          376 ARDIEKMSDEAAANFAFTQLKKILPD-A-SSPIQYLVSHWGTDANSLGSYSYDT------VGKSHDLYERLRIPVDNLFF  447 (507)
Q Consensus       376 ~~~~~~~~~ee~~~~~~~~L~~~~p~-~-~~~~~~~~~~w~~~~~~~g~~~~~~------~~~~~~~~~~~~~~~~~l~~  447 (507)
                      ...|..++++++++.++++|++++|. . ..+......+|..+++..|+|....      ++......+.+.+|.+||||
T Consensus       376 ~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~W~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~f  455 (489)
T 2jae_A          376 QEAFESLTHRQRLAKAIAEGSEIHGEKYTRDISSSFSGSWRRTKYSESAWANWAGSGGSHGGAATPEYEKLLEPVDKIYF  455 (489)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHHHCGGGGSSEEEEEEEEGGGSTTTSCSSCEETTC-------CCHHHHHHTSCBTTEEE
T ss_pred             hhhhhcCCHHHHHHHHHHHHHHHcCcchhhhccccEEEEcCCCCCCCCcchhcccccCCCcccchhhHHHHhCCCCcEEE
Confidence            77888999999999999999999987 3 4566677788999999988887554      67666677888899999999


Q ss_pred             eeccccCcCCchhhHHHHHHHHHHHHHHHHHHHH
Q 010542          448 AGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER  481 (507)
Q Consensus       448 aG~~~~~~~~g~~egA~~SG~~aA~~i~~~l~~~  481 (507)
                      ||++++. +.++++||+.||.+||++|+..+..+
T Consensus       456 aG~~~~~-~~~~v~gAi~sg~~aA~~i~~~l~~~  488 (489)
T 2jae_A          456 AGDHLSN-AIAWQHGALTSARDVVTHIHERVAQE  488 (489)
T ss_dssp             CSGGGBS-STTSHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             eEHHhcc-CccHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999874 44899999999999999999887643

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=100.00  E-value=5.8e-39  Score=327.91  Aligned_cols=409  Identities=20%  Similarity=0.223  Sum_probs=271.4

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCe
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL  104 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~  104 (507)
                      ....+||+|||||++||+||+.|+++|++|+|||+++++||+++|....|+.+|.|++++.+  .+..+.++++++|+..
T Consensus        13 ~~~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~~~g~~~~~~--~~~~~~~~~~~~gl~~   90 (478)
T 2ivd_A           13 RTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLD--REPATRALAAALNLEG   90 (478)
T ss_dssp             ----CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETTEEEESSCCCEET--TCHHHHHHHHHTTCGG
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeeccCCeeeecChhhhhh--hhHHHHHHHHHcCCcc
Confidence            35578999999999999999999999999999999999999999998899999999999974  3567889999999963


Q ss_pred             eee--c--CCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcH
Q 010542          105 YRT--S--GDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSI  180 (507)
Q Consensus       105 ~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (507)
                      ...  .  ....+++.++.... ++....         .++..  ..+.  +    ...+ +++...........++.++
T Consensus        91 ~~~~~~~~~~~~~~~~~g~~~~-~p~~~~---------~~~~~--~~~~--~----~~~~-~~~~~~~~~~~~~~~~~s~  151 (478)
T 2ivd_A           91 RIRAADPAAKRRYVYTRGRLRS-VPASPP---------AFLAS--DILP--L----GARL-RVAGELFSRRAPEGVDESL  151 (478)
T ss_dssp             GEECSCSSCCCEEEEETTEEEE-CCCSHH---------HHHTC--SSSC--H----HHHH-HHHGGGGCCCCCTTCCCBH
T ss_pred             eeeecCccccceEEEECCEEEE-CCCCHH---------HhccC--CCCC--H----HHHH-HHhhhhhcCCCCCCCCCCH
Confidence            211  1  11222222111000 000000         00000  0000  0    0001 1111110001112457789


Q ss_pred             HHHHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCcc----------------------------c
Q 010542          181 QRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKE----------------------------E  231 (507)
Q Consensus       181 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~----------------------------~  231 (507)
                      .++++..           +++++.+.++.++ ...++.+++.+++..+...                            .
T Consensus       152 ~~~l~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (478)
T 2ivd_A          152 AAFGRRH-----------LGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPA  220 (478)
T ss_dssp             HHHHHHH-----------TCHHHHHHTHHHHHHHHHCCCTTTBBHHHHCHHHHHHHHHHSSHHHHHHHHHHHHTCC----
T ss_pred             HHHHHHh-----------hCHHHHHHHHHHHhceeecCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHHhhhccccccCcc
Confidence            9888742           4555666655554 3466666666664432100                            0


Q ss_pred             ccc----CCccccccchHHHHHHHhc--cCCcccCceeEEEEeeCCcEEEEE---cCCcEEEcCEEEEecCchhhccCcc
Q 010542          232 LLP----GGHGLMVRGYLPVINTLAK--GLDIRLGHRVTKITRHYIGVKVTV---EGGKTFVADAVVVAVPLGVLKARTI  302 (507)
Q Consensus       232 ~~~----~~~~~~~~G~~~l~~~l~~--g~~i~~~~~V~~I~~~~~~v~v~~---~~g~~~~ad~VI~a~p~~~~~~l~~  302 (507)
                      ...    ++..++.+|++.++++|.+  |++|+++++|++|..+++++.|++   .+|+++.||+||+|+|+..+..+  
T Consensus       221 ~~~~~~~~~~~~~~gG~~~l~~~l~~~lg~~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~ad~vV~a~~~~~~~~l--  298 (478)
T 2ivd_A          221 GTAPKLSGALSTFDGGLQVLIDALAASLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKL--  298 (478)
T ss_dssp             CCSCCCCCCEEEETTCTHHHHHHHHHHHGGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHHHHHHH--
T ss_pred             cccccccccEEEECCCHHHHHHHHHHHhhhhEEcCCEEEEEEecCCeEEEEEeecCCCceEEcCEEEECCCHHHHHHH--
Confidence            001    4567889999999999987  559999999999999888888888   67778999999999999887643  


Q ss_pred             cccCCCcHHHHHHHHHcCCcceeEEEEEccCCCCCCCccceeecCC----CCceeeeecc----ccCCCceEEEEEeccc
Q 010542          303 KFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDT----SYGCSYFLNL----HKATGHCVLVYMPAGQ  374 (507)
Q Consensus       303 ~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~----~~~~~~~~l~~~~~~~  374 (507)
                        .|++|+...+.+.++++.+..++++.|+.++|+.....+.+.+.    ......+.+.    ..+++..++++++.+.
T Consensus       299 --l~~l~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~  376 (478)
T 2ivd_A          299 --LRPLDDALAALVAGIAYAPIAVVHLGFDAGTLPAPDGFGFLVPAEEQRRMLGAIHASTTFPFRAEGGRVLYSCMVGGA  376 (478)
T ss_dssp             --HTTTCHHHHHHHHTCCBCCEEEEEEEECTTSSCCCCSSEEECCGGGCCSCCEEEEHHHHCGGGBSTTCEEEEEEEECT
T ss_pred             --hhccCHHHHHHHhcCCCCcEEEEEEEEccccCCCCCceEEEecCCCCCceEEEEEEcccCCCcCCCCCEEEEEEeCCc
Confidence              25688888899999999999999999999999752223443321    1111222221    1355667888888777


Q ss_pred             hhHHHhcCCHHHHHHHHHHHHHHhCCCCCCCcEEEeccCCCCCCCCcccccCCCCCch---HHHHHhcCCCCceEEeecc
Q 010542          375 LARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSH---DLYERLRIPVDNLFFAGEA  451 (507)
Q Consensus       375 ~~~~~~~~~~ee~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~l~~aG~~  451 (507)
                      .+..+.+.+++++.+.++++|++++|....|..+.+++|...      +....+++..   ...+.+.+ .+||||||++
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~w~~~------~p~~~~g~~~~~~~~~~~~~~-~~~l~~aG~~  449 (478)
T 2ivd_A          377 RQPGLVEQDEDALAALAREELKALAGVTARPSFTRVFRWPLG------IPQYNLGHLERVAAIDAALQR-LPGLHLIGNA  449 (478)
T ss_dssp             TCGGGGGSCHHHHHHHHHHHHHHHHCCCSCCSEEEEEEESSC------CBCCBTTHHHHHHHHHHHHHT-STTEEECSTT
T ss_pred             CCccccCCCHHHHHHHHHHHHHHHhCCCCCCcEEEEEECCCc------ccCCCcCHHHHHHHHHHHHhh-CCCEEEEccC
Confidence            666677889999999999999999988777887778889653      1111244321   12223333 6899999999


Q ss_pred             ccCcCCchhhHHHHHHHHHHHHHHHHHH
Q 010542          452 TSMSYPGSVHGAFSTGLMAAEDCRMRVL  479 (507)
Q Consensus       452 ~~~~~~g~~egA~~SG~~aA~~i~~~l~  479 (507)
                      +..   ++++||+.||.+||++|+..+.
T Consensus       450 ~~g---~gv~gA~~SG~~aA~~i~~~l~  474 (478)
T 2ivd_A          450 YKG---VGLNDCIRNAAQLADALVAGNT  474 (478)
T ss_dssp             TSC---CSHHHHHHHHHHHHHHHCC---
T ss_pred             CCC---CCHHHHHHHHHHHHHHHHHhhc
Confidence            742   5799999999999999877653

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=100.00  E-value=1.2e-37  Score=317.91  Aligned_cols=410  Identities=19%  Similarity=0.234  Sum_probs=277.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCC--CeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCe
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL  104 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~  104 (507)
                      +++||+|||||++||+||++|+++|  ++|+|||+++++||+++|....|+.+|.|++++..  ....+.++++++|++.
T Consensus         3 ~~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~--~~~~~~~l~~~lg~~~   80 (475)
T 3lov_A            3 SSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERGPDSYVA--RKHILTDLIEAIGLGE   80 (475)
T ss_dssp             CSCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEECSTTCCEESSCCCEET--TSTHHHHHHHHTTCGG
T ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEeeCCEEEecCchhhhc--ccHHHHHHHHHcCCcc
Confidence            3589999999999999999999999  99999999999999999988899999999998874  4567899999999974


Q ss_pred             eeec--CCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhc----CCCCC
Q 010542          105 YRTS--GDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREE----HDEDM  178 (507)
Q Consensus       105 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  178 (507)
                      ....  ....+++..+.... ++.......+.. ...+.  ....+..  ...    + .+..... ....    ..++.
T Consensus        81 ~~~~~~~~~~~~~~~g~~~~-~p~~~~~~~p~~-~~~~~--~~~~~~~--~~~----~-~~~~~~~-~~~~~~~~~~~~~  148 (475)
T 3lov_A           81 KLVRNNTSQAFILDTGGLHP-IPKGAVMGIPTD-LDLFR--QTTLLTE--EEK----Q-EVADLLL-HPSDSLRIPEQDI  148 (475)
T ss_dssp             GEEECCCCCEEEEETTEEEE-CCSSEETTEESC-HHHHT--TCSSSCH--HHH----H-HHHHHHH-SCCTTCCCCSSCC
T ss_pred             eEeecCCCceEEEECCEEEE-CCCcccccCcCc-hHHHh--hccCCCh--hHH----H-HhhCccc-CCcccccCCCCCc
Confidence            3321  22222222211100 000000000000 00000  0000110  011    1 1111111 1111    34678


Q ss_pred             cHHHHHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCccc---------c----------------
Q 010542          179 SIQRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEE---------L----------------  232 (507)
Q Consensus       179 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~---------~----------------  232 (507)
                      ++.++++.           .++.++.+.++.++ .+.++.+++.+++.......         .                
T Consensus       149 s~~~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  217 (475)
T 3lov_A          149 PLGEYLRP-----------RLGDALVEKLIEPLLSGIYAGNIDQMSTFATYPQFVANEQKAGSLFEGMRLMRPLDQLPQT  217 (475)
T ss_dssp             BHHHHHHH-----------HHCHHHHHHTHHHHHHGGGCCCTTTSBSTTTCHHHHHHHHHHSSHHHHHHHTCC-------
T ss_pred             CHHHHHHH-----------HhCHHHHHHHHHHHhceeecCChHHcCHHHHHHHHHHHHHhcCcHHHHHHHhccccccccc
Confidence            88888763           35566666666665 56788888888765433110         0                


Q ss_pred             ------ccCCccccccchHHHHHHHhccC---CcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCccc
Q 010542          233 ------LPGGHGLMVRGYLPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIK  303 (507)
Q Consensus       233 ------~~~~~~~~~~G~~~l~~~l~~g~---~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~  303 (507)
                            ..+....+.+|++.++++|.+.+   +|++|++|++|+.++++|.|++.+| ++.||+||+|+|+..+..++. 
T Consensus       218 ~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~ad~vV~a~p~~~~~~ll~-  295 (475)
T 3lov_A          218 PQTTIKATGQFLSLETGLESLIERLEEVLERSEIRLETPLLAISREDGRYRLKTDHG-PEYADYVLLTIPHPQVVQLLP-  295 (475)
T ss_dssp             -------CCSEEEETTCHHHHHHHHHHHCSSCEEESSCCCCEEEEETTEEEEECTTC-CEEESEEEECSCHHHHHHHCT-
T ss_pred             ccccccCCCcEEeeCChHHHHHHHHHhhccCCEEEcCCeeeEEEEeCCEEEEEECCC-eEECCEEEECCCHHHHHHHcC-
Confidence                  02334578899999999998855   8999999999999999999999999 899999999999998776432 


Q ss_pred             ccCCCcHHHHHHHHHcCCcceeEEEEEccCCCCCCCccceeecCCCCce----eeee----ccccCCCceEEEEEeccch
Q 010542          304 FEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGC----SYFL----NLHKATGHCVLVYMPAGQL  375 (507)
Q Consensus       304 ~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~----~~~~----~~~~~~~~~~l~~~~~~~~  375 (507)
                       .+++     +.+..+++.+..++++.|+.+++.+....|++.+.....    ..+.    +...++ ..++.+++.+..
T Consensus       296 -~~~~-----~~~~~~~~~~~~~v~l~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~s~~~~~~~p~-~~~l~~~~~~~~  368 (475)
T 3lov_A          296 -DAHL-----PELEQLTTHSTATVTMIFDQQQSLPIEGTGFVVNRRAPYSITACTAIDQKWNHSAPD-HTVLRAFVGRPG  368 (475)
T ss_dssp             -TSCC-----HHHHTCCEEEEEEEEEEEECCSSCSSSSSEEEECTTSSCSEEEEEEHHHHCTTTCTT-EEEEEEEECBTT
T ss_pred             -ccCH-----HHHhcCCCCeEEEEEEEECCcCCCCCCCEEEEecCCCCCceEEEEEEcccCCCCCCC-cEEEEEEeCCCC
Confidence             2222     677889999999999999998843333456654432211    1111    112233 566777777666


Q ss_pred             hHHHhcCCHHHHHHHHHHHHHHhCCCCCCCcEEEeccCCCCCCCCcccccCCCCC---chHHHHHhcCCCCceEEeeccc
Q 010542          376 ARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGK---SHDLYERLRIPVDNLFFAGEAT  452 (507)
Q Consensus       376 ~~~~~~~~~ee~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~l~~aG~~~  452 (507)
                      ...+.+++++++++.++++|.+++|....|..+.+++|...   .+.|   .+|.   .....+.+.++.+|||+||+++
T Consensus       369 ~~~~~~~~~e~~~~~~~~~L~~~~g~~~~p~~~~v~~w~~a---~p~~---~~g~~~~~~~~~~~l~~~~~~l~~aG~~~  442 (475)
T 3lov_A          369 NDHLVHESDEVLQQAVLQDLEKICGRTLEPKQVIISRLMDG---LPAY---TVGHADRIQRVREEVLAQYPGIYLAGLAY  442 (475)
T ss_dssp             BCGGGGSCHHHHHHHHHHHHHHHHSSCCCCSEEEEEEEEEE---EECC---CTTHHHHHHHHHHHHHHHSTTEEECSTTT
T ss_pred             CCcccCCCHHHHHHHHHHHHHHHhCCCCCCeEEEEEEcccC---CCCC---CCChHHHHHHHHHHHHhhCCCEEEEccCC
Confidence            66778899999999999999999987777888889999653   1112   3443   2234455667789999999987


Q ss_pred             cCcCCchhhHHHHHHHHHHHHHHHHHH
Q 010542          453 SMSYPGSVHGAFSTGLMAAEDCRMRVL  479 (507)
Q Consensus       453 ~~~~~g~~egA~~SG~~aA~~i~~~l~  479 (507)
                      ..   .++++|+.||.++|++|+..+.
T Consensus       443 ~g---~g~~~a~~sG~~aA~~i~~~l~  466 (475)
T 3lov_A          443 DG---VGLPDCVASAKTMIESIELEQS  466 (475)
T ss_dssp             SC---SSHHHHHHHHHHHHHHHHHTC-
T ss_pred             CC---CCHHHHHHHHHHHHHHHHHHhh
Confidence            64   5799999999999999887653

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=100.00  E-value=2e-37  Score=318.62  Aligned_cols=414  Identities=20%  Similarity=0.232  Sum_probs=268.8

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY  105 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~  105 (507)
                      .+.+||+|||||++||+||++|+++|++|+|+|+++++||+++|....|+.+|.|++++..  .+..+.++++++|+...
T Consensus        11 ~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~--~~~~~~~~~~~lgl~~~   88 (504)
T 1sez_A           11 SSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTE--SEGDVTFLIDSLGLREK   88 (504)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCC--CSHHHHHHHHHTTCGGG
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCeEEecCCccccc--CcHHHHHHHHHcCCccc
Confidence            4568999999999999999999999999999999999999999988899999999998863  34578999999999643


Q ss_pred             eecC---CCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHH
Q 010542          106 RTSG---DNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQR  182 (507)
Q Consensus       106 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (507)
                      ....   ...+.+.++.... ++.....+.         ..  ..+..  ..........+.............+.++.+
T Consensus        89 ~~~~~~~~~~~~~~~g~~~~-~p~~~~~~~---------~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  154 (504)
T 1sez_A           89 QQFPLSQNKRYIARNGTPVL-LPSNPIDLI---------KS--NFLST--GSKLQMLLEPILWKNKKLSQVSDSHESVSG  154 (504)
T ss_dssp             EECCSSCCCEEEESSSSEEE-CCSSHHHHH---------HS--SSSCH--HHHHHHHTHHHHC----------CCCBHHH
T ss_pred             ceeccCCCceEEEECCeEEE-CCCCHHHHh---------cc--ccCCH--HHHHHHhHhhhccCcccccccCCCCccHHH
Confidence            2111   1111111111000 000000000         00  00000  001110011111000000001134578988


Q ss_pred             HHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCcc------------------c------------
Q 010542          183 AISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKE------------------E------------  231 (507)
Q Consensus       183 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~------------------~------------  231 (507)
                      +++.           .+++++++.++.++ .+.++.+++.+|+......                  .            
T Consensus       155 ~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  223 (504)
T 1sez_A          155 FFQR-----------HFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQGPP  223 (504)
T ss_dssp             HHHH-----------HHCHHHHHTTHHHHHHHHHSCCGGGSBHHHHCHHHHHHHHHTSCHHHHHHHHTTC----------
T ss_pred             HHHH-----------HcCHHHHHHHHHHHHccccCCChHHhhHHHHhHHHHHHHHHhCCHHHHHHHhhhccccccccccc
Confidence            8764           35566677666665 4567777777765432100                  0            


Q ss_pred             ------cccCCccccccchHHHHHHHhcc---CCcccCceeEEEEeeCCc------EEEEEc--CC---cEEEcCEEEEe
Q 010542          232 ------LLPGGHGLMVRGYLPVINTLAKG---LDIRLGHRVTKITRHYIG------VKVTVE--GG---KTFVADAVVVA  291 (507)
Q Consensus       232 ------~~~~~~~~~~~G~~~l~~~l~~g---~~i~~~~~V~~I~~~~~~------v~v~~~--~g---~~~~ad~VI~a  291 (507)
                            ....+..++.+|++.++++|.+.   .+|++|++|++|..++++      +.|++.  +|   +++.||+||+|
T Consensus       224 ~~~~~~~~~~~~~~~~GG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~~~~~~~v~~~~~~g~~~~~~~ad~VI~a  303 (504)
T 1sez_A          224 KTSANKKRQRGSFSFLGGMQTLTDAICKDLREDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMT  303 (504)
T ss_dssp             CCCSCCSTTCSCBEETTCTHHHHHHHHTTSCTTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEEC
T ss_pred             chhhccccCCceEeeCcHHHHHHHHHHhhcccceEEcCCeEEEEEecCCCCcccceEEEEEcCCCCccceeEECCEEEEC
Confidence                  01124567899999999999874   579999999999998877      777664  45   57899999999


Q ss_pred             cCchhhccCccc-ccCCCcHHHHHHHHHcCCcceeEEEEEccCCCCCCC-ccceeecCCC-------Cceee----eecc
Q 010542          292 VPLGVLKARTIK-FEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV-EFLGVVSDTS-------YGCSY----FLNL  358 (507)
Q Consensus       292 ~p~~~~~~l~~~-~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~g~~~~~~-------~~~~~----~~~~  358 (507)
                      +|+..+.+++.. ..+++++..   +..+++.+..++++.|+.++|++. ...+++.+..       .....    .++.
T Consensus       304 ~p~~~l~~ll~~~~~~~~~~~~---l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~s~~~~~  380 (504)
T 1sez_A          304 APLCDVKSMKIAKRGNPFLLNF---IPEVDYVPLSVVITTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFSSMMFPD  380 (504)
T ss_dssp             SCHHHHHTSEEESSSSBCCCTT---SCCCCEEEEEEEEEEEEGGGBSSCCCSSEEECCGGGGGGTCCSSEEEEHHHHCGG
T ss_pred             CCHHHHHHHhhcccCCcccHHH---HhcCCCCceEEEEEEEchhhcCCCCCceEEEcCCCCCCCCCccceEEeeccccCC
Confidence            999988875421 112233322   566778888899999999998742 2234433221       11111    1122


Q ss_pred             ccCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhCCCCCCCcEEEeccCCCCCCCCcccccCCCCCch--HHHH
Q 010542          359 HKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSH--DLYE  436 (507)
Q Consensus       359 ~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~--~~~~  436 (507)
                      ..+++..++++++.+..+..+..++++++++.++++|++++|...+|..+.+.+|...      +....+++..  ....
T Consensus       381 ~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~g~~~~p~~~~~~~w~~~------~p~~~~g~~~~~~~~~  454 (504)
T 1sez_A          381 RAPNNVYLYTTFVGGSRNRELAKASRTELKEIVTSDLKQLLGAEGEPTYVNHLYWSKA------FPLYGHNYDSVLDAID  454 (504)
T ss_dssp             GSCTTEEEEEEEEESTTCGGGTTCCHHHHHHHHHHHHHHHHCBCSCCSSEEEEEEEEE------EECCCTTHHHHHHHHH
T ss_pred             cCCCCCEEEEEEeCCCCcccccCCCHHHHHHHHHHHHHHHhCCCCCCeEEEEeECCCC------CCccCcCHHHHHHHHH
Confidence            3366777888888887777788899999999999999999987667888888899542      2222233321  1123


Q ss_pred             HhcCCCCceEEeeccccCcCCchhhHHHHHHHHHHHHHHHHH
Q 010542          437 RLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV  478 (507)
Q Consensus       437 ~~~~~~~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~l  478 (507)
                      ...++++|||+||+++++   ++++||+.||.+||++|++.+
T Consensus       455 ~~~~~~~~l~~aG~~~~g---~~v~gai~sG~~aA~~il~~l  493 (504)
T 1sez_A          455 KMEKNLPGLFYAGNHRGG---LSVGKALSSGCNAADLVISYL  493 (504)
T ss_dssp             HHHHHSTTEEECCSSSSC---SSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCEEEEeecCCC---CCHHHHHHHHHHHHHHHHHHH
Confidence            345678999999999863   689999999999999998865

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=100.00  E-value=3.6e-36  Score=302.58  Aligned_cols=403  Identities=16%  Similarity=0.111  Sum_probs=258.9

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCeeeec
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTS  108 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~  108 (507)
                      +||+|||||++||+||++|+++|++|+|||+++++||++++...+|+.+|.|++++.+......+.++++++|+......
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~   80 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKGFQLSSGAFHMLPNGPGGPLACFLKEVEASVNIVR   80 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSSEEEETTEEEESSSCSCBTTGGGSHHHHHHHHTTCCCCEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCceeeeccCCcEEcCCCceEecCCCccHHHHHHHHhCCCceEEe
Confidence            58999999999999999999999999999999999999999988999999998766543345578899999998643222


Q ss_pred             CCCcc-ccc-ccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHH
Q 010542          109 GDNSV-LYD-HDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISI  186 (507)
Q Consensus       109 ~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (507)
                      ..... .+. .+....+ .       .... ...+......+...  ..     .++.............+.++.++++.
T Consensus        81 ~~~~~~~~~~~~~~~~~-~-------~~~~-~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~s~~~~l~~  144 (425)
T 3ka7_A           81 SEMTTVRVPLKKGNPDY-V-------KGFK-DISFNDFPSLLSYK--DR-----MKIALLIVSTRKNRPSGSSLQAWIKS  144 (425)
T ss_dssp             CCCCEEEEESSTTCCSS-T-------TCEE-EEEGGGGGGGSCHH--HH-----HHHHHHHHHTTTSCCCSSBHHHHHHH
T ss_pred             cCCceEEeecCCCcccc-c-------cccc-ceehhhhhhhCCHH--HH-----HHHHHHHHhhhhcCCCCCCHHHHHHH
Confidence            11111 111 0000000 0       0000 00000000011111  10     11111111221134467788888875


Q ss_pred             HhccChhHHhhhhHHHHHHHHHHhhh-ccccCCcccccccccC---ccccccCCccccccchHHHHHHHhc-----cCCc
Q 010542          187 VFDRRPELRLEGLAHKVLQWYLCRME-GWFAADAETISLKSWD---KEELLPGGHGLMVRGYLPVINTLAK-----GLDI  257 (507)
Q Consensus       187 ~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~---~~~~~~~~~~~~~~G~~~l~~~l~~-----g~~i  257 (507)
                      .           +.++.++.++.++. ..++.++..+++....   ......++..++.+|++.++++|.+     |++|
T Consensus       145 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~~~~~G~~i  213 (425)
T 3ka7_A          145 Q-----------VSDEWLIKFADSFCGWALSLKSDEVPVEEVFEIIENMYRFGGTGIPEGGCKGIIDALETVISANGGKI  213 (425)
T ss_dssp             H-----------CCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHHHHCSCEEETTSHHHHHHHHHHHHHHTTCEE
T ss_pred             h-----------cCCHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHhcCCccccCCCHHHHHHHHHHHHHHcCCEE
Confidence            4           33445555555543 4566777777764332   1112345677899999999988865     8899


Q ss_pred             ccCceeEEEEeeCCcEE-EEEcCCcEEEcCEEEEecCchhhccCcccccCCC--cHHHHHHHHHcCCcceeEEEEEccCC
Q 010542          258 RLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRL--PDWKEAAIDDLGVGIENKIIMHFDKV  334 (507)
Q Consensus       258 ~~~~~V~~I~~~~~~v~-v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l--~~~~~~~~~~~~~~~~~~~~l~~~~~  334 (507)
                      +++++|++|..+++++. |++ +|+++.||.||+|+++..+.+++ ...+.+  ++...+.+..+++.+..++++.++++
T Consensus       214 ~~~~~V~~i~~~~~~~~gv~~-~g~~~~ad~VV~a~~~~~~~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~  291 (425)
T 3ka7_A          214 HTGQEVSKILIENGKAAGIIA-DDRIHDADLVISNLGHAATAVLC-SEALSKEADAAYFKMVGTLQPSAGIKICLAADEP  291 (425)
T ss_dssp             ECSCCEEEEEEETTEEEEEEE-TTEEEECSEEEECSCHHHHHHHT-TTTCCTTTTHHHHHHHHHCCCBEEEEEEEEESSC
T ss_pred             EECCceeEEEEECCEEEEEEE-CCEEEECCEEEECCCHHHHHHhc-CCcccccCCHHHHHHhhCcCCCceEEEEeecCCC
Confidence            99999999999998887 666 47799999999999998876533 222333  77778888999998888899999987


Q ss_pred             CCCCCccceeecCCCC--ce-----eeeeccccCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhCCCCCCCcE
Q 010542          335 FWPNVEFLGVVSDTSY--GC-----SYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQ  407 (507)
Q Consensus       335 ~~~~~~~~g~~~~~~~--~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p~~~~~~~  407 (507)
                      .+...   +.+.....  ..     +..+....|+|+.++.++....+ + ..+. ++++++.++++|++++|+ ..+..
T Consensus       292 ~~~~~---~~~~~~~~~~~~~~~~~s~~~p~~ap~G~~~l~~~~~~~~-~-~~~~-~~~~~~~~~~~l~~~~p~-~~~~~  364 (425)
T 3ka7_A          292 LVGHT---GVLLTPYTRRINGVNEVTQADPELAPPGKHLTMCHQYVAP-E-NVKN-LESEIEMGLEDLKEIFPG-KRYEV  364 (425)
T ss_dssp             SSCSS---SEEECCSSSSEEEEECGGGTCGGGSCTTCEEEEEEEEECG-G-GGGG-HHHHHHHHHHHHHHHSTT-CCEEE
T ss_pred             ccCcC---EEEECCChhhcceEEeccCCCCCcCCCCCeEEEEEecccc-c-cccc-hHHHHHHHHHHHHHhCCC-CceEE
Confidence            66432   22211111  11     11122234677777766544321 1 1112 356679999999999987 34555


Q ss_pred             EEeccCCCCCCCCcccccCCCCCchHHHHHhcCCCCceEEeeccccCcCCchhhHHHHHHHHHHHHHH
Q 010542          408 YLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR  475 (507)
Q Consensus       408 ~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~  475 (507)
                      ..+.+|...   .+.+   .++.  ..++...+|++|||+|||++.+.+..+|++|+.||++||++|+
T Consensus       365 ~~v~~~~~~---~P~~---~~~~--~~~~~~~~p~~gL~laG~~~~~~gg~gv~~~~~s~~~~~~~i~  424 (425)
T 3ka7_A          365 LLIQSYHDE---WPVN---RAAS--GTDPGNETPFSGLYVVGDGAKGKGGIEVEGVALGVMSVMEKVL  424 (425)
T ss_dssp             EEEEEEBTT---BCSB---SSCT--TCCCCSBCSSBTEEECSTTSCCTTCCHHHHHHHHHHHHHHC--
T ss_pred             EEEEEECCC---cccc---cccc--CCCCCCCCCcCCeEEeCCccCCCCCCccHHHHHHHHHHHHHhh
Confidence            567788542   1222   2221  2234456788999999999988665699999999999999876

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=100.00  E-value=4.2e-37  Score=314.08  Aligned_cols=404  Identities=21%  Similarity=0.229  Sum_probs=266.9

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCC--eEEEEecCCCCCceeEeccC-CCeeeecCCceeeCCC-CCCchHHHHHhcCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASF--KVVLLESRDRVGGRVHTDYS-FGFPVDLGASWLHGVC-QENPLAPVISRLGLP  103 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~-~~~~~~~l~~~lg~~  103 (507)
                      ++||+|||||++||+||++|+++|+  +|+|||+++++||+++|... +|+.+|.|++++.... .+..+.++++++|++
T Consensus         2 ~~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t~~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~   81 (477)
T 3nks_A            2 GRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSELGLD   81 (477)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCEEECTTSCEEESSCCCBCCCHHHHHHHHHHHHHTTCG
T ss_pred             CceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEEEeccCCeEEEeCCCcccCCCcccHHHHHHHHHcCCc
Confidence            5799999999999999999999999  99999999999999999654 5999999999875321 134578999999997


Q ss_pred             e--eeecCC-----CcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 010542          104 L--YRTSGD-----NSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDE  176 (507)
Q Consensus       104 ~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (507)
                      .  ......     ..+.+..+.... ++        .. ...+.... ..+....       +...+..... .....+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~g~~~~-~p--------~~-~~~~~~~~-~~~~~~~-------~~~~~~~~~~-~~~~~~  142 (477)
T 3nks_A           82 SEVLPVRGDHPAAQNRFLYVGGALHA-LP--------TG-LRGLLRPS-PPFSKPL-------FWAGLRELTK-PRGKEP  142 (477)
T ss_dssp             GGEEEECTTSHHHHCEEEEETTEEEE-CC--------CS-SCC---CC-TTSCSCS-------SHHHHTTTTS-CCCCSS
T ss_pred             ceeeecCCCCchhcceEEEECCEEEE-CC--------CC-hhhccccc-chhhhHH-------HHHHHHhhhc-CCCCCC
Confidence            3  221111     111111111000 00        00 00000000 0000000       0001111100 112345


Q ss_pred             CCcHHHHHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCcccc-----------------------
Q 010542          177 DMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEEL-----------------------  232 (507)
Q Consensus       177 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~-----------------------  232 (507)
                      +.++.++++.           .++.++.+.++.++ .+.++.++.++++........                       
T Consensus       143 ~~s~~~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~l~~~e~~~gsl~~~~~~~~~~~~~~  211 (477)
T 3nks_A          143 DETVHSFAQR-----------RLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLGAGRTPQP  211 (477)
T ss_dssp             CCBHHHHHHH-----------HHCHHHHHHTHHHHHHHHHSSCTTTBBHHHHCHHHHHHHHHHSCHHHHHHHC-----CC
T ss_pred             CcCHHHHHHH-----------hhCHHHHHHHHHHHhcccccCCHHHhhHHHHHHHHHHHHHHcCCHHHHHHHhcccccCC
Confidence            6788888763           35556666666664 457777777777665421100                       


Q ss_pred             ----------ccCCccccccchHHHHHHHhc-----cCCcccCceeEEEEeeCCc-EEEEEcCCcEEEcCEEEEecCchh
Q 010542          233 ----------LPGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       233 ----------~~~~~~~~~~G~~~l~~~l~~-----g~~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                                ...+...+.+|++.++++|.+     |++|++|++|++|..++++ +.|++. +.++.||+||+|+|+..
T Consensus       212 ~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~~-~~~~~ad~vv~a~p~~~  290 (477)
T 3nks_A          212 DSALIRQALAERWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLR-DSSLEADHVISAIPASV  290 (477)
T ss_dssp             CCHHHHHHHHTTCSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEECS-SCEEEESEEEECSCHHH
T ss_pred             chhhhhhhcccCccEEEECCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEEC-CeEEEcCEEEECCCHHH
Confidence                      012346788999999998865     7899999999999998777 888764 44899999999999988


Q ss_pred             hccCcccccCCCcHHHHHHHHHcCCcceeEEEEEccCCCCCCCccceeecCCCC---c-eeeeecc-----ccCCCceEE
Q 010542          297 LKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSY---G-CSYFLNL-----HKATGHCVL  367 (507)
Q Consensus       297 ~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~---~-~~~~~~~-----~~~~~~~~l  367 (507)
                      +.+++    +.+++...+.+.++++.+..++.+.|+.++|+...+ |++.+...   . ...|.+.     ..+++..++
T Consensus       291 ~~~ll----~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~-g~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l  365 (477)
T 3nks_A          291 LSELL----PAEAAPLARALSAITAVSVAVVNLQYQGAHLPVQGF-GHLVPSSEDPGVLGIVYDSVAFPEQDGSPPGLRV  365 (477)
T ss_dssp             HHHHS----CGGGHHHHHHHHTCCEEEEEEEEEEETTCCCSSCSS-EEECCTTTCSSEEEEECHHHHCGGGSTTTTCEEE
T ss_pred             HHHhc----cccCHHHHHHHhcCCCCcEEEEEEEECCCCCCCCCc-eEEccCCCCCCceEEEEeccccCCCCCCCCceEE
Confidence            76542    334566778889999999999999999999976554 76654321   1 1222221     112367788


Q ss_pred             EEEeccchhHHHh----cCCHHHHHHHHHHHHHHhCCCCCCCcEEEeccCCCCCCCCcccccCCCCCch---HHHHHhcC
Q 010542          368 VYMPAGQLARDIE----KMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSH---DLYERLRI  440 (507)
Q Consensus       368 ~~~~~~~~~~~~~----~~~~ee~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~---~~~~~~~~  440 (507)
                      ++++.+.+...+.    .++++++++.++++|.++++...+|..+.+++|..   +   +....+++..   .....+..
T Consensus       366 ~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~v~rw~~---a---~p~~~~g~~~~~~~~~~~l~~  439 (477)
T 3nks_A          366 TVMLGGSWLQTLEASGCVLSQELFQQRAQEAAATQLGLKEMPSHCLVHLHKN---C---IPQYTLGHWQKLESARQFLTA  439 (477)
T ss_dssp             EEEECHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHCCCSCCSEEEEEEEEE---E---EECCBTTHHHHHHHHHHHHHH
T ss_pred             EEEECCccccccccccCCCCHHHHHHHHHHHHHHHhCCCCCCcEEEEEEcCC---c---cCCCCCCHHHHHHHHHHHHHh
Confidence            8888877665553    46899999999999999998767788888899954   2   2222344321   12222333


Q ss_pred             CCCceEEeeccccCcCCchhhHHHHHHHHHHHHHHH
Q 010542          441 PVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM  476 (507)
Q Consensus       441 ~~~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~  476 (507)
                      ..++|++||+++..   .++++|+.||..||++|+.
T Consensus       440 ~~~~l~l~G~~~~G---~gv~~a~~sg~~aA~~il~  472 (477)
T 3nks_A          440 HRLPLTLAGASYEG---VAVNDCIESGRQAAVSVLG  472 (477)
T ss_dssp             TTCSEEECSTTTSC---CSHHHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEccCCCC---CcHHHHHHHHHHHHHHHHh
Confidence            34689999999754   5799999999999999875

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=100.00  E-value=2.1e-35  Score=303.37  Aligned_cols=428  Identities=15%  Similarity=0.147  Sum_probs=206.3

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCee--
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY--  105 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~--  105 (507)
                      |++|||||||++||+||++|+++|++|+|||+++++||+++|...+|+.+|.|++++..   ...+.++++.+|....  
T Consensus         1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~t~~~~G~~~D~G~~~~~~---~~~~~~l~~~~g~~~~~~   77 (501)
T 4dgk_A            1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYEDQGFTFDAGPTVITD---PSAIEELFALAGKQLKEY   77 (501)
T ss_dssp             CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------CEEEETTEEEECSCCCBSC---THHHHHHHHTTTCCGGGT
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEEEEEeCCEEEecCceeecC---chhHHHHHHHhcchhhhc
Confidence            57899999999999999999999999999999999999999999999999999998853   2345677777775421  


Q ss_pred             ----eecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHH---HHHHHHHHHHHHHHHHHhhc-----
Q 010542          106 ----RTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELV---TKVGEAFESILKETDKVREE-----  173 (507)
Q Consensus       106 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-----  173 (507)
                          +........+.++.                  ...+..+...+...+.   ....+.+.++..........     
T Consensus        78 ~~~~~~~~~~~~~~~~g~------------------~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  139 (501)
T 4dgk_A           78 VELLPVTPFYRLCWESGK------------------VFNYDNDQTRLEAQIQQFNPRDVEGYRQFLDYSRAVFKEGYLKL  139 (501)
T ss_dssp             CCEEEESSSEEEEETTSC------------------EEEECSCHHHHHHHHHHHCTHHHHHHHHHHHHHHHHTSSSCC--
T ss_pred             eeeEecCcceEEEcCCCC------------------EEEeeccHHHHHHHHhhcCccccchhhhHHHHHHHhhhhhhhhc
Confidence                11111111111110                  0000000000000000   01112234444444333211     


Q ss_pred             -CCCCCcHHHHHHHHhccCh--------hHHhhhhHHHHHHHHHHhhhccccCCccccccccc-CccccccCCccccccc
Q 010542          174 -HDEDMSIQRAISIVFDRRP--------ELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSW-DKEELLPGGHGLMVRG  243 (507)
Q Consensus       174 -~~~~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~~G  243 (507)
                       .....+..+.+........        ......+.++.++.++.......+..+...+.... ........+.++++||
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g~~p~~~~~~~~~~~~~~~~~G~~~p~GG  219 (501)
T 4dgk_A          140 GTVPFLSFRDMLRAAPQLAKLQAWRSVYSKVASYIEDEHLRQAFSFHSLLVGGNPFATSSIYTLIHALEREWGVWFPRGG  219 (501)
T ss_dssp             CCCCCCCHHHHHHSGGGTTTSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSCC--CCCTHHHHHHHHSCCCEEEETTH
T ss_pred             cccccchhhhhhhhhhhhhhhhhcccHHHHHHHHhccHHHHhhhhhhhcccCCCcchhhhhhhhhhhhhccCCeEEeCCC
Confidence             1122333333321100000        00111222333333333322333333333222211 1112234456689999


Q ss_pred             hHHHHHHHhc-----cCCcccCceeEEEEeeCCcEE-EEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHH
Q 010542          244 YLPVINTLAK-----GLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAID  317 (507)
Q Consensus       244 ~~~l~~~l~~-----g~~i~~~~~V~~I~~~~~~v~-v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~  317 (507)
                      ++.++++|++     |++|++|++|++|..++++++ |++++|+++.||.||+++++..+...++.-. +.+....+.+.
T Consensus       220 ~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~~~~~~Ll~~~-~~~~~~~~~~~  298 (501)
T 4dgk_A          220 TGALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVHTYRDLLSQH-PAAVKQSNKLQ  298 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC------------------------
T ss_pred             CcchHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHHHHHHHhcccc-ccchhhhhhhh
Confidence            9999999865     889999999999999999987 8999999999999999998876544333222 23344445555


Q ss_pred             HcCCc-ceeEEEEEccCCCCC-CCccc--e-----e---ecC----CCCceee------eeccccCCCceEEEEEeccch
Q 010542          318 DLGVG-IENKIIMHFDKVFWP-NVEFL--G-----V---VSD----TSYGCSY------FLNLHKATGHCVLVYMPAGQL  375 (507)
Q Consensus       318 ~~~~~-~~~~~~l~~~~~~~~-~~~~~--g-----~---~~~----~~~~~~~------~~~~~~~~~~~~l~~~~~~~~  375 (507)
                      ..++. ...++++.++.+... ..+..  +     .   +..    ......+      .+....|+|+..+.++.....
T Consensus       299 ~~~~~~s~~~~~~~l~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~dp~~ap~G~~~~~~~~~~p~  378 (501)
T 4dgk_A          299 TKRMSNSLFVLYFGLNHHHDQLAHHTVCFGPRYRELIDEIFNHDGLAEDFSLYLHAPCVTDSSLAPEGCGSYYVLAPVPH  378 (501)
T ss_dssp             ----CCEEEEEEEEESSCCTTSCSEEEEEECC-------------CCCEEEEEEECGGGTCGGGSSTTCEEEEEEEEECC
T ss_pred             ccccCCceeEEEecccCCccccccceeccccchhhhccccccccccccCCceecccCCCCCCCcCCCCCceEEEEEecCc
Confidence            55553 344566777654321 11000  0     0   000    0001111      122234677777666543221


Q ss_pred             ----hHHHhcCCHHHHHHHHHHHHHHh-CCCCCCCcEEEec----cCCCCCCC-Ccc-cccC-CCCCchHHHHH-hcCCC
Q 010542          376 ----ARDIEKMSDEAAANFAFTQLKKI-LPDASSPIQYLVS----HWGTDANS-LGS-YSYD-TVGKSHDLYER-LRIPV  442 (507)
Q Consensus       376 ----~~~~~~~~~ee~~~~~~~~L~~~-~p~~~~~~~~~~~----~w~~~~~~-~g~-~~~~-~~~~~~~~~~~-~~~~~  442 (507)
                          ..+|. ..++++.+++++.|++. +|++.+.+.....    .|...... .|. |... ...+....+|. ..+|+
T Consensus       379 ~~~~~~~~~-~~~~~~~~~vl~~l~~~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~~~RP~~~~t~i  457 (501)
T 4dgk_A          379 LGTANLDWT-VEGPKLRDRIFAYLEQHYMPGLRSQLVTHRMFTPFDFRDQLNAYHGSAFSVEPVLTQSAWFRPHNRDKTI  457 (501)
T ss_dssp             TTTSCCCHH-HHHHHHHHHHHHHHHHHTCTTHHHHEEEEEEECTTTTC------------------------------CC
T ss_pred             cccccccHH-HHHHHHHHHHHHHHHHhhCCChHHceEEEEECCHHHHHHHcCCCCccccChhcchhhccccCCCCCCCCC
Confidence                11122 12567888999999875 4877654433222    12221111 121 1111 11222223443 34789


Q ss_pred             CceEEeeccccCcCCchhhHHHHHHHHHHHHHHHHHHH
Q 010542          443 DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE  480 (507)
Q Consensus       443 ~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~l~~  480 (507)
                      +|||+||+++.++  +++.||+.||+.||+.|++.|..
T Consensus       458 ~gLyl~G~~t~pG--~Gv~ga~~SG~~aA~~il~dL~g  493 (501)
T 4dgk_A          458 TNLYLVGAGTHPG--AGIPGVIGSAKATAGLMLEDLIG  493 (501)
T ss_dssp             TTEEECCCH--------HHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCEEEECCCCCCc--ccHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999998775  68999999999999999998754

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=100.00  E-value=1.1e-34  Score=282.88  Aligned_cols=228  Identities=16%  Similarity=0.176  Sum_probs=180.1

Q ss_pred             cccccchHHHHHHHhc--cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHH
Q 010542          238 GLMVRGYLPVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAA  315 (507)
Q Consensus       238 ~~~~~G~~~l~~~l~~--g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~  315 (507)
                      ....+|++.++++|.+  |++|+++++|++|+.++++|+|++.+|+++.||.||+|+|++.+.+++..+.|.||+...+.
T Consensus       105 ~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV~A~p~~~~~~ll~~~~~~l~~~~~~~  184 (342)
T 3qj4_A          105 FVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMPVPEILQLQGDITTLISECQRQQ  184 (342)
T ss_dssp             EECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEEECSCHHHHTTCBSTHHHHSCHHHHHH
T ss_pred             eecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHHHHHHhcccccccCHHHHHH
Confidence            3567899999999987  99999999999999999999999999977899999999999988876555566788888999


Q ss_pred             HHHcCCcceeEEEEEccCCCCCCCccceeecCCCC-ceeeeeccccCC-----CceEEEEEeccchhHHHhcCCHHHHHH
Q 010542          316 IDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSY-GCSYFLNLHKAT-----GHCVLVYMPAGQLARDIEKMSDEAAAN  389 (507)
Q Consensus       316 ~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~ee~~~  389 (507)
                      +..++|.+..++.+.|+.++|.+.++.|.+.+... ..+.+.+..+++     +..+++++..+.++..+.+++++++.+
T Consensus       185 l~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  264 (342)
T 3qj4_A          185 LEAVSYSSRYALGLFYEAGTKIDVPWAGQYITSNPCIRFVSIDNKKRNIESSEIGPSLVIHTTVPFGVTYLEHSIEDVQE  264 (342)
T ss_dssp             HHTCCBCCEEEEEEECSSCC--CCSCSEEECSSCSSEEEEEEHHHHTTCCCC-CCCEEEEEECHHHHHHTTTSCHHHHHH
T ss_pred             HhcCCccccEEEEEEECCCCccCCceeeEEccCCcceEEEEccccCCCCCCCCCCceEEEECCHHHHHHhhcCCHHHHHH
Confidence            99999999999999999988877777787765433 233333333332     234677888888888888999999999


Q ss_pred             HHHHHHHHhCCCCCCCcEEEeccCCCCCCCCccccc-CCCCCchHHHHHhcCCCCceEEeeccccCcCCchhhHHHHHHH
Q 010542          390 FAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSY-DTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGL  468 (507)
Q Consensus       390 ~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA~~SG~  468 (507)
                      .++++|.+++|...+|..+.+++|......   +.. ..+++..      ....++|++|||++..   +++|+|+.||.
T Consensus       265 ~~~~~l~~~~g~~~~p~~~~v~rW~~a~p~---~~~~~~~~~~~------~~~~~~l~laGd~~~g---~~v~~ai~sg~  332 (342)
T 3qj4_A          265 LVFQQLENILPGLPQPIATKCQKWRHSQVT---NAAANCPGQMT------LHHKPFLACGGDGFTQ---SNFDGCITSAL  332 (342)
T ss_dssp             HHHHHHHHHSCSCCCCSEEEEEEETTCSBS---SCCSSSCSCEE------EETTTEEEECSGGGSC---SSHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCCCceeeeccccccccc---cccCCCcceeE------ecCCccEEEEccccCC---CCccHHHHHHH
Confidence            999999999998888999999999653222   211 1122221      1356899999999865   79999999999


Q ss_pred             HHHHHHHHH
Q 010542          469 MAAEDCRMR  477 (507)
Q Consensus       469 ~aA~~i~~~  477 (507)
                      .||++|++.
T Consensus       333 ~aa~~i~~~  341 (342)
T 3qj4_A          333 CVLEALKNY  341 (342)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHHhh
Confidence            999998753

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=100.00  E-value=4.2e-35  Score=303.00  Aligned_cols=243  Identities=18%  Similarity=0.187  Sum_probs=178.2

Q ss_pred             CccccccchHHHHHHHhc----cCCcccCceeE--EEEeeCCc-------EEE-EEcCCc--EEEcCEEEEecCchhhcc
Q 010542          236 GHGLMVRGYLPVINTLAK----GLDIRLGHRVT--KITRHYIG-------VKV-TVEGGK--TFVADAVVVAVPLGVLKA  299 (507)
Q Consensus       236 ~~~~~~~G~~~l~~~l~~----g~~i~~~~~V~--~I~~~~~~-------v~v-~~~~g~--~~~ad~VI~a~p~~~~~~  299 (507)
                      ....+.||++.|+++|.+    |..|+++++|+  +|...+++       |+| .+.+|+  ++.||+||+|+|+..+..
T Consensus       338 ~~~~i~GG~~~L~~aLa~~l~~g~~I~l~~~V~~~~I~~~~~g~~~~~~~V~V~~~~~G~~~~~~aD~VIvTvP~~~L~~  417 (721)
T 3ayj_A          338 EYTLPVTENVEFIRNLFLKAQNVGAGKLVVQVRQERVANACHSGTASARAQLLSYDSHNAVHSEAYDFVILAVPHDQLTP  417 (721)
T ss_dssp             EECCSSSSTHHHHHHHHHHHHHHTTTSEEEEEECEEEEEEEECSSSSCCEEEEEEETTCCEEEEEESEEEECSCHHHHHH
T ss_pred             ceeEECCcHHHHHHHHHHhcccCCceEeCCEEEeeeEEECCCCCccccceEEEEEecCCceEEEEcCEEEECCCHHHHhh
Confidence            356789999999998875    46799999999  99987655       888 445676  789999999999988742


Q ss_pred             ----Cccc----------------------ccCCC-c-------HHHHHHHHHcCCcceeEEEEEc-----cCCCCCCC-
Q 010542          300 ----RTIK----------------------FEPRL-P-------DWKEAAIDDLGVGIENKIIMHF-----DKVFWPNV-  339 (507)
Q Consensus       300 ----l~~~----------------------~~p~l-~-------~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~-  339 (507)
                          ..+.                      +.|.| |       ....+++++++|...+|+++.|     +.+||++. 
T Consensus       418 ~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~pplLlp~~~~~~~~~~~~Ai~~l~~~~s~Kv~l~~~~~~~~~~fW~~~~  497 (721)
T 3ayj_A          418 IVSRSGFEHAASQNLGDAGLGLETHTYNQVYPPLLLSDSSPAANARIVTAIGQLHMARSSKVFATVKTAALDQPWVPQWR  497 (721)
T ss_dssp             HHSSSCSSCEEEEEESCGGGTCCCEEEEEEBCSSCCCSSCHHHHHHHHHHHHTCCEECEEEEEEEEEGGGGGSTTSCEET
T ss_pred             ccccccccccccccccccccccccccccccCCcccCCcccccccHHHHHHHHhcCcccceEEEEEEccccCCCCcccccC
Confidence                1233                      23436 8       8889999999999999999999     99999865 


Q ss_pred             c-cceeecCC-CCceeee-e-----ccccCCCceEEEEEeccchhHHH------hcCCHHHH-------HHHHHHHHH--
Q 010542          340 E-FLGVVSDT-SYGCSYF-L-----NLHKATGHCVLVYMPAGQLARDI------EKMSDEAA-------ANFAFTQLK--  396 (507)
Q Consensus       340 ~-~~g~~~~~-~~~~~~~-~-----~~~~~~~~~~l~~~~~~~~~~~~------~~~~~ee~-------~~~~~~~L~--  396 (507)
                      + ..+....+ .....++ +     +...+....+|.+|++++.+..+      ..+++++.       ++.++++|+  
T Consensus       498 g~~i~~s~TD~~~r~~~~~p~p~~~d~~~~~~gvlL~sYtwg~dA~~~~~~~g~~~~~~~er~~~~~~~~~~~l~~la~~  577 (721)
T 3ayj_A          498 GEPIKAVVSDSGLAASYVVPSPIVEDGQAPEYSSLLASYTWEDDSTRLRHDFGLYPQNPATETGTADGMYRTMVNRAYRY  577 (721)
T ss_dssp             TEECCEEEETTTTEEEEEEECSCC----CCSEEEEEEEEEETHHHHHHHTTCCSSSEESSSSSCCCHHHHHHHHHHTCCE
T ss_pred             CCCceeeecCCCcceEEEeccCcccccCCCCCcEEEEEEeCccchhhhhccccccCCChHHhhhhhhHHHHHHHHHHhhh
Confidence            1 22322222 2222222 2     11222223466789988888777      44444444       999999999  


Q ss_pred             HhCCCCC-----------C---CcEEEeccCCCCCCCCcccccCCCCCchH---HHHH-----hcCCCCceEEeeccccC
Q 010542          397 KILPDAS-----------S---PIQYLVSHWGTDANSLGSYSYDTVGKSHD---LYER-----LRIPVDNLFFAGEATSM  454 (507)
Q Consensus       397 ~~~p~~~-----------~---~~~~~~~~w~~~~~~~g~~~~~~~~~~~~---~~~~-----~~~~~~~l~~aG~~~~~  454 (507)
                      ++||+..           .   +.++..+.|..+| +.|+|....||+...   +.+.     ...+.++|||||++++.
T Consensus       578 ~~~p~~~~~~~~~~~~l~~~~~~~~~~~~dW~~dp-s~Gaf~~~~pgq~~~~~l~~~~~~~~~~~~~~gri~fAGe~~S~  656 (721)
T 3ayj_A          578 VKYAGASNAQPWWFYQLLAEARTADRFVFDWTTNK-TAGGFKLDMTGDHHQSNLCFRYHTHALAASLDNRFFIASDSYSH  656 (721)
T ss_dssp             ECCTTCSSCEECHHHHHHHTSCSTTCEEEEGGGST-TSSSEECCBTTTHHHHHHHHHGGGGGGCTTTCCCEEECSGGGSS
T ss_pred             ccCccccccccchhhhhhhhcccCceEEEeCCCCC-CCCccccCCCccchhhhhhhhhhhhccccCCCCCEEEeehhhcc
Confidence            8998755           1   2456788999999 999999888998321   1111     23466899999999996


Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHH
Q 010542          455 SYPGSVHGAFSTGLMAAEDCRMRVLE  480 (507)
Q Consensus       455 ~~~g~~egA~~SG~~aA~~i~~~l~~  480 (507)
                       +.||+|||+.||++||.+|...+..
T Consensus       657 -~~GWieGAl~Sa~~Aa~~i~~~~~~  681 (721)
T 3ayj_A          657 -LGGWLEGAFMSALNAVAGLIVRANR  681 (721)
T ss_dssp             -CTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred             -CCceehHHHHHHHHHHHHHHHHhcC
Confidence             4599999999999999999887744

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=100.00  E-value=4.8e-35  Score=301.78  Aligned_cols=402  Identities=13%  Similarity=0.102  Sum_probs=252.5

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHh-CCCeEEEEecCCCCCceeEec-cCCCeeeecCCceeeCCCCCCchHHHHHhcCCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHD-ASFKVVLLESRDRVGGRVHTD-YSFGFPVDLGASWLHGVCQENPLAPVISRLGLP  103 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~-~G~~V~vlE~~~~~GG~~~s~-~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~  103 (507)
                      .+.+||+|||||++||+||++|++ .|++|+|||+++++||+++|. ..+|+.+|.|+|+++.  .+..+.+++++++..
T Consensus         8 ~~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~T~~~~~G~~~D~G~h~~~~--~~~~v~~l~~e~~~~   85 (513)
T 4gde_A            8 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVIFS--HYKYFDDCLDEALPK   85 (513)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGCEEECTTSCEEESSCCCCCC--CBHHHHHHHHHHSCS
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCeeeEEecCCEEEEeCceEecC--CCHHHHHHHHHhCCc
Confidence            456899999999999999999998 599999999999999999985 5679999999999863  455788999998764


Q ss_pred             e--eeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHH
Q 010542          104 L--YRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQ  181 (507)
Q Consensus       104 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (507)
                      .  .....+...++.++...   +            + .+......++.....   .....+.............+.++.
T Consensus        86 ~~~~~~~~~~~~i~~~g~~~---~------------~-p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~  146 (513)
T 4gde_A           86 EDDWYTHQRISYVRCQGQWV---P------------Y-PFQNNISMLPKEEQV---KCIDGMIDAALEARVANTKPKTFD  146 (513)
T ss_dssp             GGGEEEEECCEEEEETTEEE---E------------S-SGGGGGGGSCHHHHH---HHHHHHHHHHHHHHTCCSCCCSHH
T ss_pred             cceeEEecCceEEEECCeEe---e------------c-chhhhhhhcchhhHH---HHHHHHHHHHHhhhcccccccCHH
Confidence            2  11111222222211100   0            0 000001112221111   112222222223334455677888


Q ss_pred             HHHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCcccc---------------------cc-CCcc
Q 010542          182 RAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEEL---------------------LP-GGHG  238 (507)
Q Consensus       182 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~---------------------~~-~~~~  238 (507)
                      +++..           .+++++.+.++.++ .+.++.++++++..+......                     .. ....
T Consensus       147 ~~~~~-----------~~g~~l~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (513)
T 4gde_A          147 EWIVR-----------MMGTGIADLFMRPYNFKVWAVPTTKMQCAWLGERVAAPNLKAVTTNVILGKTAGNWGPNATFRF  215 (513)
T ss_dssp             HHHHH-----------HHHHHHHHHTHHHHHHHHHSSCGGGBCSGGGCSSCCCCCHHHHHHHHHHTCCCCSCBTTBEEEE
T ss_pred             HHHHH-----------hhhhhhhhhhcchhhhhhccCChHHhhHHHHHHhhcccchhhhhhhhhhcccccccccccceee
Confidence            88763           46667777777665 567778888877665431110                     00 0112


Q ss_pred             ccccchHHHHHHHhc-----cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHH
Q 010542          239 LMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKE  313 (507)
Q Consensus       239 ~~~~G~~~l~~~l~~-----g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~  313 (507)
                      .+++|++.++++|++     |++|++|++|++|..+++++  ++.+|+++.||+||+|+|++.+.+++.      ++...
T Consensus       216 ~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~~v--~~~~G~~~~ad~vI~t~P~~~l~~~l~------~~~~~  287 (513)
T 4gde_A          216 PARGGTGGIWIAVANTLPKEKTRFGEKGKVTKVNANNKTV--TLQDGTTIGYKKLVSTMAVDFLAEAMN------DQELV  287 (513)
T ss_dssp             ESSSHHHHHHHHHHHTSCGGGEEESGGGCEEEEETTTTEE--EETTSCEEEEEEEEECSCHHHHHHHTT------CHHHH
T ss_pred             cccCCHHHHHHHHHHHHHhcCeeeecceEEEEEEccCCEE--EEcCCCEEECCEEEECCCHHHHHHhcC------chhhH
Confidence            357999999999975     66899999999999887754  568999999999999999998766431      34456


Q ss_pred             HHHHHcCCcceeEEEEEccCCCCC---CCccceeecCCCCc-----------------------eeeeecc----ccCCC
Q 010542          314 AAIDDLGVGIENKIIMHFDKVFWP---NVEFLGVVSDTSYG-----------------------CSYFLNL----HKATG  363 (507)
Q Consensus       314 ~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~g~~~~~~~~-----------------------~~~~~~~----~~~~~  363 (507)
                      .....++|.+...+.+.++.....   +..+.. +.+....                       ...+.+.    ..+.+
T Consensus       288 ~~~~~l~y~~~~~v~l~~~~~~~~~~~~~~~~y-~~~~~~~f~Ri~~~~n~sp~~~p~~~~~~~~~~~~~~~~~~~~~~~  366 (513)
T 4gde_A          288 GLTKQLFYSSTHVIGVGVRGSRPERIGDKCWLY-FPEDNCPFYRATIFSNYSPYNQPEASAALPTMQLADGSRPQSTEAK  366 (513)
T ss_dssp             HHHTTCCEEEEEEEEEEEESSCCTTTTTCCEEE-CCSTTCSCSEEECGGGTCGGGSCCTTCCEECCEETTSCCCSCCSEE
T ss_pred             hhhhcccCCceEEEEEEEeccccccccccceee-ccCCCCceeEEEecCCCCcccCCCCCceEEEEEeccCCCcccccCC
Confidence            677889998888888887643321   111110 1110000                       0001110    01112


Q ss_pred             ceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhCCCCCCC--cEEEeccCCCCCCCCcccccCCCCC---chHHHHHh
Q 010542          364 HCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSP--IQYLVSHWGTDANSLGSYSYDTVGK---SHDLYERL  438 (507)
Q Consensus       364 ~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p~~~~~--~~~~~~~w~~~~~~~g~~~~~~~~~---~~~~~~~~  438 (507)
                      ...+.++..+.....+..+++|++++.++++|.++.+....+  ....+.+|+   ++++.|.   .++   ....++.+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~de~l~~~~~~~L~~~~~i~~~~~i~~~~v~r~~---~ayP~y~---~~~~~~~~~~~~~l  440 (513)
T 4gde_A          367 EGPYWSIMLEVSESSMKPVNQETILADCIQGLVNTEMLKPTDEIVSTYHRRFD---HGYPTPT---LEREGTLTQILPKL  440 (513)
T ss_dssp             CCCEEEEEEEEEEBTTBCCCTTTHHHHHHHHHHHTTSSCTTCEEEEEEEEEEE---EEEECCB---TTHHHHHHHHHHHH
T ss_pred             cceEEEEEecccchhccCCCHHHHHHHHHHHHHHhcCCCCccceEEEEEEECC---CeecccC---HhHHHHHHHHHHHH
Confidence            223333333333345667899999999999999997644333  456677784   3333332   333   23344444


Q ss_pred             cCCCCceEEeeccccCcCC-chhhHHHHHHHHHHHHHHH
Q 010542          439 RIPVDNLFFAGEATSMSYP-GSVHGAFSTGLMAAEDCRM  476 (507)
Q Consensus       439 ~~~~~~l~~aG~~~~~~~~-g~~egA~~SG~~aA~~i~~  476 (507)
                      ..  +|||++|......|. ++|++|+.+|+.||++|+.
T Consensus       441 ~~--~~l~~~GR~g~~~Y~~~n~D~a~~~g~~aa~~I~~  477 (513)
T 4gde_A          441 QD--KDIWSRGRFGSWRYEVGNQDHSFMLGVEAVDNIVN  477 (513)
T ss_dssp             HH--TTEEECSTTTTCCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             hh--cCcEEecCCcccCcCCCCHHHHHHHHHHHHHHHHc
Confidence            44  599999987655553 5899999999999999985

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=100.00  E-value=5.2e-34  Score=286.27  Aligned_cols=387  Identities=16%  Similarity=0.120  Sum_probs=243.6

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCee--e
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY--R  106 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~--~  106 (507)
                      +||+|||||++||+||++|+++|++|+|||+++++||++++....|+.+|.|++++.+......+.++++++|+...  .
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~   80 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLPYKGFQLSTGALHMIPHGEDGPLAHLLRILGAKVEIVN   80 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSEEEETTEEEESSSCSEETTTTSSHHHHHHHHHTCCCCEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEEeccCCEEEecCCeEEEccCCChHHHHHHHHhCCcceEEE
Confidence            58999999999999999999999999999999999999999999999999998777654455678899999998632  2


Q ss_pred             ecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHH
Q 010542          107 TSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISI  186 (507)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (507)
                      ......+.+.+....  +.                 .....+......    .+..+....... .....+.++.+++..
T Consensus        81 ~~~~~~~~~~g~~~~--~~-----------------~~~~~l~~~~~~----~~~~~~~~~~~~-~~~~~~~s~~~~l~~  136 (421)
T 3nrn_A           81 SNPKGKILWEGKIFH--YR-----------------ESWKFLSVKEKA----KALKLLAEIRMN-KLPKEEIPADEWIKE  136 (421)
T ss_dssp             CSSSCEEEETTEEEE--GG-----------------GGGGGCC------------CCHHHHHTT-CCCCCCSBHHHHHHH
T ss_pred             CCCCeEEEECCEEEE--cC-----------------CchhhCCHhHHH----HHHHHHHHHHhc-cCCCCCCCHHHHHHH
Confidence            222222222111000  00                 000001111000    011111111110 112334778887764


Q ss_pred             HhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCc---cccccCCccccccchHHHHHHHhc-----cCCc
Q 010542          187 VFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDK---EELLPGGHGLMVRGYLPVINTLAK-----GLDI  257 (507)
Q Consensus       187 ~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~---~~~~~~~~~~~~~G~~~l~~~l~~-----g~~i  257 (507)
                      .          +++++.++.++.++ ...++.++..+++.....   .....++..++.+|++.++++|.+     |++|
T Consensus       137 ~----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~gG~~~l~~~l~~~~~~~G~~i  206 (421)
T 3nrn_A          137 K----------IGENEFLLSVLESFAGWADSVSLSDLTALELAKEIRAALRWGGPGLIRGGCKAVIDELERIIMENKGKI  206 (421)
T ss_dssp             H----------TCCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHHHHCSCEEETTCHHHHHHHHHHHHHTTTCEE
T ss_pred             h----------cCCcHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHHhhcCCcceecCCHHHHHHHHHHHHHHCCCEE
Confidence            3          13444555555554 345666766766543321   112245667899999999998864     8899


Q ss_pred             ccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcceeEEEEEccCCCCC
Q 010542          258 RLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWP  337 (507)
Q Consensus       258 ~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  337 (507)
                      ++|++|++|..+++++ | +.+|+++.||+||+|+++..+.+++ . .+.+|+...+.+.++.+.+..++++.++.+..+
T Consensus       207 ~~~~~V~~i~~~~~~v-V-~~~g~~~~ad~Vv~a~~~~~~~~ll-~-~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~  282 (421)
T 3nrn_A          207 LTRKEVVEINIEEKKV-Y-TRDNEEYSFDVAISNVGVRETVKLI-G-RDYFDRDYLKQVDSIEPSEGIKFNLAVPGEPRI  282 (421)
T ss_dssp             ESSCCEEEEETTTTEE-E-ETTCCEEECSEEEECSCHHHHHHHH-C-GGGSCHHHHHHHHTCCCCCEEEEEEEEESSCSS
T ss_pred             EcCCeEEEEEEECCEE-E-EeCCcEEEeCEEEECCCHHHHHHhc-C-cccCCHHHHHHHhCCCCCceEEEEEEEcCCccc
Confidence            9999999999988888 6 4577799999999999998876532 1 134677778888999998888899999877544


Q ss_pred             CCccceeecCCCCc--e---eeeeccccCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhCCCCCCCcEEEecc
Q 010542          338 NVEFLGVVSDTSYG--C---SYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSH  412 (507)
Q Consensus       338 ~~~~~g~~~~~~~~--~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p~~~~~~~~~~~~  412 (507)
                      ...+  ++.++...  .   ...+....|+|+.++.++....      ..+.++..+.++++|++++|   ......+.+
T Consensus       283 ~~~~--~~~~~~~~~~i~~~s~~~p~~ap~G~~~~~~~~~~~------~~~~~~~~~~~~~~L~~~~p---~~~~~~~~~  351 (421)
T 3nrn_A          283 GNTI--VFTPGLMINGFNEPSALDKSLAREGYTLIMAHMALK------NGNVKKAIEKGWEELLEIFP---EGEPLLAQV  351 (421)
T ss_dssp             CSSE--EECTTSSSCEEECGGGTCGGGSCTTEEEEEEEEECT------TCCHHHHHHHHHHHHHHHCT---TCEEEEEEE
T ss_pred             CCeE--EEcCCcceeeEeccCCCCCCcCCCCceEEEEEEeec------cccHHHHHHHHHHHHHHHcC---CCeEEEeee
Confidence            3222  11111101  1   1112223466777666554221      23445669999999999999   334445677


Q ss_pred             CCCCCCCCcccccCCCCCchHHHHHhcCCCCceEEeeccccCcCCchhhHHHHHHHHHHHHH
Q 010542          413 WGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDC  474 (507)
Q Consensus       413 w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i  474 (507)
                      |...   .+.+. ..++..   .+  .++ +|||+|||++.+.+.-.||||+.||.+||+.|
T Consensus       352 ~~~~---~p~~~-~~~~~~---~~--~~~-~gl~laGd~~~~~~g~~~~ga~~sg~~aA~~l  403 (421)
T 3nrn_A          352 YRDG---NPVNR-TRAGLH---IE--WPL-NEVLVVGDGYRPPGGIEVDGIALGVMKALEKL  403 (421)
T ss_dssp             C-----------------C---CC--CCC-SSEEECSTTCCCTTCCHHHHHHHHHHHHHHHT
T ss_pred             ccCC---CCccc-ccCCCC---CC--CCC-CcEEEECCcccCCCceeeehHHHHHHHHHHHh
Confidence            7542   11111 011111   11  567 99999999998742225699999999999987

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=100.00  E-value=1.7e-32  Score=278.58  Aligned_cols=402  Identities=13%  Similarity=0.117  Sum_probs=259.1

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCC-CeEEEEecCCCCCceeEec-cCCCeeeecCCceeeCCCCCCchHHHHHhcCCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRDRVGGRVHTD-YSFGFPVDLGASWLHGVCQENPLAPVISRLGLP  103 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~~~~GG~~~s~-~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~  103 (507)
                      .+.+||+|||||++||+||++|+++| .+|+|+|+++++||++++. ...|+.+|.|++++..  ....+.++++++.-+
T Consensus         7 ~~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~~~~~~g~~~~~g~~~~~~--~~~~~~~l~~~~~~~   84 (484)
T 4dsg_A            7 LLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIFS--HYQYFDDVMDWAVQG   84 (484)
T ss_dssp             CCSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCEEECTTSCEEESSCCCBCC--SBHHHHHHHHHHCSC
T ss_pred             ccCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeeeeecCCCcEEeeCCccccc--ChHHHHHHHHHHhhh
Confidence            35689999999999999999999998 7999999999999999994 6789999999998863  445678888887532


Q ss_pred             eeeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHH
Q 010542          104 LYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRA  183 (507)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (507)
                      .........+.+.+....    .+             +......++.....   ..+..++..  +......++.++.++
T Consensus        85 ~~~~~~~~~~~~~g~~~~----~P-------------~~~~~~~l~~~~~~---~~~~~ll~~--~~~~~~~~~~s~~e~  142 (484)
T 4dsg_A           85 WNVLQRESWVWVRGRWVP----YP-------------FQNNIHRLPEQDRK---RCLDELVRS--HARTYTEPPNNFEES  142 (484)
T ss_dssp             EEEEECCCEEEETTEEEE----SS-------------GGGCGGGSCHHHHH---HHHHHHHHH--HHCCCSSCCSSHHHH
T ss_pred             hhhccCceEEEECCEEEE----eC-------------ccchhhhCCHHHHH---HHHHHHHHH--HhccCCCCCCCHHHH
Confidence            222222221222211110    00             00001112222111   111222221  112234567899998


Q ss_pred             HHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCccccc---------------------cCCcccc-
Q 010542          184 ISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEELL---------------------PGGHGLM-  240 (507)
Q Consensus       184 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~---------------------~~~~~~~-  240 (507)
                      +..           .++.++.+.++.++ .+.|+.+++++++.+.......                     .+...++ 
T Consensus       143 ~~~-----------~~g~~~~~~~~~p~~~~v~~~~~~~ls~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~f~yp~  211 (484)
T 4dsg_A          143 FTR-----------QFGEGIADIFMRPYNFKVWAVPPCLMSTEWVEERVAPVDLERIRRNIQENRDDLGWGPNATFRFPQ  211 (484)
T ss_dssp             HHH-----------HHHHHHCCCCCHHHHHHHHSSCGGGBCSSSCTTTSCCCCHHHHHHHHHHTCCCCCCSTTSEEEEES
T ss_pred             HHH-----------HhHHHHHHHHHHHHHhhhcCCCHHHhcHHHHhccccCCCHHHHHHHHhhcccccCCCccceEEeec
Confidence            763           36666666666665 4688888888888764321110                     1111223 


Q ss_pred             ccchHHHHHHHhccC---CcccC--ceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHH
Q 010542          241 VRGYLPVINTLAKGL---DIRLG--HRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAA  315 (507)
Q Consensus       241 ~~G~~~l~~~l~~g~---~i~~~--~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~  315 (507)
                      .+|++.++++|++.+   +|+++  ++|++|..++++|+  +.+|+++.||+||+|+|++.+.+++....+++|+...+.
T Consensus       212 ~gG~~~l~~~la~~l~~~~i~~~~~~~V~~I~~~~~~v~--~~~G~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~  289 (484)
T 4dsg_A          212 RGGTGIIYQAIKEKLPSEKLTFNSGFQAIAIDADAKTIT--FSNGEVVSYDYLISTVPFDNLLRMTKGTGFKGYDEWPAI  289 (484)
T ss_dssp             SSCTHHHHHHHHHHSCGGGEEECGGGCEEEEETTTTEEE--ETTSCEEECSEEEECSCHHHHHHHEECSSCTTGGGHHHH
T ss_pred             CCCHHHHHHHHHhhhhhCeEEECCCceeEEEEecCCEEE--ECCCCEEECCEEEECCCHHHHHHHhhccCCCCCHHHHHH
Confidence            489999999999866   79999  56999999888654  478889999999999999988765433345578888899


Q ss_pred             HHHcCCcceeEEEEEccCCCCCC-CccceeecCCCC----ceeeeecc---ccCCCceEEEEEeccchhHHHhcCCHHHH
Q 010542          316 IDDLGVGIENKIIMHFDKVFWPN-VEFLGVVSDTSY----GCSYFLNL---HKATGHCVLVYMPAGQLARDIEKMSDEAA  387 (507)
Q Consensus       316 ~~~~~~~~~~~~~l~~~~~~~~~-~~~~g~~~~~~~----~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~ee~  387 (507)
                      +..++|.+..++.+.|+.+...+ .+..++..++..    ....+.+.   ..++++.+++..+...   .....+++++
T Consensus       290 l~~l~y~s~~~v~l~~~~~~~~~~~~~~~i~vp~~~~~~~ri~~~s~~~p~~ap~g~~~l~~e~~~~---~~~~~~d~~l  366 (484)
T 4dsg_A          290 ADKMVYSSTNVIGIGVKGTPPPHLKTACWLYFPEDTSPFYRATVFSNYSKYNVPEGHWSLMLEVSES---KYKPVNHSTL  366 (484)
T ss_dssp             HHHCCEEEEEEEEEEEESCCCGGGTTCCEEECCSTTCSCSEEECGGGTCGGGSCTTEEEEEEEEEEB---TTBCCCTTSH
T ss_pred             HhCCCcCceEEEEEEEcCCCcccCCCCeEEEEEcCCCeEEEEEeecCCCcccCCCCeEEEEEEEecC---cCCcCCHHHH
Confidence            99999999999999998763211 122333333211    11222222   2356666666555433   3446789999


Q ss_pred             HHHHHHHHHHhCCCCC-CCc-EEEeccCCCCCCCCcccccCCCCCc---hHHHHHhcCCCCceEEeeccccCcCC-chhh
Q 010542          388 ANFAFTQLKKILPDAS-SPI-QYLVSHWGTDANSLGSYSYDTVGKS---HDLYERLRIPVDNLFFAGEATSMSYP-GSVH  461 (507)
Q Consensus       388 ~~~~~~~L~~~~p~~~-~~~-~~~~~~w~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~l~~aG~~~~~~~~-g~~e  461 (507)
                      ++.++++|.++..-.. +++ ...+.+|..   +++.|   .+++.   ...++.+.+ . ||+++|.+....+. +.++
T Consensus       367 ~~~a~~~L~~~~~~~~~~~~~~~~v~r~~~---~yP~y---~~~~~~~~~~~~~~l~~-~-~l~~~Gr~g~~~y~v~~~d  438 (484)
T 4dsg_A          367 IEDCIVGCLASNLLLPEDLLVSKWHYRIEK---GYPTP---FIGRNNLLEKAQPELMS-R-CIYSRGRFGAWRYEVGNQD  438 (484)
T ss_dssp             HHHHHHHHHHTTSCCTTCCEEEEEEEEEEE---EEECC---BTTHHHHHHHHHHHHHH-T-TEEECSTTTTCCGGGCSHH
T ss_pred             HHHHHHHHHHcCCCCccceEEEEEEEEeCc---cccCC---CccHHHHHHHHHHHHHh-C-CcEeecCCcccccCCCChH
Confidence            9999999999853221 232 345677732   23323   34432   233444443 3 99999997655441 3699


Q ss_pred             HHHHHHHHHHHHHH
Q 010542          462 GAFSTGLMAAEDCR  475 (507)
Q Consensus       462 gA~~SG~~aA~~i~  475 (507)
                      .|+.||+.||++|+
T Consensus       439 ~~i~sg~~aa~~i~  452 (484)
T 4dsg_A          439 HSFMQGVEAIDHVL  452 (484)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999987

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.97  E-value=1.1e-30  Score=262.48  Aligned_cols=392  Identities=16%  Similarity=0.152  Sum_probs=227.9

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCC-CeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCe
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL  104 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~  104 (507)
                      .+.+||+|||||++||+||++|+++| ++|+|+|+++++||+++|....|+.+|.|++++.  ..+..+.++++++|++.
T Consensus         4 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~~~G~~~d~G~~~~~--~~~~~~~~l~~~~g~~~   81 (424)
T 2b9w_A            4 SKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIMGV--PSYDTIQEIMDRTGDKV   81 (424)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCEETTEECCSSCCCBC--TTCHHHHHHHHHHCCCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccCCCCcccccCceeec--CCcHHHHHHHHHhCCcc
Confidence            35689999999999999999999999 8999999999999999998889999999999875  24567889999999875


Q ss_pred             eeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHH----hh-------c
Q 010542          105 YRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKV----RE-------E  173 (507)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-------~  173 (507)
                      ........+.+.++..                    ..........   ......+.++.......    ..       .
T Consensus        82 ~~~~~~~~~~~~~g~~--------------------~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  138 (424)
T 2b9w_A           82 DGPKLRREFLHEDGEI--------------------YVPEKDPVRG---PQVMAAVQKLGQLLATKYQGYDANGHYNKVH  138 (424)
T ss_dssp             CSCCCCEEEECTTSCE--------------------ECGGGCTTHH---HHHHHHHHHHHHHHHTTTTTTTSSSSSSCCC
T ss_pred             ccccccceeEcCCCCE--------------------eccccCcccc---hhHHHHHHHHHHHHhhhhhhcccccchhhhh
Confidence            4322222122111100                    0000000000   00111112222211110    00       0


Q ss_pred             CCCCCcHHHHHHHHhccChhHHhhhhHHHHHHHHHHhhhc-cccCCcccccccccCcc-------ccccCCccccccchH
Q 010542          174 HDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEG-WFAADAETISLKSWDKE-------ELLPGGHGLMVRGYL  245 (507)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~-------~~~~~~~~~~~~G~~  245 (507)
                      .....++.+++...          ..+ .+.+.+..++.. .++ ++...++..+...       ....++...+.+|++
T Consensus       139 ~~~~~s~~~~l~~~----------~~~-~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~  206 (424)
T 2b9w_A          139 EDLMLPFDEFLALN----------GCE-AARDLWINPFTAFGYG-HFDNVPAAYVLKYLDFVTMMSFAKGDLWTWADGTQ  206 (424)
T ss_dssp             GGGGSBHHHHHHHT----------TCG-GGHHHHTTTTCCCCCC-CTTTSBHHHHHHHSCHHHHHHHHHTCCBCCTTCHH
T ss_pred             hhhccCHHHHHHhh----------CcH-HHHHHHHHHHHhhccC-ChHhcCHHHHHHhhhHhhhhcccCCceEEeCChHH
Confidence            11245777776532          122 233444444432 333 3444444332110       012344567889999


Q ss_pred             HHHHHHhcc--CCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcc
Q 010542          246 PVINTLAKG--LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGI  323 (507)
Q Consensus       246 ~l~~~l~~g--~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~  323 (507)
                      .++++|.+.  .+|++|++|++|..+++++.|++.+| ++.||+||+|+|+..+..+    .+++++ ..+.+.++.+..
T Consensus       207 ~l~~~l~~~l~~~v~~~~~V~~i~~~~~~v~v~~~~g-~~~ad~Vv~a~~~~~~~~~----l~~~~~-~~~~~~~~~~~~  280 (424)
T 2b9w_A          207 AMFEHLNATLEHPAERNVDITRITREDGKVHIHTTDW-DRESDVLVLTVPLEKFLDY----SDADDD-EREYFSKIIHQQ  280 (424)
T ss_dssp             HHHHHHHHHSSSCCBCSCCEEEEECCTTCEEEEESSC-EEEESEEEECSCHHHHTTS----BCCCHH-HHHHHTTCEEEE
T ss_pred             HHHHHHHHhhcceEEcCCEEEEEEEECCEEEEEECCC-eEEcCEEEECCCHHHHhhc----cCCCHH-HHHHHhcCCcce
Confidence            999999874  47999999999999888899998888 5999999999999876432    343433 344556666544


Q ss_pred             eeEEEEEccCCCCCCCccceeecCC----CC-ceeeeeccccCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHh
Q 010542          324 ENKIIMHFDKVFWPNVEFLGVVSDT----SY-GCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKI  398 (507)
Q Consensus       324 ~~~~~l~~~~~~~~~~~~~g~~~~~----~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~  398 (507)
                      .. +.+.+...+ +.  +.+++..+    .. ...+.....+.+...++++|..... ..+.+.+++++++.++++|.++
T Consensus       281 ~~-~~~~~~~~~-~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~v~~~l~~l  355 (424)
T 2b9w_A          281 YM-VDACLVKEY-PT--ISGYVPDNMRPERLGHVMVYYHRWADDPHQIITTYLLRNH-PDYADKTQEECRQMVLDDMETF  355 (424)
T ss_dssp             EE-EEEEEESSC-CS--SEEECGGGGSGGGTTSCCEEEECCTTCTTSCEEEEEECCB-TTBCCCCHHHHHHHHHHHHHHT
T ss_pred             eE-EEEEEeccC-Cc--ccccccCCCCCcCCCcceEEeeecCCCCceEEEEEeccCC-CcccccChHHHHHHHHHHHHHc
Confidence            32 222222222 11  12222211    00 0111111111222345666655432 3456778999999999999995


Q ss_pred             CCCCCCCcEEEeccCCCCCCCC-cccccCCCCCchHHHHHhcCCCCceEEeeccccCcCCchhhHHHHHHHHHHHHHH
Q 010542          399 LPDASSPIQYLVSHWGTDANSL-GSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR  475 (507)
Q Consensus       399 ~p~~~~~~~~~~~~w~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~  475 (507)
                      .+..  +..+....|...+... ..+   ..|..  .+..-.++.+|+||||++++.   |++|+|+.||.++|++++
T Consensus       356 ~~~~--~~~~~~~~w~~~p~~~~~~~---~~G~~--~~~~~~~~~~~l~~aG~~~~~---g~~e~a~~Sg~~aA~~~l  423 (424)
T 2b9w_A          356 GHPV--EKIIEEQTWYYFPHVSSEDY---KAGWY--EKVEGMQGRRNTFYAGEIMSF---GNFDEVCHYSKDLVTRFF  423 (424)
T ss_dssp             TCCE--EEEEEEEEEEEEEECCHHHH---HTTHH--HHHHHTTTGGGEEECSGGGSC---SSHHHHHHHHHHHHHHHT
T ss_pred             CCcc--cccccccceeeeeccCHHHH---hccHH--HHHHHHhCCCCceEecccccc---ccHHHHHHHHHHHHHHhc
Confidence            3321  1112233453211100 001   01111  111123556899999998764   899999999999999875

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=99.94  E-value=1.3e-26  Score=229.64  Aligned_cols=253  Identities=14%  Similarity=0.172  Sum_probs=157.8

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhC-CCeEEEEecCCCCCceeEeccC--CCeeee-cCCceeeCCCCCCchHHHHHhcC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRDRVGGRVHTDYS--FGFPVD-LGASWLHGVCQENPLAPVISRLG  101 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~-G~~V~vlE~~~~~GG~~~s~~~--~g~~~d-~G~~~~~~~~~~~~~~~l~~~lg  101 (507)
                      .+++||+|||||++||+||++|+++ |++|+|+|+++++||+++|...  .|+.+| .|+++++.  .+..+.++++++|
T Consensus         5 ~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~--~~~~~~~~~~~~g   82 (399)
T 1v0j_A            5 TARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQTGIEVHKYGAHLFHT--SNKRVWDYVRQFT   82 (399)
T ss_dssp             CCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEEECTTTCCEEETTSCCCEEE--SCHHHHHHHTTTC
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeeccccCCCEEEEeCCCcEEcC--CcHHHHHHHHHhh
Confidence            3478999999999999999999999 9999999999999999999877  688885 99998873  4567899999998


Q ss_pred             CCeeeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHH
Q 010542          102 LPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQ  181 (507)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (507)
                      +-  ........++.++...+ ++.....      +..++...   +.+       +....++...... ....++.++.
T Consensus        83 ~~--~~~~~~~~~~~~G~~~~-~p~~~~~------~~~l~~~~---~~~-------~~~~~~l~~~~~~-~~~~~~~s~~  142 (399)
T 1v0j_A           83 DF--TDYRHRVFAMHNGQAYQ-FPMGLGL------VSQFFGKY---FTP-------EQARQLIAEQAAE-IDTADAQNLE  142 (399)
T ss_dssp             CB--CCCCCCEEEEETTEEEE-ESSSHHH------HHHHHTSC---CCH-------HHHHHHHHHHGGG-SCTTC----C
T ss_pred             hh--hccccceEEEECCEEEe-CCCCHHH------HHHHhccc---CCH-------HHHHHHHHHHhhc-cCCCCcccHH
Confidence            72  11111111111111000 0000000      00000000   000       0111111111100 0123456777


Q ss_pred             HHHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCc---ccc-----ccCCc-cccccchHHHHHHH
Q 010542          182 RAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDK---EEL-----LPGGH-GLMVRGYLPVINTL  251 (507)
Q Consensus       182 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~---~~~-----~~~~~-~~~~~G~~~l~~~l  251 (507)
                      +++..           .+++++.+.++.++ ...++.+++++++.....   ...     ..... +++++|++.++++|
T Consensus       143 e~l~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~l  211 (399)
T 1v0j_A          143 EKAIS-----------LIGRPLYEAFVKGYTAKQWQTDPKELPAANITRLPVRYTFDNRYFSDTYEGLPTDGYTAWLQNM  211 (399)
T ss_dssp             CHHHH-----------HHCHHHHHHHTHHHHHHHHTSCGGGSCGGGCSCCCCCSSSCCCSCCCSEEECBTTHHHHHHHHH
T ss_pred             HHHHH-----------HHhHHHHHHHHHHHHHhhcCCChhhcChHhhhcceeEeccccchhhhhhcccccccHHHHHHHH
Confidence            77652           46677777777776 467888888888766521   111     11122 37899999999999


Q ss_pred             hc--cCCcccCceeEEEEeeCCcEEEEEcCCcEE-EcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcceeEEE
Q 010542          252 AK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTF-VADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKII  328 (507)
Q Consensus       252 ~~--g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~-~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~~  328 (507)
                      ++  |++|++|++|++|...   |     +  ++ .||+||+|+|+..+.++              .+..++|.+...+.
T Consensus       212 ~~~~g~~I~l~~~V~~I~~~---v-----~--~~~~aD~VI~t~p~~~l~~~--------------~l~~l~y~s~~~~~  267 (399)
T 1v0j_A          212 AADHRIEVRLNTDWFDVRGQ---L-----R--PGSPAAPVVYTGPLDRYFDY--------------AEGRLGWRTLDFEV  267 (399)
T ss_dssp             TCSTTEEEECSCCHHHHHHH---H-----T--TTSTTCCEEECSCHHHHTTT--------------TTCCCCEEEEEEEE
T ss_pred             HhcCCeEEEECCchhhhhhh---h-----h--hcccCCEEEECCcHHHHHhh--------------hhCCCCcceEEEEE
Confidence            87  5689999999998643   2     1  34 69999999999987543              23467787777777


Q ss_pred             EEccCCC
Q 010542          329 MHFDKVF  335 (507)
Q Consensus       329 l~~~~~~  335 (507)
                      +.++.+.
T Consensus       268 ~~~~~~~  274 (399)
T 1v0j_A          268 EVLPIGD  274 (399)
T ss_dssp             EEESSSC
T ss_pred             EEEcccc
Confidence            8887653

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=99.93  E-value=2.6e-25  Score=217.71  Aligned_cols=251  Identities=16%  Similarity=0.217  Sum_probs=164.4

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeee-cCCceeeCCCCCCchHHHHHhcCCCeee
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVD-LGASWLHGVCQENPLAPVISRLGLPLYR  106 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d-~G~~~~~~~~~~~~~~~l~~~lg~~~~~  106 (507)
                      ++||+|||||++||+||++|+++|++|+|+|+++++||++++....|+.+| .|+++++.  .+..+.+++++++.-. +
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~~G~~~~~~--~~~~~~~~~~~l~~~~-~   77 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHT--NDKYIWDYVNDLVEFN-R   77 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEETTEEEETTSCCCEEE--SCHHHHHHHHTTSCBC-C
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEeeccCCceeeccCCceecC--CCHHHHHHHHHhhhhh-h
Confidence            369999999999999999999999999999999999999999877899995 99998874  3456788888887522 1


Q ss_pred             ecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHH
Q 010542          107 TSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISI  186 (507)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (507)
                      ........+.+....  ++..   +   ..+..++...   .        ...+.+++...... ....++.++++++..
T Consensus        78 ~~~~~~~~~~g~~~~--~p~~---~---~~~~~l~~~~---~--------~~~~~~~l~~~~~~-~~~~~~~s~~~~~~~  137 (367)
T 1i8t_A           78 FTNSPLAIYKDKLFN--LPFN---M---NTFHQMWGVK---D--------PQEAQNIINAQKKK-YGDKVPENLEEQAIS  137 (367)
T ss_dssp             CCCCCEEEETTEEEE--SSBS---H---HHHHHHHCCC---C--------HHHHHHHHHHHTTT-TCCCCCCSHHHHHHH
T ss_pred             ccccceEEECCeEEE--cCCC---H---HHHHHHhccC---C--------HHHHHHHHHHHhhc-cCCCCCccHHHHHHH
Confidence            111111111111100  0000   0   0000000000   0        01112222222111 122457789888763


Q ss_pred             HhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCc---cc-----cccCCc-cccccchHHHHHHHhccCC
Q 010542          187 VFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDK---EE-----LLPGGH-GLMVRGYLPVINTLAKGLD  256 (507)
Q Consensus       187 ~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~---~~-----~~~~~~-~~~~~G~~~l~~~l~~g~~  256 (507)
                                 .+++++.+.++.++ ...++.+++++++.....   ..     +..+.+ +++++|++.++++|.+|++
T Consensus       138 -----------~~g~~~~~~~~~p~~~~~~~~~~~~lsa~~~~~l~~~~~~~~~~~~~~~~~~p~gG~~~l~~~l~~g~~  206 (367)
T 1i8t_A          138 -----------LVGEDLYQALIKGYTEKQWGRSAKELPAFIIKRIPVRFTFDNNYFSDRYQGIPVGGYTKLIEKMLEGVD  206 (367)
T ss_dssp             -----------HHHHHHHHHHTHHHHHHHHSSCGGGSCTTSSCCCCBCSSSCCCSCCCSEEECBTTCHHHHHHHHHTTSE
T ss_pred             -----------HHhHHHHHHHHHHHHhhhhCCChHHcCHHHHhhceeeeccccccccchhhcccCCCHHHHHHHHhcCCE
Confidence                       37778888888886 468889998988765521   11     112223 3889999999999999999


Q ss_pred             cccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcceeEEEEEccCCCC
Q 010542          257 IRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW  336 (507)
Q Consensus       257 i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~  336 (507)
                      |++|++|++|...   |        .+.||+||+|+|+..+..+              .+..++|.+...+.+.++.+.+
T Consensus       207 i~l~~~V~~i~~~---v--------~~~~D~VV~a~p~~~~~~~--------------~l~~l~y~s~~~v~~~~d~~~~  261 (367)
T 1i8t_A          207 VKLGIDFLKDKDS---L--------ASKAHRIIYTGPIDQYFDY--------------RFGALEYRSLKFETERHEFPNF  261 (367)
T ss_dssp             EECSCCGGGSHHH---H--------HTTEEEEEECSCHHHHTTT--------------TTCCCCEEEEEEEEEEESSSCS
T ss_pred             EEeCCceeeechh---h--------hccCCEEEEeccHHHHHHH--------------hhCCCCCceEEEEEEEeccccC
Confidence            9999999988631   2        2458999999999876432              2346778777777788887655


Q ss_pred             C
Q 010542          337 P  337 (507)
Q Consensus       337 ~  337 (507)
                      +
T Consensus       262 ~  262 (367)
T 1i8t_A          262 Q  262 (367)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=99.92  E-value=6.6e-25  Score=216.00  Aligned_cols=242  Identities=13%  Similarity=0.225  Sum_probs=159.0

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccC--CCeee-ecCCceeeCCCCCCchHHHHHhcCCCe
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS--FGFPV-DLGASWLHGVCQENPLAPVISRLGLPL  104 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~--~g~~~-d~G~~~~~~~~~~~~~~~l~~~lg~~~  104 (507)
                      ++||+|||||++||++|+.|+++|++|+|+|+++++||++++...  .|+.+ |.|+++++.  .+..+.+++++++.- 
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~--~~~~~~~~~~~l~~~-   79 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHT--DNETVWNYVNKHAEM-   79 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEE--SCHHHHHHHHTTSCE-
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCccccccccCCCceEeeCCceEECC--CCHHHHHHHHHHhhh-
Confidence            479999999999999999999999999999999999999999776  68876 899999974  456789999999862 


Q ss_pred             eeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHH
Q 010542          105 YRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAI  184 (507)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (507)
                      .+........+.+....  ++.....      ...++...  ..+.+        +.+++.....  ....++.++.+++
T Consensus        80 ~~~~~~~~~~~~g~~~~--~P~~~~~------~~~l~~~~--~~~~~--------~~~~l~~~~~--~~~~~~~sl~e~~  139 (384)
T 2bi7_A           80 MPYVNRVKATVNGQVFS--LPINLHT------INQFFSKT--CSPDE--------ARALIAEKGD--STIADPQTFEEEA  139 (384)
T ss_dssp             EECCCCEEEEETTEEEE--ESCCHHH------HHHHTTCC--CCHHH--------HHHHHHHHSC--CSCSSCCBHHHHH
T ss_pred             cccccceEEEECCEEEE--CCCChhH------HHHHhccc--CCHHH--------HHHHHHHhhh--ccCCCCcCHHHHH
Confidence            22111111111111100  0000000      00000000  00111        1111111111  1124577898887


Q ss_pred             HHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCc--------cccccCCc-cccccchHHHHHHHhc-
Q 010542          185 SIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDK--------EELLPGGH-GLMVRGYLPVINTLAK-  253 (507)
Q Consensus       185 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~--------~~~~~~~~-~~~~~G~~~l~~~l~~-  253 (507)
                      ..           .+++++.+.++.++ .+.|+.+++++++.....        ..++.+.+ +++++|++.++++|.+ 
T Consensus       140 ~~-----------~~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~r~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~l~~~  208 (384)
T 2bi7_A          140 LR-----------FIGKELYEAFFKGYTIKQWGMQPSELPASILKRLPVRFNYDDNYFNHKFQGMPKCGYTQMIKSILNH  208 (384)
T ss_dssp             HH-----------HHCHHHHHHHTHHHHHHHHSSCGGGSBGGGCCSCCCCSSSCCCSCCCSEEEEETTHHHHHHHHHHCS
T ss_pred             HH-----------hhcHHHHHHHHHHHHHHHhCCCHHHhCHHHHhccccccccccccccccccEEECcCHHHHHHHHHhc
Confidence            63           36677788887775 568888888888766420        11222333 3889999999999997 


Q ss_pred             -cCCcccCceeE-EEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcceeEEEEEc
Q 010542          254 -GLDIRLGHRVT-KITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHF  331 (507)
Q Consensus       254 -g~~i~~~~~V~-~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~  331 (507)
                       |++|++|++|+ +|..               .||+||+|+|++.+.++              .+..++|.+...+.+.+
T Consensus       209 ~g~~I~l~~~V~~~i~~---------------~~d~VI~a~p~~~~~~~--------------~lg~l~y~s~~~v~~~~  259 (384)
T 2bi7_A          209 ENIKVDLQREFIVEERT---------------HYDHVFYSGPLDAFYGY--------------QYGRLGYRTLDFKKFTY  259 (384)
T ss_dssp             TTEEEEESCCCCGGGGG---------------GSSEEEECSCHHHHTTT--------------TTCCCCEEEEEEEEEEE
T ss_pred             CCCEEEECCeeehhhhc---------------cCCEEEEcCCHHHHHHh--------------hcCCCCcceEEEEEEEe
Confidence             67899999999 7753               29999999999987643              13457787777777777


Q ss_pred             c
Q 010542          332 D  332 (507)
Q Consensus       332 ~  332 (507)
                      |
T Consensus       260 d  260 (384)
T 2bi7_A          260 Q  260 (384)
T ss_dssp             E
T ss_pred             C
Confidence            6

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=99.90  E-value=7.8e-23  Score=199.73  Aligned_cols=252  Identities=12%  Similarity=0.167  Sum_probs=166.1

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEecc-CCCeee-ecCCceeeCCCCCCchHHHHHhcCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY-SFGFPV-DLGASWLHGVCQENPLAPVISRLGL  102 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~~g~~~-d~G~~~~~~~~~~~~~~~l~~~lg~  102 (507)
                      ....+||+|||||++||+||++|+++|++|+|+|+++++||++++.. ..|+.+ |.|+++++  .....+.+++++++.
T Consensus        26 ~~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~G~~~~~~G~~~~~--~~~~~~~~~~~~~~~  103 (397)
T 3hdq_A           26 ESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAGVLIHPYGPHIFH--TNSKDVFEYLSRFTE  103 (397)
T ss_dssp             CCCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCCEECTTSCEECTTSCCCCE--ESCHHHHHHHHTSCC
T ss_pred             cCCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccceeeccCCceEeecCCcccC--CChHHHHHHHHHhhh
Confidence            45679999999999999999999999999999999999999999876 678864 99999987  345678999999985


Q ss_pred             CeeeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHH
Q 010542          103 PLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQR  182 (507)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (507)
                      ..  ........+.++...+ ++...      ..+..++.   ..+..       .....++.   .......++.++++
T Consensus       104 ~~--~~~~~~~~~~~g~l~~-lP~~~------~~~~~l~~---~~~~~-------~~~~~~l~---~~~~~~~~~~s~~e  161 (397)
T 3hdq_A          104 WR--PYQHRVLASVDGQLLP-IPINL------DTVNRLYG---LNLTS-------FQVEEFFA---SVAEKVEQVRTSED  161 (397)
T ss_dssp             EE--ECCCBEEEEETTEEEE-ESCCH------HHHHHHHT---CCCCH-------HHHHHHHH---HHCCCCSSCCBHHH
T ss_pred             cc--cccccceEEECCEEEE-cCCCh------HHHHHhhc---cCCCH-------HHHHHHHh---hcccCCCCCcCHHH
Confidence            21  1111111111111000 00000      00000000   00000       11111111   11223456789999


Q ss_pred             HHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCcc---c-----cccCCc-cccccchHHHHHHHh
Q 010542          183 AISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKE---E-----LLPGGH-GLMVRGYLPVINTLA  252 (507)
Q Consensus       183 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~---~-----~~~~~~-~~~~~G~~~l~~~l~  252 (507)
                      ++..           .++.++.+.++.++ .+.|+.+++++|+..+...   .     ++.+.. +++.+|+.+++++|.
T Consensus       162 ~~~~-----------~~G~~~~e~~~~py~~k~~~~~~~~Lsa~~~~Rvp~~~~~d~~yf~~~~qg~P~gGy~~l~e~l~  230 (397)
T 3hdq_A          162 VVVS-----------KVGRDLYNKFFRGYTRKQWGLDPSELDASVTARVPTRTNRDNRYFADTYQAMPLHGYTRMFQNML  230 (397)
T ss_dssp             HHHH-----------HHHHHHHHHHTHHHHHHHHSSCGGGSBTTTGGGSCCCSSCCCBSCCCSEEEEETTCHHHHHHHHT
T ss_pred             HHHH-----------hcCHHHHHHHHHHHhCchhCCCHHHHHHHHHHhcCcccccCccchhhhheeccCCCHHHHHHHHH
Confidence            8873           47788888888886 5789999999997755411   1     112222 468999999999998


Q ss_pred             c--cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcceeEEEEE
Q 010542          253 K--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMH  330 (507)
Q Consensus       253 ~--g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~  330 (507)
                      +  |++|++|++|+++             +.++.+|+||+|+|++.+...              ....++|.+...+.+.
T Consensus       231 ~~~g~~V~l~~~v~~~-------------~~~~~~d~vI~T~P~d~~~~~--------------~~g~L~yrsl~~~~~~  283 (397)
T 3hdq_A          231 SSPNIKVMLNTDYREI-------------ADFIPFQHMIYTGPVDAFFDF--------------CYGKLPYRSLEFRHET  283 (397)
T ss_dssp             CSTTEEEEESCCGGGT-------------TTTSCEEEEEECSCHHHHTTT--------------TTCCCCEEEEEEEEEE
T ss_pred             hccCCEEEECCeEEec-------------cccccCCEEEEcCCHHHHHHH--------------hcCCCCCceEEEEEEE
Confidence            7  8899999999732             335679999999999876421              2446778777777788


Q ss_pred             ccCCCCCC
Q 010542          331 FDKVFWPN  338 (507)
Q Consensus       331 ~~~~~~~~  338 (507)
                      ++...+.+
T Consensus       284 ~~~~~~~~  291 (397)
T 3hdq_A          284 HDTEQLLP  291 (397)
T ss_dssp             ESSSCSCS
T ss_pred             eccccCCC
Confidence            88554443

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=99.87  E-value=8.7e-21  Score=191.18  Aligned_cols=244  Identities=12%  Similarity=0.118  Sum_probs=135.9

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCC-ee---------------eecCCceeeCCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFG-FP---------------VDLGASWLHGVC   88 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g-~~---------------~d~G~~~~~~~~   88 (507)
                      +...+||+|||||++||+||+.|+++|++|+|+|+++++||+++|...+| +.               ++.|.+++....
T Consensus         8 ~~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~~~d~~~~~~~~~~~~~~~g~~~~~~l~   87 (453)
T 2bcg_G            8 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDLI   87 (453)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCCCHHHHHHHHCCGGGCCEESS
T ss_pred             ccccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccceeccchhceeccCCccccCcchhcccccceeeccc
Confidence            34568999999999999999999999999999999999999999965544 21               344444432211


Q ss_pred             -----CCCchHHHHHhcCCCee--eecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHH
Q 010542           89 -----QENPLAPVISRLGLPLY--RTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFE  161 (507)
Q Consensus        89 -----~~~~~~~l~~~lg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (507)
                           ....+.++++++|+...  .......+.+.++.... ++....        . .+..  ....  ..  ....+.
T Consensus        88 P~~l~~~~~l~~ll~~lg~~~~l~~~~~~~~~~~~~g~~~~-~p~~~~--------~-~~~~--~l~~--~~--~~~~~~  151 (453)
T 2bcg_G           88 PKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYK-VPANEI--------E-AISS--PLMG--IF--EKRRMK  151 (453)
T ss_dssp             CCBEETTSHHHHHHHHHTGGGTCCEEECCCEEEEETTEEEE-CCSSHH--------H-HHHC--TTSC--HH--HHHHHH
T ss_pred             cceeecCcHHHHHHHhcCCccceEEEEccceeEEeCCeEEE-CCCChH--------H-HHhh--hccc--hh--hHHHHH
Confidence                 34577899999998521  11111111111110000 000000        0 0000  0000  00  112234


Q ss_pred             HHHHHHHHHhhc--------CCCCCcHHHHHHHHhccChhHHhhhhHHHHHHHHHHhhhc----cccCCccccccc---c
Q 010542          162 SILKETDKVREE--------HDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEG----WFAADAETISLK---S  226 (507)
Q Consensus       162 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~---~  226 (507)
                      +++..+......        .....++.++++.+          ..++.+.+.+......    .+...+...++.   .
T Consensus       152 ~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~----------~~~~~l~~~l~~~~~l~~~~~~~~~p~~~~~~~~~~  221 (453)
T 2bcg_G          152 KFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKF----------GLGNSTKEFIGHAMALWTNDDYLQQPARPSFERILL  221 (453)
T ss_dssp             HHHHHHHHCBTTBGGGSTTCCTTTSBHHHHHHHT----------TCCHHHHHHHHHHTSCCSSSGGGGSBHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCchhhhccccccCCHHHHHHHh----------CCCHHHHHHHHHHHHhccCccccCCchHHHHHHHHH
Confidence            444444332211        13456777776543          2233333322111110    111112222221   0


Q ss_pred             cCc--cccccCCccccccchHHHHHHHhc-----cCCcccCceeEEEEee--CCcEE-EEEcCCcEEEcCEEEEecCch
Q 010542          227 WDK--EELLPGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRH--YIGVK-VTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       227 ~~~--~~~~~~~~~~~~~G~~~l~~~l~~-----g~~i~~~~~V~~I~~~--~~~v~-v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      +..  ..+..+.+.++.+|++.++++|.+     |++|+++++|++|..+  ++++. |++ +|+++.||+||+|+++.
T Consensus       222 ~~~s~~~~~~~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~  299 (453)
T 2bcg_G          222 YCQSVARYGKSPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYF  299 (453)
T ss_dssp             HHHHHHHHSSCSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGC
T ss_pred             HHHHHHhhcCCceEeeCCCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCcc
Confidence            000  001123444889999999988864     8899999999999988  77764 555 58789999999999876

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.82  E-value=6.9e-18  Score=159.63  Aligned_cols=59  Identities=32%  Similarity=0.549  Sum_probs=54.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLH   85 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~   85 (507)
                      |++||+|||||++||+||+.|+++|++|+||||++++||++.+....+..+|.|+.++.
T Consensus         1 Mt~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~~~~~~~~~d~g~~~~~   59 (336)
T 3kkj_A            1 MTVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSDAGALDMGAQYFT   59 (336)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEEETTEEEECSCCCBC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccccCCceeecCccccc
Confidence            46899999999999999999999999999999999999999998888999999887663

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=99.80  E-value=8.1e-19  Score=175.61  Aligned_cols=243  Identities=13%  Similarity=0.114  Sum_probs=143.0

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEecc-C--------------------CCeeeecCCce
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY-S--------------------FGFPVDLGASW   83 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~--------------------~g~~~d~G~~~   83 (507)
                      +.+.+||+|||||++||+||+.|+++|++|+|+|+++++||+++|.. .                    .++.+|.|+++
T Consensus         3 ~~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~~~~~~g~~~~~~~~~~~~~~~~g~~~~~d~gP~~   82 (433)
T 1d5t_A            3 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKF   82 (433)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEECSHHHHHHHTTCTTCCCGGGCCGGGCCEESSCCB
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccccccHHHHHhhccCCCCChhHhcccCceEEccCcce
Confidence            34578999999999999999999999999999999999999999876 1                    34678888887


Q ss_pred             eeCCCCCCchHHHHHhcCCCee--eecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHH
Q 010542           84 LHGVCQENPLAPVISRLGLPLY--RTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFE  161 (507)
Q Consensus        84 ~~~~~~~~~~~~l~~~lg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (507)
                      +.   ....+.++++++|+...  .......+.+.++.... ++....         ..+.   ..+.. ..  ....+.
T Consensus        83 l~---~~~~l~~ll~~lgl~~~l~~~~~~~~~~~~~g~~~~-~p~~~~---------~~~~---~~l~~-~~--~~~~~~  143 (433)
T 1d5t_A           83 LM---ANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYK-VPSTET---------EALA---SNLMG-MF--EKRRFR  143 (433)
T ss_dssp             EE---TTSHHHHHHHHHTGGGGCCEEECCEEEEEETTEEEE-CCCSHH---------HHHH---CSSSC-HH--HHHHHH
T ss_pred             ee---ccchHHHHHHHcCCccceEEEEeCceEEeeCCEEEE-CCCCHH---------HHhh---CcccC-hh--hHHHHH
Confidence            75   33467899999997521  11111111121110000 000000         0000   00000 00  112234


Q ss_pred             HHHHHHHHHhhc--------CCCCCcHHHHHHHHhccChhHHhhhhHHHHHHHHHHhhhccccCCccccccc-------c
Q 010542          162 SILKETDKVREE--------HDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLK-------S  226 (507)
Q Consensus       162 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-------~  226 (507)
                      +++..+......        .....++.++++.+          ..++.+.+.+...+..+.+.++...+..       .
T Consensus       144 ~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~----------~~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~  213 (433)
T 1d5t_A          144 KFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKF----------DLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKL  213 (433)
T ss_dssp             HHHHHHHHCCTTCGGGGTTCCTTTSBHHHHHHHT----------TCCHHHHHHHHHHTSCCSSSGGGGSBSHHHHHHHHH
T ss_pred             HHHHHHHhhcccCchhccccccccCCHHHHHHHc----------CCCHHHHHHHHHHHHhccCCCccCCCHHHHHHHHHH
Confidence            444444332211        23466788877643          2233333322222222222222222211       0


Q ss_pred             cCc--cccccCCccccccchHHHHHHHhc-----cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          227 WDK--EELLPGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       227 ~~~--~~~~~~~~~~~~~G~~~l~~~l~~-----g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      +..  .....+...++.+|++.++++|.+     |++|+++++|++|..+++++.+...+|+++.||+||+|+++..
T Consensus       214 ~~~s~~~~g~~~~~~p~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~~g~~~~ad~VV~a~~~~~  290 (433)
T 1d5t_A          214 YSESLARYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVP  290 (433)
T ss_dssp             HHHSCCSSSCCSEEEETTCTTHHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEETTEEEECSEEEECGGGCG
T ss_pred             HHHHHHhcCCCcEEEeCcCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEECCeEEECCEEEECCCCCc
Confidence            000  001122355888999999988864     8899999999999998888774445788999999999998864

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=99.79  E-value=7.1e-19  Score=174.96  Aligned_cols=245  Identities=13%  Similarity=0.102  Sum_probs=145.9

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccC--------------------CCeeeecCCcee
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS--------------------FGFPVDLGASWL   84 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~--------------------~g~~~d~G~~~~   84 (507)
                      +.+.+||+|||||++|+++|+.|+++|++|+|+|+++++||++.+...                    .++.+|++++.+
T Consensus        17 ~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s~~~~~l~~~~~~g~~~~~~~g~~R~y~iDL~P~~l   96 (475)
T 3p1w_A           17 QGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYGENRHWNVDLIPKFI   96 (475)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCTTSCCCGGGCCGGGCCEESSCCBE
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCccccchhhhhhhcccCCCcccccccccceEEeecCeEe
Confidence            356799999999999999999999999999999999999999988542                    146889998887


Q ss_pred             eCCCCCCchHHHHHhcCCCee--eecCCCcccccccc------hhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHH
Q 010542           85 HGVCQENPLAPVISRLGLPLY--RTSGDNSVLYDHDL------ESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKV  156 (507)
Q Consensus        85 ~~~~~~~~~~~l~~~lg~~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (507)
                      .   ....+.+++.+.|+...  .......+.+..+.      .....+      ++.. ....+..  ..+...    .
T Consensus        97 ~---~~g~L~~lL~~~gv~~ylef~~~~~~y~~~~~~~~~~~~~g~~~~------VPss-~~e~~~~--~lLs~~----e  160 (475)
T 3p1w_A           97 L---VGGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTSEKFIHK------VPAT-DMEALVS--PLLSLM----E  160 (475)
T ss_dssp             E---TTSHHHHHHHHTTCGGGSCEEECSEEEEEEEECCCSSSCCEEEEE------CCCS-HHHHHTC--TTSCHH----H
T ss_pred             e---cCcHHHHHHHHCCchheeEEEecCcceEEecCccccccCCCceEe------CCCC-HHHHhhc--cCCCHH----H
Confidence            5   45578999999888621  11111111111000      000000      0000 0011111  112211    1


Q ss_pred             HHHHHHHHHHHHHHhh--------cCCCCCcHHHHHHHHhccChhHHhhhhHHHHHHHHHHhhhccccCCcccccccccC
Q 010542          157 GEAFESILKETDKVRE--------EHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWD  228 (507)
Q Consensus       157 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  228 (507)
                      +..+.+++..+.....        ....+.++.++++.          .++++.+.+.+..+++.....+....++....
T Consensus       161 K~~l~kFL~~l~~~~~~~~~~~~~~~l~~~s~~e~l~~----------~gls~~l~~fl~~alaL~~~~~~~~~~a~~~l  230 (475)
T 3p1w_A          161 KNRCKNFYQYVSEWDANKRNTWDNLDPYKLTMLEIYKH----------FNLCQLTIDFLGHAVALYLNDDYLKQPAYLTL  230 (475)
T ss_dssp             HHHHHHHHHHHHHCCTTCGGGSTTCCTTTSBHHHHHHH----------TTCCHHHHHHHHHHTSCCSSSGGGGSBHHHHH
T ss_pred             HHHHHHHHHHHHhhhhccchhhhcccccCCCHHHHHHH----------cCCCHHHHHHHHHHHHhhcCCCcccCCHHHHH
Confidence            1224445544443311        12346788887764          34555655544333322222222122222111


Q ss_pred             c---cc------cccCCccccccchHHHHHHHhc-----cCCcccCceeEEEEe-eCCcE-EEEEcCCcEEEcCEEEEec
Q 010542          229 K---EE------LLPGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITR-HYIGV-KVTVEGGKTFVADAVVVAV  292 (507)
Q Consensus       229 ~---~~------~~~~~~~~~~~G~~~l~~~l~~-----g~~i~~~~~V~~I~~-~~~~v-~v~~~~g~~~~ad~VI~a~  292 (507)
                      .   .+      +......++.+|++.++++|.+     |++|+++++|++|.. +++++ .|++.+|+++.||+||+|+
T Consensus       231 ~ri~~y~~Sl~~yg~s~~~yp~gG~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~  310 (475)
T 3p1w_A          231 ERIKLYMQSISAFGKSPFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDP  310 (475)
T ss_dssp             HHHHHHHHHHHHHSSCSEEEETTCTTHHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECG
T ss_pred             HHHHHHHHHHhhcCCCceEEECCCHHHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECC
Confidence            0   00      1123456899999999998854     889999999999998 66665 4888899899999999999


Q ss_pred             Cch
Q 010542          293 PLG  295 (507)
Q Consensus       293 p~~  295 (507)
                      ...
T Consensus       311 ~~~  313 (475)
T 3p1w_A          311 SYV  313 (475)
T ss_dssp             GGC
T ss_pred             Ccc
Confidence            754

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=99.78  E-value=4.2e-18  Score=164.89  Aligned_cols=79  Identities=30%  Similarity=0.435  Sum_probs=69.7

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC-CCCCceeEecc----------CCCeeeecCCceeeCCCCCCchH
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR-DRVGGRVHTDY----------SFGFPVDLGASWLHGVCQENPLA   94 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~-~~~GG~~~s~~----------~~g~~~d~G~~~~~~~~~~~~~~   94 (507)
                      ...+||+|||||++||+||+.|+++|++|+|||++ +++||++.+..          ..++.+|.|+++++.  .+..+.
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~~~~~~~~~~~~~~~~~~e~G~~~~~~--~~~~~~  119 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYAEAGAMRLPS--FHPLTL  119 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEECCCTTSCCSSSSTTCCEESSCCCEET--TCHHHH
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeeecccccccccccCCCcEEecCceeecc--hHHHHH
Confidence            45789999999999999999999999999999999 99999999876          357899999999863  455788


Q ss_pred             HHHHhcCCCeee
Q 010542           95 PVISRLGLPLYR  106 (507)
Q Consensus        95 ~l~~~lg~~~~~  106 (507)
                      ++++++|+....
T Consensus       120 ~~~~~lGl~~~~  131 (376)
T 2e1m_A          120 ALIDKLGLKRRL  131 (376)
T ss_dssp             HHHHHTTCCEEE
T ss_pred             HHHHHcCCCcce
Confidence            999999998654

>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=99.64  E-value=3.6e-16  Score=135.58  Aligned_cols=116  Identities=19%  Similarity=0.196  Sum_probs=101.5

Q ss_pred             CCc-eEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhC-CCCCCCc-EE--EeccCCCCCCCCcccccCCCCCchHHHH
Q 010542          362 TGH-CVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL-PDASSPI-QY--LVSHWGTDANSLGSYSYDTVGKSHDLYE  436 (507)
Q Consensus       362 ~~~-~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~-p~~~~~~-~~--~~~~w~~~~~~~g~~~~~~~~~~~~~~~  436 (507)
                      ++. .+|++|+.+..+..+..++++++++.++++|.++| |+. .+. .+  ..++|..++++.|+|.+..||+.....+
T Consensus        33 ~g~~~~L~~~~~g~~A~~~~~l~~~e~~~~~l~~L~~~~g~~~-~~~~~~~~~~~~W~~dp~~~Ga~s~~~pg~~~~~~~  111 (181)
T 2e1m_C           33 TQGGVVLAAYSWSDDAARWDSFDDAERYGYALENLQSVHGRRI-EVFYTGAGQTQSWLRDPYACGEAAVYTPHQMTAFHL  111 (181)
T ss_dssp             CSCEEEEEEEEEHHHHHHHTTSCTTTTHHHHHHHHHHHHCGGG-GGTEEEEEEEEESSSCTTTSSSEECCCTTHHHHHHH
T ss_pred             CCCCEEEEEEcCChHHHHHHcCCHHHHHHHHHHHHHHHhCCCc-HhhccCcceecccCCCCCCCCcccCcCCCchHHHHH
Confidence            444 57888888888888989999999999999999999 555 554 57  8899999999999998878888777788


Q ss_pred             HhcCCCCceEEeeccccCcCCchhhHHHHHHHHHHHHHHHHHH
Q 010542          437 RLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL  479 (507)
Q Consensus       437 ~~~~~~~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~l~  479 (507)
                      .+.+|.++|||||++++. +.|||+||++||.+||++|++.+.
T Consensus       112 ~l~~p~grl~FAGe~ts~-~~g~~eGAl~SG~raA~~i~~~l~  153 (181)
T 2e1m_C          112 DVVRPEGPVYFAGEHVSL-KHAWIEGAVETAVRAAIAVNEAPV  153 (181)
T ss_dssp             HHHSCBTTEEECSGGGTT-STTSHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHhCCCCcEEEEEHHHcC-CccCHHHHHHHHHHHHHHHHHHhc
Confidence            899999999999999996 779999999999999999987653

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.51  E-value=8.3e-13  Score=129.34  Aligned_cols=41  Identities=37%  Similarity=0.574  Sum_probs=37.5

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      +++||+|||||++||+||++|+++|++|+|+|+++.+|+.+
T Consensus         3 ~~~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~~~~~~~   43 (369)
T 3dme_A            3 TDIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIGTGT   43 (369)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSCST
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCcc
Confidence            46899999999999999999999999999999987777654

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.47  E-value=6.3e-13  Score=130.88  Aligned_cols=51  Identities=16%  Similarity=0.128  Sum_probs=42.7

Q ss_pred             HHHHHHHh-ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          245 LPVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       245 ~~l~~~l~-~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      ..+.+.+. .|++|+++++|++|..+++++.|++.+| ++.||+||+|++...
T Consensus       158 ~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          158 QGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAWC  209 (381)
T ss_dssp             HHHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGGH
T ss_pred             HHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChhH
Confidence            34444443 3999999999999999988888998888 899999999999864

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.47  E-value=5e-12  Score=133.71  Aligned_cols=52  Identities=17%  Similarity=0.178  Sum_probs=44.1

Q ss_pred             HHHHHHHhc-cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          245 LPVINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       245 ~~l~~~l~~-g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      ..+.+.+.+ |++|+++++|++|..++++|.|++.+|.++.||.||+|++...
T Consensus       421 ~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~s  473 (676)
T 3ps9_A          421 RNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQI  473 (676)
T ss_dssp             HHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGGG
T ss_pred             HHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcch
Confidence            444444443 8999999999999999999999998888999999999999874

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.45  E-value=3.8e-12  Score=125.82  Aligned_cols=39  Identities=31%  Similarity=0.555  Sum_probs=36.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG   65 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG   65 (507)
                      ++|||+|||||++||+||+.|+++|++|+|||+++.+|.
T Consensus         3 e~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~   41 (397)
T 3oz2_A            3 ETYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGS   41 (397)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            459999999999999999999999999999999887765

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.42  E-value=7.5e-12  Score=132.54  Aligned_cols=52  Identities=12%  Similarity=0.157  Sum_probs=42.9

Q ss_pred             HHHHHHHhc-cCCcccCceeEEEEeeCCcEEEEEcCCc-EEEcCEEEEecCchh
Q 010542          245 LPVINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGK-TFVADAVVVAVPLGV  296 (507)
Q Consensus       245 ~~l~~~l~~-g~~i~~~~~V~~I~~~~~~v~v~~~~g~-~~~ad~VI~a~p~~~  296 (507)
                      ..+.+.+.+ |++|+++++|++|..++++|.|++.+|. ++.||.||+|++...
T Consensus       416 ~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~s  469 (689)
T 3pvc_A          416 HALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHRL  469 (689)
T ss_dssp             HHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGGT
T ss_pred             HHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcch
Confidence            344444443 8999999999999999999999998887 899999999999874

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=99.42  E-value=1.9e-12  Score=132.62  Aligned_cols=57  Identities=14%  Similarity=0.097  Sum_probs=48.6

Q ss_pred             CCccccccchHHHHHHHhc-----cCCcccCceeEEEEeeC--CcEE-EEEcCCcEEEcCEEEEe
Q 010542          235 GGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHY--IGVK-VTVEGGKTFVADAVVVA  291 (507)
Q Consensus       235 ~~~~~~~~G~~~l~~~l~~-----g~~i~~~~~V~~I~~~~--~~v~-v~~~~g~~~~ad~VI~a  291 (507)
                      ++..++.+|++.|.++|.+     |++|+++++|++|..++  +++. |.+.+|+++.||+||++
T Consensus       368 sg~~yp~GG~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~  432 (650)
T 1vg0_A          368 TPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIE  432 (650)
T ss_dssp             SSEEEETTCTTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEE
T ss_pred             CceEEeCCchhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEC
Confidence            4677899999999998854     88999999999999887  6665 55677999999999983

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.39  E-value=2e-11  Score=120.15  Aligned_cols=50  Identities=16%  Similarity=0.032  Sum_probs=41.4

Q ss_pred             HHHHHHh-ccCCcccCceeEEEEeeCCcEE-EEEcCCcEEEcCEEEEecCchh
Q 010542          246 PVINTLA-KGLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       246 ~l~~~l~-~g~~i~~~~~V~~I~~~~~~v~-v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      .+.+.+. .|++|+++++|++|..+++++. |++.+| +++||.||+|++...
T Consensus       154 ~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          154 AFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWA  205 (382)
T ss_dssp             HHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhH
Confidence            3444443 3899999999999999888887 888877 899999999998764

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.37  E-value=1.6e-11  Score=120.94  Aligned_cols=51  Identities=20%  Similarity=0.148  Sum_probs=41.6

Q ss_pred             HHHHHHHh-ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          245 LPVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       245 ~~l~~~l~-~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      +.+.+.+. .|++++++++|++|..+++++.|++.+| ++.||.||+|++...
T Consensus       168 ~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~s  219 (382)
T 1ryi_A          168 KAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWS  219 (382)
T ss_dssp             HHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGT
T ss_pred             HHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChhH
Confidence            33444443 3899999999999999888888888777 899999999998754

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.36  E-value=3.1e-11  Score=119.85  Aligned_cols=49  Identities=20%  Similarity=0.286  Sum_probs=42.1

Q ss_pred             HHHHHhccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          247 VINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       247 l~~~l~~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      |.+.+.+ ++|+++++|++|+.+++++.|++.+|+++.+|.||.|.+...
T Consensus       133 L~~~~~~-~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S  181 (407)
T 3rp8_A          133 MLDYWGR-DSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHS  181 (407)
T ss_dssp             HHHHHCG-GGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCCTTC
T ss_pred             HHHhCCc-CEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCCcCh
Confidence            3344444 789999999999999999999999999999999999998764

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.36  E-value=3e-11  Score=119.22  Aligned_cols=51  Identities=18%  Similarity=0.210  Sum_probs=41.5

Q ss_pred             HHHHHHHh-ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          245 LPVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       245 ~~l~~~l~-~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      ..+.+.+. .|++++++++|++|..+++++.|++.+| +++||.||+|++...
T Consensus       154 ~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~  205 (389)
T 2gf3_A          154 RAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWN  205 (389)
T ss_dssp             HHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecCccH
Confidence            34444443 3899999999999999888888888776 899999999998754

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.35  E-value=1.1e-11  Score=127.96  Aligned_cols=38  Identities=29%  Similarity=0.385  Sum_probs=34.6

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG   64 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~G   64 (507)
                      +.+||+|||||++||++|+.|+++|++|+|+|+....+
T Consensus        22 ~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~   59 (591)
T 3i3l_A           22 TRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPR   59 (591)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCC
Confidence            46899999999999999999999999999999976543

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.35  E-value=1.7e-10  Score=114.04  Aligned_cols=51  Identities=29%  Similarity=0.369  Sum_probs=41.8

Q ss_pred             hHHHHHHHh-ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542          244 YLPVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       244 ~~~l~~~l~-~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      .+.+.+.+. .|++|+++++|++|..+++++.|++.+| +++||.||+|++..
T Consensus       156 ~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g-~i~a~~VV~A~G~~  207 (397)
T 2oln_A          156 LAALFTLAQAAGATLRAGETVTELVPDADGVSVTTDRG-TYRAGKVVLACGPY  207 (397)
T ss_dssp             HHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEESSC-EEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEECCC-EEEcCEEEEcCCcC
Confidence            344555444 3899999999999999888888888776 89999999999875

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.32  E-value=7.6e-11  Score=121.49  Aligned_cols=43  Identities=30%  Similarity=0.261  Sum_probs=38.3

Q ss_pred             cCCcccCceeEEEEeeCCcEEEEE--cCC-cEEEcCEEEEecCchh
Q 010542          254 GLDIRLGHRVTKITRHYIGVKVTV--EGG-KTFVADAVVVAVPLGV  296 (507)
Q Consensus       254 g~~i~~~~~V~~I~~~~~~v~v~~--~~g-~~~~ad~VI~a~p~~~  296 (507)
                      |++|+++++|++|+.++++++|++  .+| ++++||.||.|.+...
T Consensus       162 gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~S  207 (570)
T 3fmw_A          162 GAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGRS  207 (570)
T ss_dssp             TEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCSSC
T ss_pred             CCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCCCc
Confidence            889999999999999999888877  678 6899999999998754

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.32  E-value=1.3e-11  Score=123.89  Aligned_cols=53  Identities=17%  Similarity=0.210  Sum_probs=44.4

Q ss_pred             HHHHHHHh-ccCCcccCc---eeEEEEeeCCcEE-EEEcCCcEEEcCEEEEecCchhh
Q 010542          245 LPVINTLA-KGLDIRLGH---RVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGVL  297 (507)
Q Consensus       245 ~~l~~~l~-~g~~i~~~~---~V~~I~~~~~~v~-v~~~~g~~~~ad~VI~a~p~~~~  297 (507)
                      ..+.+.+. .|++|++++   +|++|..+++++. |++.+|+++.||.||+|++....
T Consensus       165 ~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~  222 (438)
T 3dje_A          165 VAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAG  222 (438)
T ss_dssp             HHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGGG
T ss_pred             HHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCChh
Confidence            44444444 399999999   9999999988888 99999988999999999998653

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.31  E-value=8.1e-12  Score=123.62  Aligned_cols=43  Identities=26%  Similarity=0.454  Sum_probs=37.3

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      +.+.+||+|||||++||+||+.|+++|++|+|+|+++.+|+.+
T Consensus        24 ~~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~   66 (417)
T 3v76_A           24 VAEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKI   66 (417)
T ss_dssp             ----CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcee
Confidence            4567899999999999999999999999999999999998765

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.30  E-value=9.6e-11  Score=120.56  Aligned_cols=50  Identities=26%  Similarity=0.278  Sum_probs=41.1

Q ss_pred             HHHHHhc-cCCcccCceeEEEEeeCC----cEEEEEcCC---cEEEcCEEEEecCchh
Q 010542          247 VINTLAK-GLDIRLGHRVTKITRHYI----GVKVTVEGG---KTFVADAVVVAVPLGV  296 (507)
Q Consensus       247 l~~~l~~-g~~i~~~~~V~~I~~~~~----~v~v~~~~g---~~~~ad~VI~a~p~~~  296 (507)
                      |.+.+.+ |++|+++++|++|+.+++    ++++++.++   .+++||.||.|.+...
T Consensus       126 L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          126 LLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRS  183 (535)
T ss_dssp             HHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCCCeEEEEeCEEEECCCCcc
Confidence            3344433 899999999999999988    888888776   6899999999998764

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.26  E-value=1.6e-10  Score=115.23  Aligned_cols=43  Identities=21%  Similarity=0.206  Sum_probs=36.9

Q ss_pred             cCCcccCceeEEEEeeCCcE--EEEEcCCc--EEEcCEEEEecCchh
Q 010542          254 GLDIRLGHRVTKITRHYIGV--KVTVEGGK--TFVADAVVVAVPLGV  296 (507)
Q Consensus       254 g~~i~~~~~V~~I~~~~~~v--~v~~~~g~--~~~ad~VI~a~p~~~  296 (507)
                      |++|+++++|++|..+++++  .+++.+|+  +++||.||.|++...
T Consensus       120 gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s  166 (421)
T 3nix_A          120 GVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGR  166 (421)
T ss_dssp             TCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGC
T ss_pred             CCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCch
Confidence            99999999999999987765  46667887  699999999998754

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=99.24  E-value=2.6e-10  Score=113.24  Aligned_cols=51  Identities=20%  Similarity=0.156  Sum_probs=40.9

Q ss_pred             HHHHHhcc--CCcccCceeEEEEeeC-CcEEEEEcCCcEEEcCEEEEecCchhh
Q 010542          247 VINTLAKG--LDIRLGHRVTKITRHY-IGVKVTVEGGKTFVADAVVVAVPLGVL  297 (507)
Q Consensus       247 l~~~l~~g--~~i~~~~~V~~I~~~~-~~v~v~~~~g~~~~ad~VI~a~p~~~~  297 (507)
                      |.+.|.+.  ..|+++++|++++..+ ++++|+++||++++||.||-|-+.+..
T Consensus       114 L~~~L~~~~~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~  167 (412)
T 4hb9_A          114 LKEILNKGLANTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLVGADGSNSK  167 (412)
T ss_dssp             HHHHHHTTCTTTEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred             HHHHHHhhccceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEEEECCCCCcc
Confidence            44555553  4799999999998765 468899999999999999999987643

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.23  E-value=8.9e-10  Score=111.92  Aligned_cols=43  Identities=37%  Similarity=0.387  Sum_probs=38.6

Q ss_pred             cCCcccCceeEEEEeeCCcEEEEEcCCc---EEEcCEEEEecCchh
Q 010542          254 GLDIRLGHRVTKITRHYIGVKVTVEGGK---TFVADAVVVAVPLGV  296 (507)
Q Consensus       254 g~~i~~~~~V~~I~~~~~~v~v~~~~g~---~~~ad~VI~a~p~~~  296 (507)
                      |++|+++++|++|+.++++++|++.++.   ++++|.||.|.+...
T Consensus       120 gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S  165 (500)
T 2qa1_A          120 GADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRS  165 (500)
T ss_dssp             TCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTC
T ss_pred             CCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcch
Confidence            8899999999999999999988887775   799999999998764

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.22  E-value=3e-10  Score=115.42  Aligned_cols=43  Identities=28%  Similarity=0.235  Sum_probs=38.8

Q ss_pred             cCCcccCceeEEEEeeCCcEEEEEcCCc---EEEcCEEEEecCchh
Q 010542          254 GLDIRLGHRVTKITRHYIGVKVTVEGGK---TFVADAVVVAVPLGV  296 (507)
Q Consensus       254 g~~i~~~~~V~~I~~~~~~v~v~~~~g~---~~~ad~VI~a~p~~~  296 (507)
                      |++|+++++|++|+.++++++|++.++.   +++||.||.|.+.+.
T Consensus       121 gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S  166 (499)
T 2qa2_A          121 GAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRS  166 (499)
T ss_dssp             TCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTC
T ss_pred             CCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCccc
Confidence            8899999999999999999999888875   799999999998764

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.18  E-value=2.6e-10  Score=116.57  Aligned_cols=36  Identities=31%  Similarity=0.371  Sum_probs=33.5

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      +++||+|||||++||++|+.|+++|++|+|+|+.+.
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~   41 (512)
T 3e1t_A            6 EVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAF   41 (512)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCS
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCC
Confidence            458999999999999999999999999999999764

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.18  E-value=9.8e-11  Score=120.07  Aligned_cols=56  Identities=29%  Similarity=0.380  Sum_probs=46.5

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGA   81 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~   81 (507)
                      .+.+||+|||||++||++|+.|++.|++|+|+|+++.+||.+......|+..|...
T Consensus        19 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s   74 (549)
T 4ap3_A           19 TTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVES   74 (549)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCT
T ss_pred             CCCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCc
Confidence            35689999999999999999999999999999999999997765555566555433

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.17  E-value=3.7e-10  Score=115.23  Aligned_cols=42  Identities=36%  Similarity=0.476  Sum_probs=39.1

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ...+||+|||||++||+||+.|+++|.+|+|+||.+.+||.+
T Consensus        39 ~~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~GG~s   80 (510)
T 4at0_A           39 DYEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGAT   80 (510)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTG
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcc
Confidence            356899999999999999999999999999999999999864

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.17  E-value=1.6e-10  Score=118.96  Aligned_cols=41  Identities=24%  Similarity=0.391  Sum_probs=37.6

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+++..||.+
T Consensus        17 ~~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d~~~GtS   57 (561)
T 3da1_A           17 KQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDFASGTS   57 (561)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSSTTCSGG
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCcc
Confidence            46999999999999999999999999999999998777654

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.16  E-value=2.1e-10  Score=112.43  Aligned_cols=51  Identities=22%  Similarity=0.204  Sum_probs=42.2

Q ss_pred             HHHHHHHh-ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          245 LPVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       245 ~~l~~~l~-~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      ..+.+.+. .|++++++++|++|..+++++.|++.+| ++.||.||+|++...
T Consensus       153 ~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s  204 (372)
T 2uzz_A          153 KTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADG-EYQAKKAIVCAGTWV  204 (372)
T ss_dssp             HHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-EEEEEEEEECCGGGG
T ss_pred             HHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCC-eEEcCEEEEcCCccH
Confidence            44444443 3899999999999999888888988888 699999999999765

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.16  E-value=2.9e-10  Score=112.41  Aligned_cols=45  Identities=11%  Similarity=0.011  Sum_probs=40.9

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhh
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL  297 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~  297 (507)
                      .|++|+++++|++|+.+++++.|++.+|+++.+|.||.|.+....
T Consensus       110 ~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  154 (397)
T 2vou_A          110 GPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASV  154 (397)
T ss_dssp             CSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred             CCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcchh
Confidence            488999999999999999999999999989999999999987653

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.16  E-value=2.3e-10  Score=118.36  Aligned_cols=42  Identities=33%  Similarity=0.525  Sum_probs=38.8

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ...+||+|||||++||+||+.|+++|.+|+||||.+.+||.+
T Consensus       119 ~~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s  160 (566)
T 1qo8_A          119 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNS  160 (566)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTG
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcc
Confidence            467899999999999999999999999999999999988754

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.16  E-value=5.2e-10  Score=112.55  Aligned_cols=37  Identities=32%  Similarity=0.524  Sum_probs=34.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      +.+||+|||||++||++|+.|+++|++|+|+|++...
T Consensus         5 ~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~   41 (453)
T 3atr_A            5 LKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWN   41 (453)
T ss_dssp             EECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGG
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            3589999999999999999999999999999998754

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.16  E-value=3e-10  Score=117.66  Aligned_cols=42  Identities=36%  Similarity=0.585  Sum_probs=38.9

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ...+||+|||||++||+||+.|+++|.+|+||||.+.+||.+
T Consensus       124 ~~~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s  165 (571)
T 1y0p_A          124 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNA  165 (571)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTG
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCch
Confidence            457899999999999999999999999999999999998864

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.14  E-value=1.5e-10  Score=114.18  Aligned_cols=41  Identities=27%  Similarity=0.503  Sum_probs=37.5

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      +++||+|||||++||+||+.|+++|.+|+|+|+++.+|+..
T Consensus         3 ~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~   43 (401)
T 2gqf_A            3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKI   43 (401)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhc
Confidence            35899999999999999999999999999999999887654

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.13  E-value=2.4e-10  Score=117.52  Aligned_cols=50  Identities=28%  Similarity=0.365  Sum_probs=42.4

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCe
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGF   75 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~   75 (507)
                      ...+||+|||||++||++|+.|++.|++|+|+|+++.+||.+.....+|.
T Consensus        14 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~   63 (542)
T 1w4x_A           14 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGA   63 (542)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTC
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCce
Confidence            34689999999999999999999999999999999999997644333333

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=99.13  E-value=6.5e-10  Score=109.91  Aligned_cols=44  Identities=14%  Similarity=-0.006  Sum_probs=39.4

Q ss_pred             cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhh
Q 010542          254 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL  297 (507)
Q Consensus       254 g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~  297 (507)
                      +++|+++++|++|+.++++++|++.+|++++||.||.|.+....
T Consensus       140 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  183 (398)
T 2xdo_A          140 NDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSK  183 (398)
T ss_dssp             TTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCTTCS
T ss_pred             CCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCcchh
Confidence            46899999999999988889999999988999999999987653

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.12  E-value=1.8e-10  Score=115.61  Aligned_cols=42  Identities=33%  Similarity=0.533  Sum_probs=38.0

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      .+.+||+|||||++||+||+.|+++|.+|+|+|+.+.+|+.+
T Consensus        24 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~   65 (447)
T 2i0z_A           24 AMHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKL   65 (447)
T ss_dssp             -CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred             cCCCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCcee
Confidence            456899999999999999999999999999999999888754

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.12  E-value=2.5e-10  Score=116.87  Aligned_cols=53  Identities=28%  Similarity=0.392  Sum_probs=45.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHH-hCCCeEEEEecCCCCCceeEeccCCCeeeec
Q 010542           27 RSPSVIVIGAGMAGVAAARALH-DASFKVVLLESRDRVGGRVHTDYSFGFPVDL   79 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~-~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~   79 (507)
                      +.+||+|||||++||+||+.|+ +.|++|+|+|+++.+||.+......|+..|.
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~   60 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDT   60 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecC
Confidence            4589999999999999999999 8899999999999999976555555655544

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.10  E-value=3.8e-10  Score=108.81  Aligned_cols=41  Identities=20%  Similarity=0.378  Sum_probs=38.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      +++||+|||||++||+||+.|++.|++|+|+|+++.+||.+
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~   44 (335)
T 2zbw_A            4 DHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQL   44 (335)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHH
T ss_pred             CcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCee
Confidence            46899999999999999999999999999999999998865

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.09  E-value=1.4e-08  Score=103.44  Aligned_cols=39  Identities=28%  Similarity=0.497  Sum_probs=34.7

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG   65 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG   65 (507)
                      +++||+|||||++|+++|+.|+++|++|+|+|+++..+|
T Consensus         2 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~~~~g   40 (501)
T 2qcu_A            2 ETKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACA   40 (501)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCEEEEECCCCCCC
Confidence            368999999999999999999999999999999875444

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.09  E-value=6.4e-10  Score=110.24  Aligned_cols=51  Identities=22%  Similarity=0.126  Sum_probs=40.4

Q ss_pred             HHHHHHHh-ccCCcccCceeEEEEeeCCc-EEEEEcCCcEEEcCEEEEecCchh
Q 010542          245 LPVINTLA-KGLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       245 ~~l~~~l~-~g~~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      ..+.+.+. .|++++++++|++|..++++ +.|++.+| ++.+|.||+|++...
T Consensus       178 ~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          178 WAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHS  230 (405)
T ss_dssp             HHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhH
Confidence            34444444 38999999999999988776 45888888 899999999998754

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.07  E-value=2.4e-10  Score=117.05  Aligned_cols=51  Identities=29%  Similarity=0.414  Sum_probs=42.9

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFP   76 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~   76 (507)
                      .+.+||+|||||++||++|+.|++.|++|+|+|+++.+||.+.....+|..
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~   57 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCR   57 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCB
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCcee
Confidence            346899999999999999999999999999999999999976444434433

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.07  E-value=4.4e-10  Score=114.26  Aligned_cols=42  Identities=29%  Similarity=0.405  Sum_probs=38.3

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ...+||+|||||++||+||+.|++.|++|+|+|+.+.++++.
T Consensus       105 ~~~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~  146 (549)
T 3nlc_A          105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERT  146 (549)
T ss_dssp             TCCCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccc
Confidence            345899999999999999999999999999999998887765

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.06  E-value=6.5e-10  Score=108.34  Aligned_cols=43  Identities=23%  Similarity=0.373  Sum_probs=38.9

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      .+++||+|||||++||+||+.|++.|++|+|+|+++.+||.+.
T Consensus        12 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~   54 (360)
T 3ab1_A           12 HDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLA   54 (360)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccc
Confidence            4568999999999999999999999999999999999988653

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.05  E-value=6.7e-10  Score=107.91  Aligned_cols=41  Identities=32%  Similarity=0.545  Sum_probs=38.3

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      ++||+|||||++||++|+.|++.|++|+|+|+++.+||.+.
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~   43 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQ   43 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence            57999999999999999999999999999999999998653

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.04  E-value=1.4e-08  Score=105.14  Aligned_cols=41  Identities=34%  Similarity=0.639  Sum_probs=37.5

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhC------CCeEEEEecCCCCCce
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDA------SFKVVLLESRDRVGGR   66 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~------G~~V~vlE~~~~~GG~   66 (507)
                      .+.+||+|||||++||+||+.|++.      |++|+|+||...+|+.
T Consensus        33 ~~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~   79 (584)
T 2gmh_A           33 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAH   79 (584)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTT
T ss_pred             ccCCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCc
Confidence            3468999999999999999999998      9999999999888764

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.03  E-value=5.4e-10  Score=107.50  Aligned_cols=41  Identities=24%  Similarity=0.346  Sum_probs=38.4

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      +++||+|||||++||+||+.|++.|++|+|+|+++.+||..
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~   46 (332)
T 3lzw_A            6 KVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQL   46 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCcee
Confidence            35899999999999999999999999999999999999876

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.01  E-value=7.7e-10  Score=109.44  Aligned_cols=51  Identities=16%  Similarity=0.267  Sum_probs=43.2

Q ss_pred             HHHHHHhc--cCCcccCceeEEEEeeCCcE--EEEEcCCcEEEcCEEEEecCchh
Q 010542          246 PVINTLAK--GLDIRLGHRVTKITRHYIGV--KVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       246 ~l~~~l~~--g~~i~~~~~V~~I~~~~~~v--~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      .|.+.+.+  |++|+++++|++|+.+++++  .|++.+|+++++|.||.|.+...
T Consensus       112 ~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG~~s  166 (399)
T 2x3n_A          112 LVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIAS  166 (399)
T ss_dssp             HHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCCTTC
T ss_pred             HHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCCCCh
Confidence            34455554  78999999999999998888  89999998999999999998754

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.01  E-value=1.8e-09  Score=103.33  Aligned_cols=41  Identities=22%  Similarity=0.247  Sum_probs=35.2

Q ss_pred             cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542          254 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       254 g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      |+++++ ++|++|..+++.+.+++.+|.++.+|+||+|++..
T Consensus        84 ~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~  124 (323)
T 3f8d_A           84 EVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVK  124 (323)
T ss_dssp             TCCEEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCE
T ss_pred             CCEEEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCC
Confidence            788888 89999999988899999998899999999999764

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.00  E-value=3e-09  Score=106.75  Aligned_cols=42  Identities=33%  Similarity=0.502  Sum_probs=38.7

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCC--eEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASF--KVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~~~~GG~~   67 (507)
                      .+.+||+|||||++||+||..|++.|.  +|+|||+++.+||.+
T Consensus         4 ~~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~   47 (447)
T 2gv8_A            4 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVW   47 (447)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTC
T ss_pred             CCCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCee
Confidence            346899999999999999999999999  999999999999855

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.99  E-value=7.9e-10  Score=119.62  Aligned_cols=51  Identities=25%  Similarity=0.176  Sum_probs=41.1

Q ss_pred             HHHHHHHh-ccCCcccCceeEEEEeeCCcE-EEEEcCCcEEEcCEEEEecCchh
Q 010542          245 LPVINTLA-KGLDIRLGHRVTKITRHYIGV-KVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       245 ~~l~~~l~-~g~~i~~~~~V~~I~~~~~~v-~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      ..+.+.+. .|++|+++++|++|..+++++ .|++.+| +++||.||+|++...
T Consensus       155 ~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          155 QLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWG  207 (830)
T ss_dssp             HHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccch
Confidence            34444443 389999999999999988876 4778777 899999999998765

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.99  E-value=1.2e-08  Score=106.98  Aligned_cols=37  Identities=22%  Similarity=0.475  Sum_probs=34.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHh-CCCeEEEEecCCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHD-ASFKVVLLESRDRV   63 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~-~G~~V~vlE~~~~~   63 (507)
                      ..+||+|||||++||++|+.|++ .|++|+|+|+.+.+
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~   68 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGP   68 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            46899999999999999999999 99999999998654

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.98  E-value=1.5e-09  Score=101.96  Aligned_cols=41  Identities=32%  Similarity=0.551  Sum_probs=37.4

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhC-CCeEEEEecCCCCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRDRVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~-G~~V~vlE~~~~~GG~~   67 (507)
                      .++||+|||||++||+||+.|++. |.+|+|+|+++.+||.+
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~   79 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGA   79 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTT
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCce
Confidence            457999999999999999999997 99999999999888743

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.98  E-value=7e-09  Score=105.14  Aligned_cols=49  Identities=22%  Similarity=0.304  Sum_probs=41.8

Q ss_pred             HHHHHh-ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542          247 VINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       247 l~~~l~-~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      +.+.+. .|++++++++|++|+.+++++.|++.+|+++.+|.||+|++..
T Consensus       238 l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~  287 (484)
T 3o0h_A          238 LNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRV  287 (484)
T ss_dssp             HHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEE
T ss_pred             HHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCC
Confidence            334444 3899999999999999888889999999899999999999864

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.96  E-value=3.1e-09  Score=109.76  Aligned_cols=42  Identities=43%  Similarity=0.624  Sum_probs=38.7

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ...+||+|||||++||+||+.|++.|++|+|+|+.+.+||.+
T Consensus       124 ~~~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~  165 (572)
T 1d4d_A          124 KETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNT  165 (572)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTG
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcch
Confidence            346899999999999999999999999999999999998864

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.96  E-value=9.9e-10  Score=110.42  Aligned_cols=39  Identities=31%  Similarity=0.384  Sum_probs=34.7

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCC-CeEEEEecCCCCCc
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRDRVGG   65 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~~~~GG   65 (507)
                      +++||+|||||++||++|++|+++| ++|+|+|++..+|+
T Consensus        22 ~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~~~~~~   61 (448)
T 3axb_A           22 PRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAPGS   61 (448)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESSSSTTC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccCCCCCC
Confidence            4689999999999999999999999 99999999555553

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.93  E-value=2.5e-09  Score=104.92  Aligned_cols=39  Identities=31%  Similarity=0.458  Sum_probs=35.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG   65 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG   65 (507)
                      +.+||+|||||++||++|+.|+++|++|+|+|+++.+++
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~   48 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRA   48 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCC
Confidence            468999999999999999999999999999999877654

>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.93  E-value=5.7e-11  Score=95.23  Aligned_cols=108  Identities=18%  Similarity=0.225  Sum_probs=66.9

Q ss_pred             cEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcceeEEEEEccCCCCCCCccceeecCCCCceeeeecccc
Q 010542          281 KTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHK  360 (507)
Q Consensus       281 ~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  360 (507)
                      ++++||+||+|+|+..+.  .+.|.|+||+...+++..++++...|+++.|+.+||++.+..|.            +...
T Consensus         4 ~~~~Ad~VIvTvP~~vL~--~I~F~P~LP~~k~~Ai~~l~~g~~~Kv~l~f~~~FW~~~~~~gd------------~s~~   69 (130)
T 2e1m_B            4 QTWTGDLAIVTIPFSSLR--FVKVTPPFSYKKRRAVIETHYDQATKVLLEFSRRWWEFTEADWK------------RELD   69 (130)
T ss_dssp             EEEEESEEEECSCHHHHT--TSEEESCCCHHHHHHHHHCCEECEEEEEEEESSCGGGCCHHHHH------------HHHH
T ss_pred             eEEEcCEEEEcCCHHHHh--cCcCCCCCCHHHHHHHHhCCCcceeEEEEEECCCCCCCCCcccc------------ccCC
Confidence            378999999999999987  57889999999999999999999999999999999997644321            1111


Q ss_pred             CCCceEEEEEe-ccchhHHHhcCCHHHHHHHHHHHHHHhCCCCC
Q 010542          361 ATGHCVLVYMP-AGQLARDIEKMSDEAAANFAFTQLKKILPDAS  403 (507)
Q Consensus       361 ~~~~~~l~~~~-~~~~~~~~~~~~~ee~~~~~~~~L~~~~p~~~  403 (507)
                      +.+..++++|+ ++..+..|..+++ +..+.+++.|.+++|+..
T Consensus        70 ~~~pg~l~~f~~wg~~A~~~~~l~~-~~r~~~~~~l~~~~p~~~  112 (130)
T 2e1m_B           70 AIAPGLYDYYQQWGEDDAEAALALP-QSVRNLPTGLLGAHPSVD  112 (130)
T ss_dssp             HHSTTHHHHHHHHCCCSCCCC-----------------------
T ss_pred             CCCCeEEEEecccCHHHHHHhcCCH-HHHHHHHHHHHHhCCCCc
Confidence            12223666677 3777777777755 788899999999999765

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.91  E-value=5.5e-09  Score=103.68  Aligned_cols=38  Identities=37%  Similarity=0.629  Sum_probs=34.6

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCe-EEEEecCCCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFK-VVLLESRDRVG   64 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~-V~vlE~~~~~G   64 (507)
                      +.+||+|||||++||++|..|++.|++ |+|+|+.+.++
T Consensus         3 ~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~   41 (410)
T 3c96_A            3 EPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIR   41 (410)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcc
Confidence            468999999999999999999999999 99999987654

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.91  E-value=2.4e-09  Score=103.20  Aligned_cols=43  Identities=33%  Similarity=0.390  Sum_probs=36.7

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC----CCCcee
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD----RVGGRV   67 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~----~~GG~~   67 (507)
                      ..+++||+|||||++||+||+.|+++|++|+|+|+.+    .+||.+
T Consensus        19 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~   65 (338)
T 3itj_A           19 SHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQL   65 (338)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGG
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCccc
Confidence            3467999999999999999999999999999999944    667654

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.88  E-value=8.2e-09  Score=97.94  Aligned_cols=40  Identities=30%  Similarity=0.394  Sum_probs=34.9

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR   66 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~   66 (507)
                      ++.|||+|||||++||+||++|+++|++|+|+|+. .+||.
T Consensus         4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~-~~gg~   43 (304)
T 4fk1_A            4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNN-TNRNR   43 (304)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECS-CCGGG
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCCe
Confidence            46799999999999999999999999999999995 55664

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.86  E-value=8.1e-09  Score=97.84  Aligned_cols=41  Identities=24%  Similarity=0.538  Sum_probs=37.5

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~~   67 (507)
                      ..+||+|||||++||+||+.|+++  |++|+|+|+...+||.+
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~  120 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGA  120 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTT
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCcc
Confidence            358999999999999999999997  99999999999888754

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.86  E-value=4.7e-08  Score=101.19  Aligned_cols=40  Identities=28%  Similarity=0.347  Sum_probs=36.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR   66 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~   66 (507)
                      ..+||+|||||++||+||+.|+++|.+|+|+||....||.
T Consensus        17 ~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g~   56 (621)
T 2h88_A           17 HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSH   56 (621)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSG
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCC
Confidence            4689999999999999999999999999999998766553

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.85  E-value=5e-08  Score=100.82  Aligned_cols=40  Identities=30%  Similarity=0.336  Sum_probs=36.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR   66 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~   66 (507)
                      ..+||+|||||++||+||+.|+++|.+|+|+||....||.
T Consensus         6 ~~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g~   45 (588)
T 2wdq_A            6 REFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSH   45 (588)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Confidence            3589999999999999999999999999999998776653

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.84  E-value=2.4e-08  Score=103.04  Aligned_cols=39  Identities=26%  Similarity=0.452  Sum_probs=35.9

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG   65 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG   65 (507)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+.+..+|
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~~~~G   69 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDFAEG   69 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            468999999999999999999999999999999876665

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.84  E-value=1e-08  Score=101.22  Aligned_cols=51  Identities=10%  Similarity=0.036  Sum_probs=40.0

Q ss_pred             HHHHHh-ccCCcccCceeEEEEeeC-CcEEEEE-cCCc--EEEcCEEEEecCchhh
Q 010542          247 VINTLA-KGLDIRLGHRVTKITRHY-IGVKVTV-EGGK--TFVADAVVVAVPLGVL  297 (507)
Q Consensus       247 l~~~l~-~g~~i~~~~~V~~I~~~~-~~v~v~~-~~g~--~~~ad~VI~a~p~~~~  297 (507)
                      |.+.+. .|++|+++++|++|..++ +.+.|++ .+|+  ++++|.||.|.+....
T Consensus       109 L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~~S~  164 (394)
T 1k0i_A          109 LMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGI  164 (394)
T ss_dssp             HHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTCS
T ss_pred             HHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence            444443 388999999999999864 5677777 7887  6999999999987643

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.84  E-value=1.7e-08  Score=96.02  Aligned_cols=39  Identities=28%  Similarity=0.437  Sum_probs=35.2

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCCCCCcee
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESRDRVGGRV   67 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~~~GG~~   67 (507)
                      ++||+|||||++||+||+.|++.|+ +|+|+|++ .+||.+
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~   40 (311)
T 2q0l_A            1 MIDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQI   40 (311)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGG
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCccc
Confidence            3799999999999999999999999 99999994 677754

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.83  E-value=8.2e-09  Score=100.82  Aligned_cols=42  Identities=24%  Similarity=0.116  Sum_probs=37.4

Q ss_pred             cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          254 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       254 g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      |++++++++|++|..+++++.|++.+| ++.||+||+|++...
T Consensus       102 gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~  143 (369)
T 3d1c_A          102 ELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYN  143 (369)
T ss_dssp             TCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTT
T ss_pred             CCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCC
Confidence            889999999999999888888988877 799999999998754

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.83  E-value=5.9e-08  Score=101.21  Aligned_cols=40  Identities=25%  Similarity=0.345  Sum_probs=35.9

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR   66 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~   66 (507)
                      ..+||+|||||++||+||+.|+++|.+|+|+||....+|.
T Consensus         4 ~~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~~g~   43 (660)
T 2bs2_A            4 QYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSH   43 (660)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSG
T ss_pred             ccccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCCCCc
Confidence            3589999999999999999999999999999998766554

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.82  E-value=8.9e-09  Score=105.96  Aligned_cols=39  Identities=23%  Similarity=0.330  Sum_probs=35.4

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG   65 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG   65 (507)
                      ..+||+|||||++||++|..|++.|.+|+|+|+.+.++.
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~   63 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTIT   63 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            458999999999999999999999999999999876643

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.80  E-value=3.9e-08  Score=98.96  Aligned_cols=42  Identities=26%  Similarity=0.489  Sum_probs=38.0

Q ss_pred             CCeEEEECccHHHHHHHHHHHh---CCCe---EEEEecCCCCCceeEe
Q 010542           28 SPSVIVIGAGMAGVAAARALHD---ASFK---VVLLESRDRVGGRVHT   69 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~---~G~~---V~vlE~~~~~GG~~~s   69 (507)
                      .+||+|||||++||+||..|++   .|++   |+|||+++.+||.+..
T Consensus         2 ~~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~   49 (464)
T 2xve_A            2 ATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNY   49 (464)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSC
T ss_pred             CCcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeec
Confidence            3799999999999999999999   9999   9999999999997643

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.80  E-value=1.1e-08  Score=103.70  Aligned_cols=40  Identities=33%  Similarity=0.444  Sum_probs=37.0

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG   65 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG   65 (507)
                      ...+||+|||||++||++|..|++.|++|+|+|+++.+|+
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~  129 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSR  129 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCC
T ss_pred             cCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCC
Confidence            4578999999999999999999999999999999988764

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.80  E-value=1.7e-08  Score=95.10  Aligned_cols=40  Identities=35%  Similarity=0.582  Sum_probs=36.9

Q ss_pred             CCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCcee
Q 010542           28 SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRV   67 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~~   67 (507)
                      .+||+|||||++||+||+.|+++  |++|+|+|+.+.+||.+
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~  106 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGS  106 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTT
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccc
Confidence            45999999999999999999998  99999999999998754

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.80  E-value=3.2e-08  Score=101.25  Aligned_cols=39  Identities=33%  Similarity=0.526  Sum_probs=34.7

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR   66 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~   66 (507)
                      ..+||+|||||++||+||+.|++ |.+|+|+||....||.
T Consensus         7 ~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~   45 (540)
T 1chu_A            7 HSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGS   45 (540)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC--
T ss_pred             CCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCCC
Confidence            46899999999999999999999 9999999998877764

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.79  E-value=2.9e-08  Score=90.02  Aligned_cols=35  Identities=29%  Similarity=0.402  Sum_probs=32.9

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +.+||+|||||++||++|..|++.|.+|+|+|++.
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~   36 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   36 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            46899999999999999999999999999999973

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.79  E-value=3.6e-08  Score=92.96  Aligned_cols=35  Identities=34%  Similarity=0.532  Sum_probs=32.8

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ++||+|||||++||+||+.|++.|++|+|+|++..
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~   36 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGER   36 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCc
Confidence            58999999999999999999999999999999653

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.78  E-value=2.7e-09  Score=102.35  Aligned_cols=69  Identities=28%  Similarity=0.411  Sum_probs=50.7

Q ss_pred             CCCeEEEECccHHHHHHHHHHHh--CCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCe
Q 010542           27 RSPSVIVIGAGMAGVAAARALHD--ASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL  104 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~--~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~  104 (507)
                      ..+||+|||||++||+||++|++  .|++|+|||+++.+||.+..   .++.+.  ...+     ...+.++++++|++.
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~---~~~~~~--~~~l-----~~~~~~~~~e~Gv~~  133 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL---GGQLFS--AMVM-----RKPAHLFLQELEIPY  133 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC---CSTTCC--CEEE-----ETTTHHHHHHTTCCC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEe---CCccCC--HHHH-----HHHHHHHHHHcCCEE
Confidence            45799999999999999999975  59999999999999997642   122111  0111     234567888888874


Q ss_pred             e
Q 010542          105 Y  105 (507)
Q Consensus       105 ~  105 (507)
                      .
T Consensus       134 ~  134 (326)
T 3fpz_A          134 E  134 (326)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.77  E-value=2.9e-08  Score=95.10  Aligned_cols=40  Identities=33%  Similarity=0.520  Sum_probs=36.9

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      +++||+|||||++||+||+.|++.|++|+|+|++ .+||.+
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~   46 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQI   46 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGG
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCccc
Confidence            4689999999999999999999999999999997 788865

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.77  E-value=3.4e-08  Score=85.73  Aligned_cols=41  Identities=20%  Similarity=0.195  Sum_probs=36.7

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      .|++++++ +|++|+.+++++.+++.+| ++.+|.||+|++..
T Consensus        69 ~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~  109 (180)
T 2ywl_A           69 YGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKD  109 (180)
T ss_dssp             TTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTC
T ss_pred             cCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCC
Confidence            38899999 9999998888888998888 89999999999864

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.72  E-value=9.2e-08  Score=96.31  Aligned_cols=36  Identities=42%  Similarity=0.649  Sum_probs=33.1

Q ss_pred             eEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542           30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR   66 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~   66 (507)
                      ||+|||||++||+||+.|++.|.+|+|+||. ..||.
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~g~   36 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDGGS   36 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTCSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCch
Confidence            7999999999999999999999999999998 55554

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=98.71  E-value=2.3e-07  Score=97.41  Aligned_cols=35  Identities=37%  Similarity=0.649  Sum_probs=32.9

Q ss_pred             CCeEEEECccHHHHHHHHHHHh-----CCCeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHD-----ASFKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~-----~G~~V~vlE~~~~   62 (507)
                      .+||+|||||++||++|..|++     .|++|+|+|+.+.
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~   47 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   47 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCC
Confidence            5899999999999999999999     9999999999754

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.71  E-value=3.3e-08  Score=94.38  Aligned_cols=41  Identities=27%  Similarity=0.493  Sum_probs=36.3

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ++.+||+|||||++||+||+.|++.|++|+|+|+ ..+||.+
T Consensus         3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~   43 (320)
T 1trb_A            3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQL   43 (320)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECC-SSTTGGG
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEcc-CCCCceE
Confidence            3568999999999999999999999999999997 4677754

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.70  E-value=1.8e-07  Score=96.92  Aligned_cols=39  Identities=28%  Similarity=0.382  Sum_probs=35.3

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCC--CeEEEEecCCCCCce
Q 010542           28 SPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVGGR   66 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~~~GG~   66 (507)
                      .+||+|||||++||+||+.|+++|  .+|+|+||....+|.
T Consensus         5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~   45 (602)
T 1kf6_A            5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSH   45 (602)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSG
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCCh
Confidence            589999999999999999999999  999999998766553

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.70  E-value=1.2e-07  Score=95.82  Aligned_cols=42  Identities=31%  Similarity=0.524  Sum_probs=38.8

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      +.++||+|||||++|++||..|++.|++|+|+|+++.+||.+
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~   45 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTC   45 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSH
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccc
Confidence            356999999999999999999999999999999998898865

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.69  E-value=3.9e-08  Score=98.73  Aligned_cols=49  Identities=18%  Similarity=0.220  Sum_probs=40.4

Q ss_pred             HHHHHHhc-cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542          246 PVINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       246 ~l~~~l~~-g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      .+.+.+.+ |++++++++|++|+..++++.|++.+| ++.+|.||+|++..
T Consensus       194 ~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G~~  243 (452)
T 3oc4_A          194 EVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALNLH  243 (452)
T ss_dssp             HHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSCCB
T ss_pred             HHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcCCC
Confidence            34445543 889999999999998888888888777 89999999999754

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.69  E-value=5.3e-08  Score=93.71  Aligned_cols=41  Identities=34%  Similarity=0.459  Sum_probs=36.4

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      .+++||+|||||++||+||+.|++.|++|+|+|+. .+||.+
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~   52 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGAL   52 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGG
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCce
Confidence            45789999999999999999999999999999974 677743

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.69  E-value=3.3e-08  Score=94.98  Aligned_cols=40  Identities=30%  Similarity=0.286  Sum_probs=34.8

Q ss_pred             cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542          254 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       254 g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      |+++++++ |++|+.+++.+.|++ +|.++.+|.||+|++..
T Consensus        84 gv~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~  123 (333)
T 1vdc_A           84 GTTIFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAV  123 (333)
T ss_dssp             TCEEECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEE
T ss_pred             CCEEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCC
Confidence            77888887 999998888888887 77799999999999864

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.67  E-value=5.5e-08  Score=101.12  Aligned_cols=39  Identities=18%  Similarity=0.342  Sum_probs=35.3

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVG   64 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~G   64 (507)
                      .+++||+|||||++||+||+.|++.  |++|+|+|+++.+|
T Consensus        34 ~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~   74 (588)
T 3ics_A           34 WGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYIS   74 (588)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             ccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            4578999999999999999999998  89999999987654

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.66  E-value=2.2e-07  Score=92.14  Aligned_cols=48  Identities=25%  Similarity=0.343  Sum_probs=40.2

Q ss_pred             HHHHh-ccCCcccCceeEEEEeeCCcE-EEEEcCCcEEEcCEEEEecCch
Q 010542          248 INTLA-KGLDIRLGHRVTKITRHYIGV-KVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       248 ~~~l~-~g~~i~~~~~V~~I~~~~~~v-~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      .+.+. .|++++++++|++|..+++++ .|++.+|+++.||.||+|++..
T Consensus       201 ~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~  250 (415)
T 3lxd_A          201 QAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIV  250 (415)
T ss_dssp             HHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCE
T ss_pred             HHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCc
Confidence            33443 399999999999999887776 5888999999999999999864

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.66  E-value=8.5e-08  Score=97.11  Aligned_cols=41  Identities=34%  Similarity=0.516  Sum_probs=38.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      .++||+|||||++|++||..|++.|++|+|+|+++.+||.+
T Consensus         5 ~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~   45 (482)
T 1ojt_A            5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVC   45 (482)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCce
Confidence            46899999999999999999999999999999988999855

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.65  E-value=1.2e-07  Score=95.58  Aligned_cols=39  Identities=23%  Similarity=0.339  Sum_probs=36.1

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCC-----CeEEEEecCCCCCc
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDAS-----FKVVLLESRDRVGG   65 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G-----~~V~vlE~~~~~GG   65 (507)
                      ..+||+|||||++||+||..|++.|     .+|+|||+++.+|.
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~   72 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRW   72 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCC
Confidence            4579999999999999999999999     99999999998873

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.65  E-value=7.8e-08  Score=91.35  Aligned_cols=42  Identities=14%  Similarity=0.158  Sum_probs=35.9

Q ss_pred             cCCcccCceeEEEEeeC---CcEEEEEcCCcEEEcCEEEEecCch
Q 010542          254 GLDIRLGHRVTKITRHY---IGVKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       254 g~~i~~~~~V~~I~~~~---~~v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      |++++++++|+.|..+.   +.+.|++.+|+++.||+||+|++..
T Consensus        70 ~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~  114 (310)
T 1fl2_A           70 DVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAK  114 (310)
T ss_dssp             CEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEE
T ss_pred             CCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCC
Confidence            77899999999998753   3688888888899999999999864

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.65  E-value=2.9e-08  Score=101.43  Aligned_cols=39  Identities=31%  Similarity=0.409  Sum_probs=35.1

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC-CCCc
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD-RVGG   65 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~-~~GG   65 (507)
                      ..+||+|||||++|++||+.|++.|.+|+|+|++. .+|+
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~   65 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQ   65 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCC
Confidence            46999999999999999999999999999999974 5553

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.65  E-value=9.3e-08  Score=97.66  Aligned_cols=42  Identities=14%  Similarity=0.119  Sum_probs=36.2

Q ss_pred             cCCcccCceeEEEEeeCCc--EEEEEcCCcEEEcCEEEEecCchh
Q 010542          254 GLDIRLGHRVTKITRHYIG--VKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       254 g~~i~~~~~V~~I~~~~~~--v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      |++++.+ +|++|..++++  +.|++.+|+++++|.||.|++...
T Consensus       187 gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S  230 (511)
T 2weu_A          187 GVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRG  230 (511)
T ss_dssp             TCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGC
T ss_pred             CCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcch
Confidence            8899999 99999986554  568888888899999999999864

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.65  E-value=3.2e-08  Score=101.52  Aligned_cols=38  Identities=34%  Similarity=0.428  Sum_probs=34.4

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC-CCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD-RVG   64 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~-~~G   64 (507)
                      ..+||+|||||++|++||+.|++.|.+|+|+|++. .+|
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG   65 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLG   65 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccc
Confidence            46999999999999999999999999999999974 444

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.64  E-value=1.7e-08  Score=96.13  Aligned_cols=40  Identities=35%  Similarity=0.506  Sum_probs=36.8

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ..|||+|||||++||+||.+|++.|++|+|+|+ +.+||.|
T Consensus         5 ~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~-~~~gG~~   44 (312)
T 4gcm_A            5 IDFDIAIIGAGPAGMTAAVYASRANLKTVMIER-GIPGGQM   44 (312)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTGGG
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEec-CCCCCee
Confidence            369999999999999999999999999999998 5788865

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.61  E-value=2e-07  Score=95.97  Aligned_cols=50  Identities=24%  Similarity=0.213  Sum_probs=39.3

Q ss_pred             HHHHHHh-c-cCCcccCceeEEEEeeCCc--EEEEEcCCcEEEcCEEEEecCchh
Q 010542          246 PVINTLA-K-GLDIRLGHRVTKITRHYIG--VKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       246 ~l~~~l~-~-g~~i~~~~~V~~I~~~~~~--v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      .|.+.+. . |++++++ +|++|..++++  +.|++.+|+++.||.||.|++...
T Consensus       199 ~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S  252 (550)
T 2e4g_A          199 FLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRG  252 (550)
T ss_dssp             HHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGC
T ss_pred             HHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCch
Confidence            3444443 3 8999999 99999886554  568888898899999999998764

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.59  E-value=1.7e-07  Score=95.64  Aligned_cols=40  Identities=33%  Similarity=0.503  Sum_probs=35.7

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ...+||+|||||++||+||++|++.|++|+|+|+  ++||.+
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~  249 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQV  249 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGG
T ss_pred             cCcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCcc
Confidence            3578999999999999999999999999999996  577754

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.58  E-value=1.3e-07  Score=96.98  Aligned_cols=40  Identities=35%  Similarity=0.441  Sum_probs=34.8

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC-CCCc
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD-RVGG   65 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~-~~GG   65 (507)
                      ...+||+|||||++|++||+.|++.|.+|+|+|++. .+|+
T Consensus        19 ~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~   59 (641)
T 3cp8_A           19 SHMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVAR   59 (641)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCC
Confidence            456999999999999999999999999999999974 3443

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.57  E-value=1.4e-06  Score=91.01  Aligned_cols=36  Identities=28%  Similarity=0.491  Sum_probs=33.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHH---h-CCCeEEEEecCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALH---D-ASFKVVLLESRDR   62 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~---~-~G~~V~vlE~~~~   62 (507)
                      ..+||+|||||++||+||+.|+   + +|.+|+|+||...
T Consensus        21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~   60 (643)
T 1jnr_A           21 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV   60 (643)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred             ccCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCC
Confidence            4689999999999999999999   6 8999999999875

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.55  E-value=3.2e-08  Score=94.28  Aligned_cols=39  Identities=36%  Similarity=0.450  Sum_probs=34.9

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG   65 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG   65 (507)
                      ++.|||+|||||++||+||.+|++.|++|+|+|+.. .||
T Consensus         2 ~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~-~gg   40 (314)
T 4a5l_A            2 SNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFM-AGG   40 (314)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS-GGG
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCC
Confidence            457999999999999999999999999999999954 444

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.49  E-value=1.2e-07  Score=92.22  Aligned_cols=40  Identities=23%  Similarity=0.351  Sum_probs=35.6

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG   65 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG   65 (507)
                      .+++||+|||||++||++|++|+++|++|+|+|+....+|
T Consensus         4 ~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~~g   43 (363)
T 1c0p_A            4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV   43 (363)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCCCc
Confidence            4578999999999999999999999999999999764433

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.49  E-value=4.3e-07  Score=88.84  Aligned_cols=38  Identities=26%  Similarity=0.482  Sum_probs=33.5

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      .++.+|+|||||++|++||..|.+.+.+|+|+|+++..
T Consensus         7 ~~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~   44 (385)
T 3klj_A            7 HKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYL   44 (385)
T ss_dssp             -CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSC
T ss_pred             cCCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence            35688999999999999999997778999999998754

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.47  E-value=2.7e-07  Score=93.15  Aligned_cols=37  Identities=27%  Similarity=0.369  Sum_probs=31.0

Q ss_pred             CCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVG   64 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~G   64 (507)
                      ++||+|||||++||+||+.|++.  |++|+|||+++.++
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~   41 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRIS   41 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC----
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccc
Confidence            47999999999999999999998  89999999987653

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.44  E-value=1e-07  Score=96.80  Aligned_cols=42  Identities=31%  Similarity=0.461  Sum_probs=37.7

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      .+++||+|||||++||+||+.|++.|++|+|+|+++.+||.|
T Consensus        23 m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~   64 (491)
T 3urh_A           23 MMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTC   64 (491)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHH
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence            356999999999999999999999999999999999999965

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.43  E-value=6.2e-07  Score=88.77  Aligned_cols=35  Identities=20%  Similarity=0.318  Sum_probs=32.1

Q ss_pred             CCeEEEECccHHHHHHHHHHHh---CCCeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHD---ASFKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~---~G~~V~vlE~~~~   62 (507)
                      ++||+|||||++||+||..|++   .|++|+|+|+++.
T Consensus         1 m~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~   38 (409)
T 3h8l_A            1 MTKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRF   38 (409)
T ss_dssp             -CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCC
Confidence            3689999999999999999999   8999999999874

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.40  E-value=6.5e-07  Score=92.59  Aligned_cols=37  Identities=19%  Similarity=0.384  Sum_probs=33.2

Q ss_pred             CCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVG   64 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~G   64 (507)
                      ++||+|||||++||+||+.|++.  |++|+|+|+++.+|
T Consensus         1 M~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~   39 (565)
T 3ntd_A            1 MKKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVS   39 (565)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            36999999999999999999998  78999999987643

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.40  E-value=1.1e-07  Score=95.97  Aligned_cols=42  Identities=33%  Similarity=0.525  Sum_probs=39.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      +.+||+|||||++||+||..|++.|++|+|+|+++.+||.+.
T Consensus         3 ~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~   44 (466)
T 3l8k_A            3 LKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCL   44 (466)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCccc
Confidence            358999999999999999999999999999999999999763

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.40  E-value=1.6e-07  Score=89.61  Aligned_cols=42  Identities=33%  Similarity=0.556  Sum_probs=37.2

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      +.+.+||+|||||++||+||+.|++.|++|+|+|+ ..+||.+
T Consensus        13 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~   54 (319)
T 3cty_A           13 KERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLT   54 (319)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGG
T ss_pred             ccCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCccc
Confidence            44568999999999999999999999999999999 5778865

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.36  E-value=2.5e-07  Score=94.48  Aligned_cols=43  Identities=30%  Similarity=0.483  Sum_probs=37.9

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC--------CCCcee
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD--------RVGGRV   67 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~--------~~GG~~   67 (507)
                      +...+||+|||||++||+||..|++.|++|+|+|+.+        .+||.|
T Consensus        29 ~~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc   79 (519)
T 3qfa_A           29 KSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTC   79 (519)
T ss_dssp             SSCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHH
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCccccc
Confidence            4457899999999999999999999999999999964        677754

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.36  E-value=3e-07  Score=91.90  Aligned_cols=42  Identities=43%  Similarity=0.590  Sum_probs=39.4

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ...+||+|||||++||+||+.|++.|++|+|||+++++||.+
T Consensus       120 ~~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l  161 (456)
T 2vdc_G          120 ELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLL  161 (456)
T ss_dssp             SCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCee
Confidence            457899999999999999999999999999999999999975

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.36  E-value=2.1e-07  Score=93.74  Aligned_cols=40  Identities=33%  Similarity=0.418  Sum_probs=37.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      .++||+|||||++||+||+.|++.|++|+|+|+ +.+||.|
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~   43 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTC   43 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHH
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCcc
Confidence            368999999999999999999999999999999 7899965

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.36  E-value=2.8e-07  Score=94.22  Aligned_cols=44  Identities=23%  Similarity=0.345  Sum_probs=40.4

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      ...++||+|||||++|++||++|++.|++|+|+|+++.+||.+.
T Consensus        40 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~   83 (523)
T 1mo9_A           40 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCP   83 (523)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHH
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCccc
Confidence            56679999999999999999999999999999999988998753

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.33  E-value=4.1e-07  Score=96.20  Aligned_cols=45  Identities=42%  Similarity=0.665  Sum_probs=41.2

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEe
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT   69 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s   69 (507)
                      ....+||+|||||++||+||+.|+++|++|+|+|+++.+||.+..
T Consensus       388 ~~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~  432 (690)
T 3k30_A          388 KESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQ  432 (690)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHH
T ss_pred             ccccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeee
Confidence            356789999999999999999999999999999999999998653

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.32  E-value=2.9e-07  Score=92.81  Aligned_cols=41  Identities=29%  Similarity=0.439  Sum_probs=38.5

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      ++||+|||||++|++||.+|++.|++|+|+|+++.+||.+.
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~   42 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCL   42 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCC
Confidence            58999999999999999999999999999999989999753

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.32  E-value=2.4e-07  Score=89.74  Aligned_cols=37  Identities=27%  Similarity=0.419  Sum_probs=33.3

Q ss_pred             CeEEEECccHHHHHHHHHHHhCC------CeEEEEecCCCCCc
Q 010542           29 PSVIVIGAGMAGVAAARALHDAS------FKVVLLESRDRVGG   65 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G------~~V~vlE~~~~~GG   65 (507)
                      +||+|||||++||++|++|+++|      ++|+|+|+....+|
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~~~~   43 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLT   43 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCGGGS
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCCCCC
Confidence            59999999999999999999998      89999999765444

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.31  E-value=2.6e-07  Score=87.76  Aligned_cols=41  Identities=29%  Similarity=0.446  Sum_probs=37.6

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEE-EecCCCCCceeE
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVL-LESRDRVGGRVH   68 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~v-lE~~~~~GG~~~   68 (507)
                      .++||+|||||++||+||+.|++.|++|+| +|+ +.+||.+.
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~   44 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQIT   44 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGG
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceee
Confidence            468999999999999999999999999999 999 78898753

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.30  E-value=3.8e-07  Score=92.19  Aligned_cols=41  Identities=34%  Similarity=0.423  Sum_probs=36.9

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      +++||+|||||++||+||++|++.|++|+|+|+++.+||..
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~   42 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKT   42 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCC
Confidence            46999999999999999999999999999999988665543

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.30  E-value=4.1e-07  Score=90.58  Aligned_cols=36  Identities=22%  Similarity=0.353  Sum_probs=31.9

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      .+++||+|||||++||++|+.|+++|++|+|+|+..
T Consensus        20 ~m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           20 HMKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             ---CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             cCCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            356899999999999999999999999999999975

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.28  E-value=3.7e-07  Score=90.20  Aligned_cols=39  Identities=28%  Similarity=0.353  Sum_probs=34.9

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCc
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGG   65 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG   65 (507)
                      ..+||+|||||++||++|+.|+++  |++|+|+|+....+|
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~   75 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNE   75 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCT
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCc
Confidence            358999999999999999999999  999999999765544

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.27  E-value=1.3e-06  Score=88.63  Aligned_cols=41  Identities=27%  Similarity=0.229  Sum_probs=30.9

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG   65 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG   65 (507)
                      ..+.+||+|||||++||++|..|.+.|...+++|+.+..|+
T Consensus        36 ~~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~   76 (501)
T 4b63_A           36 QDELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQ   76 (501)
T ss_dssp             TTSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CC
T ss_pred             CCCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCC
Confidence            45678999999999999999999987776666666655554

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.27  E-value=6e-07  Score=90.46  Aligned_cols=41  Identities=34%  Similarity=0.450  Sum_probs=37.6

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ..++||+|||||++|++||++|++.|++|+|+|++ .+||.+
T Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~   42 (467)
T 1zk7_A            2 EPPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTC   42 (467)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCccc
Confidence            35689999999999999999999999999999997 788865

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.26  E-value=3.6e-07  Score=92.46  Aligned_cols=41  Identities=32%  Similarity=0.549  Sum_probs=37.4

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ..++||+|||||++||+||+.|++.|++|+|+|++ .+||.|
T Consensus        18 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~   58 (478)
T 3dk9_A           18 VASYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTC   58 (478)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcc
Confidence            35699999999999999999999999999999975 788875

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.25  E-value=4.2e-07  Score=91.82  Aligned_cols=41  Identities=34%  Similarity=0.516  Sum_probs=38.7

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      .++||+|||||++|++||..|++.|++|+|+|+++.+||.+
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~   45 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTC   45 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcc
Confidence            46899999999999999999999999999999998999975

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.25  E-value=5.6e-07  Score=90.51  Aligned_cols=50  Identities=20%  Similarity=0.311  Sum_probs=41.3

Q ss_pred             HHHHHHh-ccCCcccCceeEEEEeeCCcEEEEEcCCc-EEEcCEEEEecCch
Q 010542          246 PVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGK-TFVADAVVVAVPLG  295 (507)
Q Consensus       246 ~l~~~l~-~g~~i~~~~~V~~I~~~~~~v~v~~~~g~-~~~ad~VI~a~p~~  295 (507)
                      .+.+.+. .|++++++++|++|+.+++++.|++.+|+ ++.+|.||+|++..
T Consensus       212 ~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~  263 (463)
T 2r9z_A          212 TLAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRA  263 (463)
T ss_dssp             HHHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEE
T ss_pred             HHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCC
Confidence            3444454 48999999999999987777888889998 89999999999754

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.23  E-value=3.5e-07  Score=92.56  Aligned_cols=41  Identities=34%  Similarity=0.582  Sum_probs=38.4

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      +++||+|||||++|++||..|++.|++|+|+|+++.+||.+
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~   44 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTC   44 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCcc
Confidence            45899999999999999999999999999999999999865

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.23  E-value=5.9e-07  Score=90.22  Aligned_cols=41  Identities=32%  Similarity=0.429  Sum_probs=38.1

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      ++||+|||||++|++||..|++.|++|+|+|+++.+||.+.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~   41 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCL   41 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccc
Confidence            37999999999999999999999999999999989999753

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.22  E-value=5.2e-07  Score=90.40  Aligned_cols=40  Identities=28%  Similarity=0.460  Sum_probs=37.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      +++||+|||||++|++||++|++.|++|+|+|++ .+||.|
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~   42 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTC   42 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC-CCCCcc
Confidence            4689999999999999999999999999999997 789875

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.22  E-value=6.2e-07  Score=90.90  Aligned_cols=42  Identities=29%  Similarity=0.442  Sum_probs=37.8

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEec--------CCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLES--------RDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~--------~~~~GG~~   67 (507)
                      ..++||+|||||++||+||..|++.|++|+|+|+        ...+||-|
T Consensus         4 ~~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc   53 (488)
T 3dgz_A            4 QQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTC   53 (488)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCee
Confidence            4579999999999999999999999999999998        56788855

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.21  E-value=1e-06  Score=93.50  Aligned_cols=44  Identities=32%  Similarity=0.671  Sum_probs=40.6

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEe
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT   69 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s   69 (507)
                      ...+||+|||||++||+||+.|++.|++|+|+|+++.+||.+..
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~  430 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQ  430 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeee
Confidence            45789999999999999999999999999999999999997643

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.21  E-value=1.1e-06  Score=86.16  Aligned_cols=35  Identities=34%  Similarity=0.536  Sum_probs=33.0

Q ss_pred             CeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRV   63 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~   63 (507)
                      +||+|||||++||++|..|+++  |++|+|+|+++.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            5899999999999999999999  9999999998766

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.18  E-value=7.3e-07  Score=90.08  Aligned_cols=41  Identities=34%  Similarity=0.542  Sum_probs=37.5

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      +++||+|||||++|++||+.|++.|++|+|+|++ .+||.|.
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~   50 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAK-ALGGTCV   50 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESS-CTTHHHH
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC-CcCCcCc
Confidence            4689999999999999999999999999999996 7888763

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.18  E-value=8.2e-07  Score=89.95  Aligned_cols=49  Identities=22%  Similarity=0.293  Sum_probs=39.8

Q ss_pred             HHHHHh-ccCCcccCceeEEEEeeCC-cEEEEEcCCcEEEcCEEEEecCch
Q 010542          247 VINTLA-KGLDIRLGHRVTKITRHYI-GVKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       247 l~~~l~-~g~~i~~~~~V~~I~~~~~-~v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      +.+.|. +|++++++++|++|..+++ .+.|++.+|+++.+|.||+|++..
T Consensus       237 l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~  287 (490)
T 1fec_A          237 LTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRV  287 (490)
T ss_dssp             HHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEE
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCC
Confidence            444444 4899999999999998764 477888899889999999999754

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.17  E-value=6.7e-07  Score=90.90  Aligned_cols=50  Identities=22%  Similarity=0.325  Sum_probs=41.4

Q ss_pred             HHHHHHh-ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542          246 PVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       246 ~l~~~l~-~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      .+.+.+. .|++++++++|++|..+++++.+++.+|+++.+|.||+|++..
T Consensus       228 ~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~  278 (499)
T 1xdi_A          228 VLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSV  278 (499)
T ss_dssp             HHHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEE
T ss_pred             HHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCC
Confidence            3444444 3999999999999998877788888888899999999999754

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.16  E-value=6.7e-07  Score=90.66  Aligned_cols=50  Identities=28%  Similarity=0.348  Sum_probs=40.2

Q ss_pred             HHHHHHh-ccCCcccCceeEEEEeeCC-cEEEEEcCCcEEEcCEEEEecCch
Q 010542          246 PVINTLA-KGLDIRLGHRVTKITRHYI-GVKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       246 ~l~~~l~-~g~~i~~~~~V~~I~~~~~-~v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      .+.+.|. +|++++++++|++|..+++ .+.|++.+|+++.+|.||+|++..
T Consensus       240 ~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~  291 (495)
T 2wpf_A          240 EVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRI  291 (495)
T ss_dssp             HHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEE
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCc
Confidence            3444454 4999999999999998764 477888899899999999999753

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.16  E-value=1e-06  Score=89.28  Aligned_cols=39  Identities=38%  Similarity=0.517  Sum_probs=36.2

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      .+||+|||||++||+||..|++.|++|+|+|++ .+||.|
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~-~~GGtc   46 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGG-AYGTTC   46 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESS-CSSCHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC-CCCCcc
Confidence            489999999999999999999999999999996 588865

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.14  E-value=8.1e-07  Score=89.23  Aligned_cols=41  Identities=27%  Similarity=0.445  Sum_probs=38.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      .++||+|||||++|++||..|++.|++|+|+|+ +.+||.|.
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~   44 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCL   44 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCC
Confidence            468999999999999999999999999999999 78999764

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.14  E-value=1.6e-06  Score=90.14  Aligned_cols=41  Identities=27%  Similarity=0.431  Sum_probs=37.6

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ..+||+|||||++||+||+.|++.|++|+|+|+.+..||.+
T Consensus        45 ~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~   85 (623)
T 3pl8_A           45 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLK   85 (623)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSS
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCcc
Confidence            46899999999999999999999999999999999988844

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.13  E-value=1.2e-06  Score=88.98  Aligned_cols=39  Identities=44%  Similarity=0.624  Sum_probs=36.3

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ++||+|||||.+|++||..|++.|++|+|+|++ .+||.|
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~c   40 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTC   40 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC-CcCccc
Confidence            589999999999999999999999999999997 588865

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.13  E-value=1.1e-06  Score=88.25  Aligned_cols=39  Identities=31%  Similarity=0.459  Sum_probs=36.6

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ++||+|||||++|++||..|++.|++|+|+|++ .+||.+
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~   41 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVC   41 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcC
Confidence            589999999999999999999999999999997 888865

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.13  E-value=2e-05  Score=77.09  Aligned_cols=43  Identities=26%  Similarity=0.398  Sum_probs=38.8

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      .|++++++++|++|..+++++.|++.+|+++.+|.||+|++..
T Consensus       200 ~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~  242 (384)
T 2v3a_A          200 LGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLR  242 (384)
T ss_dssp             TTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEE
T ss_pred             cCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCC
Confidence            4889999999999998888888888899899999999999864

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.12  E-value=1.5e-06  Score=87.96  Aligned_cols=34  Identities=32%  Similarity=0.400  Sum_probs=31.9

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEec
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLES   59 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~   59 (507)
                      ...+||+|||||++||+||++|++.|++|+|+|+
T Consensus         7 ~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk   40 (483)
T 3dgh_A            7 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDF   40 (483)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEe
Confidence            3579999999999999999999999999999995

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.12  E-value=1e-06  Score=88.64  Aligned_cols=39  Identities=28%  Similarity=0.423  Sum_probs=36.3

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ++||+|||||++|++||..|++.|++|+|+|++ .+||.+
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~   41 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVC   41 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCcc
Confidence            479999999999999999999999999999997 788865

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.09  E-value=2.7e-06  Score=87.28  Aligned_cols=44  Identities=18%  Similarity=0.297  Sum_probs=36.4

Q ss_pred             ccCCcccCceeEEEEeeCCc--EEEEEcCCcEEEcCEEEEecCchhh
Q 010542          253 KGLDIRLGHRVTKITRHYIG--VKVTVEGGKTFVADAVVVAVPLGVL  297 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~--v~v~~~~g~~~~ad~VI~a~p~~~~  297 (507)
                      .|++++.+ +|++|..++++  +.|++.+|+++.||.||.|++....
T Consensus       178 ~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~  223 (538)
T 2aqj_A          178 RGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGL  223 (538)
T ss_dssp             TTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCC
T ss_pred             CCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchh
Confidence            38899999 89999886554  4688888888999999999987653

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.09  E-value=2.5e-06  Score=81.32  Aligned_cols=40  Identities=35%  Similarity=0.373  Sum_probs=35.6

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ++||+|||||++|+.||+.|++.|++|+|+|++...+.-.
T Consensus         1 m~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~tp~   40 (443)
T 3g5s_A            1 MERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTPA   40 (443)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSCCSS
T ss_pred             CCCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcCCcc
Confidence            4799999999999999999999999999999987655443

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.06  E-value=2.4e-05  Score=78.36  Aligned_cols=44  Identities=43%  Similarity=0.603  Sum_probs=38.8

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      .|++++++++|++|+.+++++.+++.+|+++.+|.||+|++...
T Consensus       221 ~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p  264 (455)
T 2yqu_A          221 QGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRP  264 (455)
T ss_dssp             HTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEE
T ss_pred             CCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCc
Confidence            38999999999999988888888888888999999999998643

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.06  E-value=3.6e-06  Score=88.71  Aligned_cols=42  Identities=29%  Similarity=0.515  Sum_probs=39.3

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ...+||+|||||++||+||..|++.|++|+|+|+++.+||.+
T Consensus       371 ~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~  412 (671)
T 1ps9_A          371 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQF  412 (671)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCee
Confidence            457899999999999999999999999999999999999975

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.02  E-value=2.7e-06  Score=85.56  Aligned_cols=39  Identities=36%  Similarity=0.519  Sum_probs=36.4

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ++||+|||||++|++||..|++.|++|+|+|+++ +||.|
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~   44 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVC   44 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCC
Confidence            5899999999999999999999999999999977 88865

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=98.01  E-value=2.3e-06  Score=87.41  Aligned_cols=60  Identities=20%  Similarity=0.292  Sum_probs=44.4

Q ss_pred             cccccccccchhhhcccCCCCCCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 010542            4 ASRSNRQLRRALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG   64 (507)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~G   64 (507)
                      |.||+...-....++..........+|+||||||.+|+++|.+|++ |.+|+|||+....+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~~   61 (536)
T 1ju2_A            2 ATTSDHDFSYLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLPT   61 (536)
T ss_dssp             CCCCCCCCGGGGGEEEGGGSCSEEEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCGG
T ss_pred             cccccCCcccCccccCcccccccCcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCcC
Confidence            3455555555554444333323467999999999999999999999 99999999976543

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.99  E-value=4.9e-06  Score=85.05  Aligned_cols=49  Identities=10%  Similarity=0.091  Sum_probs=37.9

Q ss_pred             HHHHHh--ccCCcccCceeEEEEeeCCc--EEEEEcCCcEEEcCEEEEecCchh
Q 010542          247 VINTLA--KGLDIRLGHRVTKITRHYIG--VKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       247 l~~~l~--~g~~i~~~~~V~~I~~~~~~--v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      |.+.+.  .|++++.+ +|++|..++++  +.|++.+|.+++||.||.|++...
T Consensus       181 L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S  233 (526)
T 2pyx_A          181 LTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKS  233 (526)
T ss_dssp             HHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGC
T ss_pred             HHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcch
Confidence            334444  38899999 59999887554  357777877899999999998864

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.97  E-value=3.3e-06  Score=84.42  Aligned_cols=42  Identities=29%  Similarity=0.326  Sum_probs=38.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHh-C------CCeEEEEecCCCCCceeE
Q 010542           27 RSPSVIVIGAGMAGVAAARALHD-A------SFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~-~------G~~V~vlE~~~~~GG~~~   68 (507)
                      +.+||+|||||++||+||..|++ .      |++|+|||+.+.+||.++
T Consensus         2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~   50 (456)
T 1lqt_A            2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR   50 (456)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccc
Confidence            35799999999999999999999 7      999999999989998763

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=97.97  E-value=3.5e-06  Score=87.80  Aligned_cols=38  Identities=21%  Similarity=0.301  Sum_probs=34.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhC------CCeEEEEecCCCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDA------SFKVVLLESRDRVG   64 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~------G~~V~vlE~~~~~G   64 (507)
                      ..+||+|||||++||+||+.|+++      |.+|+|+||....+
T Consensus        21 ~~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~~   64 (662)
T 3gyx_A           21 HSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLER   64 (662)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTTT
T ss_pred             EEcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCCC
Confidence            368999999999999999999997      99999999976544

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.97  E-value=4.3e-06  Score=92.07  Aligned_cols=41  Identities=27%  Similarity=0.516  Sum_probs=38.4

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCCCCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRDRVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~~~GG~~   67 (507)
                      ..+||+|||||++||+||++|++.|+ +|+|||+.+.+||.+
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~  227 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLS  227 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccc
Confidence            46899999999999999999999999 799999999999975

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.96  E-value=5.5e-06  Score=82.94  Aligned_cols=39  Identities=28%  Similarity=0.495  Sum_probs=34.6

Q ss_pred             CCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCce
Q 010542           28 SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGR   66 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~   66 (507)
                      ++||+|||||++||+||+.|++.  |++|+|+|+++.+++.
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~   43 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHA   43 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC--
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccC
Confidence            58999999999999999999997  7899999999887653

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.93  E-value=6e-05  Score=75.66  Aligned_cols=43  Identities=28%  Similarity=0.442  Sum_probs=36.9

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEc-C--Cc--EEEcCEEEEecCch
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVE-G--GK--TFVADAVVVAVPLG  295 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~-~--g~--~~~ad~VI~a~p~~  295 (507)
                      .|++++++++|++|+.+++++.+++. +  |+  ++.+|.||+|++..
T Consensus       223 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~  270 (464)
T 2eq6_A          223 EGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRK  270 (464)
T ss_dssp             TTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEE
T ss_pred             cCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcc
Confidence            48999999999999988877777776 6  76  89999999999754

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.93  E-value=7e-05  Score=74.84  Aligned_cols=43  Identities=14%  Similarity=0.281  Sum_probs=37.2

Q ss_pred             ccCCcccCceeEEEEeeCCc-EEEEEcCCcEEEcCEEEEecCch
Q 010542          253 KGLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      .|++++++++|++|+.++++ +.|++.+|+++.+|.||+|++..
T Consensus       221 ~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~  264 (450)
T 1ges_A          221 EGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGRE  264 (450)
T ss_dssp             HSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEE
T ss_pred             CCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCC
Confidence            38999999999999987654 77888899899999999999754

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.93  E-value=5.6e-05  Score=74.54  Aligned_cols=44  Identities=25%  Similarity=0.377  Sum_probs=38.1

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      +|+++++++.|++|..+++...|++.+|+++.+|.||+|++...
T Consensus       198 ~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~p  241 (410)
T 3ef6_A          198 LGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEP  241 (410)
T ss_dssp             HTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEEE
T ss_pred             CCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCee
Confidence            48999999999999987655578889999999999999998653

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.92  E-value=5.3e-06  Score=90.73  Aligned_cols=41  Identities=41%  Similarity=0.674  Sum_probs=39.2

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      .+||+|||||++||+||..|++.|++|+|+|+++++||.+.
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~  168 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLL  168 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGG
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceec
Confidence            57999999999999999999999999999999999999886

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.92  E-value=7.9e-05  Score=74.72  Aligned_cols=36  Identities=31%  Similarity=0.470  Sum_probs=32.8

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ..+|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~  201 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRL  201 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcc
Confidence            468999999999999999999999999999987643

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.92  E-value=3.3e-06  Score=85.49  Aligned_cols=40  Identities=38%  Similarity=0.606  Sum_probs=37.4

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      .+||+|||||++||+||++|++. ++|+|||+++++||.+.
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~  147 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMW  147 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGG
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeee
Confidence            46899999999999999999999 99999999999999764

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.88  E-value=8e-06  Score=81.74  Aligned_cols=42  Identities=29%  Similarity=0.363  Sum_probs=38.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCC--CeEEEEecCCCCCceeE
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVGGRVH   68 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~~~GG~~~   68 (507)
                      ..+||+|||||++|++||..|++.|  ++|+|||+.+.+||..+
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~   48 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVR   48 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceee
Confidence            4589999999999999999999998  99999999999998763

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.88  E-value=6.5e-06  Score=83.77  Aligned_cols=48  Identities=19%  Similarity=0.151  Sum_probs=41.3

Q ss_pred             HHHHHh-ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCc
Q 010542          247 VINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL  294 (507)
Q Consensus       247 l~~~l~-~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~  294 (507)
                      +.+.|. +|+++++++.|+++...++++.|++.++.++.+|.|++|++-
T Consensus       269 l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR  317 (542)
T 4b1b_A          269 VKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGR  317 (542)
T ss_dssp             HHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCE
T ss_pred             HHHHHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccc
Confidence            334444 399999999999999999999999999989999999999973

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=97.88  E-value=1e-05  Score=79.81  Aligned_cols=49  Identities=29%  Similarity=0.358  Sum_probs=40.5

Q ss_pred             HHHHHh-ccCCcccCceeEEEEeeCCcEE-EEEcCCcEEEcCEEEEecCch
Q 010542          247 VINTLA-KGLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       247 l~~~l~-~g~~i~~~~~V~~I~~~~~~v~-v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      +.+.+. .|++++++++|++|..+++++. |++.+|+++.+|.||+|++..
T Consensus       190 l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~  240 (404)
T 3fg2_P          190 FHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVI  240 (404)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCEE
T ss_pred             HHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCCc
Confidence            334443 3999999999999998877764 888999999999999999864

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.87  E-value=8.7e-06  Score=84.64  Aligned_cols=34  Identities=29%  Similarity=0.417  Sum_probs=32.3

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEec
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLES   59 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~   59 (507)
                      ...+||+|||||.+||+||.+|++.|++|+|+|+
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~  138 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDY  138 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCCeEEEEec
Confidence            4579999999999999999999999999999997

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=97.87  E-value=9.9e-05  Score=72.64  Aligned_cols=36  Identities=33%  Similarity=0.490  Sum_probs=33.0

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++|+.+++
T Consensus       142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  177 (404)
T 3fg2_P          142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRV  177 (404)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcc
Confidence            578999999999999999999999999999997654

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.86  E-value=1.2e-05  Score=79.35  Aligned_cols=41  Identities=27%  Similarity=0.412  Sum_probs=34.7

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      .|++++++++|+.|+.++.  .|++.+|+++.+|++|+|++..
T Consensus        70 ~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~~d~lvlAtG~~  110 (410)
T 3ef6_A           70 ARIDMLTGPEVTALDVQTR--TISLDDGTTLSADAIVIATGSR  110 (410)
T ss_dssp             TTCEEEESCCEEEEETTTT--EEEETTSCEEECSEEEECCCEE
T ss_pred             CCCEEEeCCEEEEEECCCC--EEEECCCCEEECCEEEEccCCc
Confidence            3889999999999987665  5666788899999999999854

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.85  E-value=1e-05  Score=81.64  Aligned_cols=38  Identities=29%  Similarity=0.337  Sum_probs=34.0

Q ss_pred             CCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCc
Q 010542           28 SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGG   65 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG   65 (507)
                      ++||+|||||++|++||..|++.  |.+|+|+|+++..|+
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~   75 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSY   75 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSB
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCC
Confidence            57999999999999999999996  899999999887653

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.84  E-value=1.5e-05  Score=79.14  Aligned_cols=49  Identities=29%  Similarity=0.326  Sum_probs=39.4

Q ss_pred             HHHHHh-ccCCcccCceeEEEEe--eCCcE-EEEEcCCcEEEcCEEEEecCch
Q 010542          247 VINTLA-KGLDIRLGHRVTKITR--HYIGV-KVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       247 l~~~l~-~g~~i~~~~~V~~I~~--~~~~v-~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      +.+.+. .|++++++++|++|..  +++++ .|++.+|+++.+|.||+|++..
T Consensus       197 l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~  249 (431)
T 1q1r_A          197 YEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLI  249 (431)
T ss_dssp             HHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEE
T ss_pred             HHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCC
Confidence            334444 3999999999999987  55666 5888899899999999999864

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.83  E-value=0.00013  Score=72.36  Aligned_cols=37  Identities=32%  Similarity=0.542  Sum_probs=33.4

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ...+|+|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus       148 ~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~  184 (431)
T 1q1r_A          148 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV  184 (431)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcc
Confidence            3578999999999999999999999999999996653

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.82  E-value=0.00011  Score=73.60  Aligned_cols=36  Identities=31%  Similarity=0.518  Sum_probs=33.2

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ..+|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  205 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI  205 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcc
Confidence            478999999999999999999999999999997654

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.81  E-value=1.4e-05  Score=80.11  Aligned_cols=37  Identities=27%  Similarity=0.277  Sum_probs=33.9

Q ss_pred             CeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCc
Q 010542           29 PSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGG   65 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG   65 (507)
                      +||+|||||++|++||..|++.  |.+|+|+|+++.+|.
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~   39 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISF   39 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCc
Confidence            5899999999999999999998  999999999887653

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.79  E-value=0.0001  Score=73.53  Aligned_cols=37  Identities=38%  Similarity=0.565  Sum_probs=33.8

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ...+|+|||||.+|+.+|..|++.|.+|+|+|+.+++
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  184 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP  184 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccc
Confidence            4589999999999999999999999999999997653

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.79  E-value=2e-05  Score=80.82  Aligned_cols=37  Identities=22%  Similarity=0.384  Sum_probs=33.6

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCC-CeEEEEecCCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRDR   62 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~~~   62 (507)
                      .+.+|+||||||.||+++|.+|++.| .+|+||||...
T Consensus         4 ~~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             TCEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CCcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            35699999999999999999999998 69999999765

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.79  E-value=1.6e-05  Score=79.59  Aligned_cols=36  Identities=25%  Similarity=0.354  Sum_probs=33.6

Q ss_pred             CeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVG   64 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~G   64 (507)
                      +||+|||||++|++||..|++.  |++|+|+|+++.+|
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~   38 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS   38 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccC
Confidence            5899999999999999999997  89999999988776

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.78  E-value=1.2e-05  Score=82.18  Aligned_cols=37  Identities=27%  Similarity=0.524  Sum_probs=31.6

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHh-CCCeEEEEecCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHD-ASFKVVLLESRD   61 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~-~G~~V~vlE~~~   61 (507)
                      ..+.||+||||||.+|+..|.+|++ .|++|+|||+..
T Consensus        14 ~~~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~   51 (526)
T 3t37_A           14 HAPNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGE   51 (526)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSB
T ss_pred             CCCCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCC
Confidence            3458999999999999999999998 578999999954

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.78  E-value=1.4e-05  Score=79.56  Aligned_cols=37  Identities=30%  Similarity=0.579  Sum_probs=33.7

Q ss_pred             CCCeEEEECccHHHHHHHHHHHh---CCCeEEEEecCCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHD---ASFKVVLLESRDRV   63 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~---~G~~V~vlE~~~~~   63 (507)
                      .++||+|||||++||+||+.|++   .|++|+|+|+++..
T Consensus         3 ~m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~   42 (437)
T 3sx6_A            3 GSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF   42 (437)
T ss_dssp             TSCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEE
T ss_pred             CCCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCC
Confidence            36899999999999999999999   79999999998743

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.77  E-value=1.7e-05  Score=77.52  Aligned_cols=35  Identities=23%  Similarity=0.520  Sum_probs=31.1

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCC--CeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~   61 (507)
                      +++||+|||||++|++||..|++.|  .+|+|+|++.
T Consensus         3 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~   39 (384)
T 2v3a_A            3 ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD   39 (384)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            4689999999999999999999998  4699999864

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.76  E-value=0.00019  Score=70.62  Aligned_cols=37  Identities=24%  Similarity=0.522  Sum_probs=33.6

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ...+|+|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus       144 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  180 (408)
T 2gqw_A          144 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL  180 (408)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcc
Confidence            3578999999999999999999999999999997643

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.75  E-value=1.7e-05  Score=80.23  Aligned_cols=39  Identities=18%  Similarity=0.377  Sum_probs=35.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCC---CeEEEEecCCCCCc
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDAS---FKVVLLESRDRVGG   65 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G---~~V~vlE~~~~~GG   65 (507)
                      +++||+|||||++|++||..|++.|   .+|+|+|+++.+|.
T Consensus        34 m~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~   75 (490)
T 2bc0_A           34 WGSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNISF   75 (490)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCCSB
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCCCCc
Confidence            3589999999999999999999988   99999999887653

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.75  E-value=0.0002  Score=72.16  Aligned_cols=43  Identities=9%  Similarity=0.231  Sum_probs=36.3

Q ss_pred             ccCCcccCceeEEEEeeCCc--EEEEEcCC-cEEEcCEEEEecCch
Q 010542          253 KGLDIRLGHRVTKITRHYIG--VKVTVEGG-KTFVADAVVVAVPLG  295 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~--v~v~~~~g-~~~~ad~VI~a~p~~  295 (507)
                      .|++++++++|++|..++++  +.|++.+| +++.+|.||+|++..
T Consensus       239 ~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~  284 (479)
T 2hqm_A          239 EGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRK  284 (479)
T ss_dssp             HTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEE
T ss_pred             CCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCC
Confidence            38999999999999886554  67888899 789999999999853

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.75  E-value=0.00022  Score=72.06  Aligned_cols=45  Identities=18%  Similarity=0.051  Sum_probs=37.2

Q ss_pred             HhccCCcccCceeEEEEeeCCcEEEEEc--CC--cEEEcCEEEEecCch
Q 010542          251 LAKGLDIRLGHRVTKITRHYIGVKVTVE--GG--KTFVADAVVVAVPLG  295 (507)
Q Consensus       251 l~~g~~i~~~~~V~~I~~~~~~v~v~~~--~g--~~~~ad~VI~a~p~~  295 (507)
                      |.++++++++++|++|+.+++++.+++.  +|  +++.+|.||+|++..
T Consensus       225 l~~~V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~  273 (492)
T 3ic9_A          225 FNEEFYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRK  273 (492)
T ss_dssp             HHTTSEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCE
T ss_pred             HhhCcEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCc
Confidence            3434889999999999998888888775  67  689999999999753

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.75  E-value=1.8e-05  Score=81.30  Aligned_cols=38  Identities=39%  Similarity=0.515  Sum_probs=34.2

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ...+|++|||||.+|+++|++|+++|++|+|+|+....
T Consensus         5 ~~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~~   42 (546)
T 1kdg_A            5 ATPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPS   42 (546)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CCceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            35799999999999999999999999999999997643

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.75  E-value=0.00019  Score=72.73  Aligned_cols=36  Identities=28%  Similarity=0.514  Sum_probs=33.0

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ..+++|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  217 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHV  217 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence            468999999999999999999999999999997654

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.75  E-value=1.7e-05  Score=80.34  Aligned_cols=50  Identities=16%  Similarity=0.250  Sum_probs=41.6

Q ss_pred             HHHHHh-ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          247 VINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       247 l~~~l~-~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      +.+.+. .|+++++++.|++|..+++.+.|++.+|+++.+|.||+|++...
T Consensus       232 ~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~p  282 (493)
T 1m6i_A          232 TMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEP  282 (493)
T ss_dssp             HHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEE
T ss_pred             HHHHHHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCc
Confidence            344444 39999999999999987777788889999999999999998643

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.75  E-value=1.9e-05  Score=77.89  Aligned_cols=38  Identities=24%  Similarity=0.429  Sum_probs=34.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC--eEEEEecCCCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF--KVVLLESRDRVG   64 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~~~~G   64 (507)
                      +.+||+|||||++|++||..|++.|+  +|+|+|+++.++
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~   45 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERP   45 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCc
Confidence            56899999999999999999999997  599999987654

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.74  E-value=0.00015  Score=73.08  Aligned_cols=36  Identities=19%  Similarity=0.406  Sum_probs=33.2

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  218 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI  218 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcc
Confidence            478999999999999999999999999999997654

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.71  E-value=0.00021  Score=71.85  Aligned_cols=43  Identities=19%  Similarity=0.294  Sum_probs=38.7

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      .|++++++++|++|+.+++++.+++.+|+++.+|.||+|++..
T Consensus       215 ~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~  257 (472)
T 3iwa_A          215 NDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGVS  257 (472)
T ss_dssp             TTCEEECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCEE
T ss_pred             cCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCCC
Confidence            4899999999999998788888888899899999999999864

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.70  E-value=2.7e-05  Score=78.77  Aligned_cols=38  Identities=16%  Similarity=0.531  Sum_probs=34.5

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      .+++++|+|||||.+|+++|..|++.+++|+|+|+++.
T Consensus        39 ~~~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~   76 (502)
T 4g6h_A           39 HSDKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY   76 (502)
T ss_dssp             SCSSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE
T ss_pred             CCCCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC
Confidence            45678999999999999999999999999999999763

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.69  E-value=0.00023  Score=72.48  Aligned_cols=43  Identities=26%  Similarity=0.371  Sum_probs=37.0

Q ss_pred             ccCCcccCceeEEEEeeCCc----EEEEEcCCc-EEEcCEEEEecCch
Q 010542          253 KGLDIRLGHRVTKITRHYIG----VKVTVEGGK-TFVADAVVVAVPLG  295 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~----v~v~~~~g~-~~~ad~VI~a~p~~  295 (507)
                      .|++++++++|++|..++++    +.|++.+|+ ++.+|.||+|++..
T Consensus       268 ~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~  315 (523)
T 1mo9_A          268 QGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQ  315 (523)
T ss_dssp             TTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCE
T ss_pred             CCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCc
Confidence            48999999999999986655    678888887 89999999999754

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.69  E-value=0.00029  Score=71.38  Aligned_cols=43  Identities=16%  Similarity=0.171  Sum_probs=36.7

Q ss_pred             ccCCcccCceeEEEEeeCC-cEEEEEcCCcE-EEcCEEEEecCch
Q 010542          253 KGLDIRLGHRVTKITRHYI-GVKVTVEGGKT-FVADAVVVAVPLG  295 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~-~v~v~~~~g~~-~~ad~VI~a~p~~  295 (507)
                      +|++++++++|++|+.+++ .+.|++.+|++ +.+|.||+|++..
T Consensus       230 ~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~  274 (500)
T 1onf_A          230 NNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRS  274 (500)
T ss_dssp             TTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBC
T ss_pred             CCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCC
Confidence            4899999999999988654 47788889987 9999999999754

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.68  E-value=0.00026  Score=71.17  Aligned_cols=36  Identities=28%  Similarity=0.390  Sum_probs=33.1

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  213 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHV  213 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCcc
Confidence            478999999999999999999999999999997654

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.67  E-value=0.00017  Score=72.78  Aligned_cols=43  Identities=28%  Similarity=0.241  Sum_probs=36.8

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcC----CcEEEcCEEEEecCch
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEG----GKTFVADAVVVAVPLG  295 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~----g~~~~ad~VI~a~p~~  295 (507)
                      +|++++++++|++|+.+++++.|++.+    |+++.+|.||+|++..
T Consensus       239 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~  285 (482)
T 1ojt_A          239 RFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRA  285 (482)
T ss_dssp             GEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEE
T ss_pred             cCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCC
Confidence            488999999999999887777777776    7788999999999754

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.66  E-value=3.1e-05  Score=75.12  Aligned_cols=35  Identities=20%  Similarity=0.442  Sum_probs=31.7

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ..||+|||||++|++||..|++.| +|+|+|+++..
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~   42 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVP   42 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCC
Confidence            479999999999999999999999 99999997653

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.66  E-value=0.00036  Score=70.02  Aligned_cols=43  Identities=28%  Similarity=0.351  Sum_probs=36.1

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEc-CC--cEEEcCEEEEecCch
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVE-GG--KTFVADAVVVAVPLG  295 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~-~g--~~~~ad~VI~a~p~~  295 (507)
                      .|++++++++|++|+.+++++.+++. +|  +++.+|.||+|++..
T Consensus       225 ~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~  270 (464)
T 2a8x_A          225 LGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFA  270 (464)
T ss_dssp             HTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEE
T ss_pred             cCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCC
Confidence            38999999999999987777777765 56  578999999999754

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=97.66  E-value=3.5e-05  Score=79.02  Aligned_cols=36  Identities=28%  Similarity=0.572  Sum_probs=33.1

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhC-CCeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~-G~~V~vlE~~~   61 (507)
                      .+.+|+||||||.+|+++|.+|++. |.+|+|||+..
T Consensus        17 ~~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           17 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            4579999999999999999999986 78999999976

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.66  E-value=0.00032  Score=70.10  Aligned_cols=35  Identities=26%  Similarity=0.603  Sum_probs=32.3

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ..+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  183 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHER  183 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCc
Confidence            46899999999999999999999999999998654

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.65  E-value=3.1e-05  Score=78.50  Aligned_cols=39  Identities=23%  Similarity=0.329  Sum_probs=35.0

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG   64 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~G   64 (507)
                      ...+|++|||||.+|+++|++|++.|++|+|+|+....+
T Consensus         3 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~   41 (504)
T 1n4w_A            3 GGYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN   41 (504)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            356899999999999999999999999999999987654

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.65  E-value=0.00038  Score=69.92  Aligned_cols=44  Identities=23%  Similarity=0.245  Sum_probs=35.5

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEc--CC--cEEEcCEEEEecCchh
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVE--GG--KTFVADAVVVAVPLGV  296 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~--~g--~~~~ad~VI~a~p~~~  296 (507)
                      .|++++++++|++|+.+++++.+++.  +|  +++.+|.||+|++...
T Consensus       229 ~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p  276 (468)
T 2qae_A          229 EKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRP  276 (468)
T ss_dssp             TCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEE
T ss_pred             CCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCccc
Confidence            48999999999999988777777765  66  5789999999998643

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.64  E-value=0.00015  Score=72.57  Aligned_cols=36  Identities=25%  Similarity=0.530  Sum_probs=33.0

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ..+|+|||||.+|+.+|..|++.|.+|+|+|+.+++
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  206 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI  206 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcc
Confidence            478999999999999999999999999999997643

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.64  E-value=0.00034  Score=70.72  Aligned_cols=36  Identities=22%  Similarity=0.286  Sum_probs=32.8

Q ss_pred             CCeEEEECccHHHHHHHHHHHhC---CCeEEEEecCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDA---SFKVVLLESRDRV   63 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~---G~~V~vlE~~~~~   63 (507)
                      ..+++|||||..|+-.|..|++.   |.+|+|+|+.+++
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~  229 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLI  229 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcc
Confidence            46899999999999999999999   9999999987653

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.64  E-value=0.00029  Score=71.15  Aligned_cols=36  Identities=17%  Similarity=0.215  Sum_probs=32.9

Q ss_pred             CCeEEEECccHHHHHHHHHHHhC---CCeEEEEecCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDA---SFKVVLLESRDRV   63 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~---G~~V~vlE~~~~~   63 (507)
                      ..+++|||||..|+-.|..|++.   |.+|+|+|+.+++
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~  225 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI  225 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCc
Confidence            46899999999999999999998   9999999997653

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.57  E-value=0.0004  Score=70.16  Aligned_cols=35  Identities=29%  Similarity=0.355  Sum_probs=30.4

Q ss_pred             CCeEEEECccHHHHHHHHHHHh----CCCeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHD----ASFKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~----~G~~V~vlE~~~~   62 (507)
                      ..+|+|||||..|+-+|..|++    .|.+|+++++.++
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~  218 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG  218 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcc
Confidence            4789999999999999999987    4788999998654

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.56  E-value=0.00061  Score=70.20  Aligned_cols=35  Identities=31%  Similarity=0.536  Sum_probs=32.1

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ..+|+|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus       151 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  185 (565)
T 3ntd_A          151 VEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQ  185 (565)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCc
Confidence            46899999999999999999999999999999653

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.55  E-value=0.00035  Score=70.17  Aligned_cols=37  Identities=22%  Similarity=0.355  Sum_probs=33.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ...+|+|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus       176 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  212 (470)
T 1dxl_A          176 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI  212 (470)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcc
Confidence            3478999999999999999999999999999997643

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.54  E-value=0.00054  Score=69.19  Aligned_cols=36  Identities=36%  Similarity=0.495  Sum_probs=33.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ...+|+|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus       193 ~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  228 (490)
T 2bc0_A          193 DIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDT  228 (490)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccc
Confidence            457899999999999999999999999999999764

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=97.52  E-value=5.8e-05  Score=74.96  Aligned_cols=35  Identities=34%  Similarity=0.621  Sum_probs=31.3

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCC--CeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~~   62 (507)
                      .++|+|||||.+|++||..|++.+  ++|+|+|+++.
T Consensus         2 ~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~   38 (430)
T 3hyw_A            2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPY   38 (430)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSE
T ss_pred             CCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCC
Confidence            458999999999999999999865  79999999874

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.52  E-value=5.5e-05  Score=75.26  Aligned_cols=46  Identities=22%  Similarity=0.395  Sum_probs=36.0

Q ss_pred             HHHHHHHh-ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCc
Q 010542          245 LPVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL  294 (507)
Q Consensus       245 ~~l~~~l~-~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~  294 (507)
                      +.+.+.+. +|++++++++|++++.  +  .+++++|+++.+|.||+|++.
T Consensus       192 ~~~~~~l~~~gV~i~~~~~v~~~~~--~--~v~~~~g~~~~~D~vl~a~G~  238 (437)
T 4eqs_A          192 QPILDELDKREIPYRLNEEINAING--N--EITFKSGKVEHYDMIIEGVGT  238 (437)
T ss_dssp             HHHHHHHHHTTCCEEESCCEEEEET--T--EEEETTSCEEECSEEEECCCE
T ss_pred             HHHHHHhhccceEEEeccEEEEecC--C--eeeecCCeEEeeeeEEEEece
Confidence            44555555 4999999999998753  3  366789999999999999974

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.48  E-value=0.00069  Score=68.86  Aligned_cols=34  Identities=15%  Similarity=0.261  Sum_probs=31.0

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ..+++|||||..|+-.|..+++.|.+|+|+++..
T Consensus       223 P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~  256 (542)
T 4b1b_A          223 PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSI  256 (542)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSC
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCeEEEecccc
Confidence            4679999999999999999999999999998743

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.47  E-value=0.00097  Score=67.07  Aligned_cols=43  Identities=35%  Similarity=0.361  Sum_probs=36.8

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCC---cEEEcCEEEEecCch
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAVPLG  295 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g---~~~~ad~VI~a~p~~  295 (507)
                      .|++++++++|++|+.+++++.+++.++   +++.+|.||+|++..
T Consensus       234 ~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~  279 (476)
T 3lad_A          234 QGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRR  279 (476)
T ss_dssp             TTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEE
T ss_pred             CCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCc
Confidence            3889999999999999888888777755   578999999999854

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=97.46  E-value=6.7e-05  Score=73.76  Aligned_cols=42  Identities=17%  Similarity=0.192  Sum_probs=37.0

Q ss_pred             cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542          254 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       254 g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      |+++++++.|+.++.+++...+++.+|+++.+|.||+++|..
T Consensus       216 gi~v~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vi~~~g~~  257 (401)
T 3vrd_B          216 LIEWHPGPDAAVVKTDTEAMTVETSFGETFKAAVINLIPPQR  257 (401)
T ss_dssp             SEEEECTTTTCEEEEETTTTEEEETTSCEEECSEEEECCCEE
T ss_pred             CcEEEeCceEEEEEecccceEEEcCCCcEEEeeEEEEecCcC
Confidence            778999999999998888888899999999999999987643

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.45  E-value=0.00061  Score=68.60  Aligned_cols=36  Identities=28%  Similarity=0.489  Sum_probs=33.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ...+|+|||||.+|+.+|..|++.|.+|+|+|+.++
T Consensus       185 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  220 (480)
T 3cgb_A          185 KVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDH  220 (480)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGG
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCc
Confidence            457899999999999999999999999999998654

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.44  E-value=0.00081  Score=67.90  Aligned_cols=43  Identities=37%  Similarity=0.526  Sum_probs=36.0

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcC---C--cEEEcCEEEEecCch
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEG---G--KTFVADAVVVAVPLG  295 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~---g--~~~~ad~VI~a~p~~  295 (507)
                      .|++++++++|++|..+++++.+++.+   |  +++.+|.||+|++..
T Consensus       252 ~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~  299 (491)
T 3urh_A          252 QGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRK  299 (491)
T ss_dssp             TTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCE
T ss_pred             CCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCc
Confidence            389999999999999988887776653   5  578999999999854

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.43  E-value=0.0016  Score=65.08  Aligned_cols=44  Identities=20%  Similarity=0.230  Sum_probs=37.4

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEc---CCc--EEEcCEEEEecCchh
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVE---GGK--TFVADAVVVAVPLGV  296 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~---~g~--~~~ad~VI~a~p~~~  296 (507)
                      .|+++++++.|++|..+++++.|++.   +|+  ++.+|.||+|++...
T Consensus       329 ~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p  377 (463)
T 3s5w_A          329 PRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYER  377 (463)
T ss_dssp             CCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCEEC
T ss_pred             CCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCCC
Confidence            38899999999999998888888776   675  489999999998653

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.43  E-value=0.0011  Score=66.52  Aligned_cols=43  Identities=14%  Similarity=0.146  Sum_probs=36.0

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      .|++++++++|++|+.+++.+.|++. +.++.+|.||+|++...
T Consensus       229 ~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p  271 (467)
T 1zk7_A          229 EGIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTP  271 (467)
T ss_dssp             TTCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEE
T ss_pred             CCCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCc
Confidence            48999999999999987777777776 45899999999998643

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.43  E-value=9.5e-05  Score=74.97  Aligned_cols=37  Identities=27%  Similarity=0.397  Sum_probs=34.1

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ...+|++|||||.+|+++|++|++.|.+|+|+|+...
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   45 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   45 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            4569999999999999999999999999999999754

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.42  E-value=0.0024  Score=65.11  Aligned_cols=37  Identities=19%  Similarity=0.220  Sum_probs=33.9

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ....+|+|||+|.+|+-+|..|++.|.+|+|++++++
T Consensus       176 ~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          176 LAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             cccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            4568899999999999999999999999999999764

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.39  E-value=7.2e-05  Score=76.50  Aligned_cols=36  Identities=31%  Similarity=0.403  Sum_probs=32.9

Q ss_pred             CCeEEEECccHHHHHHHHHHHh-CCCeEEEEecCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHD-ASFKVVLLESRDRV   63 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~-~G~~V~vlE~~~~~   63 (507)
                      .+|+||||||.+|+++|.+|++ .|.+|+|||+....
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            5899999999999999999998 58999999997654

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.39  E-value=0.0012  Score=66.21  Aligned_cols=42  Identities=26%  Similarity=0.328  Sum_probs=36.3

Q ss_pred             ccCCcccCceeEEEEeeCCc-EEEE-EcCCcEEEcCEEEEecCch
Q 010542          253 KGLDIRLGHRVTKITRHYIG-VKVT-VEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~-v~v~-~~~g~~~~ad~VI~a~p~~  295 (507)
                      .|++++++++|++|..++++ +.|+ +.+|+ +.+|.||+|++..
T Consensus       224 ~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~  267 (463)
T 4dna_A          224 KGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRM  267 (463)
T ss_dssp             TTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEE
T ss_pred             CCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcc
Confidence            48999999999999987665 6788 88896 9999999999753

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.35  E-value=0.00012  Score=74.99  Aligned_cols=37  Identities=35%  Similarity=0.476  Sum_probs=34.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhC-CCeEEEEecCCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRDRV   63 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~-G~~V~vlE~~~~~   63 (507)
                      +.+|++|||||.+|+++|++|+++ |.+|+|+|+....
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~   49 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD   49 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence            469999999999999999999998 8999999997654

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.34  E-value=0.00013  Score=75.25  Aligned_cols=37  Identities=24%  Similarity=0.449  Sum_probs=33.7

Q ss_pred             CCCeEEEECccHHHHHHHHHHHh-CCCeEEEEecCCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHD-ASFKVVLLESRDRV   63 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~-~G~~V~vlE~~~~~   63 (507)
                      ..+|++|||||.+|+++|++|++ .|++|+|+|+....
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            56999999999999999999999 79999999997543

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.29  E-value=0.0012  Score=65.72  Aligned_cols=36  Identities=25%  Similarity=0.505  Sum_probs=32.8

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ...+|+|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus       147 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  182 (449)
T 3kd9_A          147 KVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGER  182 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCc
Confidence            346899999999999999999999999999999664

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.28  E-value=0.0016  Score=67.41  Aligned_cols=35  Identities=29%  Similarity=0.515  Sum_probs=32.2

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ..+|+|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus       187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  221 (588)
T 3ics_A          187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQ  221 (588)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCc
Confidence            46899999999999999999999999999998654

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.26  E-value=0.0022  Score=64.29  Aligned_cols=41  Identities=22%  Similarity=0.326  Sum_probs=35.4

Q ss_pred             CCcccCceeEEEEeeC-CcEEEEEc--CCc--EEEcCEEEEecCch
Q 010542          255 LDIRLGHRVTKITRHY-IGVKVTVE--GGK--TFVADAVVVAVPLG  295 (507)
Q Consensus       255 ~~i~~~~~V~~I~~~~-~~v~v~~~--~g~--~~~ad~VI~a~p~~  295 (507)
                      ++++++++|++|..++ +++.+++.  +|+  ++.+|.||+|++..
T Consensus       226 v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~  271 (466)
T 3l8k_A          226 LNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRR  271 (466)
T ss_dssp             CCEECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCCEE
T ss_pred             EEEEECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCCC
Confidence            8899999999999887 78888877  676  79999999999854

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.25  E-value=0.0021  Score=64.68  Aligned_cols=35  Identities=26%  Similarity=0.376  Sum_probs=32.3

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ..+|+|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  221 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK  221 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCc
Confidence            47899999999999999999999999999998654

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.21  E-value=0.0024  Score=65.20  Aligned_cols=36  Identities=19%  Similarity=0.294  Sum_probs=33.4

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ...+|+|||+|.+|+-.|..|++.+.+|+|++++++
T Consensus       184 ~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~  219 (545)
T 3uox_A          184 TGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN  219 (545)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred             CCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence            467899999999999999999999999999999764

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.20  E-value=0.0019  Score=64.00  Aligned_cols=36  Identities=22%  Similarity=0.466  Sum_probs=33.2

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ..+++|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l  182 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKI  182 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCC
T ss_pred             CcEEEEECCccchhhhHHHHHhcCCcceeeeeeccc
Confidence            468999999999999999999999999999997764

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.18  E-value=0.0027  Score=59.91  Aligned_cols=35  Identities=37%  Similarity=0.496  Sum_probs=32.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ...+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus       144 ~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~  178 (320)
T 1trb_A          144 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD  178 (320)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCC
Confidence            35789999999999999999999999999999865

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.18  E-value=0.0031  Score=63.45  Aligned_cols=32  Identities=22%  Similarity=0.435  Sum_probs=30.3

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEec
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLES   59 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~   59 (507)
                      ..+++|||||..|+-.|..|++.|.+|+|+++
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~  218 (483)
T 3dgh_A          187 PGKTLVVGAGYIGLECAGFLKGLGYEPTVMVR  218 (483)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCEEEEEeC
Confidence            46899999999999999999999999999987

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.14  E-value=0.002  Score=61.30  Aligned_cols=36  Identities=31%  Similarity=0.433  Sum_probs=32.4

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ...+|+|||+|.+|+-+|..|++.|.+|+++++.++
T Consensus       172 ~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~  207 (338)
T 3itj_A          172 RNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDH  207 (338)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCc
Confidence            457899999999999999999999999999998553

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.11  E-value=0.0029  Score=64.57  Aligned_cols=37  Identities=16%  Similarity=0.319  Sum_probs=33.8

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ....+|+|||+|.+|+-+|..|++.|.+|+|++++++
T Consensus       189 ~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          189 FTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN  225 (549)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             cCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            3567899999999999999999999999999999764

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.01  E-value=0.004  Score=59.13  Aligned_cols=35  Identities=26%  Similarity=0.451  Sum_probs=32.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ...+|+|||+|.+|+-.|..|++.|.+|+++++.+
T Consensus       151 ~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~  185 (335)
T 2zbw_A          151 QGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRP  185 (335)
T ss_dssp             TTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCC
Confidence            35789999999999999999999999999999865

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=96.94  E-value=0.0056  Score=61.62  Aligned_cols=33  Identities=15%  Similarity=0.279  Sum_probs=30.5

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ..+++|||||..|+-.|..|++.|.+|+|+|+.
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~  217 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRS  217 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcC
Confidence            457999999999999999999999999999974

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=96.78  E-value=0.0064  Score=58.47  Aligned_cols=35  Identities=17%  Similarity=0.303  Sum_probs=32.0

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ..+|+|||+|.+|+-.|..|++.|.+|+++++.+.
T Consensus       163 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~  197 (360)
T 3ab1_A          163 GKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHE  197 (360)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCC
Confidence            56899999999999999999999999999998653

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=96.62  E-value=0.0082  Score=56.76  Aligned_cols=34  Identities=26%  Similarity=0.380  Sum_probs=31.4

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus       154 ~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~  187 (332)
T 3lzw_A          154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRD  187 (332)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSS
T ss_pred             CCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecC
Confidence            5789999999999999999999999999999854

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=96.46  E-value=0.019  Score=58.13  Aligned_cols=33  Identities=18%  Similarity=0.310  Sum_probs=30.3

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ..+++|||||..|+-.|..|++.|.+|+|+|+.
T Consensus       210 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~  242 (519)
T 3qfa_A          210 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS  242 (519)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence            346999999999999999999999999999973

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=96.42  E-value=0.0074  Score=63.58  Aligned_cols=38  Identities=18%  Similarity=0.260  Sum_probs=33.5

Q ss_pred             CCCCeEEEEC--ccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           26 ARSPSVIVIG--AGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        26 ~~~~dv~IIG--aGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ....+|+|||  +|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       521 ~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l  560 (690)
T 3k30_A          521 PDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQV  560 (690)
T ss_dssp             CSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccccc
Confidence            3456799999  9999999999999999999999986654

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=96.37  E-value=0.0089  Score=60.28  Aligned_cols=42  Identities=21%  Similarity=0.261  Sum_probs=31.4

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCCc----EEEcCEEEEecCc
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGGK----TFVADAVVVAVPL  294 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~----~~~ad~VI~a~p~  294 (507)
                      .|++|++|+.|++|+.++....+...+|+    ++.||.||.|++.
T Consensus       285 ~GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv  330 (502)
T 4g6h_A          285 TSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGN  330 (502)
T ss_dssp             TTCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCE
T ss_pred             cceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCC
Confidence            39999999999998754333334555663    6899999999974

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.35  E-value=0.0043  Score=50.39  Aligned_cols=34  Identities=24%  Similarity=0.478  Sum_probs=30.9

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      .++|+|||+|..|...|..|.+.|++|+++|++.
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            4689999999999999999999999999999853

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=96.30  E-value=0.0039  Score=58.60  Aligned_cols=35  Identities=29%  Similarity=0.417  Sum_probs=32.3

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.++
T Consensus       145 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  179 (312)
T 4gcm_A          145 NKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDE  179 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccc
Confidence            46899999999999999999999999999998664

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=96.27  E-value=0.0028  Score=61.62  Aligned_cols=36  Identities=19%  Similarity=0.284  Sum_probs=33.3

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ..+|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus       146 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~  181 (385)
T 3klj_A          146 KGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYP  181 (385)
T ss_dssp             HSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCcc
Confidence            467999999999999999999999999999998765

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.26  E-value=0.0066  Score=49.52  Aligned_cols=37  Identities=16%  Similarity=0.307  Sum_probs=33.3

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ...+.+|+|||+|-.|...|..|.+.|++|+++|++.
T Consensus         4 ~~~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            4 VDICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             CCCCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            3456679999999999999999999999999999964

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.19  E-value=0.0063  Score=50.62  Aligned_cols=36  Identities=19%  Similarity=0.420  Sum_probs=32.6

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ....+|+|||+|..|+..|..|.+.|++|++++++.
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            345789999999999999999999999999999864

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.10  E-value=0.0064  Score=47.62  Aligned_cols=35  Identities=26%  Similarity=0.339  Sum_probs=31.6

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCC-CeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~~   61 (507)
                      ++++|+|+|+|..|...+..|.+.| ++|.+++++.
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            4568999999999999999999999 8999999853

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.02  E-value=0.0071  Score=49.30  Aligned_cols=34  Identities=35%  Similarity=0.441  Sum_probs=31.6

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +.+|+|+|+|-.|...|..|.++|++|+++|++.
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4679999999999999999999999999999864

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.94  E-value=0.007  Score=58.40  Aligned_cols=35  Identities=29%  Similarity=0.504  Sum_probs=32.7

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      .+|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  178 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF  178 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCee
Confidence            68999999999999999999999999999997754

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=95.80  E-value=0.009  Score=56.07  Aligned_cols=35  Identities=34%  Similarity=0.526  Sum_probs=31.8

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ...+|+|||||..|+-+|..|++.|.+|+|+|+..
T Consensus       151 ~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~  185 (314)
T 4a5l_A          151 RNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRD  185 (314)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             CCCeEEEECCChHHHHHHHHHHHhCCeeeeecccc
Confidence            35789999999999999999999999999999743

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=95.77  E-value=0.0078  Score=58.84  Aligned_cols=50  Identities=20%  Similarity=0.236  Sum_probs=35.6

Q ss_pred             cccccccchhhhcccCCCCCCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542            6 RSNRQLRRALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      -++|...++..++      .+.+.+|+|||.|..||..|..|+++|++|+.+|-+.
T Consensus         5 ~~~~~~~~~~~p~------~~~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A            5 HHHHHHSSGLVPR------GSHMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             --------CCCCT------TCCCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             cccccccCCcCCC------CCCCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            3566655555542      2457899999999999999999999999999999753

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=95.73  E-value=0.012  Score=55.13  Aligned_cols=33  Identities=30%  Similarity=0.492  Sum_probs=30.8

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ..+|+|||+|..|.+.|..|+++|++|++++++
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~   47 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQT   47 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            467999999999999999999999999999984

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.63  E-value=0.0094  Score=59.01  Aligned_cols=36  Identities=17%  Similarity=0.387  Sum_probs=32.7

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      .++|+|||.|.+|+++|..|+++|++|+++|.....
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~   40 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSC
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCc
Confidence            467999999999999999999999999999997654

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.56  E-value=0.012  Score=58.58  Aligned_cols=35  Identities=29%  Similarity=0.379  Sum_probs=32.4

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +..+|+|||.|.+|+++|..|+++|++|++.|.+.
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            45789999999999999999999999999999854

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=95.55  E-value=0.015  Score=53.76  Aligned_cols=34  Identities=24%  Similarity=0.286  Sum_probs=31.4

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ..+|+|||+|..|...|..|+++|++|++++++.
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            4689999999999999999999999999999853

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.51  E-value=0.018  Score=47.71  Aligned_cols=33  Identities=15%  Similarity=0.252  Sum_probs=31.0

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ..+|+|+|+|-.|...|..|.+.|++|+++|++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            467999999999999999999999999999986

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.34  E-value=0.016  Score=54.61  Aligned_cols=34  Identities=26%  Similarity=0.379  Sum_probs=31.2

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +++|+|||+|..|.+.|..|++.|++|+++.++.
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            2 SLNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             -CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            4789999999999999999999999999999864

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=95.34  E-value=0.015  Score=47.31  Aligned_cols=33  Identities=24%  Similarity=0.396  Sum_probs=30.5

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      +.+|+|+|+|..|...|..|.+.|++|++++++
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~   38 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   38 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            456999999999999999999999999999985

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=95.32  E-value=0.016  Score=54.22  Aligned_cols=35  Identities=23%  Similarity=0.470  Sum_probs=31.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ...+|+|||||..|..-|..++.+|++|+|+|.+.
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            34689999999999999999999999999999854

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=95.27  E-value=0.026  Score=55.53  Aligned_cols=37  Identities=27%  Similarity=0.334  Sum_probs=33.2

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      .+..+|+|||+|..|...|..|+++|++|+++|.+..
T Consensus        52 ~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           52 YDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            3457899999999999999999999999999998654

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.15  E-value=0.021  Score=48.88  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=31.8

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhC-CCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~-G~~V~vlE~~~   61 (507)
                      ...+|+|||+|..|...|..|.+. |++|+++|++.
T Consensus        38 ~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           38 GHAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             TTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            356799999999999999999999 99999999864

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.10  E-value=0.02  Score=56.57  Aligned_cols=33  Identities=18%  Similarity=0.400  Sum_probs=31.1

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ++|+|||+|..|+..|..|+++|++|++++.+.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            689999999999999999999999999999853

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=95.03  E-value=0.017  Score=54.33  Aligned_cols=34  Identities=29%  Similarity=0.407  Sum_probs=30.4

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +++|+|||+|..|.+.|..|+++|++|+++.++.
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            2 SLRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             --CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            3689999999999999999999999999999864

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=95.02  E-value=0.022  Score=53.46  Aligned_cols=33  Identities=24%  Similarity=0.400  Sum_probs=30.4

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      +++|+|||+|..|.+.|..|++.|++|++++++
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~   35 (316)
T 2ew2_A            3 AMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQW   35 (316)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCcEEEEECC
Confidence            468999999999999999999999999999885

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=94.99  E-value=0.022  Score=54.69  Aligned_cols=36  Identities=25%  Similarity=0.314  Sum_probs=30.9

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ...+|+|||+|.+|+-+|..|++.|.+|+++|+.++
T Consensus       165 ~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~  200 (369)
T 3d1c_A          165 NKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTG  200 (369)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC---
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCC
Confidence            346899999999999999999999999999998654

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=94.98  E-value=0.021  Score=50.50  Aligned_cols=33  Identities=24%  Similarity=0.409  Sum_probs=30.7

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ++|+|||+|-.|...|..|.++|++|+++|++.
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999854

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=94.98  E-value=0.026  Score=52.73  Aligned_cols=36  Identities=33%  Similarity=0.439  Sum_probs=32.6

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ...+|+|||+|.+|+-.|..|++.|.+|+++++.++
T Consensus       142 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  177 (311)
T 2q0l_A          142 KNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDG  177 (311)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence            357899999999999999999999999999998653

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=94.98  E-value=0.024  Score=56.27  Aligned_cols=37  Identities=30%  Similarity=0.474  Sum_probs=33.7

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhC-CC-eEEEEecCCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDA-SF-KVVLLESRDR   62 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~-G~-~V~vlE~~~~   62 (507)
                      .+.++|+|||+|..|+..|..|+++ |+ +|++++.+..
T Consensus        16 ~~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           16 GPIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CSCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            3557899999999999999999999 99 9999998765

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=94.95  E-value=0.023  Score=56.62  Aligned_cols=34  Identities=26%  Similarity=0.450  Sum_probs=31.7

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ..++|+|||+|..|+..|..|+++|++|++++.+
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~   40 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIGHDVFCLDVD   40 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCCCEEEEEECC
Confidence            3589999999999999999999999999999984

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=94.93  E-value=0.03  Score=49.08  Aligned_cols=37  Identities=22%  Similarity=0.340  Sum_probs=31.9

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ...++|+|||+|..|.+.|..|++.|++|++++++..
T Consensus        17 ~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           17 FQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             ---CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4567899999999999999999999999999998754

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=94.92  E-value=0.026  Score=53.17  Aligned_cols=36  Identities=28%  Similarity=0.398  Sum_probs=31.5

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCC--eEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASF--KVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~~   61 (507)
                      .+.++|+|||+|-.|.+.|+.|++.|+  +|++++++.
T Consensus         5 ~~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            5 VKPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            345799999999999999999999998  999999853

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=94.89  E-value=0.026  Score=53.15  Aligned_cols=35  Identities=26%  Similarity=0.414  Sum_probs=32.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~   61 (507)
                      +.++|+|||+|..|.+.|..|++.|+ +|++++.+.
T Consensus         3 ~~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            3 ERRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            45789999999999999999999998 999999864

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=94.81  E-value=0.031  Score=52.38  Aligned_cols=36  Identities=25%  Similarity=0.310  Sum_probs=32.9

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ..+++|.|||.|..|...|..|++.|++|++++++.
T Consensus        19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~   54 (310)
T 3doj_A           19 SHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTL   54 (310)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            456799999999999999999999999999999864

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=94.79  E-value=0.023  Score=51.79  Aligned_cols=35  Identities=20%  Similarity=0.384  Sum_probs=32.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +.+.|+|||||-.|+..|..|.+.|.+|+|++...
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            46889999999999999999999999999999753

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=94.79  E-value=0.031  Score=51.70  Aligned_cols=33  Identities=21%  Similarity=0.155  Sum_probs=30.8

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ++|+|||+|..|.+.|..|+++|++|++++++.
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   33 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVP   33 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCc
Confidence            379999999999999999999999999999865

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=94.72  E-value=0.03  Score=52.33  Aligned_cols=35  Identities=40%  Similarity=0.418  Sum_probs=32.2

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++.++
T Consensus       144 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  178 (310)
T 1fl2_A          144 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE  178 (310)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcc
Confidence            46899999999999999999999999999998664

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=94.72  E-value=0.037  Score=52.08  Aligned_cols=35  Identities=23%  Similarity=0.469  Sum_probs=31.7

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~   61 (507)
                      ..++|+|||||..|.+.|+.|+..|+ +|.++|.+.
T Consensus         3 ~~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            3 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            35789999999999999999999998 999999754

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=94.71  E-value=0.035  Score=52.48  Aligned_cols=35  Identities=29%  Similarity=0.358  Sum_probs=31.9

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~   61 (507)
                      +.++|+|||||-.|.+.|..|++.|+ +|+++|.+.
T Consensus         8 ~~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A            8 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            35789999999999999999999998 999999864

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=94.70  E-value=0.033  Score=51.48  Aligned_cols=34  Identities=35%  Similarity=0.511  Sum_probs=30.8

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ..++|+|||+|..|...|..|+ +|++|++++++.
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            4688999999999999999999 999999999854

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=94.67  E-value=0.037  Score=54.27  Aligned_cols=37  Identities=38%  Similarity=0.519  Sum_probs=34.1

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG   64 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~G   64 (507)
                      ..+|+|||+|..|+-+|..|++.|.+|+|+|+.+++-
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l  188 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVL  188 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchh
Confidence            5789999999999999999999999999999987653

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=94.62  E-value=0.04  Score=52.01  Aligned_cols=35  Identities=23%  Similarity=0.369  Sum_probs=31.9

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~   61 (507)
                      +..+|+|||||..|.+.|+.|++.|+ +|.++|.+.
T Consensus        13 ~~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           13 MRKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            34689999999999999999999998 999999864

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=94.60  E-value=0.035  Score=52.49  Aligned_cols=37  Identities=30%  Similarity=0.433  Sum_probs=33.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ...+|+|||+|.+|+-+|..|++.|.+|+|+++.+++
T Consensus       158 ~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~  194 (333)
T 1vdc_A          158 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF  194 (333)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcC
Confidence            4578999999999999999999999999999997643

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=94.57  E-value=0.034  Score=53.27  Aligned_cols=33  Identities=27%  Similarity=0.230  Sum_probs=30.8

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      +++|+|||+|..|...|..|++.|++|++++++
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~   36 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDID   36 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            468999999999999999999999999999875

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=94.57  E-value=0.021  Score=53.09  Aligned_cols=34  Identities=29%  Similarity=0.390  Sum_probs=31.0

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +++|+|||+|..|.+.|..|++.|++|+++.++.
T Consensus         2 ~mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            2 SLSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            4689999999999999999999999999999863

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=94.54  E-value=0.033  Score=52.90  Aligned_cols=33  Identities=21%  Similarity=0.238  Sum_probs=30.8

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      .++|+|||+|..|.+.|..|+++|++|+++.+.
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            468999999999999999999999999999974

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.53  E-value=0.038  Score=52.15  Aligned_cols=34  Identities=21%  Similarity=0.248  Sum_probs=30.6

Q ss_pred             CCeEEEECccHHHHH-HHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVA-AARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~-aA~~L~~~G~~V~vlE~~~   61 (507)
                      +++|.|||.|-+|++ +|..|.++|++|++.|++.
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~   38 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM   38 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            468999999999997 7888999999999999865

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=94.51  E-value=0.039  Score=52.30  Aligned_cols=36  Identities=31%  Similarity=0.439  Sum_probs=32.8

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ...+|+|||+|.+|+-.|..|++.|.+|+++++.++
T Consensus       154 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~  189 (335)
T 2a87_A          154 RDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDE  189 (335)
T ss_dssp             TTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCc
Confidence            357899999999999999999999999999998654

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=94.51  E-value=0.039  Score=51.97  Aligned_cols=35  Identities=31%  Similarity=0.424  Sum_probs=32.2

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus       152 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  186 (325)
T 2q7v_A          152 GKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDT  186 (325)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCc
Confidence            47899999999999999999999999999998653

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=94.50  E-value=0.029  Score=52.22  Aligned_cols=36  Identities=19%  Similarity=0.175  Sum_probs=32.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ++++|.|||.|..|...|..|++.|++|++++++..
T Consensus        14 ~~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           14 EQLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             -CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            457899999999999999999999999999998653

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=94.49  E-value=0.043  Score=51.50  Aligned_cols=36  Identities=25%  Similarity=0.368  Sum_probs=32.1

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~   61 (507)
                      .+..+|+|||||..|.+.|+.|+..|+ +|.++|.+.
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~   41 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE   41 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            456799999999999999999999998 999999864

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=94.43  E-value=0.038  Score=53.91  Aligned_cols=35  Identities=17%  Similarity=0.332  Sum_probs=31.0

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ...++|+|||+|..|+..|..|++ |++|++++.+.
T Consensus        34 ~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~   68 (432)
T 3pid_A           34 SEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQ   68 (432)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCH
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCH
Confidence            446789999999999999999998 99999999853

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=94.37  E-value=0.037  Score=55.13  Aligned_cols=37  Identities=11%  Similarity=0.145  Sum_probs=33.5

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ...+|+|||+|.+|+-.|..|++.|.+|+|+++.+.+
T Consensus       196 ~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~  232 (464)
T 2xve_A          196 KDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAP  232 (464)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCC
Confidence            4578999999999999999999999999999987653

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=94.36  E-value=0.047  Score=54.28  Aligned_cols=35  Identities=31%  Similarity=0.350  Sum_probs=31.9

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ...+|+|||+|..|...|..|+++|++|+++|.+.
T Consensus        36 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           36 PVSSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            35689999999999999999999999999999853

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=94.36  E-value=0.043  Score=51.22  Aligned_cols=35  Identities=23%  Similarity=0.228  Sum_probs=31.6

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ++++|.|||.|..|...|..|++.|++|++++++.
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            45789999999999999999999999999998853

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=94.35  E-value=0.042  Score=51.38  Aligned_cols=33  Identities=27%  Similarity=0.381  Sum_probs=30.4

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +++|+|||+|..|.+.|..|+ +|++|+++.++.
T Consensus         2 ~mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            2 SLKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            478999999999999999999 999999999853

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=94.32  E-value=0.041  Score=52.59  Aligned_cols=34  Identities=29%  Similarity=0.296  Sum_probs=31.5

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      +.++|+|||+|.-|.+.|..|+++|++|++++++
T Consensus        28 ~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~   61 (356)
T 3k96_A           28 FKHPIAILGAGSWGTALALVLARKGQKVRLWSYE   61 (356)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSC
T ss_pred             cCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence            3578999999999999999999999999999985

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=94.30  E-value=0.042  Score=48.38  Aligned_cols=35  Identities=14%  Similarity=0.340  Sum_probs=32.0

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      -+...|+|||||-.|...|..|.+.|.+|+|++..
T Consensus        29 L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           29 LKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            35688999999999999999999999999999874

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=94.29  E-value=0.051  Score=48.94  Aligned_cols=36  Identities=25%  Similarity=0.336  Sum_probs=31.7

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ...++|.|||+|..|.+.|..|++.|++|++++++.
T Consensus        17 ~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~   52 (245)
T 3dtt_A           17 FQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP   52 (245)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            456889999999999999999999999999999853

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=94.28  E-value=0.05  Score=54.01  Aligned_cols=37  Identities=35%  Similarity=0.371  Sum_probs=34.0

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG   64 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~G   64 (507)
                      ..+++|||||..|+-+|..|++.|.+|+|+|+.+++.
T Consensus       147 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  183 (452)
T 3oc4_A          147 SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLL  183 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccc
Confidence            4789999999999999999999999999999987653

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=94.27  E-value=0.051  Score=52.34  Aligned_cols=35  Identities=26%  Similarity=0.381  Sum_probs=32.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ...+|+|||+|..|+.+|..|...|.+|+++|.+.
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  223 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRP  223 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            45789999999999999999999999999999854

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=94.25  E-value=0.046  Score=52.20  Aligned_cols=37  Identities=22%  Similarity=0.285  Sum_probs=31.8

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +.+.++|.|||.|..|...|..|++.|++|++++++.
T Consensus        19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           19 YFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3456899999999999999999999999999999853

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=94.24  E-value=0.046  Score=51.83  Aligned_cols=35  Identities=31%  Similarity=0.430  Sum_probs=31.3

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      -+.++|.|||+|..|.+.|..|+++|++|+++.++
T Consensus        12 ~~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~   46 (335)
T 1z82_A           12 HMEMRFFVLGAGSWGTVFAQMLHENGEEVILWARR   46 (335)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            35689999999999999999999999999999874

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=94.22  E-value=0.049  Score=53.61  Aligned_cols=35  Identities=26%  Similarity=0.491  Sum_probs=32.3

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ...|+|||.|..|+..|..|+++|++|++++.+..
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            57899999999999999999999999999998653

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=94.19  E-value=0.031  Score=53.84  Aligned_cols=31  Identities=26%  Similarity=0.361  Sum_probs=29.7

Q ss_pred             eEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           30 SVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      +|+|||+|..|.+.|..|+++|++|++++++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~   47 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMN   47 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            8999999999999999999999999999875

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=94.14  E-value=0.048  Score=51.27  Aligned_cols=34  Identities=29%  Similarity=0.466  Sum_probs=29.5

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      -..++|+|||+|..|.+.|..|++.|++|+++ ++
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~   50 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-AR   50 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-Ec
Confidence            35678999999999999999999999999999 64

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=94.08  E-value=0.049  Score=51.26  Aligned_cols=36  Identities=19%  Similarity=0.413  Sum_probs=32.6

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      .+.++|.|||.|..|...|..|++.|++|++++++.
T Consensus        29 ~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           29 PYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            356799999999999999999999999999999853

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=94.07  E-value=0.031  Score=55.52  Aligned_cols=35  Identities=20%  Similarity=0.408  Sum_probs=32.5

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ..++|+|+|+|-.|.+.|..|.+.|++|+|+|++.
T Consensus         2 ~~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            2 NAMKIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             CCEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             CcCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            46789999999999999999999999999999964

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=94.05  E-value=0.041  Score=51.63  Aligned_cols=34  Identities=24%  Similarity=0.255  Sum_probs=30.7

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      .+++|.|||.|..|...|..|++.|+ +|++++++
T Consensus        23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           23 NAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            45789999999999999999999999 99999985

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=94.02  E-value=0.053  Score=50.13  Aligned_cols=33  Identities=27%  Similarity=0.359  Sum_probs=30.9

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ++|.|||.|..|...|..|++.|++|++++++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   34 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSP   34 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            579999999999999999999999999999864

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=93.99  E-value=0.048  Score=51.15  Aligned_cols=35  Identities=26%  Similarity=0.408  Sum_probs=32.0

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ..+|+|||+|.+|+-.|..|++.|.+|+++++.++
T Consensus       155 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~  189 (319)
T 3cty_A          155 GKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPK  189 (319)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCc
Confidence            47899999999999999999999999999998653

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=93.97  E-value=0.06  Score=50.31  Aligned_cols=34  Identities=29%  Similarity=0.516  Sum_probs=30.8

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~   61 (507)
                      +++|+|||||..|.+.|+.|+..|+ +|.++|.+.
T Consensus         2 ~~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            2 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            3689999999999999999999997 999999753

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=93.95  E-value=0.056  Score=50.39  Aligned_cols=33  Identities=33%  Similarity=0.414  Sum_probs=30.4

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCC--eEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASF--KVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~~   61 (507)
                      ++|+|||||..|.+.|+.|+..|+  +|.++|.+.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            479999999999999999999998  999999853

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=93.90  E-value=0.046  Score=53.92  Aligned_cols=32  Identities=19%  Similarity=0.352  Sum_probs=30.1

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ++|+|||+|..|+..|..|++.|++|++++++
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~   32 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVS   32 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            47999999999999999999999999999985

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=93.88  E-value=0.062  Score=50.48  Aligned_cols=35  Identities=20%  Similarity=0.214  Sum_probs=32.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCC-CeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~~   61 (507)
                      ++++|.|||.|..|.+.|..|++.| ++|++++++.
T Consensus        23 M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           23 MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            4578999999999999999999999 9999999864

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=93.87  E-value=0.051  Score=53.85  Aligned_cols=37  Identities=16%  Similarity=0.101  Sum_probs=33.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCe-EEEEecCCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFK-VVLLESRDRV   63 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~-V~vlE~~~~~   63 (507)
                      ...+|+|||+|.+|+-.|..|++.|.+ |+|+++++.+
T Consensus       211 ~~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~  248 (447)
T 2gv8_A          211 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD  248 (447)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS
T ss_pred             CCCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence            457899999999999999999999998 9999997654

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=93.78  E-value=0.052  Score=51.78  Aligned_cols=35  Identities=26%  Similarity=0.400  Sum_probs=32.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ...+|+|||+|..|+.+|..|...|.+|++++++.
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            45789999999999999999999999999999853

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=93.77  E-value=0.079  Score=49.49  Aligned_cols=34  Identities=35%  Similarity=0.527  Sum_probs=31.5

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      +..+|+|||+|..|.+.|+.|++.|+ +|+++|.+
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            45789999999999999999999999 99999986

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=93.72  E-value=0.067  Score=47.05  Aligned_cols=34  Identities=29%  Similarity=0.406  Sum_probs=30.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      +.++|+|||+|..|...|..|++.|++|.+++++
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~   60 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRN   60 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3468999999999999999999999999999885

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=93.71  E-value=0.07  Score=50.08  Aligned_cols=35  Identities=14%  Similarity=0.262  Sum_probs=31.6

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ..++|+|||+|..|...|..|++.|++|.+++++.
T Consensus        29 ~~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~   63 (316)
T 2uyy_A           29 TDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA   63 (316)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            34789999999999999999999999999998753

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=93.66  E-value=0.041  Score=50.91  Aligned_cols=33  Identities=24%  Similarity=0.344  Sum_probs=30.8

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ++|.|||.|..|...|..|++.|++|++++++.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~   34 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNP   34 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            579999999999999999999999999999864

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=93.65  E-value=0.053  Score=54.01  Aligned_cols=34  Identities=18%  Similarity=0.382  Sum_probs=31.1

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhC--CCeEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~   60 (507)
                      ++++|+|||+|..|+..|..|++.  |++|++++++
T Consensus         4 ~~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~   39 (467)
T 2q3e_A            4 EIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVN   39 (467)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            457899999999999999999999  8999999875

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=93.62  E-value=0.041  Score=44.90  Aligned_cols=33  Identities=18%  Similarity=0.360  Sum_probs=30.7

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ..+|+|||+|..|...|..|.+.|.+|+|++++
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~   53 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRN   53 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence            578999999999999999999999999999985

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=93.59  E-value=0.064  Score=53.43  Aligned_cols=34  Identities=26%  Similarity=0.410  Sum_probs=31.3

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ..+|+|||+|..|...|..|+++|++|+++|++.
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~   38 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA   38 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4579999999999999999999999999999854

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=93.56  E-value=0.079  Score=49.49  Aligned_cols=36  Identities=25%  Similarity=0.290  Sum_probs=32.4

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      .+.++|.|||.|..|...|..|++.|++|++++++.
T Consensus         7 ~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~   42 (306)
T 3l6d_A            7 SFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP   42 (306)
T ss_dssp             CCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            345789999999999999999999999999998853

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=93.56  E-value=0.054  Score=50.31  Aligned_cols=35  Identities=23%  Similarity=0.405  Sum_probs=29.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +..+|.+||-|..|...|..|.++|++|++++++.
T Consensus         4 Ms~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~   38 (297)
T 4gbj_A            4 MSEKIAFLGLGNLGTPIAEILLEAGYELVVWNRTA   38 (297)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHHTTCEEEEC----
T ss_pred             CCCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            45689999999999999999999999999999864

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=93.56  E-value=0.059  Score=52.46  Aligned_cols=31  Identities=19%  Similarity=0.294  Sum_probs=29.0

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ++|+|||+|..|+..|..|++ |++|++++++
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~   31 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDIL   31 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECC
Confidence            379999999999999999999 9999999985

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=93.48  E-value=0.083  Score=50.69  Aligned_cols=34  Identities=26%  Similarity=0.443  Sum_probs=31.5

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      |++|+|||||..|..+|+.+.+.|++|++++.+.
T Consensus         1 MK~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~   34 (363)
T 4ffl_A            1 MKTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNP   34 (363)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            5789999999999999999999999999999864

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=93.36  E-value=0.06  Score=54.54  Aligned_cols=36  Identities=39%  Similarity=0.432  Sum_probs=32.6

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ...+|+|||||.+|+-+|..|++.|.+|+++|+.++
T Consensus       354 ~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~  389 (521)
T 1hyu_A          354 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE  389 (521)
T ss_dssp             BTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcc
Confidence            357899999999999999999999999999998654

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=93.34  E-value=0.062  Score=55.47  Aligned_cols=33  Identities=21%  Similarity=0.246  Sum_probs=30.5

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ..+|+|||||.+|+-+|..|++.|.+|+|+|+.
T Consensus       286 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          286 PGKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            347999999999999999999999999999984

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=93.34  E-value=0.087  Score=49.26  Aligned_cols=33  Identities=33%  Similarity=0.484  Sum_probs=29.9

Q ss_pred             CeEEEECccHHHHHHHHHHHhC--CCeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDA--SFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~   61 (507)
                      ++|+|||+|..|.+.|..|++.  |++|+++|.+.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4799999999999999999985  78999999864

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=93.33  E-value=0.062  Score=50.90  Aligned_cols=31  Identities=29%  Similarity=0.354  Sum_probs=29.4

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEec
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLES   59 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~   59 (507)
                      ++|+|||+|..|.+.|..|++.|++|+++++
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            3799999999999999999999999999988

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=93.31  E-value=0.041  Score=48.65  Aligned_cols=34  Identities=24%  Similarity=0.342  Sum_probs=30.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEE-EecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVL-LESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~v-lE~~   60 (507)
                      ++++|+|||+|..|.+.|..|++.|++|++ ++++
T Consensus        22 ~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~   56 (220)
T 4huj_A           22 SMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRG   56 (220)
T ss_dssp             GSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence            457899999999999999999999999988 6664

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=93.30  E-value=0.096  Score=51.95  Aligned_cols=37  Identities=30%  Similarity=0.387  Sum_probs=32.4

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRDR   62 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~~   62 (507)
                      ....+|+|||||.+|+-+|..|.+.|. +|+|+++.++
T Consensus       262 ~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~  299 (456)
T 2vdc_G          262 AAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDR  299 (456)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCS
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCc
Confidence            346789999999999999999999997 6999988653

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=93.29  E-value=0.1  Score=48.86  Aligned_cols=34  Identities=21%  Similarity=0.331  Sum_probs=31.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC--eEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF--KVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~   60 (507)
                      ...+|+|||+|..|.+.|+.|+..|.  +|.++|.+
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~   55 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVM   55 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence            56899999999999999999999987  89999974

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=93.28  E-value=0.085  Score=49.50  Aligned_cols=35  Identities=29%  Similarity=0.427  Sum_probs=30.8

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC--eEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF--KVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~~   61 (507)
                      +.++|+|||+|-.|.+.|+.|+..|.  +|.++|.+.
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            35789999999999999999999987  899999853

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=93.19  E-value=0.066  Score=53.46  Aligned_cols=33  Identities=18%  Similarity=0.400  Sum_probs=30.4

Q ss_pred             CCeEEEECccHHHHHHHHHHHhC--CCeEEEEecC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESR   60 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~   60 (507)
                      +++|+|||+|..|+..|..|+++  |++|++++++
T Consensus         9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~   43 (481)
T 2o3j_A            9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMN   43 (481)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            46899999999999999999998  7999999874

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=93.15  E-value=0.1  Score=48.63  Aligned_cols=36  Identities=28%  Similarity=0.441  Sum_probs=32.6

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ...+|+|||+|.+|+-+|..|++.|.+|+++++.++
T Consensus       146 ~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~  181 (315)
T 3r9u_A          146 KNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDE  181 (315)
T ss_dssp             TTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSS
T ss_pred             CcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCC
Confidence            357899999999999999999999999999998654

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=93.14  E-value=0.084  Score=50.28  Aligned_cols=35  Identities=31%  Similarity=0.442  Sum_probs=32.3

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      -...+|+|+|||.+|..+|..|...|. +|.++|++
T Consensus       186 l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~  221 (398)
T 2a9f_A          186 LDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF  221 (398)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            456899999999999999999999998 99999986

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=93.11  E-value=0.085  Score=49.08  Aligned_cols=34  Identities=24%  Similarity=0.248  Sum_probs=30.8

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ++++|.|||+|..|...|..|++.|++|++++++
T Consensus         3 ~~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~   36 (301)
T 3cky_A            3 KSIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLM   36 (301)
T ss_dssp             -CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4578999999999999999999999999999875

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=93.11  E-value=0.08  Score=49.18  Aligned_cols=33  Identities=24%  Similarity=0.428  Sum_probs=30.2

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      +++|+|||+|..|...|..|++.|++|.+++++
T Consensus         5 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~   37 (299)
T 1vpd_A            5 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRN   37 (299)
T ss_dssp             -CEEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             cceEEEECchHHHHHHHHHHHhCCCEEEEEeCC
Confidence            468999999999999999999999999999875

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=93.07  E-value=0.089  Score=49.19  Aligned_cols=36  Identities=36%  Similarity=0.483  Sum_probs=32.7

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ...+|+|||+|.+|+-+|..|++.|.+|+++++.++
T Consensus       153 ~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~  188 (323)
T 3f8d_A          153 KNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDT  188 (323)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCC
Confidence            357899999999999999999999999999998654

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=93.03  E-value=0.083  Score=49.11  Aligned_cols=35  Identities=26%  Similarity=0.508  Sum_probs=30.8

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC--eEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF--KVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~~   61 (507)
                      ++.+|+|||||..|.+.|+.|+.+|+  +|.++|.+.
T Consensus        13 ~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~   49 (303)
T 2i6t_A           13 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSE   49 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            35789999999999999999999998  999999865

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=93.03  E-value=0.12  Score=48.52  Aligned_cols=40  Identities=20%  Similarity=0.347  Sum_probs=32.7

Q ss_pred             CCCCCCCCCeEEEECccHHHHHHHHHHHhCCC--eEEEEecC
Q 010542           21 AGKGQARSPSVIVIGAGMAGVAAARALHDASF--KVVLLESR   60 (507)
Q Consensus        21 ~~~~~~~~~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~   60 (507)
                      ..+......+|+|||+|..|.+.|+.|+.+|.  ++.++|.+
T Consensus        12 ~~~~~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~   53 (331)
T 4aj2_A           12 LKEEQVPQNKITVVGVGAVGMACAISILMKDLADELALVDVI   53 (331)
T ss_dssp             CC---CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             cccccCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence            33334567899999999999999999999987  89999974

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=93.00  E-value=0.11  Score=45.43  Aligned_cols=32  Identities=25%  Similarity=0.323  Sum_probs=29.5

Q ss_pred             CeEEEEC-ccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           29 PSVIVIG-AGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        29 ~dv~IIG-aGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ++|+||| +|..|...|..|++.|++|.+++++
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~   33 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRR   33 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3699999 9999999999999999999999874

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=92.98  E-value=0.061  Score=50.45  Aligned_cols=32  Identities=19%  Similarity=0.187  Sum_probs=29.8

Q ss_pred             CCeEEEECccHHHHHHHHHHHhC-----C-CeEEEEec
Q 010542           28 SPSVIVIGAGMAGVAAARALHDA-----S-FKVVLLES   59 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~-----G-~~V~vlE~   59 (507)
                      +++|+|||+|..|.+.|..|++.     | ++|+++++
T Consensus         8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            36899999999999999999999     9 99999986

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=92.91  E-value=0.13  Score=48.24  Aligned_cols=35  Identities=23%  Similarity=0.312  Sum_probs=31.6

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~   61 (507)
                      +..+|+|||+|..|.+.|+.|+..|. +|.++|.+.
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~   39 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ   39 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence            35789999999999999999999988 999999864

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=92.89  E-value=0.13  Score=47.71  Aligned_cols=35  Identities=23%  Similarity=0.470  Sum_probs=31.6

Q ss_pred             CCCeEEEEC-ccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIG-AGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIG-aGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +..+|+||| +|..|.+.|..|++.|++|.+++++.
T Consensus        20 ~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~   55 (298)
T 2pv7_A           20 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   55 (298)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence            345799999 99999999999999999999998754

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=92.88  E-value=0.089  Score=49.20  Aligned_cols=33  Identities=24%  Similarity=0.396  Sum_probs=30.3

Q ss_pred             CeEEEECccHHHHHHHHHHHhCC--CeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDAS--FKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~   61 (507)
                      ++|+|||+|-.|.+.|..|+++|  .+|++++++.
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            58999999999999999999999  7999999853

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=92.86  E-value=0.039  Score=48.86  Aligned_cols=34  Identities=21%  Similarity=0.219  Sum_probs=31.4

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ..++|.|||+|..|-+.|..|+++|++|+++.+.
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~   38 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP   38 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence            4578999999999999999999999999999874

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=92.85  E-value=0.1  Score=54.90  Aligned_cols=34  Identities=32%  Similarity=0.505  Sum_probs=31.4

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      +..+|+|||+|..|...|..|+++|++|+++|.+
T Consensus       311 ~~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~  344 (725)
T 2wtb_A          311 KIKKVAIIGGGLMGSGIATALILSNYPVILKEVN  344 (725)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             cCcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECC
Confidence            3467999999999999999999999999999985

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=92.81  E-value=0.11  Score=48.89  Aligned_cols=34  Identities=29%  Similarity=0.479  Sum_probs=30.8

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC--eEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF--KVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~   60 (507)
                      ...+|+|||+|..|.+.|+.|+..|.  +|.++|.+
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~   39 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVN   39 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence            46789999999999999999999887  89999974

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=92.79  E-value=0.14  Score=47.23  Aligned_cols=33  Identities=27%  Similarity=0.550  Sum_probs=30.7

Q ss_pred             CCeEEEECc-cHHHHHHHHHHHhCCCeEEEEecC
Q 010542           28 SPSVIVIGA-GMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        28 ~~dv~IIGa-GiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      +++|+|||+ |..|.+.|..|++.|++|++++++
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~   44 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIA   44 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            468999999 999999999999999999999874

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=92.69  E-value=0.11  Score=49.48  Aligned_cols=35  Identities=29%  Similarity=0.417  Sum_probs=32.2

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      -+..+|+|+|||.+|..+|..|...|. +|+|++++
T Consensus       190 l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          190 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            467899999999999999999999997 89999985

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=92.68  E-value=0.093  Score=49.31  Aligned_cols=32  Identities=28%  Similarity=0.442  Sum_probs=29.9

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCC--eEEEEecC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASF--KVVLLESR   60 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~   60 (507)
                      ++|+|||+|..|.+.|..|++.|+  +|++++.+
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~   34 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            479999999999999999999998  99999985

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=92.66  E-value=0.13  Score=48.06  Aligned_cols=34  Identities=24%  Similarity=0.474  Sum_probs=31.2

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCC--eEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASF--KVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~~   61 (507)
                      .++|+|||+|..|.+.|..|++.|+  +|.+++++.
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            4789999999999999999999999  999999854

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=92.60  E-value=0.069  Score=52.10  Aligned_cols=30  Identities=20%  Similarity=0.210  Sum_probs=28.3

Q ss_pred             CeEEEECccHHHHHHHHHHHh-CCCeEEEEe
Q 010542           29 PSVIVIGAGMAGVAAARALHD-ASFKVVLLE   58 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~-~G~~V~vlE   58 (507)
                      ++|+|||+|..|.+.|..|++ .|++|++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            589999999999999999998 599999998

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=92.53  E-value=0.13  Score=51.51  Aligned_cols=37  Identities=30%  Similarity=0.522  Sum_probs=33.8

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ...+++|||+|..|+-.|..|++.|.+|+++|+.+++
T Consensus       190 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  226 (484)
T 3o0h_A          190 LPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLI  226 (484)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence            3578999999999999999999999999999998765

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=92.52  E-value=0.13  Score=49.86  Aligned_cols=35  Identities=37%  Similarity=0.499  Sum_probs=31.6

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ...+|+|||+|..|+.+|..|...|.+|++++.+.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~  205 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP  205 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            35789999999999999999999999999999853

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=92.51  E-value=0.12  Score=46.80  Aligned_cols=34  Identities=18%  Similarity=0.334  Sum_probs=30.4

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ++++|+|||+|..|...|..|.+.|++|.+++++
T Consensus         2 ~~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~   35 (259)
T 2ahr_A            2 NAMKIGIIGVGKMASAIIKGLKQTPHELIISGSS   35 (259)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSS
T ss_pred             CccEEEEECCCHHHHHHHHHHHhCCCeEEEECCC
Confidence            3468999999999999999999999999999874

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=92.43  E-value=0.13  Score=46.23  Aligned_cols=33  Identities=15%  Similarity=0.320  Sum_probs=30.4

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCC----eEEEEecC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASF----KVVLLESR   60 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~----~V~vlE~~   60 (507)
                      +++|.|||+|..|.+.|..|.+.|+    +|.+++++
T Consensus         2 ~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~   38 (247)
T 3gt0_A            2 DKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLN   38 (247)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSC
T ss_pred             CCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCC
Confidence            4689999999999999999999998    99999885

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=92.42  E-value=0.11  Score=51.47  Aligned_cols=35  Identities=17%  Similarity=0.297  Sum_probs=32.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      .+++|.|||.|..|...|..|+++|++|++++++.
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~   37 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   37 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            35689999999999999999999999999999864

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=92.38  E-value=0.12  Score=50.31  Aligned_cols=35  Identities=29%  Similarity=0.416  Sum_probs=31.7

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ....|+|||.|-.|...|..|.+.|++|+|+|.+.
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~   37 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDP   37 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            34679999999999999999999999999999864

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=92.36  E-value=0.12  Score=48.64  Aligned_cols=35  Identities=31%  Similarity=0.319  Sum_probs=30.7

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCC----CeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDAS----FKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G----~~V~vlE~~~   61 (507)
                      ++++|.|||+|..|.+.|..|.+.|    ++|++++++.
T Consensus        21 ~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             -CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            3568999999999999999999999    7999998753

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=92.34  E-value=0.15  Score=49.28  Aligned_cols=35  Identities=26%  Similarity=0.384  Sum_probs=31.9

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ...+|+|||+|..|+.+|..|...|.+|++++.+.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~  205 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA  205 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46789999999999999999999999999999853

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=92.32  E-value=0.13  Score=47.50  Aligned_cols=34  Identities=18%  Similarity=0.117  Sum_probs=30.7

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ...+|+|||+|.+|+-+|..|++.| +|+++++.+
T Consensus       140 ~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~  173 (297)
T 3fbs_A          140 DQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGI  173 (297)
T ss_dssp             TTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTT
T ss_pred             cCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCC
Confidence            3578999999999999999999999 999998754

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=92.31  E-value=0.083  Score=50.96  Aligned_cols=35  Identities=11%  Similarity=0.173  Sum_probs=31.5

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCC-------CeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDAS-------FKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G-------~~V~vlE~~~~   62 (507)
                      +++|+|||+|..|.+.|..|+++|       ++|++++++..
T Consensus        21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            357999999999999999999999       99999998654

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=92.30  E-value=0.092  Score=48.66  Aligned_cols=33  Identities=21%  Similarity=0.243  Sum_probs=29.8

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +++|.|||+|..|...|..|++.|++|++++ +.
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~   35 (295)
T 1yb4_A            3 AMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IG   35 (295)
T ss_dssp             -CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SS
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CH
Confidence            4689999999999999999999999999998 54

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=92.29  E-value=0.16  Score=46.42  Aligned_cols=34  Identities=21%  Similarity=0.249  Sum_probs=31.1

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      +...++|+|+|-.|.++|..|++.|.+|+|+.++
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~  151 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRT  151 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECC
Confidence            4568999999999999999999999999999875

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=92.26  E-value=0.14  Score=46.90  Aligned_cols=32  Identities=19%  Similarity=0.316  Sum_probs=29.6

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ++|+|||+|..|.+.|..|.+.|++|.+++++
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~   32 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ   32 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            37999999999999999999999999999874

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=92.23  E-value=0.15  Score=46.76  Aligned_cols=32  Identities=25%  Similarity=0.526  Sum_probs=29.6

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCC--eEEEEecC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASF--KVVLLESR   60 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~   60 (507)
                      ++|+|||+|..|.+.|..|++.|+  +|.+++++
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~   35 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   35 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            579999999999999999999998  89999875

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=92.22  E-value=0.12  Score=47.79  Aligned_cols=33  Identities=18%  Similarity=0.186  Sum_probs=30.0

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCC--eEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASF--KVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~~   61 (507)
                      ++|+|||+|..|.+.|+.|++.|+  +|.++|.+.
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            479999999999999999999987  899999853

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=92.17  E-value=0.12  Score=46.91  Aligned_cols=32  Identities=19%  Similarity=0.352  Sum_probs=29.6

Q ss_pred             CeEEEECccHHHHHHHHHHHhCC-CeEEEEecC
Q 010542           29 PSVIVIGAGMAGVAAARALHDAS-FKVVLLESR   60 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~   60 (507)
                      ++|.|||+|..|.+.|..|++.| ++|.+++++
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~   33 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRG   33 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSS
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCC
Confidence            37999999999999999999999 999999875

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=92.13  E-value=0.14  Score=47.08  Aligned_cols=35  Identities=14%  Similarity=0.304  Sum_probs=31.5

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ++++|+|+|||..|...+..|.++|++|+++.++.
T Consensus         4 m~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            4 MTGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             -CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            45789999999999999999999999999998754

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=92.12  E-value=0.079  Score=50.61  Aligned_cols=35  Identities=23%  Similarity=0.325  Sum_probs=31.5

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCC-------CeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDAS-------FKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G-------~~V~vlE~~~~   62 (507)
                      .++|+|||+|..|.+.|..|++.|       ++|++++++..
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            358999999999999999999999       89999998653

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=92.12  E-value=0.14  Score=47.95  Aligned_cols=35  Identities=20%  Similarity=0.310  Sum_probs=31.4

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCC--eEEEEecC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASF--KVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~   60 (507)
                      ....+|+|||+|..|.+.|+.|+..|.  ++.++|.+
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~   43 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            456799999999999999999999887  89999974

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=92.05  E-value=0.14  Score=51.17  Aligned_cols=35  Identities=20%  Similarity=0.219  Sum_probs=32.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +..+|.|||+|..|...|..|+++|++|++++++.
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~   43 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ   43 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            45689999999999999999999999999999854

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=92.04  E-value=0.18  Score=48.31  Aligned_cols=33  Identities=21%  Similarity=0.438  Sum_probs=30.8

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ..+|+|+|+|-.|+.++..|+..|.+|++++++
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~  199 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN  199 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            378999999999999999999999999999985

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=91.96  E-value=0.14  Score=47.82  Aligned_cols=33  Identities=33%  Similarity=0.547  Sum_probs=30.0

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCC--eEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASF--KVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~~   61 (507)
                      ++|+|||+|..|.+.|+.|++.|.  +|.++|.+.
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   35 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD   35 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence            579999999999999999999886  899999864

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=91.89  E-value=0.16  Score=50.51  Aligned_cols=36  Identities=19%  Similarity=0.386  Sum_probs=31.1

Q ss_pred             CCCeEEEECccHHHHHHHHHHH--------------------hCCC-eEEEEecCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALH--------------------DASF-KVVLLESRDR   62 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~--------------------~~G~-~V~vlE~~~~   62 (507)
                      ...+|+|||+|.+|+-+|..|+                    +.|. +|+|+++.+.
T Consensus       144 ~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~  200 (460)
T 1cjc_A          144 SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP  200 (460)
T ss_dssp             TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCCh
Confidence            4578999999999999999999                    5687 7999998653

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=91.84  E-value=0.14  Score=53.77  Aligned_cols=35  Identities=17%  Similarity=0.277  Sum_probs=31.8

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +..+|+|||+|..|...|..|+++|++|+++|.+.
T Consensus       313 ~i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  347 (715)
T 1wdk_A          313 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINE  347 (715)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             cCCEEEEECCChhhHHHHHHHHhCCCEEEEEECCH
Confidence            35679999999999999999999999999999853

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=91.84  E-value=0.21  Score=45.38  Aligned_cols=34  Identities=24%  Similarity=0.384  Sum_probs=31.6

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ..+++|||+|-+|-++|+.|++.|.+|+|+.++.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~  151 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSS  151 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            6789999999999999999999999999998864

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=91.81  E-value=0.14  Score=50.08  Aligned_cols=34  Identities=15%  Similarity=0.330  Sum_probs=30.8

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ..+..|||.|..|+..|..|+++|++|++++.+.
T Consensus        11 ~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~   44 (431)
T 3ojo_A           11 GSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQ   44 (431)
T ss_dssp             -CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4678999999999999999999999999999853

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=91.79  E-value=0.17  Score=47.77  Aligned_cols=35  Identities=29%  Similarity=0.384  Sum_probs=31.7

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ...+|+|||.|..|-+.|..|.+.|++|.+++++.
T Consensus         7 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            7 ISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            35679999999999999999999999999999853

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=91.75  E-value=0.14  Score=46.43  Aligned_cols=35  Identities=17%  Similarity=0.266  Sum_probs=31.4

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCC----CeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDAS----FKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G----~~V~vlE~~~~   62 (507)
                      +++|.|||+|..|.+.|..|++.|    ++|.+++++..
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            468999999999999999999999    79999998654

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=91.74  E-value=0.2  Score=48.12  Aligned_cols=35  Identities=26%  Similarity=0.471  Sum_probs=31.7

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ....|+|+|+|..|+.+|..|+..|.+|++++++.
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            34789999999999999999999999999999753

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=91.73  E-value=0.13  Score=47.35  Aligned_cols=32  Identities=25%  Similarity=0.320  Sum_probs=29.3

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ++|+|||+|..|...|..|++ |++|.+++++.
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~   33 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF   33 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            479999999999999999999 99999998753

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=91.69  E-value=0.15  Score=47.32  Aligned_cols=33  Identities=21%  Similarity=0.322  Sum_probs=30.1

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ++|.|||+|..|...|..|++.|++|.+++++.
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~   33 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP   33 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            369999999999999999999999999998753

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=91.68  E-value=0.17  Score=50.00  Aligned_cols=34  Identities=21%  Similarity=0.339  Sum_probs=31.6

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      +...|+|||+|-+|...|..|.+.|.+|+|++.+
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            4578999999999999999999999999999974

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=91.65  E-value=0.14  Score=51.06  Aligned_cols=34  Identities=15%  Similarity=0.312  Sum_probs=31.1

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      .+++|.|||+|..|.+.|..|+++|++|++++++
T Consensus        14 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~   47 (480)
T 2zyd_A           14 SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRS   47 (480)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            4567999999999999999999999999999885

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=91.58  E-value=0.22  Score=44.22  Aligned_cols=35  Identities=20%  Similarity=0.306  Sum_probs=31.4

Q ss_pred             CCCeEEEECc-cHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGA-GMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGa-GiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +.+.|+|.|| |..|...|..|+++|++|.++.++.
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            4678999998 9999999999999999999998854

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=91.54  E-value=0.16  Score=46.40  Aligned_cols=34  Identities=26%  Similarity=0.340  Sum_probs=31.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      +...++|+|+|-+|.++|+.|++.|.+|+|+.++
T Consensus       118 ~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~  151 (272)
T 1p77_A          118 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRT  151 (272)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            4578999999999999999999999999999885

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=91.49  E-value=0.18  Score=46.74  Aligned_cols=34  Identities=21%  Similarity=0.336  Sum_probs=31.5

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +.+|.+||-|..|...|.+|.++|++|+|++++.
T Consensus         3 M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~   36 (300)
T 3obb_A            3 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   36 (300)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             cCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            5689999999999999999999999999999853

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=91.41  E-value=0.22  Score=46.18  Aligned_cols=34  Identities=18%  Similarity=0.258  Sum_probs=31.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      ....|+|||+|-+|.++|+.|++.|. +|+|+.++
T Consensus       140 ~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~  174 (297)
T 2egg_A          140 DGKRILVIGAGGGARGIYFSLLSTAAERIDMANRT  174 (297)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSS
T ss_pred             CCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            45689999999999999999999997 99999875

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=91.36  E-value=0.19  Score=47.03  Aligned_cols=34  Identities=26%  Similarity=0.503  Sum_probs=30.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC--eEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF--KVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~   60 (507)
                      +.++|+|||||-.|.+.|+.|+..|.  +|.++|.+
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~   40 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD   40 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            45799999999999999999998885  89999874

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=91.29  E-value=0.17  Score=50.53  Aligned_cols=33  Identities=18%  Similarity=0.319  Sum_probs=30.7

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ++|.|||+|..|...|..|++.|++|.+++++.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            579999999999999999999999999999853

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=91.25  E-value=0.21  Score=43.96  Aligned_cols=35  Identities=23%  Similarity=0.433  Sum_probs=31.5

Q ss_pred             CCCeEEEECc-cHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGA-GMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGa-GiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ++++|+|+|| |..|...+..|.++|++|.++.++.
T Consensus         3 ~m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~   38 (227)
T 3dhn_A            3 KVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHP   38 (227)
T ss_dssp             CCCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCc
Confidence            3578999996 9999999999999999999999863

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=91.19  E-value=0.18  Score=45.34  Aligned_cols=33  Identities=30%  Similarity=0.496  Sum_probs=30.5

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      ..+|+|||+|-.|..+|..|++.|. +++|++..
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d   64 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   64 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            5789999999999999999999997 89999984

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=91.18  E-value=0.25  Score=47.59  Aligned_cols=34  Identities=38%  Similarity=0.538  Sum_probs=31.4

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ....|+|||+|..|+.+|..|+..|.+|++++++
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~  200 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDIN  200 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            4678999999999999999999999999999975

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=91.15  E-value=0.21  Score=46.80  Aligned_cols=34  Identities=32%  Similarity=0.592  Sum_probs=30.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC--eEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF--KVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~   60 (507)
                      +..+|+|||+|..|-+.|+.|+..|.  +|.++|.+
T Consensus         5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~   40 (316)
T 1ldn_A            5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (316)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            45799999999999999999998875  89999985

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=91.14  E-value=0.21  Score=52.85  Aligned_cols=35  Identities=14%  Similarity=0.217  Sum_probs=32.3

Q ss_pred             CCCeEEEEC--ccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIG--AGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIG--aGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ...+|+|||  ||.+|+-+|..|++.|.+|+|+|+.+
T Consensus       527 ~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          527 IGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             CCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            457899999  99999999999999999999999866

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=91.12  E-value=0.22  Score=45.66  Aligned_cols=34  Identities=12%  Similarity=0.254  Sum_probs=30.9

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCC---eEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASF---KVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~---~V~vlE~~~   61 (507)
                      +++|.|||+|..|.+.|..|.+.|+   +|.+++++.
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL   39 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence            4689999999999999999999998   899999854

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=91.09  E-value=0.26  Score=45.77  Aligned_cols=36  Identities=22%  Similarity=0.316  Sum_probs=32.6

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      -...+|+|||+|-.|..+|..|...|.+|++++++.
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            356789999999999999999999999999999853

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=91.05  E-value=0.24  Score=46.77  Aligned_cols=34  Identities=21%  Similarity=0.372  Sum_probs=30.3

Q ss_pred             CCCeEEEECc-cHHHHHHHHHHHhCCC--eEEEEecC
Q 010542           27 RSPSVIVIGA-GMAGVAAARALHDASF--KVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGa-GiaGL~aA~~L~~~G~--~V~vlE~~   60 (507)
                      ...+|+|||+ |..|.++|+.|+..|.  +|.++|.+
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~   43 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF   43 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            4678999998 9999999999999984  89999974

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=91.03  E-value=0.25  Score=45.36  Aligned_cols=34  Identities=24%  Similarity=0.366  Sum_probs=31.2

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +++|+|.|+|..|...+..|.++|++|+++.++.
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   36 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSA   36 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4679999999999999999999999999998864

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=91.03  E-value=0.19  Score=45.64  Aligned_cols=31  Identities=26%  Similarity=0.179  Sum_probs=28.3

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEec
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLES   59 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~   59 (507)
                      ++|.|||+|..|.+.|..|++.|++|+++++
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            3799999999999999999999999999755

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=90.96  E-value=0.2  Score=46.86  Aligned_cols=35  Identities=20%  Similarity=0.413  Sum_probs=30.9

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCC--eEEEEecC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASF--KVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~   60 (507)
                      .+.++|+|||||-.|.+.|+.|+..+.  ++.++|.+
T Consensus         3 ~~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~   39 (318)
T 1ez4_A            3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (318)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            455899999999999999999998876  89999974

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=90.93  E-value=0.17  Score=48.37  Aligned_cols=40  Identities=33%  Similarity=0.660  Sum_probs=35.3

Q ss_pred             CCCeEEEECc-cHHHHHHHHHHHhCCC---eEEEEecCC-CCCce
Q 010542           27 RSPSVIVIGA-GMAGVAAARALHDASF---KVVLLESRD-RVGGR   66 (507)
Q Consensus        27 ~~~dv~IIGa-GiaGL~aA~~L~~~G~---~V~vlE~~~-~~GG~   66 (507)
                      ...+|+|||| |.+|+.|+..+...|.   +|+++|.+. .-||+
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~g~~  257 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSRGGP  257 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTTCSC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccccCCc
Confidence            5678999999 9999999999999997   999999975 44665

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=90.87  E-value=0.29  Score=45.28  Aligned_cols=36  Identities=25%  Similarity=0.349  Sum_probs=32.5

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      -...+|.|||+|-.|..+|..|...|.+|++++++.
T Consensus       153 l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          153 IHGANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            356789999999999999999999999999999853

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=90.85  E-value=0.23  Score=47.09  Aligned_cols=33  Identities=15%  Similarity=0.307  Sum_probs=30.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ...+|+|||+|.+|+-+|..|++.| +|+++++.
T Consensus       162 ~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~  194 (357)
T 4a9w_A          162 AGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQH  194 (357)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSS
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECC
Confidence            4578999999999999999999998 69999885

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=90.83  E-value=0.18  Score=50.18  Aligned_cols=32  Identities=28%  Similarity=0.461  Sum_probs=30.1

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ++|.|||+|..|...|..|+++|++|++++++
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~   33 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRT   33 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            47999999999999999999999999999985

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=90.44  E-value=0.3  Score=51.20  Aligned_cols=36  Identities=31%  Similarity=0.338  Sum_probs=32.7

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      .+-.+|+|||||..|-..|+.++.+|++|+++|.+.
T Consensus       314 ~~i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~  349 (742)
T 3zwc_A          314 QPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDP  349 (742)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             ccccEEEEEcccHHHHHHHHHHHhCCCchhcccchH
Confidence            346789999999999999999999999999999854

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=90.43  E-value=0.33  Score=42.39  Aligned_cols=32  Identities=22%  Similarity=0.302  Sum_probs=29.4

Q ss_pred             CeEEEECc-cHHHHHHHHHHHhCCCeEEEEecC
Q 010542           29 PSVIVIGA-GMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        29 ~dv~IIGa-GiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ++|+|+|| |..|...+..|.++|++|.++.++
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~   33 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRN   33 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcC
Confidence            46999996 999999999999999999999885

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=90.43  E-value=0.23  Score=45.49  Aligned_cols=34  Identities=35%  Similarity=0.422  Sum_probs=31.1

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ...+|+|||+|-.|-+.|..|.+.|.+|+|++++
T Consensus       128 ~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~  161 (275)
T 2hk9_A          128 KEKSILVLGAGGASRAVIYALVKEGAKVFLWNRT  161 (275)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCCEEEEECchHHHHHHHHHHHHcCCEEEEEECC
Confidence            3568999999999999999999999999999885

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=90.43  E-value=0.27  Score=45.69  Aligned_cols=35  Identities=20%  Similarity=0.218  Sum_probs=30.8

Q ss_pred             CCCCeEEEECcc-HHHHHHHHHHHhCCCeEEEEecC
Q 010542           26 ARSPSVIVIGAG-MAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGaG-iaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      -...+++|||+| +.|..+|..|...|.+|+|++++
T Consensus       175 l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          175 LYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             TTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence            467899999999 67999999999999999988653

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=90.35  E-value=0.24  Score=49.26  Aligned_cols=33  Identities=15%  Similarity=0.290  Sum_probs=30.8

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      +.+|.|||+|..|...|..|+++|++|.+++++
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~   37 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRT   37 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCC
Confidence            468999999999999999999999999999985

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=90.31  E-value=0.19  Score=45.76  Aligned_cols=33  Identities=27%  Similarity=0.470  Sum_probs=30.0

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCe-EEEEecC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFK-VVLLESR   60 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~-V~vlE~~   60 (507)
                      +++|+|||+|..|...|..|++.|++ |.+++++
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~   43 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRT   43 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            36899999999999999999999998 8999875

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=90.27  E-value=0.15  Score=45.43  Aligned_cols=34  Identities=24%  Similarity=0.380  Sum_probs=30.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ....|+|+|+|-.|...|..|.+.|+ |+++|++.
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~   41 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV-FVLAEDEN   41 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGG
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCH
Confidence            45689999999999999999999999 99999864

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=90.22  E-value=0.29  Score=45.92  Aligned_cols=35  Identities=20%  Similarity=0.310  Sum_probs=30.8

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCC--eEEEEecC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASF--KVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~   60 (507)
                      ++.++|+|||||-.|.+.|+.|+..+.  ++.++|.+
T Consensus         7 ~~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~   43 (326)
T 2zqz_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            456899999999999999999998875  79999974

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=90.22  E-value=0.23  Score=45.71  Aligned_cols=32  Identities=19%  Similarity=0.163  Sum_probs=28.7

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCC--eEEEEecC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASF--KVVLLESR   60 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~   60 (507)
                      ++|+|||||-.|-++|+.|..+|.  ++.++|..
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~   34 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA   34 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            589999999999999999998874  79999974

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=90.15  E-value=0.29  Score=45.75  Aligned_cols=33  Identities=24%  Similarity=0.376  Sum_probs=29.9

Q ss_pred             CeEEEECc-cHHHHHHHHHHHhCC--CeEEEEecCC
Q 010542           29 PSVIVIGA-GMAGVAAARALHDAS--FKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGa-GiaGL~aA~~L~~~G--~~V~vlE~~~   61 (507)
                      ++|+|||| |..|.+.|+.|++.|  .+|.++|.+.
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~   36 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence            47999998 999999999999988  6899999865

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=90.15  E-value=0.29  Score=46.34  Aligned_cols=34  Identities=29%  Similarity=0.337  Sum_probs=30.7

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      .++|+|||+|..|.+.|..|++.|++|++++++.
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~   49 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG   49 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcCEEEEEECCh
Confidence            3579999999999999999999999999998753

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=90.09  E-value=0.35  Score=42.36  Aligned_cols=32  Identities=25%  Similarity=0.341  Sum_probs=29.5

Q ss_pred             CeEEEECc-cHHHHHHHHHHHhCCCeEEEEecC
Q 010542           29 PSVIVIGA-GMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        29 ~dv~IIGa-GiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ++|+|.|| |..|...+..|.++|++|.++.++
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~   33 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRD   33 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            36999998 999999999999999999999875

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=90.04  E-value=0.26  Score=50.14  Aligned_cols=35  Identities=17%  Similarity=0.361  Sum_probs=32.4

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ....|+|||+|.+|+-.|..|++.|.+|+|+++.+
T Consensus       185 ~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~  219 (542)
T 1w4x_A          185 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP  219 (542)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCC
Confidence            46789999999999999999999999999999865

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=89.91  E-value=0.16  Score=55.38  Aligned_cols=37  Identities=14%  Similarity=0.216  Sum_probs=33.6

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG   64 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~G   64 (507)
                      ..+|+|||+|..|+-+|..|++.|.+|+|+|+.+++.
T Consensus       284 gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~  320 (965)
T 2gag_A          284 GARIAVATTNDSAYELVRELAATGGVVAVIDARSSIS  320 (965)
T ss_dssp             CSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCC
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccc
Confidence            4679999999999999999999999999999987653

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=89.63  E-value=0.36  Score=43.43  Aligned_cols=33  Identities=27%  Similarity=0.400  Sum_probs=30.4

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      .. +++|||+|-+|-++++.|.+.|. +|+|+.++
T Consensus       108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~  141 (253)
T 3u62_A          108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRT  141 (253)
T ss_dssp             CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESC
T ss_pred             CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            34 89999999999999999999998 89999885

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=89.56  E-value=0.33  Score=44.77  Aligned_cols=33  Identities=18%  Similarity=0.411  Sum_probs=29.4

Q ss_pred             CCeEEEECccHHHHHHHHHHHhC--CCeEEEEecC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESR   60 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~   60 (507)
                      +++|.|||+|..|.+.|..|++.  |++|.+++++
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~   40 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRS   40 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSS
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCC
Confidence            46899999999999999999988  5789999874

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=89.53  E-value=0.26  Score=49.38  Aligned_cols=36  Identities=19%  Similarity=0.330  Sum_probs=30.8

Q ss_pred             CCCCeEEEECccHHHHH-HHHHHHhCCCeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVA-AARALHDASFKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~-aA~~L~~~G~~V~vlE~~~   61 (507)
                      ....+|.|||.|-+|++ +|..|.++|++|++.|...
T Consensus        20 ~~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~   56 (494)
T 4hv4_A           20 RRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAP   56 (494)
T ss_dssp             --CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ccCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCC
Confidence            34578999999999997 6999999999999999754

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=89.52  E-value=0.27  Score=46.17  Aligned_cols=35  Identities=20%  Similarity=0.202  Sum_probs=30.3

Q ss_pred             CCCeEEEEC-ccHHHHHHHHHHHhCC--CeEEEEecCC
Q 010542           27 RSPSVIVIG-AGMAGVAAARALHDAS--FKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIG-aGiaGL~aA~~L~~~G--~~V~vlE~~~   61 (507)
                      +.++|+||| +|..|.+.|+.|+++|  .+|.+++...
T Consensus         7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~   44 (326)
T 1smk_A            7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVN   44 (326)
T ss_dssp             -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            457899999 7999999999999998  7899999654

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=89.50  E-value=0.47  Score=43.81  Aligned_cols=33  Identities=27%  Similarity=0.432  Sum_probs=30.2

Q ss_pred             CeEEEECc-cHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIGA-GMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGa-GiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      |+|+|.|| |..|...+.+|.++|++|+++-+++
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~   34 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKP   34 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            57999998 9999999999999999999997754

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=89.49  E-value=0.3  Score=53.71  Aligned_cols=34  Identities=26%  Similarity=0.355  Sum_probs=31.1

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~   61 (507)
                      ..+|+|||||.+|+-+|..|++.|. +|+|+++.+
T Consensus       332 ~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          332 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            3489999999999999999999996 899999876

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=89.41  E-value=0.34  Score=47.94  Aligned_cols=36  Identities=28%  Similarity=0.453  Sum_probs=30.6

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhC--------------------CC-eEEEEecCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDA--------------------SF-KVVLLESRDR   62 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~--------------------G~-~V~vlE~~~~   62 (507)
                      ...+|+|||+|.+|+-+|..|++.                    |. +|+|+++.+.
T Consensus       146 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~  202 (456)
T 1lqt_A          146 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP  202 (456)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCCh
Confidence            457899999999999999999974                    54 8999998653

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=89.37  E-value=0.42  Score=45.48  Aligned_cols=35  Identities=23%  Similarity=0.272  Sum_probs=31.8

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      -....|+|+|+|-.|..+|..|.+.|.+|++.+.+
T Consensus       171 L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~  205 (364)
T 1leh_A          171 LEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVN  205 (364)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCC
Confidence            35678999999999999999999999999999864

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=89.34  E-value=0.47  Score=44.75  Aligned_cols=37  Identities=16%  Similarity=0.321  Sum_probs=32.9

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      -..++|.|||.|-.|...|..|+..|++|.+++++..
T Consensus       148 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~  184 (334)
T 2dbq_A          148 VYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRK  184 (334)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcc
Confidence            3467899999999999999999999999999998643

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=89.33  E-value=0.35  Score=44.51  Aligned_cols=33  Identities=21%  Similarity=0.407  Sum_probs=29.9

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      +...++|+|+|-.|.++|+.|++.| +|+|+.++
T Consensus       127 ~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~  159 (287)
T 1nvt_A          127 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANRT  159 (287)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCC-CEEEEECC
Confidence            3568999999999999999999999 99999875

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=89.32  E-value=0.26  Score=45.05  Aligned_cols=35  Identities=17%  Similarity=0.230  Sum_probs=31.4

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~   61 (507)
                      ...+++|||+|-+|-++|+.|++.|. +|+|+.++.
T Consensus       116 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  151 (277)
T 3don_A          116 EDAYILILGAGGASKGIANELYKIVRPTLTVANRTM  151 (277)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            45789999999999999999999998 899998753

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=89.30  E-value=0.5  Score=40.60  Aligned_cols=33  Identities=21%  Similarity=0.433  Sum_probs=30.5

Q ss_pred             CeEEEECc-cHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIGA-GMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGa-GiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +.|+|+|| |..|...+..|.++|++|.++.++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~   37 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence            67999999 9999999999999999999998853

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=89.28  E-value=0.16  Score=49.55  Aligned_cols=51  Identities=20%  Similarity=0.154  Sum_probs=34.9

Q ss_pred             HHHHHHHhc-cCCcccCceeE---------EEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          245 LPVINTLAK-GLDIRLGHRVT---------KITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       245 ~~l~~~l~~-g~~i~~~~~V~---------~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      +.+.+.+.+ |++++++++|+         +|..+++++.|++.+| +++||.||+|++...
T Consensus       176 ~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~~g-~i~a~~VV~A~G~~s  236 (405)
T 3c4n_A          176 LLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETR-QIRAGVIIVAAGAAG  236 (405)
T ss_dssp             HHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC-------CBCCE-EEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCCeEEEEECCc-EEECCEEEECCCccH
Confidence            344444443 88999999999         8888777787777777 899999999999764

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=89.28  E-value=0.41  Score=47.12  Aligned_cols=34  Identities=29%  Similarity=0.388  Sum_probs=31.7

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ....|+|+|+|-.|..+|..|+..|.+|.+.|.+
T Consensus       264 ~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~  297 (488)
T 3ond_A          264 AGKVAVVAGYGDVGKGCAAALKQAGARVIVTEID  297 (488)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            5678999999999999999999999999999875

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=88.79  E-value=0.073  Score=46.24  Aligned_cols=35  Identities=17%  Similarity=0.285  Sum_probs=31.4

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +.++|.|||+|-.|.+.|..|.+.|++|.+++++.
T Consensus        18 ~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   52 (201)
T 2yjz_A           18 KQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNP   52 (201)
Confidence            45679999999999999999999999999998754

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=89.16  E-value=0.6  Score=40.84  Aligned_cols=34  Identities=15%  Similarity=0.232  Sum_probs=29.8

Q ss_pred             CCeEEEECc-cHHHHHHHHHHH-hCCCeEEEEecCC
Q 010542           28 SPSVIVIGA-GMAGVAAARALH-DASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGa-GiaGL~aA~~L~-~~G~~V~vlE~~~   61 (507)
                      +..|+|.|| |-.|...|..|+ +.|++|.++.++.
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~   40 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQL   40 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCc
Confidence            345999995 999999999999 8999999998853

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=89.09  E-value=0.47  Score=43.16  Aligned_cols=34  Identities=26%  Similarity=0.322  Sum_probs=30.9

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      ....++|+|+|-+|-++|+.|++.|. +|+|+.++
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~  153 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRD  153 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            56789999999999999999999996 99999874

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=89.08  E-value=0.49  Score=43.29  Aligned_cols=34  Identities=21%  Similarity=0.386  Sum_probs=31.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      ....++|+|+|-+|-+.|+.|++.|. +|+|+.++
T Consensus       125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~  159 (281)
T 3o8q_A          125 KGATILLIGAGGAARGVLKPLLDQQPASITVTNRT  159 (281)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESS
T ss_pred             cCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECC
Confidence            56789999999999999999999996 99999875

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=89.07  E-value=0.4  Score=43.48  Aligned_cols=31  Identities=39%  Similarity=0.521  Sum_probs=29.6

Q ss_pred             eEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           30 SVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      +|+|||+|-.|.+.|..|.+.|.+|+|++++
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~  148 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRT  148 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            8999999999999999999999999999885

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=88.90  E-value=0.45  Score=43.49  Aligned_cols=34  Identities=21%  Similarity=0.320  Sum_probs=31.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      ...+++|||+|-+|-++|+.|++.|. +|+|+.++
T Consensus       121 ~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt  155 (282)
T 3fbt_A          121 KNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRN  155 (282)
T ss_dssp             TTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESC
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            46789999999999999999999998 89999875

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=88.81  E-value=0.52  Score=43.84  Aligned_cols=34  Identities=15%  Similarity=0.205  Sum_probs=31.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      ....++|+|+|-+|-++|+.|++.|. +|+|+.++
T Consensus       153 ~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          153 IGKKMTICGAGGAATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             cCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence            46789999999999999999999998 89999886

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=88.75  E-value=0.33  Score=44.58  Aligned_cols=34  Identities=26%  Similarity=0.483  Sum_probs=30.9

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      ...+|+|||+|-.|..+|.+|++.|. +++|+|..
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D   69 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYD   69 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            46789999999999999999999997 89999973

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=88.69  E-value=0.49  Score=45.41  Aligned_cols=34  Identities=21%  Similarity=0.262  Sum_probs=30.8

Q ss_pred             CCeEEEECc-cHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGA-GMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGa-GiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ++.|+|.|| |..|...+..|.++|++|.++.++.
T Consensus        28 ~k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~   62 (381)
T 1n7h_A           28 RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS   62 (381)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCC
Confidence            368999998 9999999999999999999998754

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=88.56  E-value=0.51  Score=44.20  Aligned_cols=34  Identities=26%  Similarity=0.513  Sum_probs=31.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      ...+|+|||+|=.|..+|.+|+..|. +++|++..
T Consensus        33 ~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D   67 (340)
T 3rui_A           33 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG   67 (340)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             hCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence            46889999999999999999999997 79999873

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=88.46  E-value=0.54  Score=43.03  Aligned_cols=35  Identities=17%  Similarity=0.210  Sum_probs=31.4

Q ss_pred             CCCCeEEEECcc-HHHHHHHHHHHhCCCeEEEEecC
Q 010542           26 ARSPSVIVIGAG-MAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGaG-iaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      -...+|+|||+| +.|..+|..|.+.|.+|+|+.+.
T Consensus       163 l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~  198 (301)
T 1a4i_A          163 IAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK  198 (301)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC
Confidence            467899999999 78999999999999999999653

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=88.46  E-value=0.56  Score=42.99  Aligned_cols=34  Identities=32%  Similarity=0.378  Sum_probs=30.8

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      ....++|+|+|-+|-++|+.|++.|. +|+|+.++
T Consensus       126 ~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~  160 (283)
T 3jyo_A          126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD  160 (283)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECC
Confidence            46789999999999999999999998 79999875

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=88.40  E-value=0.47  Score=42.65  Aligned_cols=34  Identities=32%  Similarity=0.432  Sum_probs=30.7

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      ...+|+|||+|-.|..+|..|++.|. +++|++..
T Consensus        27 ~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           27 LDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             HTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             hcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            35789999999999999999999997 79999874

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=88.35  E-value=0.39  Score=45.17  Aligned_cols=34  Identities=26%  Similarity=0.281  Sum_probs=30.1

Q ss_pred             CCCeEEEECc-cHHHHHHHHHHHhCCC-------eEEEEecC
Q 010542           27 RSPSVIVIGA-GMAGVAAARALHDASF-------KVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGa-GiaGL~aA~~L~~~G~-------~V~vlE~~   60 (507)
                      +.++|+|+|| |..|...+..|.++|+       +|.+++..
T Consensus         3 ~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~   44 (327)
T 1y7t_A            3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIP   44 (327)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCC
Confidence            4468999998 9999999999999986       89999874

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=88.33  E-value=0.57  Score=42.29  Aligned_cols=34  Identities=15%  Similarity=0.272  Sum_probs=30.8

Q ss_pred             CCCCeEEEECcc-HHHHHHHHHHHhCCCeEEEEec
Q 010542           26 ARSPSVIVIGAG-MAGVAAARALHDASFKVVLLES   59 (507)
Q Consensus        26 ~~~~dv~IIGaG-iaGL~aA~~L~~~G~~V~vlE~   59 (507)
                      -...+++|||+| +.|..+|..|.+.|.+|+|..+
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~  182 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHS  182 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECT
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeC
Confidence            467899999976 7999999999999999999976

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=88.28  E-value=0.53  Score=44.31  Aligned_cols=36  Identities=31%  Similarity=0.381  Sum_probs=32.3

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      -..++|.|||.|-.|...|..|+..|++|++++++.
T Consensus       153 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~  188 (330)
T 2gcg_A          153 LTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQ  188 (330)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSS
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            346789999999999999999999999999999754

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=88.23  E-value=0.56  Score=42.90  Aligned_cols=35  Identities=20%  Similarity=0.343  Sum_probs=31.0

Q ss_pred             CCCCeEEEECc-cHHHHHHHHHHHhCCCeEEEEecC
Q 010542           26 ARSPSVIVIGA-GMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGa-GiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      -...+++|||+ |+.|..+|..|.+.|.+|+|+.+.
T Consensus       163 l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~  198 (300)
T 4a26_A          163 MAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSG  198 (300)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            46789999995 579999999999999999999873

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=88.20  E-value=0.37  Score=44.86  Aligned_cols=32  Identities=25%  Similarity=0.486  Sum_probs=28.8

Q ss_pred             eEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Q 010542           30 SVIVIGAGMAGVAAARALHDASF-KVVLLESRD   61 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~   61 (507)
                      +|+|||||..|.+.|+.|+..|+ +|.++|.+.
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~   33 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTP   33 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSST
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCCh
Confidence            58999999999999999998888 699999853

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=88.17  E-value=0.4  Score=42.54  Aligned_cols=35  Identities=20%  Similarity=0.359  Sum_probs=30.8

Q ss_pred             CCCeEEEEC-ccHHHHHHHHHHHhCC-CeEEEEecCC
Q 010542           27 RSPSVIVIG-AGMAGVAAARALHDAS-FKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIG-aGiaGL~aA~~L~~~G-~~V~vlE~~~   61 (507)
                      +++.|+|.| +|..|...|..|+++| ++|+++.++.
T Consensus        22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~   58 (236)
T 3qvo_A           22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQP   58 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSG
T ss_pred             cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcCh
Confidence            456799999 5999999999999999 8999998854

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=88.15  E-value=0.59  Score=46.39  Aligned_cols=36  Identities=22%  Similarity=0.310  Sum_probs=32.5

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      .....|+|||+|..|+.+|..|...|.+|+++|.+.
T Consensus       272 l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~  307 (494)
T 3ce6_A          272 IGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDP  307 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            456789999999999999999999999999999853

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=88.10  E-value=0.66  Score=43.50  Aligned_cols=35  Identities=9%  Similarity=0.271  Sum_probs=31.5

Q ss_pred             CCCCeEEEECc-cHHHHHHHHHHHhCCCeEEEEecC
Q 010542           26 ARSPSVIVIGA-GMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGa-GiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      .+.+.|+|.|| |..|...+..|+++|++|.++.++
T Consensus        18 ~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~   53 (330)
T 2pzm_A           18 GSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNF   53 (330)
T ss_dssp             TTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            44578999998 999999999999999999999884

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=87.88  E-value=0.61  Score=45.09  Aligned_cols=36  Identities=25%  Similarity=0.238  Sum_probs=32.5

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      -....|+|||.|..|..+|..|...|.+|+++|.++
T Consensus       218 L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          218 FGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            356889999999999999999999999999999753

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=87.76  E-value=0.53  Score=45.04  Aligned_cols=34  Identities=35%  Similarity=0.526  Sum_probs=28.1

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      .++++|+|||||..|-.+|..|++. ++|+|.+.+
T Consensus        14 g~~mkilvlGaG~vG~~~~~~L~~~-~~v~~~~~~   47 (365)
T 3abi_A           14 GRHMKVLILGAGNIGRAIAWDLKDE-FDVYIGDVN   47 (365)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHTTT-SEEEEEESC
T ss_pred             CCccEEEEECCCHHHHHHHHHHhcC-CCeEEEEcC
Confidence            4567899999999999999999875 789988764

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=87.72  E-value=0.92  Score=43.55  Aligned_cols=36  Identities=25%  Similarity=0.473  Sum_probs=32.6

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      .+.++|+|||+|..|...|..+.+.|++|.+++...
T Consensus        10 ~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~   45 (377)
T 3orq_A           10 KFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSE   45 (377)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            456789999999999999999999999999998754

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=87.58  E-value=0.35  Score=45.41  Aligned_cols=42  Identities=24%  Similarity=0.257  Sum_probs=31.6

Q ss_pred             hcCCCCceEEeeccccC-----cCCchhhHHHHHHHHHHHHHHHHHH
Q 010542          438 LRIPVDNLFFAGEATSM-----SYPGSVHGAFSTGLMAAEDCRMRVL  479 (507)
Q Consensus       438 ~~~~~~~l~~aG~~~~~-----~~~g~~egA~~SG~~aA~~i~~~l~  479 (507)
                      ..+.++|||.+||....     .....+-+++.||++||+.|++.|.
T Consensus       279 ~~t~vpGv~aaGDaa~~v~g~~rmGp~~g~mi~SG~~AAe~I~~~la  325 (326)
T 3fpz_A          279 AYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFA  325 (326)
T ss_dssp             ECTTSBTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             eEECCCCEEEEchHhccccCCCcCchHHHHHHHHHHHHHHHHHHHhc
Confidence            45678999999997642     1112455678999999999999875

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=87.57  E-value=0.87  Score=42.73  Aligned_cols=35  Identities=23%  Similarity=0.314  Sum_probs=31.5

Q ss_pred             CCCCeEEEECc-cHHHHHHHHHHHhCCCeEEEEecC
Q 010542           26 ARSPSVIVIGA-GMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGa-GiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      .+.+.|+|.|| |..|...+..|.++|++|.++.++
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~   44 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS   44 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            45678999998 999999999999999999999874

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=87.53  E-value=0.65  Score=42.16  Aligned_cols=35  Identities=20%  Similarity=0.195  Sum_probs=31.2

Q ss_pred             CCCCeEEEECcc-HHHHHHHHHHHhCCCeEEEEecC
Q 010542           26 ARSPSVIVIGAG-MAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGaG-iaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      -...+++|||+| +.|..+|..|.+.|.+|+|+.+.
T Consensus       157 l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~  192 (288)
T 1b0a_A          157 TFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRF  192 (288)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCC
Confidence            467899999999 67999999999999999999653

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=87.52  E-value=0.63  Score=43.76  Aligned_cols=35  Identities=20%  Similarity=0.269  Sum_probs=32.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ..++|.|||.|-.|...|..|+..|++|.+++++.
T Consensus       163 ~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~  197 (333)
T 3ba1_A          163 SGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSK  197 (333)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            45689999999999999999999999999999864

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=87.45  E-value=0.6  Score=43.40  Aligned_cols=36  Identities=25%  Similarity=0.360  Sum_probs=31.9

Q ss_pred             CCCeEEEECc-cHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           27 RSPSVIVIGA-GMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        27 ~~~dv~IIGa-GiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ++++|+|.|| |..|...+..|.++|++|.++.++..
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            4678999999 99999999999999999999988543

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=87.43  E-value=0.58  Score=45.42  Aligned_cols=35  Identities=29%  Similarity=0.469  Sum_probs=31.6

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~   61 (507)
                      ....|+|||+|-.|..+|..|...|. +|++++++.
T Consensus       166 ~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~  201 (404)
T 1gpj_A          166 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY  201 (404)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             cCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            46789999999999999999999998 899998853

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=87.41  E-value=0.88  Score=43.88  Aligned_cols=36  Identities=22%  Similarity=0.415  Sum_probs=32.3

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ....+|+|||+|..|...|..+.+.|++|.+++.+.
T Consensus        12 ~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~   47 (389)
T 3q2o_A           12 LPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTK   47 (389)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            345789999999999999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	507
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	6e-49
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	1e-44
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	3e-32
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	2e-07
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	3e-29
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	7e-27
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	8e-23
d2dw4a3	109	d.16.1.5 (A:655-763) Lysine-specific histone demet	5e-22
d1b5qa2	112	d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea	2e-19
d2v5za2	112	d.16.1.5 (A:290-401) Monoamine oxidase B {Human (H	2e-18
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	4e-17
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	1e-16
d2iida2	113	d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan	4e-16
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	1e-13
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	2e-11
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	7e-09
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	1e-07
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	5e-07
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	5e-07
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	1e-06
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	1e-06
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	2e-06
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	2e-06
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	3e-06
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	5e-06
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	6e-06
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	1e-05
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	1e-05
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	1e-05
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	2e-05
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	2e-05
d1cjca2	230	c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase	2e-05
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	2e-05
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	3e-05
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	3e-05
d1m6ia2	137	c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF	3e-05
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	4e-05
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	4e-05
d1gesa2	116	c.3.1.5 (A:147-262) Glutathione reductase {Escheri	7e-05
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	1e-04
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	1e-04
d1aoga2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Trypa	1e-04
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	2e-04
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	2e-04
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	2e-04
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	3e-04
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	3e-04
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	4e-04
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	4e-04
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	4e-04
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	5e-04
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	5e-04
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	6e-04
d2cula1	230	c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {T	6e-04
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	6e-04
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	7e-04
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	7e-04
d3lada2	119	c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase	8e-04
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	8e-04
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	8e-04
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	9e-04
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	0.001
d1d7ya2	121	c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu	0.001
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	0.001
d1lqta2	239	c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct	0.002
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	0.002
d1feca2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Crith	0.002
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	0.002
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	0.003
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	0.003
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	0.003
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	0.003
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	0.004

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  172 bits (436), Expect = 6e-49
 Identities = 83/479 (17%), Positives = 156/479 (32%), Gaps = 56/479 (11%)

Query: 26  ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLH 85
            ++  VI+IG+G++G+AAAR L      V LLE+RDRVGGRV T     +  DLGA  + 
Sbjct: 3   KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVT 62

Query: 86  GVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDG 145
           G    NP+A V  ++ + L +                                 L++ +G
Sbjct: 63  G-LGGNPMAVVSKQVNMELAKIKQK---------------------------CPLYEANG 94

Query: 146 NQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISI-----VFDRRPELRLEGLA 200
             VP+E    V + F  +L+ T  +  + D ++   + +S+     V  +  E  ++   
Sbjct: 95  QAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQ 154

Query: 201 HKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLA----KGLD 256
            +  +  +   E       + ++LK   KE          V+    +             
Sbjct: 155 IEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRDITAEFLVKSKHRDL 214

Query: 257 IRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAI 316
             L     ++      ++  ++  +      V ++     +                + +
Sbjct: 215 TALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTL 274

Query: 317 DDLGVGIENKIIMHFDKVFWPN----VEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPA 372
                  ++        +   N    V             +    +      C ++ +  
Sbjct: 275 SLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNT 334

Query: 373 GQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYS-------- 424
              ++      D          LK+  P         +  W T A      +        
Sbjct: 335 RSTSQTFIYKCDAVLCTLPLGVLKQQPPAV--QFVPPLPEWKTSAVQRMVAAGSSGNDYD 392

Query: 425 -YDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERY 482
                            P+  LFFAGE T  +YP +VHGA  +GL  A     R+ +++
Sbjct: 393 LMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAG----RIADQF 447

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  159 bits (402), Expect = 1e-44
 Identities = 70/390 (17%), Positives = 136/390 (34%), Gaps = 23/390 (5%)

Query: 31  VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQ 89
           V+V+G G++G+AAA+ LHD+   VV+LE+RDRVGGR +T  +     VDLG S++     
Sbjct: 2   VVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGP--T 59

Query: 90  ENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVP 149
           +N +  +   LGL  Y+ +    +++    +S   +     +          +       
Sbjct: 60  QNRILRLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNF------ 113

Query: 150 QELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLC 209
              +  +G    S       + EE D     +    + +    +       +  +     
Sbjct: 114 WRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETH 173

Query: 210 RMEGWFAADAETISLKSWDKEELLPGGHGLMVRGY---LPVINTLAKGLDIRLGHRVTKI 266
            +   +          +        GG      G    +        G  ++L   V  I
Sbjct: 174 EVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYI 233

Query: 267 TRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENK 326
            +    V V     + + A  V+ A+P  +     I F P LP  +   I  +       
Sbjct: 234 DQTRENVLVETLNHEMYEAKYVISAIPPTLGMK--IHFNPPLPMMRNQMITRVFPPGILT 291

Query: 327 IIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCV-------LVYMPAGQLARDI 379
                 +     + F G  ++T+   S ++      G          +  +P  ++ +  
Sbjct: 292 QYGRVLRQPVDRIYFAG--TETATHWSGYMEGAVEAGERAAREILHAMGKIPEDEIWQSE 349

Query: 380 EKMSDEAAANFAFTQLKKILPDASSPIQYL 409
            +  D  A     T L++ LP     ++ +
Sbjct: 350 PESVDVPAQPITTTFLERHLPSVPGLLRLI 379

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score =  124 bits (310), Expect = 3e-32
 Identities = 76/328 (23%), Positives = 126/328 (38%), Gaps = 42/328 (12%)

Query: 29  PSVIVIGAGMAGVAAARALHDASFK-VVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGV 87
           P VIV+GAGM+G++AA+ L +A    +++LE+ D +GGR+H     G  V+LGA+W+ GV
Sbjct: 1   PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGV 60

Query: 88  CQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQ 147
                    ++ +   +  T    +   D D                 L   ++  DG  
Sbjct: 61  NGG-----KMNPIWPIVNSTLKLRNFRSDFD----------------YLAQNVYKEDGGV 99

Query: 148 VPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWY 207
             ++ V K  E  +S+ +  +K+            +I  +                +   
Sbjct: 100 YDEDYVQKRIELADSVEEMGEKLSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVD 159

Query: 208 LCRMEGWFAADAETISLKSWDKEELL-----PGGHGLMVRGYLPVINTLAKGLDIRL--- 259
             + +  FA      SL++                    RGY  V+  LA          
Sbjct: 160 YYKFDYEFAEPPRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKS 219

Query: 260 ----------GHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLP 309
                        V +I     GV V  E    + AD V+V+  LGVL++  I+F+P+LP
Sbjct: 220 GKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLP 279

Query: 310 DWKEAAIDDLGVGIENKIIMHFDKVFWP 337
            WK  AI        N+    +D++  P
Sbjct: 280 TWKVRAIYQFWPVGVNRY--EYDQLRAP 305

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 50.7 bits (119), Expect = 2e-07
 Identities = 19/38 (50%), Positives = 27/38 (71%)

Query: 435 YERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAE 472
           Y++LR PV  ++F GE TS  Y G VHGA+ +G+ +AE
Sbjct: 299 YDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAE 336

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score =  116 bits (290), Expect = 3e-29
 Identities = 77/387 (19%), Positives = 126/387 (32%), Gaps = 37/387 (9%)

Query: 8   NRQLRRALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67
                  L  + N  K  +    V+++GAGMAG++AA  L  A  +V +LE+ +R GGRV
Sbjct: 10  ENDYEEFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRV 69

Query: 68  HTDYS--FGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLK 125
            T  +   G+  +LG   L    +   +   I +  L L   S +N   +      R   
Sbjct: 70  RTYRNEEAGWYANLGPMRLPEKHRI--VREYIRKFDLRLNEFSQENDNAWYFIKNIRKKV 127

Query: 126 TVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAIS 185
             V                G    Q     +G+  E + +          +  S +  + 
Sbjct: 128 GEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLI 187

Query: 186 IVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYL 245
              D  P           +   L   +  +      I     D           +V G  
Sbjct: 188 KEGDLSPGAV-------DMIGDLLNEDSGYYVSF--IESLKHDDIFAYEKRFDEIVDGMD 238

Query: 246 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVE----GGKTFVADAVVVAVPLGVLKA 299
            +   + +     +    +V KI ++   V V  E       +  AD V+V      +  
Sbjct: 239 KLPTAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAV-- 296

Query: 300 RTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLH 359
           R IKF P L   K  A+  +          HF                 S G  YF   +
Sbjct: 297 RLIKFNPPLLPKKAHALRSVFTP---YQFQHFSDPLT-----------ASQGRIYFAGEY 342

Query: 360 KATGHCVLVY-MPAG-QLARDIEKMSD 384
            A  H  +   + +G + ARD+   S+
Sbjct: 343 TAQAHGWIDSTIKSGLRAARDVNLASE 369

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score =  109 bits (271), Expect = 7e-27
 Identities = 56/333 (16%), Positives = 100/333 (30%), Gaps = 15/333 (4%)

Query: 31  VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQE 90
           V V+G G++G+A A  L       VLLES  R+GG V T    G+ V+ G +        
Sbjct: 3   VAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPA 62

Query: 91  -NPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANL--CYALFDMDGNQ 147
              LA  ++  G                    R +     + + +++    A   + G  
Sbjct: 63  TRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLRVAGEL 122

Query: 148 VPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELR--LEGLAHKVLQ 205
             +     V E+  +  +     R       ++Q  I      +  +      L     +
Sbjct: 123 FSRRAPEGVDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMERE 182

Query: 206 WYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGL--DIRLGHRV 263
                +    A  A+  +         L G       G   +I+ LA  L     +G RV
Sbjct: 183 HRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVLIDALAASLGDAAHVGARV 242

Query: 264 TKITRHYIGVKVTVEGG---KTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLG 320
             + R   G ++ +E            VV+A P           +  L        +   
Sbjct: 243 EGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYNLGH 302

Query: 321 VGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCS 353
           +     I           +  L ++ +   G  
Sbjct: 303 LERVAAI-----DAALQRLPGLHLIGNAYKGVG 330

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 98.0 bits (242), Expect = 8e-23
 Identities = 60/352 (17%), Positives = 120/352 (34%), Gaps = 34/352 (9%)

Query: 31  VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQE 90
           V VIGAG++G+AAA  L      V + E+  + GG++ +    G   D GA+ +     +
Sbjct: 4   VAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGD 63

Query: 91  NPLAPVISRLGL------PLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMD 144
             +  +I  LGL      PL +     +      L       ++ S   +        ++
Sbjct: 64  --VTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQMLLE 121

Query: 145 GNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVL 204
                 + +++V ++ ES+     +   +   D  I   ++      P+      +   L
Sbjct: 122 PILWKNKKLSQVSDSHESVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPEL 181

Query: 205 QWYLCRMEGWFAADAETISLKSWDKEELLP---------GGHGLMVRGYLPVINTLAKGL 255
                R          +      +K++  P          G    + G   + + + K L
Sbjct: 182 WNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTDAICKDL 241

Query: 256 ---DIRLGHRVTKITR-----------HYIGVKVTVEGGKTFVADAVVVAVPLGVLKART 301
              ++RL  RV +++              I         +    DAV++  PL  +K+  
Sbjct: 242 REDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKS-- 299

Query: 302 IKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCS 353
           +K   R   +    I ++  G     ++        N+  L    +   G S
Sbjct: 300 MKIAKRGNPFLLNFIPEVY-GHNYDSVLDAIDKMEKNLPGLFYAGNHRGGLS 350

>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.7 bits (219), Expect = 5e-22
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 3/109 (2%)

Query: 320 GVGIENKIIMHFDKVFWP-NVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARD 378
           G G  NK+++ FD+VFW  +V   G V  T+                +L+ + AG+ A  
Sbjct: 1   GFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALVAGEAAGI 60

Query: 379 IEKMSDEAAANFAFTQLKKIL--PDASSPIQYLVSHWGTDANSLGSYSY 425
           +E +SD+         LK I        P + +VS W  D  + GSYSY
Sbjct: 61  MENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSY 109

>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 112

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 81.4 bits (200), Expect = 2e-19
 Identities = 28/109 (25%), Positives = 41/109 (37%), Gaps = 6/109 (5%)

Query: 322 GIENKIIMHFDKVFWP---NVEFLGVVSDTSYGCSYFLNLHKA-TGHCVLVYMPAGQLAR 377
            +  KI + F + FWP     EF    S        +    K      VL+     + +R
Sbjct: 3   AVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESR 62

Query: 378 DIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS 424
            IE+ SDE         L+K+ P  D       LV  W +D    G++S
Sbjct: 63  RIEQQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFS 111

>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.7 bits (193), Expect = 2e-18
 Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 5/109 (4%)

Query: 322 GIENKIIMHFDKVFWPNVEFLGVVSDTS--YGCSYFLNLHKATGHC-VLVYMPAGQLARD 378
           G   K I+++ + FW   ++ G +         +Y L+  K  G+   ++       AR 
Sbjct: 3   GSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARK 62

Query: 379 IEKMSDEAAANFAFTQLKKIL--PDASSPIQYLVSHWGTDANSLGSYSY 425
           + +++ E           K+L   +A  P+ Y   +W  +  S G Y+ 
Sbjct: 63  LARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTT 111

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 79.8 bits (196), Expect = 4e-17
 Identities = 37/231 (16%), Positives = 81/231 (35%), Gaps = 25/231 (10%)

Query: 31  VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQE 90
            I++G+G+ G   A  L   + KV+++E R+ +GG  +T+   G  +    + +     +
Sbjct: 4   YIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTNDK 63

Query: 91  NPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQ 150
                V   +    +  S                      L            + N   Q
Sbjct: 64  YIWDYVNDLVEFNRFTNS---------------------PLAIYKDKLFNLPFNMNTFHQ 102

Query: 151 ELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCR 210
               K  +  ++I+    K   +   +   ++AIS+      +L    +     + +   
Sbjct: 103 MWGVKDPQEAQNIINAQKKKYGDKVPENLEEQAISL---VGEDLYQALIKGYTEKQWGRS 159

Query: 211 MEGWFAADAETISLKSWDKEELLPGGH-GLMVRGYLPVINTLAKGLDIRLG 260
            +   A   + I ++           + G+ V GY  +I  + +G+D++LG
Sbjct: 160 AKELPAFIIKRIPVRFTFDNNYFSDRYQGIPVGGYTKLIEKMLEGVDVKLG 210

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.7 bits (192), Expect = 1e-16
 Identities = 35/283 (12%), Positives = 72/283 (25%), Gaps = 25/283 (8%)

Query: 31  VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQE 90
           VIV+G G+     +  L     KV+ ++ +D  GG   +            + +    +E
Sbjct: 8   VIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERE 67

Query: 91  ---------------------NPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVV 129
                                  L  ++    +  Y      S  Y              
Sbjct: 68  SKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYKVPANE 127

Query: 130 SLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFD 189
               ++    +F+    +   E ++   E   S  +  D  +   DE        +   +
Sbjct: 128 IEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGLGNSTKE 187

Query: 190 RRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVIN 249
                         LQ              ++++            G G + +G+  +  
Sbjct: 188 FIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKSPYLYPMYGLGELPQGFARLSA 247

Query: 250 TLAKGLDIRLGHRVTKITRHYIGVKVTV--EGGKTFVADAVVV 290
               G    L   + ++       K         TF A  V+ 
Sbjct: 248 IY--GGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIA 288

>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 72.1 bits (176), Expect = 4e-16
 Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 7/107 (6%)

Query: 325 NKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKM 382
            KI +     FW +    G    +D      Y+ N +   G  V++    G  A   + +
Sbjct: 6   TKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYPNHNFTNGVGVIIAYGIGDDANFFQAL 65

Query: 383 SDEAAANFAFTQLKKILPDA-----SSPIQYLVSHWGTDANSLGSYS 424
             +  A+  F  L  I         S     ++  W  D  ++G  +
Sbjct: 66  DFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKYAMGGIT 112

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.9 bits (169), Expect = 1e-13
 Identities = 37/277 (13%), Positives = 67/277 (24%), Gaps = 16/277 (5%)

Query: 31  VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHG---- 86
           VIV+G G+     +  +     KV+ ++     GG   +                     
Sbjct: 9   VIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETM 68

Query: 87  -------VCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYA 139
                  V           +L   L  T     + +     S V K   +  + +    A
Sbjct: 69  GRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEA 128

Query: 140 LFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGL 199
           L         +    K      +  +   K  E  D   +  R +   FD   ++     
Sbjct: 129 LASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDVIDFTG 188

Query: 200 AHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRL 259
               L      ++         I L S          +   + G   +    A+   I  
Sbjct: 189 HALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFARLSAIYG 248

Query: 260 GH-----RVTKITRHYIGVKVTVEGGKTFVADAVVVA 291
           G       V  I      V      G+      ++  
Sbjct: 249 GTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICD 285

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 62.5 bits (151), Expect = 2e-11
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSF---GFPVDLGASWLH 85
          ++++GAG +G    R L +   +V +++ RD +GG  +              G    H
Sbjct: 5  ILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFH 62

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 54.8 bits (131), Expect = 7e-09
 Identities = 17/65 (26%), Positives = 29/65 (44%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQE 90
          V+V+GAG +G+ A   L +    V ++E+   VGG  + +   G   D+ +        E
Sbjct: 10 VLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSE 69

Query: 91 NPLAP 95
            L  
Sbjct: 70 EVLQE 74

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 51.2 bits (121), Expect = 1e-07
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 30  SVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGV 87
            + +IGAG +G+  A+AL       +V L E R   GG  +   +    + + ++     
Sbjct: 6   KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILT 65

Query: 88  CQENPLAPVISRLGLPLYR 106
            +       +     PLYR
Sbjct: 66  TEPIVGPAALPVYPSPLYR 84

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 48.3 bits (114), Expect = 5e-07
 Identities = 15/55 (27%), Positives = 22/55 (40%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLH 85
          V++IG G  G  AA       FK   +E R  +GG             L +S ++
Sbjct: 6  VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY 60

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 48.9 bits (115), Expect = 5e-07
 Identities = 13/37 (35%), Positives = 23/37 (62%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67
          VIVIG G +G+ AA    +    V+LL+  +++G ++
Sbjct: 5  VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKL 41

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 47.6 bits (112), Expect = 1e-06
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69
           I+IGAG AG+  A  L      V + ++  ++G ++  
Sbjct: 7  NIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILM 45

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (111), Expect = 1e-06
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67
          V++IG G AG  AA       F    +E R ++GG  
Sbjct: 8  VVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTC 44

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 47.3 bits (111), Expect = 2e-06
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFP 76
          V+V+G+G AG +AA +  D+  KV+L+E    +GG  +   + G  
Sbjct: 19 VVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGG--NAKLAAGGM 62

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 47.3 bits (111), Expect = 2e-06
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFP 76
          V++IG+G AG+AAA +  DA  KV+LLE     GG  +T  + G  
Sbjct: 26 VVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGG--NTKLAAGGM 69

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 46.5 bits (109), Expect = 3e-06
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFG 74
          V+V+GAG AG  A+ A   A   V+L++     GG  ++  S G
Sbjct: 22 VLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGG--NSMISAG 63

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 45.3 bits (106), Expect = 5e-06
 Identities = 15/62 (24%), Positives = 24/62 (38%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQE 90
          V+V+G G  G +AA A  D   KV ++E    +GG             L  + +    + 
Sbjct: 9  VVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRH 68

Query: 91 NP 92
            
Sbjct: 69 LA 70

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 45.9 bits (107), Expect = 6e-06
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66
          VIV+GAG  G+AA   L     K +L+++ D     
Sbjct: 6  VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTN 41

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 45.3 bits (106), Expect = 1e-05
 Identities = 49/283 (17%), Positives = 79/283 (27%), Gaps = 30/283 (10%)

Query: 31  VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFG--FPVDLGASWLHGVC 88
            +VIG+G  G  AA  L  A     ++E     G    T  S G  F   L         
Sbjct: 10  ALVIGSGYGGAVAALRLTQAGIPTQIVEM----GRSWDTPGSDGKIFCGMLNPDKRSMWL 65

Query: 89  QENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQV 148
            +    PV + +G  + ++      + D +  S +       +   +L      +   + 
Sbjct: 66  ADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRN 125

Query: 149 PQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYL 208
             E +    ++ E   K   +       +   Q      F+     +      K  Q   
Sbjct: 126 YFEEILPSVDSNEMYNKYFPRANTGLGVNNIDQA----WFESTEWYKFARTGRKTAQRSG 181

Query: 209 CRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAK----------GLDIR 258
                           K    +    G  G ++ G      +L K           L I 
Sbjct: 182 FTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQAAATGKLTIT 241

Query: 259 LGHRVTKITR----------HYIGVKVTVEGGKTFVADAVVVA 291
             HRVTK+              I  +  V   K   AD V  A
Sbjct: 242 TLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFA 284

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 11/65 (16%), Positives = 18/65 (27%), Gaps = 1/65 (1%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQE 90
          +++IG G  G  AA          VL+E    +GG             +  +        
Sbjct: 8  LLIIGGGPGGYVAAIRAGQLGIPTVLVE-GQALGGTCLNIGCIPSKALIHVAEQFHQASR 66

Query: 91 NPLAP 95
               
Sbjct: 67 FTEPS 71

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 28 SPS---VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67
          SP+   + V+G  ++G+ AA  L DA   V + E   +     
Sbjct: 1  SPTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGF 43

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66
           +VIG G+ G A A  L   +    L E    +GGR
Sbjct: 7  AVVIGGGIIGSAIAYYLAKENKNTALFE-SGTMGGR 41

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 43.8 bits (102), Expect = 2e-05
 Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLH 85
           I IG G  G+A+         K  L+E    +GG           V   A+ + 
Sbjct: 5  YIAIGGGSGGIASINRAAMYGQKCALIE-AKELGGTCVNVGCVPKKVMWHAAQIR 58

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.8 bits (102), Expect = 2e-05
 Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 28 SPSVIVIGAGMAGVAAARAL--HDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLH 85
          +P + V+G+G AG   A+ L  H +   V + E +    G V    +   P         
Sbjct: 1  TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTF 60

Query: 86 GVCQENP 92
               + 
Sbjct: 61 TQTARSD 67

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFG 74
           +VIG G+AG+ AA A        ++L          H+  + G
Sbjct: 8  SLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRS--HSAAAQG 49

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 43.5 bits (101), Expect = 3e-05
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66
          +IVIG G  G+AAAR     + KV L+E + R+GG 
Sbjct: 4  LIVIGGGSGGMAAARRAARHNAKVALVE-KSRLGGT 38

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 14/122 (11%)

Query: 31  VIVIGAGMAGVAAARAL-HDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQ 89
           V+V+GAG AG++AA  +  + + +V ++E     GG             LG      +  
Sbjct: 36  VVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAW----------LGGQLFSAMIV 85

Query: 90  ENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSL---IQANLCYALFDMDGN 146
             P    +  +G+          V +     S ++  ++      +   +      + GN
Sbjct: 86  RKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGN 145

Query: 147 QV 148
           +V
Sbjct: 146 RV 147

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 3e-05
 Identities = 7/41 (17%), Positives = 17/41 (41%)

Query: 252 AKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAV 292
            +G+ +     V  +      + + ++ G+    D +V AV
Sbjct: 95  REGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAV 135

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 42.9 bits (100), Expect = 4e-05
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQE 90
           +V+GAG  G  AA        KV ++E +  +GG             + AS  +   + 
Sbjct: 6  TLVVGAGPGGYVAAIRAAQLGQKVTIVE-KGNLGGVCLNVGCIPSKALISASHRYEQAKH 64

Query: 91 NP 92
          + 
Sbjct: 65 SE 66

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.4 bits (101), Expect = 4e-05
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66
          V +IGAG +G+   + LH A    V+LE +      
Sbjct: 5  VAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVL 40

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (93), Expect = 7e-05
 Identities = 7/42 (16%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 252 AKGLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAV 292
           A+G  +        + ++  G + + +E G++   D ++ A+
Sbjct: 74  AEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAI 115

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 8/42 (19%), Positives = 19/42 (45%)

Query: 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69
          +P +++IGAG+ G   A  L    +  + +  +  +     +
Sbjct: 1  TPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGS 42

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 41.2 bits (95), Expect = 1e-04
 Identities = 15/58 (25%), Positives = 20/58 (34%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVC 88
          VIVIGAG  G  AA        K  L+E      G+     +      + +  L    
Sbjct: 6  VIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSS 63

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 252 AKGLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAV 292
           A G+ I       K+  +  G K VT E GK    D V++A+
Sbjct: 76  ANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAI 117

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 11/46 (23%), Positives = 19/46 (41%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFP 76
          +I+IG G  G+AAA+       KV++L+         +        
Sbjct: 6  LIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCV 51

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65
           +VIG G  G+A+AR   +   +  ++E   ++GG
Sbjct: 6  YLVIGGGSGGLASARRAAELGARAAVVE-SHKLGG 39

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 11/47 (23%), Positives = 19/47 (40%)

Query: 20 NAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66
          N  +   R    I IG G AG   +  L     + ++++    +GG 
Sbjct: 34 NVDENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGS 80

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 9/38 (23%), Positives = 18/38 (47%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68
          V+V+G+G+ G+++A  L    + V +L           
Sbjct: 9  VVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQ 46

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 40.7 bits (94), Expect = 3e-04
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLE--SRDRVGGRVHTDYSFGFPVDLGASWL 84
           +VIG G     +A  L +A  + ++LE        G     +      D  +SW 
Sbjct: 5  AVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWF 60

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 40.3 bits (93), Expect = 4e-04
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFG 74
          V++IG+G AG++ A  L D   +V++L       G   T Y+ G
Sbjct: 10 VLIIGSGAAGLSLALRLADQ-HQVIVLSKGPVTEG--STFYAQG 50

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFG 74
           +VIGAG AG+ AA  +  +     LL          HT  + G
Sbjct: 10 AVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS--HTVSAQG 51

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 4e-04
 Identities = 29/156 (18%), Positives = 50/156 (32%), Gaps = 4/156 (2%)

Query: 31  VIVIGAGMAGVAAARAL--HDASFKVVLLESRDRV-GGRVHTDYSFGFPVDLGASWLHGV 87
            ++IG G A  AAAR++   D   +V+++     +   R        F  D   +     
Sbjct: 7   FLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRF 66

Query: 88  CQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQ 147
            Q N     I       Y ++ D   + +  +        VV L   +    L D     
Sbjct: 67  KQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVL-TGKKVVQLDVRDNMVKLNDGSQIT 125

Query: 148 VPQELVTKVGEAFESILKETDKVREEHDEDMSIQRA 183
             + L+   G      L +T  +  + D       A
Sbjct: 126 YEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNA 161

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 39.5 bits (91), Expect = 5e-04
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS 72
          V+VIGAG+ G++ A  +H+    V+          R     +
Sbjct: 3  VVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTT 44

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 31 VIVIGAGMAGVAAARAL------HDASFKVVLLESRDRVGGRVHTDYSF 73
          V+++GAG AG++AA  L      H+   +V L+E    +G    +    
Sbjct: 35 VVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACL 83

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.7 bits (91), Expect = 6e-04
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDR 62
          +++ GAG+ G++ A ALH A    V L     
Sbjct: 4  ILIAGAGIGGLSCALALHQAGIGKVTLLESSS 35

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} Length = 230

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLE-SRDRVGG 65
          V+++GAG +G   A  L     +V LL  S D V  
Sbjct: 5  VLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMM 40

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score = 39.9 bits (92), Expect = 6e-04
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 6/57 (10%)

Query: 31 VIVIGAGMAG-VAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHG 86
           I+ G G+ G   AAR   + +  V+++ES     G   +D             + G
Sbjct: 20 YIIAGGGLTGLTTAARLTENPNISVLVIES-----GSYESDRGPIIEDLNAYGDIFG 71

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 39.6 bits (91), Expect = 7e-04
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLE 58
          V+++G+G  G   AR L  A +KV + +
Sbjct: 7  VVIVGSGPIGCTYARELVGAGYKVAMFD 34

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score = 39.5 bits (91), Expect = 7e-04
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 6/57 (10%)

Query: 31 VIVIGAGMAG-VAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHG 86
           I+ G G+ G   AA+   +   KV+++E      G   ++             + G
Sbjct: 27 YIIAGGGLTGLTVAAKLTENPKIKVLVIE-----KGFYESNDGAIIEDPNAYGQIFG 78

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 119

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 37.4 bits (86), Expect = 8e-04
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 254 GLDIRLGHRVTKITRHYIGVKVTVE---GGKTFVADAVVVAV 292
           GL I LG RVT        V V      G K+   D ++VAV
Sbjct: 77  GLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAV 118

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 39.2 bits (90), Expect = 8e-04
 Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 4/39 (10%)

Query: 31 VIVIGAGMAG----VAAARALHDASFKVVLLESRDRVGG 65
          +++IG G +G      AA        KV L+E       
Sbjct: 24 ILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERS 62

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (90), Expect = 8e-04
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 31 VIVIGAGMAGVAAARAL--HDASFKVVLLESRDRVGGRVHT 69
          VI++GAG +G++AA  +  +    KV ++ES    GG    
Sbjct: 53 VIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL 93

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 38.2 bits (87), Expect = 9e-04
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63
          A    V+V+GAG+A V+    L  A ++ ++    D  
Sbjct: 1  ALKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEA 38

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 29 PSVIVIGAGMAGVAAARALHDASF--KVVLLESRDRVGGRVHTDYSFGFPVD 78
            V+V+G G  G  AA+ +  A    +V L+E          ++   G    
Sbjct: 3  RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRK 54

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 252 AKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAV 292
           A+G+D+R    VT          V ++ G    AD VVV +
Sbjct: 84  AQGVDLRFERSVTGSVDG----VVLLDDGTRIAADMVVVGI 120

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 12/40 (30%), Positives = 16/40 (40%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTD 70
          ++VIGAG  G+ AA        K V +     V G     
Sbjct: 6  LVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFS 45

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 7/48 (14%)

Query: 27 RSPSVIVIGAGMAGVAAARAL-------HDASFKVVLLESRDRVGGRV 67
          R   + ++G+G +   AA +L        D    V +LE      G V
Sbjct: 1  RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLV 48

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDR 62
          V+++G+G AG AAA        +  L+  R  
Sbjct: 4  VLIVGSGPAGAAAAIYSARKGIRTGLMGERFG 35

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 257 IRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAV 292
           +R      K+T++  G + V  E G     D V++A+
Sbjct: 79  VRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAI 115

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 31 VIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVGGRVHTDYSFG 74
          + ++GAG AG+ AA A   A+   K+ L+     +    HT  + G
Sbjct: 8  LAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS--HTVAAEG 51

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 36.7 bits (84), Expect = 0.003
 Identities = 13/53 (24%), Positives = 25/53 (47%)

Query: 24 GQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFP 76
          G  +   ++++G+G AG  AA     A+ + VL+   ++ G    T     +P
Sbjct: 1  GTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWP 53

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLE 58
           I++GAG  G+ AA  L +A  KV+LLE
Sbjct: 5  YIIVGAGPGGIIAADRLSEAGKKVLLLE 32

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68
          V+++G G+AGV  A  L  + ++  +    D      H
Sbjct: 6  VVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHH 43

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 31 VIVIGAGMAGVAAARALHDASFKV--VLLESRDRVGG 65
          ++++G G AG  AA     +  +   V +   D +GG
Sbjct: 4  IVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGG 40

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 25 QARSPSVIVIGAGMAGVAAARALHDASFK-VVLLESRDRVGGRVHTDYSFGFPVDLGASW 83
          +A S  + ++GAG A ++ A  L    +  + + E ++ VGG   ++           ++
Sbjct: 1  EAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNF 60

Query: 84 LHGVCQENP 92
             + ++  
Sbjct: 61 EIELMKDLG 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	507
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.97
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.96
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.94
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.94
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.89
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.89
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.85
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.81
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	99.76
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	99.71
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.61
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.53
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.49
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.45
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.42
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.42
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.34
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.33
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.28
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.25
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.24
d2v5za2	112	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.15
d2dw4a3	109	Lysine-specific histone demethylase 1, LSD1 {Human	99.1
d2iida2	113	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.09
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.07
d1b5qa2	112	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.02
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.01
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.01
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.99
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.97
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.88
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.88
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.86
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.86
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.85
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.85
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.84
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.83
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.83
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.82
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.82
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.81
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.81
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.8
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.79
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.79
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.75
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.73
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.72
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.71
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.7
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.67
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.63
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	98.62
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.62
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.62
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.6
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.59
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.58
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.55
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.54
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.54
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.53
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.5
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.49
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.49
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.48
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.48
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.47
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.45
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.44
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.43
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.38
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.35
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.31
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.3
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.27
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.25
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.23
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.22
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.18
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.1
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.09
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.07
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.0
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.99
d2ivda2	108	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	97.97
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	97.87
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.76
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.75
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.66
d1seza2	112	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	97.43
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.4
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.4
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.34
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.29
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	97.27
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.23
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.19
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.82
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	96.72
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.7
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.69
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.62
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.55
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.44
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.44
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.31
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.3
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.28
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.26
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	96.15
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.14
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.09
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.05
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	95.64
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.61
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.6
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.49
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	95.36
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.33
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.33
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	95.23
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.12
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.02
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	95.0
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.0
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	95.0
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	94.99
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	94.87
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	94.86
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	94.85
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	94.63
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	94.59
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.52
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	94.46
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	94.41
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	94.27
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	94.26
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	94.17
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	94.06
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	94.02
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.84
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	93.8
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	93.55
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	93.52
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	93.44
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	93.35
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.23
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.18
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	92.94
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	92.88
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	92.28
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	92.26
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	92.05
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	92.01
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	91.68
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	91.58
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	91.25
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	91.25
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	91.15
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	90.63
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	90.62
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	90.5
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	90.38
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	90.27
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	90.03
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	90.02
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	89.83
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	89.71
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	89.64
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	89.46
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.4
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	89.0
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	88.98
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	88.76
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	87.87
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	87.81
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	87.65
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	87.28
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	87.13
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	86.52
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	86.21
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	86.02
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	85.9
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	85.66
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	84.87
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	84.83
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	83.89
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	83.35
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	83.26
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	83.16
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	83.0
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	82.55
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	82.4
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	82.37
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	82.34
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	82.18
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	81.94
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	81.87
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	81.15
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	81.08
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	81.01
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	80.63
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	80.31
d1iowa1	96	D-Ala-D-Ala ligase, N-domain {Escherichia coli, ge	80.1

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.9e-29  Score=244.89  Aligned_cols=255  Identities=23%  Similarity=0.291  Sum_probs=155.4

Q ss_pred             eEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccC-CCeeeecCCceeeCCCCCCchHHHHHhcCCCeeeec
Q 010542           30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS-FGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTS  108 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~  108 (507)
                      ||+|||||++||+||++|+++|++|+||||++++||+++|... +|+.+|.|++++++  .++.+.++++++|++.....
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~--~~~~~~~l~~~lgl~~~~~~   78 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGP--TQNRILRLAKELGLETYKVN   78 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEECCTTTSCEESSCCEECT--TCHHHHHHHHHTTCCEEECC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceeeEEECCCCcEEeCCceEeCC--CChHHHHHHHHcCCcceecc
Confidence            8999999999999999999999999999999999999998764 68899999999974  45678999999999876554


Q ss_pred             CCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHH-hhcC---------CCCC
Q 010542          109 GDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKV-REEH---------DEDM  178 (507)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------~~~~  178 (507)
                      ......+..+..                 ...+..................+.+........ ....         ....
T Consensus        79 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (383)
T d2v5za1          79 EVERLIHHVKGK-----------------SYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNM  141 (383)
T ss_dssp             CSSEEEEEETTE-----------------EEEECSSSCCCCSHHHHHHHHHHHHHHHHHHTTSCTTCGGGSTTHHHHHTS
T ss_pred             CccceEEecCcc-----------------cccccccccchhhhhhhhhHHHHHHHHHHhhhhcccccccchhhhhhhhhh
Confidence            433333222111                 111111111111121111111222222211111 0000         0123


Q ss_pred             cHHHHHHHHhccChhHHhhhhHHHHHHHHHHhhhccccCCcccccccccC------------ccccccCCccccccchHH
Q 010542          179 SIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWD------------KEELLPGGHGLMVRGYLP  246 (507)
Q Consensus       179 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~------------~~~~~~~~~~~~~~G~~~  246 (507)
                      ++.+++......       .....+...+   ............+.....            ......+....+.+|++.
T Consensus       142 ~~~~~~~~~~~~-------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (383)
T d2v5za1         142 TMKELLDKLCWT-------ESAKQLATLF---VNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQ  211 (383)
T ss_dssp             BHHHHHHHHCSS-------HHHHHHHHHH---HHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCTHH
T ss_pred             HHHHHHHHhccc-------hHHHHHHHHh---hhhhhccccchhhHHHHHHHHHhhcccccccccccCcceeeeccchhH
Confidence            444443322110       0111111111   111122222222211111            011122334567889999


Q ss_pred             HHHHHhc--cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHH
Q 010542          247 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAA  315 (507)
Q Consensus       247 l~~~l~~--g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~  315 (507)
                      +.+++.+  |++|++|++|++|..++++|.|++.+|++++||+||+|+|+..+.+  +.+.|++|....+.
T Consensus       212 ~~~~l~~~~g~~i~~~~~v~~I~~~~~~v~v~~~~g~~~~ad~vI~a~p~~~~~~--~~~~p~l~~~~~~~  280 (383)
T d2v5za1         212 VSERIMDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMK--IHFNPPLPMMRNQM  280 (383)
T ss_dssp             HHHHHHHHHGGGEEESCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGGGGG--SEEESCCCHHHHHH
T ss_pred             HHHHHHHHcCCeEEecCcceEEEecCCeEEEEECCCCEEECCEEEECCCHHHHhh--CccCCCCCHHHHHH
Confidence            9999875  8899999999999999999999999999999999999999988763  45667777655443

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.96  E-value=2.2e-28  Score=237.02  Aligned_cols=274  Identities=22%  Similarity=0.240  Sum_probs=150.2

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccC--CCeeeecCCceeeCCCCCCchHHHHHhcCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS--FGFPVDLGASWLHGVCQENPLAPVISRLGL  102 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~--~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~  102 (507)
                      ..+.++|+|||||++||+||++|+++|++|+|||+++++||++.|...  .|+.+|.|+++++.  ....+.++++++++
T Consensus        27 ~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~g~~~d~G~~~~~~--~~~~~~~l~~~~~~  104 (370)
T d2iida1          27 TSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPE--KHRIVREYIRKFDL  104 (370)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEET--TCHHHHHHHHHTTC
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCeeEEEecCCCCceeccCceeecC--ccHHHHHHHHHhCC
Confidence            345679999999999999999999999999999999999999988654  47899999998863  45568899999998


Q ss_pred             CeeeecC--CCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHH----HhhcCCC
Q 010542          103 PLYRTSG--DNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDK----VREEHDE  176 (507)
Q Consensus       103 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  176 (507)
                      +......  .....+..+..........   ....................   ........+......    .......
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (370)
T d2iida1         105 RLNEFSQENDNAWYFIKNIRKKVGEVKK---DPGLLKYPVKPSEAGKSAGQ---LYEESLGKVVEELKRTNCSYILNKYD  178 (370)
T ss_dssp             CEEEECSCCTTSEEEETTEEEEHHHHHH---CGGGGCCCCCGGGTTCCHHH---HHHHHTHHHHHHHHHSCHHHHHHHHT
T ss_pred             ccceeeccCCceEEecCCccccchhhhh---hhhhhhhhhhhhhhhhhhHH---HHHHHHHHHHHHHHhhhhhhhhhhcc
Confidence            8654322  2222222221110000000   00000000000000000111   111111111111111    0001112


Q ss_pred             CCcHHHHHHHHhccChhHHhhhhHHHHHHHHHHhhhccccCCcccccccccCccccccCCccccccchHHHHHHHhc--c
Q 010542          177 DMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAK--G  254 (507)
Q Consensus       177 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~--g  254 (507)
                      ..+..+++.....         ........+................................+.+|++.++++|.+  |
T Consensus       179 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g  249 (370)
T d2iida1         179 TYSTKEYLIKEGD---------LSPGAVDMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAMYRDIQ  249 (370)
T ss_dssp             TSBHHHHHHHTSC---------CCHHHHHHHHHHTTCGGGTTSBHHHHHHHHHHHTTCCCEEEETTCTTHHHHHHHHHTG
T ss_pred             chhHHHHHHHhcc---------ccHHHHHHhhccccccchhhhHHHhhhhhhhhhccccccccchhhHHHHHHHHHHhcC
Confidence            2333333332111         1111111111110000000000000000001111233445678899999999865  8


Q ss_pred             CCcccCceeEEEEeeCCcEEEEEc----CCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHH
Q 010542          255 LDIRLGHRVTKITRHYIGVKVTVE----GGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAID  317 (507)
Q Consensus       255 ~~i~~~~~V~~I~~~~~~v~v~~~----~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~  317 (507)
                      ++|++|++|++|..++++++|++.    +++++.||+||+|+|+..+.  .+.+.|+||+...+++.
T Consensus       250 ~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~--~i~~~p~l~~~~~~ai~  314 (370)
T d2iida1         250 DKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVR--LIKFNPPLLPKKAHALR  314 (370)
T ss_dssp             GGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHT--TSEEESCCCHHHHHHHH
T ss_pred             CccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCCHHHHh--hCccCCCCCHHHHHHHH
Confidence            899999999999999999876643    34589999999999998876  34567777776665553

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.94  E-value=3e-26  Score=215.86  Aligned_cols=321  Identities=30%  Similarity=0.430  Sum_probs=176.2

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCC-eEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCC--CchHHHHHhcCC-Ce
Q 010542           29 PSVIVIGAGMAGVAAARALHDASF-KVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQE--NPLAPVISRLGL-PL  104 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~--~~~~~l~~~lg~-~~  104 (507)
                      +||+|||||++||+||++|+++|+ +|+||||++++||+++|...+|+.+|.|+++++.....  ..+.++...... ..
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKLRN   80 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETTEEEESSCCEEEEESSSSCCTHHHHHHTTSCCCE
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEEEeccCCEEEecCCeEEeccchhhhhHHHhhhcccccccc
Confidence            589999999999999999999996 79999999999999999999999999999988643221  223333332222 11


Q ss_pred             eeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhh----cCCCCCcH
Q 010542          105 YRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVRE----EHDEDMSI  180 (507)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  180 (507)
                      ........                        ..........................+......+..    ......+.
T Consensus        81 ~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (347)
T d1b5qa1          81 FRSDFDYL------------------------AQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKLSATLHASGRDDMSI  136 (347)
T ss_dssp             EECCCTTG------------------------GGCEEETTSSBCCHHHHHHHHHHHHHHHHHHHHHHHTSCTTSTTCCBH
T ss_pred             cccccccc------------------------ccceecccccccchhhhhhhhhhhHHHHHHHHHHHhhhccccccchhh
Confidence            11111000                        011222233334433333322222222222222211    11222233


Q ss_pred             HHHHHHHhccChhHHhhhhHHHHHHHHHHhhhccccCCcccccccccCccccccCC---ccccccchHHHHHHH------
Q 010542          181 QRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGG---HGLMVRGYLPVINTL------  251 (507)
Q Consensus       181 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~---~~~~~~G~~~l~~~l------  251 (507)
                      .............  ...........+.............................   ......+........      
T Consensus       137 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (347)
T d1b5qa1         137 LAMQRLNEHQPNG--PATPVDMVVDYYKFDYEFAEPPRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLK  214 (347)
T ss_dssp             HHHHHHHHTSSSS--CCSHHHHHHHHHHTHHHHSSCTTTBBSTTTSSCHHHHHHCSEEEEECCTTCTTHHHHHHHHTTSC
T ss_pred             hhhhccccccccc--cccccccchhhhccchhhcccchhhhhhhhhhhhhhhhccccccccccccccceeecccccchhH
Confidence            2222211111100  00000011111111000000000000000000000000000   000111111111111      


Q ss_pred             -----hc--cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcce
Q 010542          252 -----AK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIE  324 (507)
Q Consensus       252 -----~~--g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~  324 (507)
                           .+  +..++++++|..|...++.+.|++.+|+.+.+|++++++|+..+....+.+.|.||.....++.+..+...
T Consensus       215 ~~~~~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~~~~~~~~  294 (347)
T d1b5qa1         215 TDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGV  294 (347)
T ss_dssp             BCTTTCCBCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSCBTTC
T ss_pred             HHHHHhhhcccccccccccccccccCccEEEEECCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHHhcCCccc
Confidence                 11  45899999999999999999999999999999999999999888776677778887766665543221000


Q ss_pred             eEEEEEccCCCCCCCccceeecCCCCceeeeeccccCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhCCCCCC
Q 010542          325 NKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASS  404 (507)
Q Consensus       325 ~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p~~~~  404 (507)
                                                                                .                     
T Consensus       295 ----------------------------------------------------------~---------------------  295 (347)
T d1b5qa1         295 ----------------------------------------------------------N---------------------  295 (347)
T ss_dssp             ----------------------------------------------------------C---------------------
T ss_pred             ----------------------------------------------------------c---------------------
Confidence                                                                      0                     


Q ss_pred             CcEEEeccCCCCCCCCcccccCCCCCchHHHHHhcCCCCceEEeeccccCcCCchhhHHHHHHHHHHHHHHHHHHHH
Q 010542          405 PIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER  481 (507)
Q Consensus       405 ~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~l~~~  481 (507)
                                                 ....+.++++.++||++||+++..++++++||+.||..||+.|+..+.++
T Consensus       296 ---------------------------~~~~~~~~~~~~~v~~~GD~~~~~~~~~~~gA~~sG~~aA~~l~~~~~~~  345 (347)
T d1b5qa1         296 ---------------------------RYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQKK  345 (347)
T ss_dssp             ---------------------------HHHHHHHHCCBTTEEECSGGGCSSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ---------------------------ccchhhcccccCCEEEEEccccCcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence                                       00112233467899999999988777899999999999999999988765

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.1e-24  Score=210.67  Aligned_cols=90  Identities=38%  Similarity=0.572  Sum_probs=78.6

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCe
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL  104 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~  104 (507)
                      ..++.+|||||||+|||+||++|+++|++|+|||+++++|||++|.+.+|+.+|+|++++++. .++.+.++++++|++.
T Consensus         2 ~~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~t~~~~g~~~d~G~~~i~~~-~~~~~~~l~~~lgl~~   80 (449)
T d2dw4a2           2 TKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGL-GGNPMAVVSKQVNMEL   80 (449)
T ss_dssp             SSCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEETTEEEESSCCEECCS-BTCHHHHHHHHHTCCE
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEEEEEeCCEEEECCCEEECCC-CCcHHHHHHHHcCCcc
Confidence            356788999999999999999999999999999999999999999999999999999999754 4557889999999997


Q ss_pred             eeecCCCcccc
Q 010542          105 YRTSGDNSVLY  115 (507)
Q Consensus       105 ~~~~~~~~~~~  115 (507)
                      .+........+
T Consensus        81 ~~~~~~~~~~~   91 (449)
T d2dw4a2          81 AKIKQKCPLYE   91 (449)
T ss_dssp             EECCCCCCEEC
T ss_pred             eecCCCceEEe
Confidence            76655544443

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.89  E-value=3.7e-23  Score=197.98  Aligned_cols=75  Identities=32%  Similarity=0.447  Sum_probs=68.8

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCee
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY  105 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~  105 (507)
                      ++|+|||||++||+||++|+++|++|+|||+++++||+++|...+|+.+|.|+++++.  .+..+.++++++++...
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~d~G~~~~~~--~~~~~~~~~~~~~~~~~   76 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTE--SEGDVTFLIDSLGLREK   76 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCC--CSHHHHHHHHHTTCGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceEEeccCCEEEecCceEEeC--CCHHHHHHHHHhCCccc
Confidence            6799999999999999999999999999999999999999999999999999999873  45678899999988643

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.89  E-value=5.8e-24  Score=202.68  Aligned_cols=74  Identities=32%  Similarity=0.460  Sum_probs=68.1

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCe
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL  104 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~  104 (507)
                      +||+|||||++||+||++|+++|++|+||||++++||+++|...+|+.+|.|++++..  .+..+.++++++++..
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~g~~~d~G~~~~~~--~~~~~~~l~~~~~~~~   74 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLD--REPATRALAAALNLEG   74 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETTEEEESSCCCEET--TCHHHHHHHHHTTCGG
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceEEEEeeCCEEEecCceEEec--CCHHHHHHHHHhcccc
Confidence            5899999999999999999999999999999999999999999999999999999974  4556888999998864

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=3e-21  Score=178.68  Aligned_cols=48  Identities=23%  Similarity=0.315  Sum_probs=45.0

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS   72 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~   72 (507)
                      |.++|||||||||++||+||++|+++|++|+||||++++||+++|...
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~t~~~   49 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTL   49 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECH
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceEEeec
Confidence            677999999999999999999999999999999999999999988643

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.76  E-value=1.7e-18  Score=162.90  Aligned_cols=218  Identities=12%  Similarity=0.218  Sum_probs=135.6

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEecc---CCCeeeecCCceeeCCCCCCchHHHHHhcCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY---SFGFPVDLGASWLHGVCQENPLAPVISRLGLP  103 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~---~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~  103 (507)
                      ++++|+|||||++||+||++|+++|++|+|+|+++++||+++|..   .++..++.|+|.++.  ....+.++++.+.- 
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~t~~~~~~g~~~~~~Gphif~t--~~~~v~~~~~~~~~-   77 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHT--DNETVWNYVNKHAE-   77 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEE--SCHHHHHHHHTTSC-
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeeeEEEecCCCceEEecCceeecC--ccHHHHHHHHHhhh-
Confidence            368899999999999999999999999999999999999998864   457899999999973  44567777776542 


Q ss_pred             eeeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHH------HHHHHHHHHHHHHHhhcCCCC
Q 010542          104 LYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKV------GEAFESILKETDKVREEHDED  177 (507)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~  177 (507)
                      ..+..........+....                   +     +.........      ......+...  .......+.
T Consensus        78 ~~~~~~~~~~~~~g~~~~-------------------~-----P~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  131 (314)
T d2bi7a1          78 MMPYVNRVKATVNGQVFS-------------------L-----PINLHTINQFFSKTCSPDEARALIAE--KGDSTIADP  131 (314)
T ss_dssp             EEECCCCEEEEETTEEEE-------------------E-----SCCHHHHHHHTTCCCCHHHHHHHHHH--HSCCSCSSC
T ss_pred             hhhhccccceeecceeec-------------------c-----CccHHHHHHhcccccchHHHHHHHHH--hhhcccCCc
Confidence            222111111111111100                   0     0000000000      0111111111  111223345


Q ss_pred             CcHHHHHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCcc--------ccccCC-ccccccchHHH
Q 010542          178 MSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKE--------ELLPGG-HGLMVRGYLPV  247 (507)
Q Consensus       178 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~--------~~~~~~-~~~~~~G~~~l  247 (507)
                      .++++++..           .+++++.+.++.++ ...|+.++++++.......        .++... .+++++|+.++
T Consensus       132 ~n~ee~~~~-----------~~G~~lye~f~~pYt~K~Wg~~~~~L~~~~~~r~p~r~~~d~~yf~d~~q~~Pk~Gyt~~  200 (314)
T d2bi7a1         132 QTFEEEALR-----------FIGKELYEAFFKGYTIKQWGMQPSELPASILKRLPVRFNYDDNYFNHKFQGMPKCGYTQM  200 (314)
T ss_dssp             CBHHHHHHH-----------HHCHHHHHHHTHHHHHHHHSSCGGGSBGGGCCSCCCCSSSCCCSCCCSEEEEETTHHHHH
T ss_pred             hhhhHHHHH-----------hchhhhHHhhcCcchhhhhccCCcccchhhhhccceeccccccccchhhheeecccHHHH
Confidence            567776553           46677777777775 5678888888877665421        112222 25788999999


Q ss_pred             HHHHhc--cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhc
Q 010542          248 INTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLK  298 (507)
Q Consensus       248 ~~~l~~--g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~  298 (507)
                      ++.|.+  +++|.+|+.+.              +++...+|+||.|.|++.+-
T Consensus       201 ~e~mL~~~~i~v~ln~~~~--------------~~~~~~~d~vI~TgpiD~~f  239 (314)
T d2bi7a1         201 IKSILNHENIKVDLQREFI--------------VEERTHYDHVFYSGPLDAFY  239 (314)
T ss_dssp             HHHHHCSTTEEEEESCCCC--------------GGGGGGSSEEEECSCHHHHT
T ss_pred             HHHHHhCCCCeeecccccc--------------ccccccceeEEEeccHHHHh
Confidence            999975  55677766531              23455689999999999864

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=4.9e-17  Score=151.89  Aligned_cols=218  Identities=17%  Similarity=0.274  Sum_probs=132.3

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeee-ecCCceeeCCCCCCchHHHHHhcCCCeee
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPV-DLGASWLHGVCQENPLAPVISRLGLPLYR  106 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~-d~G~~~~~~~~~~~~~~~l~~~lg~~~~~  106 (507)
                      |+||+|||||+|||+||++|+++|++|+|+|+++++||+|+|....|+.+ +.|+|+++.  ....+.+++.++..- .+
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t~~~~g~~~~~~G~h~f~t--~~~~v~~~~~~~~~~-~~   77 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHT--NDKYIWDYVNDLVEF-NR   77 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEETTEEEETTSCCCEEE--SCHHHHHHHHTTSCB-CC
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEEeCcCCEEEeecCcEEEEe--cchHHHHHhhccccc-ee
Confidence            68999999999999999999999999999999999999999988889865 789999873  455677777765321 11


Q ss_pred             ecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHH--HHHH-----HHHHHHHHHHHHHHhhcCCCCCc
Q 010542          107 TSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQEL--VTKV-----GEAFESILKETDKVREEHDEDMS  179 (507)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  179 (507)
                      ...+....+.                          .....+|...  +...     .+....+.... ..........+
T Consensus        78 ~~~~~~~~~~--------------------------~~~~~~P~~~~~i~~l~~~~~~~~~~~~i~~~-~~~~~~~~~~n  130 (298)
T d1i8ta1          78 FTNSPLAIYK--------------------------DKLFNLPFNMNTFHQMWGVKDPQEAQNIINAQ-KKKYGDKVPEN  130 (298)
T ss_dssp             CCCCCEEEET--------------------------TEEEESSBSHHHHHHHHCCCCHHHHHHHHHHH-TTTTCCCCCCS
T ss_pred             eccccceeee--------------------------ceeEEecccHHHHHHhhhhhcHHHHHHHHHHH-Hhhcccccchh
Confidence            1111111111                          1111111111  1100     11111111111 11112234456


Q ss_pred             HHHHHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCc--------cccccC-CccccccchHHHHH
Q 010542          180 IQRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDK--------EELLPG-GHGLMVRGYLPVIN  249 (507)
Q Consensus       180 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~--------~~~~~~-~~~~~~~G~~~l~~  249 (507)
                      ++++..           ..+++.+.+.++.++ ...|+.++.+++......        ..++.. ..+.+++|+..+.+
T Consensus       131 ~ee~~~-----------~~~G~~lye~ff~~Yt~K~Wg~~p~eL~~~~~~ripir~~~~~~yf~d~~q~~pk~Gyt~~~~  199 (298)
T d1i8ta1         131 LEEQAI-----------SLVGEDLYQALIKGYTEKQWGRSAKELPAFIIKRIPVRFTFDNNYFSDRYQGIPVGGYTKLIE  199 (298)
T ss_dssp             HHHHHH-----------HHHHHHHHHHHTHHHHHHHHSSCGGGSCTTSSCCCCBCSSSCCCSCCCSEEECBTTCHHHHHH
T ss_pred             HHHHHH-----------HhhchhHHHhcccchhhhccccCcccccccccccccccccccchhhhcceEEEEecccchHHH
Confidence            777654           346667777776665 457777777776543321        111222 23578999999999


Q ss_pred             HHhccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhh
Q 010542          250 TLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL  297 (507)
Q Consensus       250 ~l~~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~  297 (507)
                      .+.++.+|++++.-.     ..+      +.....+|.||.|.|+..+
T Consensus       200 ~~l~~~~i~l~~~~~-----~~~------~~~~~~~~~vi~tg~iD~~  236 (298)
T d1i8ta1         200 KMLEGVDVKLGIDFL-----KDK------DSLASKAHRIIYTGPIDQY  236 (298)
T ss_dssp             HHHTTSEEECSCCGG-----GSH------HHHHTTEEEEEECSCHHHH
T ss_pred             HHhcCCceEeccccc-----chh------hhhhccCCeEEEcCcHHHh
Confidence            999988887775311     110      1112357889999988864

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.61  E-value=2.6e-15  Score=139.29  Aligned_cols=52  Identities=17%  Similarity=0.201  Sum_probs=43.9

Q ss_pred             hHHHHHHHh-ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          244 YLPVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       244 ~~~l~~~l~-~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      +..+.+.+. .|++++++++|++|..++++|.|+|++| ++.||+||+|++...
T Consensus       153 ~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~~g-~i~a~~VViAaG~~s  205 (281)
T d2gf3a1         153 IRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWN  205 (281)
T ss_dssp             HHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGH
T ss_pred             ccccccccccccccccCCcEEEEEEEECCEEEEEECCc-EEEcCEEEECCCCcc
Confidence            344455444 3899999999999999999999999988 799999999998764

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.53  E-value=1.1e-14  Score=134.63  Aligned_cols=51  Identities=20%  Similarity=0.148  Sum_probs=42.6

Q ss_pred             HHHHHHHh-ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          245 LPVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       245 ~~l~~~l~-~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      ..+.+.+. .|++|+.+++|++|+.+++.+.|+|.+| ++.||+||+|+++..
T Consensus       155 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~vV~AaG~~s  206 (276)
T d1ryia1         155 KAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWS  206 (276)
T ss_dssp             HHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGT
T ss_pred             hHHHHHHHHcCCEEecceEEEeEEeecceEEEecCCe-EEEcCEEEECCCccH
Confidence            34444443 3899999999999999988999999888 899999999998764

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.49  E-value=1.3e-13  Score=125.28  Aligned_cols=42  Identities=31%  Similarity=0.508  Sum_probs=39.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      ++|||+|||||++||+||+.|+++|++|+||||++.+||+..
T Consensus         1 M~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~   42 (251)
T d2i0za1           1 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLA   42 (251)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCccee
Confidence            479999999999999999999999999999999999998753

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.45  E-value=8e-14  Score=126.76  Aligned_cols=42  Identities=26%  Similarity=0.500  Sum_probs=39.0

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      .+.+||+|||||++||+||+.|+++|++|+||||++.+|+.+
T Consensus         2 ~~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~   43 (253)
T d2gqfa1           2 SQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKI   43 (253)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCce
Confidence            457999999999999999999999999999999999998754

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.42  E-value=2.6e-13  Score=127.07  Aligned_cols=52  Identities=25%  Similarity=0.173  Sum_probs=42.5

Q ss_pred             hHHHHHHHh-ccCCcccCceeEEEEeeCCcEE-EEEcCCcEEEcCEEEEecCchh
Q 010542          244 YLPVINTLA-KGLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       244 ~~~l~~~l~-~g~~i~~~~~V~~I~~~~~~v~-v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      +..+.+... .|++|+.+++|++|..+++++. |.|.+| +++||+||+|++...
T Consensus       151 ~~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~s  204 (305)
T d1pj5a2         151 VQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWG  204 (305)
T ss_dssp             HHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             hhhHHhhhhcccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchhH
Confidence            344444443 4999999999999999999876 888777 899999999998764

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.42  E-value=3.8e-13  Score=124.54  Aligned_cols=53  Identities=28%  Similarity=0.369  Sum_probs=44.6

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVD   78 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d   78 (507)
                      ++..||+|||||++||++|++|+++|++|+|||+++.+||.-+....+|...|
T Consensus         5 ~~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d   57 (298)
T d1w4xa1           5 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCD   57 (298)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceec
Confidence            56899999999999999999999999999999999999996544444454443

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.34  E-value=2.3e-12  Score=122.14  Aligned_cols=53  Identities=26%  Similarity=0.376  Sum_probs=42.6

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCC--CeEEEEecCCCCCceeEeccCCCeeee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVGGRVHTDYSFGFPVD   78 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~~~GG~~~s~~~~g~~~d   78 (507)
                      +..++|+|||||+|||+||..|+++|  .+|+||||++.+||.-......|...+
T Consensus         2 ~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~   56 (335)
T d2gv8a1           2 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLP   56 (335)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCC
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccC
Confidence            45788999999999999999998876  599999999999996544443444333

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.33  E-value=6.9e-12  Score=117.33  Aligned_cols=42  Identities=36%  Similarity=0.585  Sum_probs=38.9

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      .+++||+|||||++||+||+.|+++|.+|+|+||.+..||.+
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s   55 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNA   55 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTG
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence            457999999999999999999999999999999999888854

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.28  E-value=1.9e-11  Score=114.94  Aligned_cols=43  Identities=42%  Similarity=0.598  Sum_probs=39.4

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ..++.||+|||||++||+||+.|+++|++|+|+||.+..||.+
T Consensus        20 ~~et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s   62 (322)
T d1d4ca2          20 VKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNT   62 (322)
T ss_dssp             CCEECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTG
T ss_pred             CCCcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcc
Confidence            3457999999999999999999999999999999999988854

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.25  E-value=4.8e-11  Score=108.70  Aligned_cols=44  Identities=11%  Similarity=-0.003  Sum_probs=40.2

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV  296 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  296 (507)
                      .+..+++++.|+++...+++++++++||+++++|.+|.|.+...
T Consensus       109 ~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~s  152 (265)
T d2voua1         109 GPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGAS  152 (265)
T ss_dssp             CSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred             ccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEeccccccc
Confidence            36789999999999999999999999999999999999998654

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.24  E-value=3.3e-11  Score=112.94  Aligned_cols=42  Identities=33%  Similarity=0.525  Sum_probs=39.0

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      .+++||+|||||++||+||+.|+++|.+|+|+||.+..||.+
T Consensus        17 ~e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S   58 (317)
T d1qo8a2          17 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNS   58 (317)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTG
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCch
Confidence            567999999999999999999999999999999999888853

>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=7.2e-11  Score=92.13  Aligned_cols=106  Identities=17%  Similarity=0.280  Sum_probs=85.3

Q ss_pred             CCcceeEEEEEccCCCCCCCccceeecCCC---CceeeeeccccCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHH
Q 010542          320 GVGIENKIIMHFDKVFWPNVEFLGVVSDTS---YGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLK  396 (507)
Q Consensus       320 ~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~  396 (507)
                      +++..+|+++.|+++||++.++.|......   .....+.......+..+|++++.++.+..+..++++++++.+++.|+
T Consensus         1 pmG~~~Kv~l~f~~~FW~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vL~~~~~G~~a~~~~~ls~~e~~~~~l~~L~   80 (112)
T d2v5za2           1 PLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYA   80 (112)
T ss_dssp             CBCCEEEEEEECSSCGGGGGTEEEEEEECSTTCSCSEEEECCCTTSCSCEEEEEEETHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             CchheEEEEEEcCCCCCCCCCceeeEEecCCCCcEEEEccCcCccCCCcEEEEEeCcHHHHHHHhCCHHHHHHHHHHHHH
Confidence            457889999999999999877766543222   22233444444556789999999999999999999999999999999


Q ss_pred             HhCCC--CCCCcEEEeccCCCCCCCCccccc
Q 010542          397 KILPD--ASSPIQYLVSHWGTDANSLGSYSY  425 (507)
Q Consensus       397 ~~~p~--~~~~~~~~~~~w~~~~~~~g~~~~  425 (507)
                      ++||.  +..|..+.+++|..+|++.|+|+.
T Consensus        81 ~~~g~~~~~~~~~~~~~~W~~dp~~~GsYs~  111 (112)
T d2v5za2          81 KVLGSLEALEPVHYEEKNWCEEQYSGGCYTT  111 (112)
T ss_dssp             HHHTCGGGGCCSEEEEEEGGGCTTTCSSSCB
T ss_pred             HHhCccccCCccEEEEcccCCCCccCccccc
Confidence            99975  456889999999999999999974

>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.9e-10  Score=89.18  Aligned_cols=105  Identities=30%  Similarity=0.477  Sum_probs=81.4

Q ss_pred             CcceeEEEEEccCCCCCCCccc-eeecCCCCceeeeeccccCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhC
Q 010542          321 VGIENKIIMHFDKVFWPNVEFL-GVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL  399 (507)
Q Consensus       321 ~~~~~~~~l~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~  399 (507)
                      ++..+|+++.|+++||++.... +.+.........+.+.....+..+|++++.+..+..+..++++++++.++++|++++
T Consensus         2 ~G~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~~~~G~~a~~~~~l~~~~~~~~~l~~L~~~~   81 (109)
T d2dw4a3           2 FGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIF   81 (109)
T ss_dssp             ECCCEEEEEECSSCCSCTTCSEEEECCSSSTTTTTTCEEECC--CCEEEEEECHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred             CChhEEEEEEECCCCCCCCCCEeEEEecCCCCceEEeeccCCCCCCEEEEEECcHHHHHHHhcCHHHHHHHHHHHHHHHh
Confidence            4678899999999999876443 333333222233333344567789999999999999999999999999999999999


Q ss_pred             CC--CCCCcEEEeccCCCCCCCCccccc
Q 010542          400 PD--ASSPIQYLVSHWGTDANSLGSYSY  425 (507)
Q Consensus       400 p~--~~~~~~~~~~~w~~~~~~~g~~~~  425 (507)
                      +.  .+.|..+.+.+|..+|++.|+|++
T Consensus        82 ~~~~~~~~~~~~~~~W~~dp~~~GsYSy  109 (109)
T d2dw4a3          82 GSSAVPQPKETVVSRWRADPWARGSYSY  109 (109)
T ss_dssp             CTTTCCCCSEEEECCTTTCTTTSSSCEE
T ss_pred             CccccCcccEEEEeccCCCCccCEecCC
Confidence            75  346789999999999999999864

>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.09  E-value=5.9e-11  Score=92.80  Aligned_cols=105  Identities=18%  Similarity=0.281  Sum_probs=83.8

Q ss_pred             CCcceeEEEEEccCCCCCCCcccee-e-cCCCCceeeeeccccCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHH
Q 010542          320 GVGIENKIIMHFDKVFWPNVEFLGV-V-SDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKK  397 (507)
Q Consensus       320 ~~~~~~~~~l~~~~~~~~~~~~~g~-~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~  397 (507)
                      +|++++|+++.|+++||++.+..|. . .+......++.+...+.+..+|++++.++.+..+..++++++++.++++|++
T Consensus         1 hy~~~~Kv~l~f~~~FW~~~g~~~~~~~td~~~~~~~~~~~~~~~~~~vL~~~~~g~~a~~~~~l~~e~~~~~~l~~L~~   80 (113)
T d2iida2           1 HYRSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYPNHNFTNGVGVIIAYGIGDDANFFQALDFKDCADIVFNDLSL   80 (113)
T ss_dssp             CEECEEEEEEEESSCGGGGGTCCSSEEEESSTTCEEECCSSCCTTSCEEEEEEEEHHHHHTTTTSCHHHHHHHHHHHHHH
T ss_pred             CCccEEEEEEEcCCCCCCCcCCEeeEEEeCCCceEEEeCCCCCCCCceEEEEEeCCchhHHHHcCCHHHHHHHHHHHHHH
Confidence            4778999999999999997765543 2 2322333445555566778899999999999999999999999999999999


Q ss_pred             hCCCCCC-----CcEEEeccCCCCCCCCcccc
Q 010542          398 ILPDASS-----PIQYLVSHWGTDANSLGSYS  424 (507)
Q Consensus       398 ~~p~~~~-----~~~~~~~~w~~~~~~~g~~~  424 (507)
                      +||....     +..+.+.+|..+|++.|+|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~W~~dp~~~GaYS  112 (113)
T d2iida2          81 IHQLPKKDIQSFCYPSVIQKWSLDKYAMGGIT  112 (113)
T ss_dssp             HHTCCHHHHHHHEEEEEEEEGGGCTTTCSSEE
T ss_pred             HcCCcccccccccCeEEEeecCCCCCccccCC
Confidence            9986432     35677889999999999986

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=6.8e-11  Score=99.41  Aligned_cols=43  Identities=28%  Similarity=0.502  Sum_probs=40.1

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ..+.++|+|||||++||+||++|+++|++|+|||+.+++||.+
T Consensus        40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l   82 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQF   82 (179)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTH
T ss_pred             CCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceE
Confidence            4567899999999999999999999999999999999999965

>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.02  E-value=9.7e-10  Score=85.50  Aligned_cols=103  Identities=24%  Similarity=0.359  Sum_probs=79.4

Q ss_pred             cceeEEEEEccCCCCCCCccc-eee--cCCC-CceeeeeccccCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHH
Q 010542          322 GIENKIIMHFDKVFWPNVEFL-GVV--SDTS-YGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKK  397 (507)
Q Consensus       322 ~~~~~~~l~~~~~~~~~~~~~-g~~--~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~  397 (507)
                      +..+|++|.|+++||++.... +..  .... ....+........+..+|++++.++.+..+..++++++++.+++.|++
T Consensus         3 G~~~Ki~l~F~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~~~~G~~a~~~~~l~~~~~~~~~l~~L~~   82 (112)
T d1b5qa2           3 AVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRK   82 (112)
T ss_dssp             ECEEEEEEECSSCCSCCSTTCSEEEEECSSTTSSCEEEECTTTSTTCCEEEEEEEHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             ccEEEEEEEECCCCCCCCCCEEEEEeecCCCCeeEEEEEcccCCCCCCEEEEEeCcHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            567899999999999865322 222  1211 222222223345677899999999999999999999999999999999


Q ss_pred             hCCC--CCCCcEEEeccCCCCCCCCcccc
Q 010542          398 ILPD--ASSPIQYLVSHWGTDANSLGSYS  424 (507)
Q Consensus       398 ~~p~--~~~~~~~~~~~w~~~~~~~g~~~  424 (507)
                      +||+  .+.|..+.+++|..+|++.|+|+
T Consensus        83 ~~~~~~~~~~~~~~~t~W~~dp~~~GsYS  111 (112)
T d1b5qa2          83 MFPGKDVPDATDILVPRWWSDRFYKGTFS  111 (112)
T ss_dssp             HCTTSCCCCCSEEECCCTTTCTTTSSSEE
T ss_pred             HhCcccccCCCEEEeccCCCCCCccccCC
Confidence            9975  45678999999999999999986

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.01  E-value=2.9e-09  Score=100.28  Aligned_cols=40  Identities=25%  Similarity=0.345  Sum_probs=36.1

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR   66 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~   66 (507)
                      +.+||+|||||++||+||++|+++|.+|+|+||....||.
T Consensus         4 ~~~DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~~~g~   43 (336)
T d2bs2a2           4 QYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSH   43 (336)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSG
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCc
Confidence            4589999999999999999999999999999997766653

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=1.8e-09  Score=100.42  Aligned_cols=40  Identities=28%  Similarity=0.346  Sum_probs=35.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCce
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGR   66 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~   66 (507)
                      .++||+|||+|+|||+||..++++  |.+|+|+||....||.
T Consensus         4 ~~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~   45 (311)
T d1kf6a2           4 FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSH   45 (311)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSG
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCc
Confidence            358999999999999999999986  6799999998777664

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=3.2e-09  Score=82.74  Aligned_cols=41  Identities=12%  Similarity=0.268  Sum_probs=36.4

Q ss_pred             ccCCcccCceeEEEEeeCC-cEEEEEcCCcEEEcCEEEEecC
Q 010542          253 KGLDIRLGHRVTKITRHYI-GVKVTVEGGKTFVADAVVVAVP  293 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~-~v~v~~~~g~~~~ad~VI~a~p  293 (507)
                      +|+++++++.|++|..+++ .+++++++|+++.+|.||+|++
T Consensus        75 ~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          75 EGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             HSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             CCCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence            4999999999999998765 5789999999999999999974

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.97  E-value=1.7e-09  Score=99.21  Aligned_cols=43  Identities=23%  Similarity=0.224  Sum_probs=37.1

Q ss_pred             cCCcccCceeEEEEeeCCcEEEEEcCC----cEEEcCEEEEecCchh
Q 010542          254 GLDIRLGHRVTKITRHYIGVKVTVEGG----KTFVADAVVVAVPLGV  296 (507)
Q Consensus       254 g~~i~~~~~V~~I~~~~~~v~v~~~~g----~~~~ad~VI~a~p~~~  296 (507)
                      ++.+.++++|+.+...++++.+++.+|    +++.+|.||.|-+.+.
T Consensus       120 ~~~~~~~~~v~~~~~~~~~v~v~~~~g~~~~~~~~ad~vi~ADG~~S  166 (288)
T d3c96a1         120 QQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHS  166 (288)
T ss_dssp             TTSEEESEEEEEEEEETTEEEEEEEETTSCEEEEEESEEEECCCTTC
T ss_pred             CeeeecCcEEEEeeecCCcEEEEEEcCCCCeEEEeeceeeccCCccc
Confidence            778999999999999999998887776    3789999999988654

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.88  E-value=5.5e-10  Score=106.75  Aligned_cols=60  Identities=25%  Similarity=0.380  Sum_probs=45.7

Q ss_pred             ccccccchhhhcccCCCCCCCCCeEEEECccHHHHHHHHHHHh------CCCeEEEEecCCCCCcee
Q 010542            7 SNRQLRRALCYSNNAGKGQARSPSVIVIGAGMAGVAAARALHD------ASFKVVLLESRDRVGGRV   67 (507)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~dv~IIGaGiaGL~aA~~L~~------~G~~V~vlE~~~~~GG~~   67 (507)
                      ..|+.+.........+. ..+.+||+|||||+|||+||+.|+|      +|++|+||||+..+|...
T Consensus        12 ~~~~~~~~~~~~~~m~~-~~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~   77 (380)
T d2gmha1          12 IYPRDQDKRWEGVNMER-FAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHT   77 (380)
T ss_dssp             TSCTTSCGGGSSCCCCC-CEEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTC
T ss_pred             ccccccCccccccCccc-ccccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCc
Confidence            44444444443333332 4557999999999999999999998      799999999999988754

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.88  E-value=1.3e-08  Score=81.24  Aligned_cols=37  Identities=32%  Similarity=0.542  Sum_probs=34.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ...+|+|||||+.|+-+|..|++.|++|+|+|+++++
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~   70 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV   70 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccc
Confidence            3578999999999999999999999999999998765

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.86  E-value=5.1e-10  Score=102.54  Aligned_cols=68  Identities=24%  Similarity=0.404  Sum_probs=49.7

Q ss_pred             CCCeEEEECccHHHHHHHHHHHh-CCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCe
Q 010542           27 RSPSVIVIGAGMAGVAAARALHD-ASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL  104 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~-~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~  104 (507)
                      ..+||+|||||++||+||++|++ .|++|+|||+++.+||.+++   .|+.+..   ..    .......+++++++..
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~---~g~~~~~---~~----~~~~~~~~~~~~g~~~  100 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWL---GGQLFSA---MI----VRKPAHLFLDEIGVAY  100 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTC---CSTTCCC---EE----EETTTHHHHHHHTCCC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceee---cCEEcCH---HH----HhhhHHHHHHHcCCce
Confidence            47999999999999999999987 59999999999999997643   2222211   11    1123456677777763

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.86  E-value=3.6e-10  Score=100.66  Aligned_cols=43  Identities=33%  Similarity=0.538  Sum_probs=40.5

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      +.++|||+|||||++||+||.+|++.|++|+|+|+++.+||.|
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~   44 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTC   44 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHH
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEe
Confidence            4568999999999999999999999999999999999999976

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.85  E-value=2.3e-08  Score=78.08  Aligned_cols=41  Identities=37%  Similarity=0.404  Sum_probs=35.9

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCC---cEEEcCEEEEecC
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAVP  293 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g---~~~~ad~VI~a~p  293 (507)
                      +|++++++++|++|+.+++++++++.++   +++.||.||+|++
T Consensus        76 ~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          76 QGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             TTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             cCceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence            4889999999999999999988887665   4789999999974

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.85  E-value=1.7e-08  Score=78.80  Aligned_cols=36  Identities=31%  Similarity=0.518  Sum_probs=33.6

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ..+++|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~i   57 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI   57 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEeccee
Confidence            478999999999999999999999999999998765

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.84  E-value=8.1e-10  Score=97.46  Aligned_cols=42  Identities=31%  Similarity=0.524  Sum_probs=39.5

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      +++|||+|||||++||+||.++++.|.+|+|+|+++.+||.|
T Consensus         1 ~~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~   42 (221)
T d1dxla1           1 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTC   42 (221)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCee
Confidence            357999999999999999999999999999999999999965

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.83  E-value=9.1e-09  Score=89.13  Aligned_cols=33  Identities=30%  Similarity=0.473  Sum_probs=32.0

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      .|||+|||||.||+.||+++++.|.+++|+|++
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~   34 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQS   34 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEec
Confidence            599999999999999999999999999999997

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.83  E-value=3.5e-08  Score=76.64  Aligned_cols=36  Identities=14%  Similarity=0.348  Sum_probs=33.3

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+++++
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~i   57 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI   57 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhccc
Confidence            478999999999999999999999999999997754

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.5e-08  Score=81.45  Aligned_cols=41  Identities=17%  Similarity=0.255  Sum_probs=38.7

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecC
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP  293 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p  293 (507)
                      +|+++++|+.|++|+.+++++.+++.+|+++.||.||+|++
T Consensus        96 ~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          96 EGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             TTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred             CCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeec
Confidence            49999999999999999999999999999999999999986

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.82  E-value=1.9e-09  Score=95.87  Aligned_cols=42  Identities=33%  Similarity=0.693  Sum_probs=39.8

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ....+|+|||||++||+||..|+++|++|+|+|+++++||.+
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~   88 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHL   88 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTH
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCcc
Confidence            578999999999999999999999999999999999999965

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.81  E-value=1.9e-09  Score=97.62  Aligned_cols=41  Identities=22%  Similarity=0.335  Sum_probs=36.0

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG   65 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG   65 (507)
                      +..++||+|||||++||+||++|+++|++|+|+|+....+|
T Consensus         3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~~   43 (268)
T d1c0pa1           3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV   43 (268)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCT
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            45678999999999999999999999999999999764444

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.81  E-value=2.3e-08  Score=78.22  Aligned_cols=36  Identities=25%  Similarity=0.545  Sum_probs=33.5

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ..+|+|||||+.|+-+|..|++.|++|+|+|+++++
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~   65 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL   65 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeecccc
Confidence            478999999999999999999999999999998754

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.80  E-value=9.6e-10  Score=98.19  Aligned_cols=42  Identities=26%  Similarity=0.305  Sum_probs=37.9

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCC-------CeEEEEecCCCCCceeEe
Q 010542           28 SPSVIVIGAGMAGVAAARALHDAS-------FKVVLLESRDRVGGRVHT   69 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G-------~~V~vlE~~~~~GG~~~s   69 (507)
                      .++|+|||||+|||+||++|+++|       ++|+|||+.+++||.++.
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~   50 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRS   50 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHH
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeee
Confidence            369999999999999999999987       589999999999997643

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.79  E-value=2e-08  Score=78.88  Aligned_cols=37  Identities=38%  Similarity=0.565  Sum_probs=33.8

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      +..+|+|||||+.|+-+|..|++.|++|+|+|+.+++
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~   65 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP   65 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcc
Confidence            4578999999999999999999999999999997654

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=3.7e-08  Score=92.18  Aligned_cols=41  Identities=29%  Similarity=0.329  Sum_probs=37.6

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR   66 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~   66 (507)
                      .+.+||+|||||++||+||..++++|.+|+|+||....||.
T Consensus         5 ~~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg~   45 (330)
T d1neka2           5 VREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSH   45 (330)
T ss_dssp             EEEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGSG
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCCc
Confidence            35799999999999999999999999999999998877764

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.75  E-value=2.2e-09  Score=95.22  Aligned_cols=41  Identities=34%  Similarity=0.516  Sum_probs=38.7

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ..|||+|||||++||+||.+|++.|++|+|+|+...+||.+
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~   45 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVC   45 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHH
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCee
Confidence            46999999999999999999999999999999999999965

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.73  E-value=2.8e-09  Score=94.54  Aligned_cols=41  Identities=29%  Similarity=0.360  Sum_probs=36.9

Q ss_pred             CCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCceeE
Q 010542           28 SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~~~   68 (507)
                      +++|+|||||+|||+||.+|+++  |++|+|||+.+++||.++
T Consensus         1 ~~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~   43 (230)
T d1cjca2           1 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVR   43 (230)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHH
T ss_pred             CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceeh
Confidence            36899999999999999999876  789999999999999653

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.72  E-value=4e-09  Score=90.92  Aligned_cols=40  Identities=28%  Similarity=0.544  Sum_probs=36.9

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCCCCCcee
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESRDRVGGRV   67 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~~~GG~~   67 (507)
                      ..+|+|||||++||+||++|+++|+ +|+|||+++++||..
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~   44 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLS   44 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHH
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchh
Confidence            5789999999999999999999998 599999999998854

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.71  E-value=3.8e-09  Score=93.41  Aligned_cols=41  Identities=34%  Similarity=0.432  Sum_probs=37.0

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR   66 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~   66 (507)
                      +++|||+|||||++||+||.+|++.|++|+|+|+....||.
T Consensus         1 ~~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~   41 (229)
T d3lada1           1 SQKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGK   41 (229)
T ss_dssp             CCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCcc
Confidence            46899999999999999999999999999999997665553

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=3.1e-09  Score=93.36  Aligned_cols=40  Identities=28%  Similarity=0.442  Sum_probs=36.8

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ++|||+|||||.+||+||.+|++.|++|+|+|+ +.+||.|
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~-~~~GGtc   40 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEA-KELGGTC   40 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEec-cCcCCeE
Confidence            469999999999999999999999999999999 5689854

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.67  E-value=7e-08  Score=91.32  Aligned_cols=42  Identities=24%  Similarity=0.381  Sum_probs=36.4

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHh----CCCeEEEEecCCCCCce
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHD----ASFKVVLLESRDRVGGR   66 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~----~G~~V~vlE~~~~~GG~   66 (507)
                      ....+||+|||||++||+||+.|++    +|.+|+|+||....||.
T Consensus        18 e~~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~   63 (356)
T d1jnra2          18 EVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSG   63 (356)
T ss_dssp             EEEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCS
T ss_pred             eEEecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCCh
Confidence            3457899999999999999999975    69999999998777664

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.63  E-value=1.6e-07  Score=73.03  Aligned_cols=41  Identities=27%  Similarity=0.413  Sum_probs=35.9

Q ss_pred             ccCCcccCceeEEEEeeCCc-EEEEEcCCcEEEcCEEEEecC
Q 010542          253 KGLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVP  293 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p  293 (507)
                      +|+++++|+.|++|+.++++ ..+++++|+++.||.||+|++
T Consensus        75 ~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          75 NGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             TTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             CcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence            48999999999999987654 468899999999999999985

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.62  E-value=5.7e-07  Score=86.23  Aligned_cols=47  Identities=28%  Similarity=0.323  Sum_probs=43.5

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEecc
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY   71 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~   71 (507)
                      .++.+||+|+|-|+.=.-.|..|++.|++|+-+|+++..||...|..
T Consensus         3 lP~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aSl~   49 (491)
T d1vg0a1           3 LPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFS   49 (491)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEC
T ss_pred             CCCccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCccccee
Confidence            35789999999999999999999999999999999999999877764

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.62  E-value=2.7e-07  Score=72.14  Aligned_cols=36  Identities=19%  Similarity=0.406  Sum_probs=33.4

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ..+++|||||..|+-+|..|++.|.+|+|+|+++++
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~   58 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI   58 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEecccc
Confidence            368999999999999999999999999999997764

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.62  E-value=6.8e-09  Score=96.51  Aligned_cols=68  Identities=28%  Similarity=0.409  Sum_probs=50.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCe
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL  104 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~  104 (507)
                      ..+||+|||||++||+||++|+++  |++|+|+|+++.+||.++.   .++.+.  ...     .......+++++|+..
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~--~~~-----~~~~~~~~~~~~gi~~  118 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL---GGQLFS--AMV-----MRKPAHLFLQELEIPY  118 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC---CGGGCC--CEE-----EETTTHHHHHHTTCCC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEe---cCEeCC--HHH-----HHhHHHHHHHhCCcEE
Confidence            468999999999999999999964  9999999999999997743   122211  111     1224567788888764

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.60  E-value=3e-07  Score=71.33  Aligned_cols=40  Identities=28%  Similarity=0.334  Sum_probs=35.4

Q ss_pred             ccCCcccCceeEEEEeeCC-cEEEEEcCCcEEEcCEEEEec
Q 010542          253 KGLDIRLGHRVTKITRHYI-GVKVTVEGGKTFVADAVVVAV  292 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~-~v~v~~~~g~~~~ad~VI~a~  292 (507)
                      +|+++++|+.|++|+...+ .+.+++++|+++.||.||+|+
T Consensus        77 ~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          77 NGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             TTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             cCcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence            4999999999999987654 577999999999999999985

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.59  E-value=1.4e-07  Score=73.90  Aligned_cols=36  Identities=22%  Similarity=0.387  Sum_probs=33.2

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ..+++|||||+.||-.|..|++.|.+|+|+|+++++
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~   60 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI   60 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcccc
Confidence            468999999999999999999999999999997754

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.58  E-value=7.2e-08  Score=74.75  Aligned_cols=36  Identities=25%  Similarity=0.530  Sum_probs=33.2

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ..+++|||||+.|+-+|..|++.|++|+|+|+.+++
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~i   56 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI   56 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccc
Confidence            368999999999999999999999999999998754

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.55  E-value=2.6e-07  Score=72.41  Aligned_cols=37  Identities=16%  Similarity=0.357  Sum_probs=33.6

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ...+++|||||+.|+-.|..|++.|.+|+|+|+.+++
T Consensus        25 ~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~i   61 (125)
T d1ojta2          25 VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGL   61 (125)
T ss_dssp             CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             cCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccc
Confidence            3478999999999999999999999999999997654

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.54  E-value=1.6e-08  Score=88.93  Aligned_cols=40  Identities=30%  Similarity=0.437  Sum_probs=36.1

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      .++||+|||||.+||+||.++++.|++|+|+|+ ..+||.|
T Consensus         2 ~~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk-~~~GG~~   41 (223)
T d1ebda1           2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEK-GNLGGVC   41 (223)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCEEEEEec-CCCCcce
Confidence            369999999999999999999999999999999 5567754

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=1.4e-08  Score=86.91  Aligned_cols=43  Identities=23%  Similarity=0.405  Sum_probs=36.9

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ..+.+||+|||||.+||+||.+|++.|.+|+|+|+.+..|...
T Consensus         2 ~~k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~   44 (190)
T d1trba1           2 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLT   44 (190)
T ss_dssp             CEEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGG
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeeccccccc
Confidence            3467899999999999999999999999999999876644443

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=8e-07  Score=69.69  Aligned_cols=36  Identities=28%  Similarity=0.397  Sum_probs=33.2

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ..+++|||||..|+-+|..|++.|.+|+|+|+++++
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~   57 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKV   57 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeecccc
Confidence            368999999999999999999999999999997754

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=3.4e-08  Score=83.98  Aligned_cols=39  Identities=31%  Similarity=0.502  Sum_probs=35.1

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH   68 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   68 (507)
                      .|||+|||||.+||+||.++++.|.+|+|+|+  +.||++.
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~--~~gg~~~   39 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFGGQIL   39 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECS--STTGGGG
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEE--ecCCccc
Confidence            38999999999999999999999999999997  4688653

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.49  E-value=3.9e-08  Score=93.83  Aligned_cols=39  Identities=26%  Similarity=0.428  Sum_probs=35.1

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG   64 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~G   64 (507)
                      ..++||||||||++|+++|.+|+++|++|+|||+....+
T Consensus         2 d~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~~   40 (379)
T d2f5va1           2 DIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDS   40 (379)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS
T ss_pred             CCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCCC
Confidence            567999999999999999999999999999999954443

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.49  E-value=4.4e-08  Score=88.35  Aligned_cols=43  Identities=23%  Similarity=0.361  Sum_probs=40.7

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ..+.||++|||||.+|+.||..|++.|.+|+|+|+.+.+||.|
T Consensus        39 ~~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c   81 (261)
T d1mo9a1          39 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSC   81 (261)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHH
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccc
Confidence            5678999999999999999999999999999999999999965

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.48  E-value=2.5e-08  Score=87.54  Aligned_cols=41  Identities=27%  Similarity=0.470  Sum_probs=37.3

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ..++|++|||||.+||+||.++++.|.+|+|+|++ .+||.|
T Consensus         3 ~~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~-~~GG~c   43 (220)
T d1lvla1           3 TIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTC   43 (220)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHH
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCcc
Confidence            46799999999999999999999999999999984 678865

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.48  E-value=4.1e-08  Score=87.06  Aligned_cols=38  Identities=29%  Similarity=0.349  Sum_probs=34.5

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG   65 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG   65 (507)
                      .|||+|||||++||+||.++++.|++|+|+|+....|.
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~   40 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPL   40 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence            68999999999999999999999999999999665443

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=3.9e-08  Score=86.27  Aligned_cols=39  Identities=33%  Similarity=0.579  Sum_probs=35.6

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      .|||+|||||.+||+||.++++.|++|+|+|+ +.+||-|
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk-~~~GG~c   41 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVES-HKLGGTC   41 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEec-cCCCCcc
Confidence            59999999999999999999999999999998 5677744

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.45  E-value=4.2e-08  Score=88.40  Aligned_cols=38  Identities=45%  Similarity=0.655  Sum_probs=35.7

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ||++|||||.+|++||.++++.|.+|+|+|+ +.+||.|
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~-~~~GGtc   39 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEK-SRLGGTC   39 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEec-CCCCCeE
Confidence            8999999999999999999999999999998 5689965

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.44  E-value=4.7e-08  Score=89.80  Aligned_cols=36  Identities=33%  Similarity=0.522  Sum_probs=33.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      +++||+|||||++||++|..|+++|++|+||||++.
T Consensus         1 mk~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            357999999999999999999999999999999764

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=5e-08  Score=90.21  Aligned_cols=41  Identities=32%  Similarity=0.496  Sum_probs=35.1

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      .+.+||+|||||++||+||..+++.| +|+|+||.+..||.+
T Consensus         5 ~~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG~s   45 (305)
T d1chua2           5 EHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGST   45 (305)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC---
T ss_pred             cccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCCch
Confidence            35799999999999999999999888 999999998888754

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.38  E-value=1.7e-06  Score=67.40  Aligned_cols=37  Identities=16%  Similarity=0.305  Sum_probs=33.5

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      +..+|+|||||..|+-.|..|++.|.+|+++|+.+++
T Consensus        21 ~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~   57 (121)
T d1mo9a2          21 PGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPL   57 (121)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchh
Confidence            3578999999999999999999999999999997643

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.35  E-value=1.2e-07  Score=83.97  Aligned_cols=35  Identities=26%  Similarity=0.407  Sum_probs=31.8

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      +++|||+|||||++||+||.++++.|. +|+|+|+.
T Consensus         1 ~~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~   36 (238)
T d1aoga1           1 SKIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQ   36 (238)
T ss_dssp             CCSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESC
T ss_pred             CCccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEee
Confidence            468999999999999999999999875 79999984

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.31  E-value=1.5e-07  Score=88.83  Aligned_cols=37  Identities=35%  Similarity=0.577  Sum_probs=33.1

Q ss_pred             CCCeEEEECccHHHHHHHHHHH-----hCCCeEEEEecCCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALH-----DASFKVVLLESRDRV   63 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~-----~~G~~V~vlE~~~~~   63 (507)
                      ..|||+|||||++||++|..|+     ++|++|+|||+++.+
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            4699999999999999999996     579999999997654

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.30  E-value=1.3e-07  Score=84.14  Aligned_cols=39  Identities=26%  Similarity=0.455  Sum_probs=34.0

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCCCCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRDRVG   64 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~~~G   64 (507)
                      ++.|||+|||||++|++||.++++.|. +|.|+|+....|
T Consensus         1 ~k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~~   40 (240)
T d1feca1           1 SRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHG   40 (240)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSB
T ss_pred             CCccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccCC
Confidence            368999999999999999999999985 699999976543

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.27  E-value=5.2e-06  Score=64.49  Aligned_cols=32  Identities=19%  Similarity=0.315  Sum_probs=30.3

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      .+++|||||+.|+-.|..|++.|.+|+|+|++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            57999999999999999999999999999974

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.25  E-value=3e-07  Score=87.40  Aligned_cols=36  Identities=28%  Similarity=0.421  Sum_probs=33.5

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ....+||||||||.+|+.+|++|+++|++|+|||+.
T Consensus         4 ~~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           4 DGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             TTCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            356799999999999999999999999999999984

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.23  E-value=3.1e-07  Score=78.41  Aligned_cols=37  Identities=24%  Similarity=0.272  Sum_probs=33.4

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ..+||+|||||.+||+||.+|++.|.+|+|+|+....
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~   40 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMAN   40 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBT
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeeccc
Confidence            4589999999999999999999999999999986543

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.22  E-value=8e-08  Score=85.56  Aligned_cols=32  Identities=31%  Similarity=0.464  Sum_probs=29.0

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ++|+|||||++||++|++|+++|++|+|+|+.
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~~   32 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDV   32 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEE
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEEeee
Confidence            57999999999999999999999988777774

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.18  E-value=5.6e-07  Score=85.32  Aligned_cols=32  Identities=28%  Similarity=0.461  Sum_probs=30.7

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      .||||||+|.+|+.+|++|+++|++|+|||+.
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   34 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMG   34 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecC
Confidence            58999999999999999999999999999994

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.10  E-value=9.5e-07  Score=83.34  Aligned_cols=34  Identities=41%  Similarity=0.569  Sum_probs=32.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      +.||+||||||.+|+..|.+|+++|++|+|||+.
T Consensus         1 t~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG   34 (360)
T d1kdga1           1 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERG   34 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhCCCeEEEEEcc
Confidence            3699999999999999999999999999999994

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=2.5e-06  Score=73.81  Aligned_cols=40  Identities=15%  Similarity=0.262  Sum_probs=34.9

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCc
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL  294 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~  294 (507)
                      .|++++++++|++|+.+++  .|++++|+++.||.||+|++.
T Consensus        96 ~gI~~~~g~~V~~id~~~~--~V~l~dG~~i~~d~lViAtG~  135 (213)
T d1m6ia1          96 GGVAVLTGKKVVQLDVRDN--MVKLNDGSQITYEKCLIATGG  135 (213)
T ss_dssp             CEEEEEETCCEEEEEGGGT--EEEETTSCEEEEEEEEECCCE
T ss_pred             CCeEEEeCCEEEEeeccCc--eeeeccceeeccceEEEeeee
Confidence            4889999999999987766  467789999999999999984

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.07  E-value=1.5e-06  Score=82.95  Aligned_cols=36  Identities=25%  Similarity=0.497  Sum_probs=33.0

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCC-CeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~~   61 (507)
                      .++||+||||||.+|+..|.+|+++| ++|+|||+..
T Consensus        22 ~~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~   58 (391)
T d1gpea1          22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF   58 (391)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred             CCeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            35799999999999999999999998 6999999964

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.00  E-value=1.2e-06  Score=77.05  Aligned_cols=38  Identities=26%  Similarity=0.563  Sum_probs=33.0

Q ss_pred             CeEEEECccHHHHHHHHHHHhC---CCeEEEEecCCCCCcee
Q 010542           29 PSVIVIGAGMAGVAAARALHDA---SFKVVLLESRDRVGGRV   67 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~---G~~V~vlE~~~~~GG~~   67 (507)
                      .+|+|||||++|++||.++++.   |++|+|+|+ ..+||.|
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk-~~~GG~c   42 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGGAA   42 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEES-SCTTHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEec-CCCCcee
Confidence            5899999999999999998775   468999998 6788854

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.99  E-value=1.8e-06  Score=82.19  Aligned_cols=36  Identities=28%  Similarity=0.567  Sum_probs=32.5

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCC-CeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~~   61 (507)
                      .+.||+||||||.+|+..|.+|+++| ++|+|||+..
T Consensus        15 ~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1          15 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             CCeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            35699999999999999999999986 7999999953

>d2ivda2 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=97.97  E-value=1.4e-05  Score=60.13  Aligned_cols=95  Identities=16%  Similarity=0.166  Sum_probs=72.7

Q ss_pred             CcceeEEEEEccCCCCCCCccceeecCCCC---cee-eee----ccccCCCceEEEEEeccchhHHHhcCCHHHHHHHHH
Q 010542          321 VGIENKIIMHFDKVFWPNVEFLGVVSDTSY---GCS-YFL----NLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAF  392 (507)
Q Consensus       321 ~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~---~~~-~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~  392 (507)
                      |.++..|.+.|++.-.+..+.+|++.+...   ... .|.    ....++++.++++++++....++..++++++.+.++
T Consensus         2 Ya~vavV~l~~~~~~~~~~~GfG~LVP~~e~~~~lg~~f~S~~fp~r~p~~~~llrv~~Gg~~~~~~~~~~d~~l~~~a~   81 (108)
T d2ivda2           2 YAPIAVVHLGFDAGTLPAPDGFGFLVPAEEQRRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQPGLVEQDEDALAALAR   81 (108)
T ss_dssp             BCCEEEEEEEECTTSSCCCCSSEEECCGGGCCSCCEEEEHHHHCGGGBSTTCEEEEEEEECTTCGGGGGSCHHHHHHHHH
T ss_pred             CCCEEEEEEEEcHHHCCCCCceEEEccCCCCCeEEEEEEEccccccccCCCCEEEEEEeCCCCCcccccCCHHHHHHHHH
Confidence            667788899998776664456788765421   111 111    223467888899999988877888999999999999


Q ss_pred             HHHHHhCCCCCCCcEEEeccCCC
Q 010542          393 TQLKKILPDASSPIQYLVSHWGT  415 (507)
Q Consensus       393 ~~L~~~~p~~~~~~~~~~~~w~~  415 (507)
                      ++|+++++....|....+.+|..
T Consensus        82 ~dL~~~lgi~~~P~~~~v~rw~~  104 (108)
T d2ivda2          82 EELKALAGVTARPSFTRVFRWPL  104 (108)
T ss_dssp             HHHHHHHCCCSCCSEEEEEEESS
T ss_pred             HHHHHHhCCCCCCcEEEeeECCC
Confidence            99999998778899999999965

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.87  E-value=7.2e-06  Score=63.76  Aligned_cols=35  Identities=29%  Similarity=0.504  Sum_probs=32.8

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      .+++|||||.+|+-+|..|++.|++|+|+|+++++
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l   67 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF   67 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEeccccc
Confidence            68999999999999999999999999999997754

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.76  E-value=4.1e-06  Score=78.53  Aligned_cols=36  Identities=28%  Similarity=0.517  Sum_probs=32.5

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ....||+||||||.+|+..|.+|+++ ++|+|||+.+
T Consensus        23 ~~~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~   58 (351)
T d1ju2a1          23 LEGSYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGS   58 (351)
T ss_dssp             SEEEEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSB
T ss_pred             ccCCccEEEECccHHHHHHHHHhcCC-CCEEEEecCC
Confidence            44579999999999999999999987 9999999964

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=1.4e-05  Score=58.64  Aligned_cols=36  Identities=17%  Similarity=0.418  Sum_probs=32.8

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      +..+|+|||.|.+|+++|.+|.++|.+|+++|.+..
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            456799999999999999999999999999998654

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.66  E-value=1.3e-05  Score=67.07  Aligned_cols=35  Identities=31%  Similarity=0.548  Sum_probs=31.1

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCC--CeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~~   62 (507)
                      .++|+|||||.+|+.+|..|++.|  .+|+|+|+++.
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            368999999999999999999987  48999998764

>d1seza2 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=97.43  E-value=0.00022  Score=53.79  Aligned_cols=95  Identities=16%  Similarity=0.170  Sum_probs=70.8

Q ss_pred             CcceeEEEEEccCCCCC-CCccceeecCCCC------cee-eee----ccccCCCceEEEEEeccchhHHHhcCCHHHHH
Q 010542          321 VGIENKIIMHFDKVFWP-NVEFLGVVSDTSY------GCS-YFL----NLHKATGHCVLVYMPAGQLARDIEKMSDEAAA  388 (507)
Q Consensus       321 ~~~~~~~~l~~~~~~~~-~~~~~g~~~~~~~------~~~-~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~  388 (507)
                      |.++..+.+.|++.-++ ....+|++.+...      ... .|.    ....+.+..++++++++....++.+++++++.
T Consensus         2 Ya~va~V~l~~~~~~~~~~~~GfG~LVP~~e~~~g~~~lg~~f~S~~fp~r~p~~~~ll~~~~Gg~~~~~~~~~~d~~l~   81 (112)
T d1seza2           2 YVPLSVVITTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFSSMMFPDRAPNNVYLYTTFVGGSRNRELAKASRTELK   81 (112)
T ss_dssp             EEEEEEEEEEEEGGGBSSCCCSSEEECCGGGGGGTCCSSEEEEHHHHCGGGSCTTEEEEEEEEESTTCGGGTTCCHHHHH
T ss_pred             CCcEEEEEEEEchHHcCCCCCceEEEeCCcccCCCceEEEEEEecccCCCcCCCCcEEEEEEECCCCCcccccCCHHHHH
Confidence            56777888999876654 3345688765321      111 121    22346778888999988888888899999999


Q ss_pred             HHHHHHHHHhCCCCCCCcEEEeccCCC
Q 010542          389 NFAFTQLKKILPDASSPIQYLVSHWGT  415 (507)
Q Consensus       389 ~~~~~~L~~~~p~~~~~~~~~~~~w~~  415 (507)
                      +.++++|+++++....|....+.+|..
T Consensus        82 ~~a~~dl~~~lgi~~~P~~~~v~rw~~  108 (112)
T d1seza2          82 EIVTSDLKQLLGAEGEPTYVNHLYWSK  108 (112)
T ss_dssp             HHHHHHHHHHHCBCSCCSSEEEEEEEE
T ss_pred             HHHHHHHHHHhCCCCCccEEEEEECCc
Confidence            999999999998878898888999953

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.40  E-value=6.5e-05  Score=62.60  Aligned_cols=35  Identities=23%  Similarity=0.356  Sum_probs=32.3

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      .+.|+|||||..|..+|.+|+++|++|+|++++..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            47899999999999999999999999999999654

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.40  E-value=6.4e-05  Score=63.77  Aligned_cols=43  Identities=16%  Similarity=0.174  Sum_probs=35.5

Q ss_pred             ccCCcccCceeEEEEeeCCcEEEEE-cCCc--EEEcCEEEEecCch
Q 010542          253 KGLDIRLGHRVTKITRHYIGVKVTV-EGGK--TFVADAVVVAVPLG  295 (507)
Q Consensus       253 ~g~~i~~~~~V~~I~~~~~~v~v~~-~~g~--~~~ad~VI~a~p~~  295 (507)
                      +|+++++++.|++|+.+++.++++. .+|+  ++.+|.+|+|++..
T Consensus        69 ~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~  114 (198)
T d1nhpa1          69 RGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAV  114 (198)
T ss_dssp             TTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred             CCcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecce
Confidence            4899999999999999888887763 4454  57899999999864

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.34  E-value=8e-05  Score=62.24  Aligned_cols=36  Identities=25%  Similarity=0.442  Sum_probs=32.5

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      ..+|+|||||.+|+.+|..|++.|.+|+|+|..++.
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   38 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence            468999999999999999999999999999986643

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.29  E-value=0.00011  Score=61.26  Aligned_cols=33  Identities=24%  Similarity=0.205  Sum_probs=31.2

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ++|+|||||..|++.|..|+++|++|.++++++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            689999999999999999999999999999853

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.27  E-value=0.00011  Score=60.26  Aligned_cols=32  Identities=22%  Similarity=0.576  Sum_probs=28.6

Q ss_pred             eEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      +|+|||||.+|+.+|..|++ +.+|+|+|+.+.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~   33 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPV   33 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSS
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecccc
Confidence            69999999999999999975 689999998654

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.23  E-value=7.1e-05  Score=62.60  Aligned_cols=40  Identities=18%  Similarity=0.243  Sum_probs=33.6

Q ss_pred             cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542          254 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG  295 (507)
Q Consensus       254 g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  295 (507)
                      +++++++++|++|..+..  .+++.+|+++.+|.||+|++..
T Consensus        69 ~i~~~~~~~v~~i~~~~~--~~~~~~g~~~~~D~vi~a~G~~  108 (183)
T d1d7ya1          69 EVEWLLGVTAQSFDPQAH--TVALSDGRTLPYGTLVLATGAA  108 (183)
T ss_dssp             TCEEEETCCEEEEETTTT--EEEETTSCEEECSEEEECCCEE
T ss_pred             CeEEEEeccccccccccc--eeEecCCcEeeeeeEEEEEEEE
Confidence            778999999999887665  4567899999999999999753

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=0.00034  Score=57.16  Aligned_cols=39  Identities=21%  Similarity=0.105  Sum_probs=34.5

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV   67 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~   67 (507)
                      ++|+|||+|..|...|..|++.|++|+++.+.....-..
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~   39 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSV   39 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhh
Confidence            689999999999999999999999999999987644433

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.82  E-value=0.00047  Score=58.34  Aligned_cols=33  Identities=18%  Similarity=0.347  Sum_probs=30.9

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      |+|+|||.|..||+.|..|+++|++|..+|.+.
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            579999999999999999999999999999854

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.72  E-value=0.0011  Score=53.35  Aligned_cols=38  Identities=13%  Similarity=0.183  Sum_probs=32.7

Q ss_pred             CCCeEEEE--CccHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 010542           27 RSPSVIVI--GAGMAGVAAARALHDASFKVVLLESRDRVG   64 (507)
Q Consensus        27 ~~~dv~II--GaGiaGL~aA~~L~~~G~~V~vlE~~~~~G   64 (507)
                      ....++||  |||..|+.+|-.|++.|++|+|+|+.++++
T Consensus        38 ~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~   77 (156)
T d1djqa2          38 IGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLAN   77 (156)
T ss_dssp             CCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTT
T ss_pred             cCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccc
Confidence            35566666  999999999999999999999999987653

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.70  E-value=0.001  Score=53.17  Aligned_cols=34  Identities=21%  Similarity=0.452  Sum_probs=32.0

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      +.-+|+|||+|.+|+.|+..+.+.|.+|+++|.+
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~   64 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN   64 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCc
Confidence            5689999999999999999999999999999984

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00098  Score=55.65  Aligned_cols=35  Identities=29%  Similarity=0.467  Sum_probs=31.9

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +-.+|+|||||..|..-|+.++++|++|+++|.+.
T Consensus         3 ~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           3 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            34689999999999999999999999999999853

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.62  E-value=0.0011  Score=51.61  Aligned_cols=33  Identities=24%  Similarity=0.489  Sum_probs=31.2

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ++|+|+|+|-.|...|..|.+.|++|+|+|++.
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            579999999999999999999999999999965

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.55  E-value=0.00097  Score=55.40  Aligned_cols=35  Identities=17%  Similarity=0.277  Sum_probs=31.7

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +-.+|+|||||..|..-|..++.+|++|+++|.+.
T Consensus         3 ~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           3 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            34679999999999999999999999999999853

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.44  E-value=0.0019  Score=52.47  Aligned_cols=35  Identities=26%  Similarity=0.384  Sum_probs=32.2

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +.-+|+|||||.+|+.||......|.+|+++|.+.
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~   62 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA   62 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence            45799999999999999999999999999999854

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.44  E-value=0.001  Score=55.31  Aligned_cols=36  Identities=22%  Similarity=0.280  Sum_probs=32.2

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ..+.+|+|||||--|.+.|..|++.|++|+++.++.
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            455689999999999999999999999999998753

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.31  E-value=0.002  Score=52.35  Aligned_cols=33  Identities=18%  Similarity=0.316  Sum_probs=30.5

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ++|.|||.|..|.+-|..|+++|++|++++++.
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            579999999999999999999999999999853

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.30  E-value=0.0018  Score=51.19  Aligned_cols=37  Identities=19%  Similarity=0.386  Sum_probs=32.4

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCC--eEEEEecCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASF--KVVLLESRD   61 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~~   61 (507)
                      +.++++|+|||+|-.|.++|+.|+.+|.  ++.++|.+.
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            3567899999999999999999999884  899999753

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.28  E-value=0.0032  Score=50.36  Aligned_cols=42  Identities=19%  Similarity=0.355  Sum_probs=34.9

Q ss_pred             ccCCCCCCCCCeEEEECccHHHHHHHHHHHhCCC--eEEEEecC
Q 010542           19 NNAGKGQARSPSVIVIGAGMAGVAAARALHDASF--KVVLLESR   60 (507)
Q Consensus        19 ~~~~~~~~~~~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~   60 (507)
                      .+......+..+|+|||+|-.|-++|+.|+..|.  ++.++|.+
T Consensus        11 ~~~~~~~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          11 VAEEEATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             SSCSCCCCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             cCcccccCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            3334434567899999999999999999999986  89999975

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.26  E-value=0.0028  Score=50.61  Aligned_cols=37  Identities=22%  Similarity=0.460  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEC-ccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           25 QARSPSVIVIG-AGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        25 ~~~~~dv~IIG-aGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      .....+|+||| .|..|.+-|..|.++|++|.+++++.
T Consensus         6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           6 NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            45678999999 69999999999999999999999854

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.15  E-value=0.0048  Score=49.09  Aligned_cols=36  Identities=25%  Similarity=0.324  Sum_probs=30.9

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~   61 (507)
                      ....+|+|||||-+|+=||..|.+.|. +|+++++.+
T Consensus        43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          43 SIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            445689999999999999999999985 688987754

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.14  E-value=0.0034  Score=50.07  Aligned_cols=37  Identities=27%  Similarity=0.324  Sum_probs=32.8

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD   61 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~   61 (507)
                      +.++.+|+|||+|-.|.++|+.|+..|. ++.+++.+.
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            5678999999999999999999998886 899999754

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.09  E-value=0.0024  Score=49.75  Aligned_cols=33  Identities=24%  Similarity=0.414  Sum_probs=30.7

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ++++|||+|-.|...|..|.+.|++|+|+|++.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            468999999999999999999999999999964

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.05  E-value=0.0024  Score=52.68  Aligned_cols=31  Identities=29%  Similarity=0.354  Sum_probs=29.2

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEec
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLES   59 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~   59 (507)
                      ++|+|||||.-|.+.|..|+++|++|.|+-+
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r   31 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence            6899999999999999999999999999965

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.64  E-value=0.0049  Score=51.49  Aligned_cols=32  Identities=19%  Similarity=0.307  Sum_probs=28.8

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ++|+|||.|..||.+|..|+ +|++|+.+|-+.
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~   32 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILP   32 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCH
Confidence            57999999999999999887 599999999864

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.61  E-value=0.0057  Score=49.26  Aligned_cols=33  Identities=21%  Similarity=0.337  Sum_probs=30.9

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      +.+|.|||-|..|..-|.+|.++|++|.+++++
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~   33 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLV   33 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECc
Confidence            457999999999999999999999999999985

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.60  E-value=0.0055  Score=49.34  Aligned_cols=33  Identities=24%  Similarity=0.406  Sum_probs=30.7

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ++|.|||-|..|...|..|+++|++|.+++++.
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~   33 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   33 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            579999999999999999999999999999853

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.49  E-value=0.012  Score=46.94  Aligned_cols=36  Identities=19%  Similarity=0.370  Sum_probs=31.7

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCC--eEEEEecC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASF--KVVLLESR   60 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~   60 (507)
                      ..++.+|+|||+|-.|-++|+.|...|.  ++.+++.+
T Consensus        16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~   53 (159)
T d2ldxa1          16 KLSRCKITVVGVGDVGMACAISILLKGLADELALVDAD   53 (159)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            4456789999999999999999999986  79999975

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.36  E-value=0.0085  Score=47.28  Aligned_cols=35  Identities=31%  Similarity=0.572  Sum_probs=31.0

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCC--eEEEEecC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASF--KVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~   60 (507)
                      ....+|+|||||-.|.++|+.|+..|.  ++.++|..
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~   40 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeec
Confidence            456799999999999999999999875  79999974

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.33  E-value=0.0068  Score=48.08  Aligned_cols=33  Identities=21%  Similarity=0.434  Sum_probs=30.7

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEe
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLE   58 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE   58 (507)
                      -+...|+|||||-.|+.-|..|.+.|.+|+|+-
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVva   43 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVS   43 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            356889999999999999999999999999994

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.33  E-value=0.011  Score=44.25  Aligned_cols=33  Identities=21%  Similarity=0.351  Sum_probs=30.8

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEec
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLES   59 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~   59 (507)
                      +..+|+|||+|-.|..-|..|.+.|.+|+|+..
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~   43 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNAL   43 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            467999999999999999999999999999875

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=95.23  E-value=0.011  Score=46.21  Aligned_cols=33  Identities=33%  Similarity=0.527  Sum_probs=29.8

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCC--eEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASF--KVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~~   61 (507)
                      ++|+|||||-.|.+.|+.|+..|.  ++.++|.++
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            589999999999999999999974  899999765

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.12  E-value=0.011  Score=49.24  Aligned_cols=32  Identities=25%  Similarity=0.323  Sum_probs=29.5

Q ss_pred             CeEEEE-CccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           29 PSVIVI-GAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        29 ~dv~II-GaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ++|+|| |+|--|.+.|..|+++|++|+|..++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~   33 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRR   33 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            579999 67999999999999999999999874

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.02  E-value=0.01  Score=48.59  Aligned_cols=32  Identities=28%  Similarity=0.461  Sum_probs=30.2

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ++|.|||-|..|..-|.+|.++|++|.+++++
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~   33 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRT   33 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECC
Confidence            57999999999999999999999999999874

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=95.00  E-value=0.011  Score=48.29  Aligned_cols=34  Identities=18%  Similarity=0.311  Sum_probs=31.3

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +.+|.|||-|..|...|..|.++|++|.+++++.
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            4579999999999999999999999999999854

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.00  E-value=0.011  Score=43.70  Aligned_cols=36  Identities=17%  Similarity=0.133  Sum_probs=30.6

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      .-+.++|+|||+|.||+-.|..|++.+.+|++.-+.
T Consensus        29 ~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r   64 (107)
T d2gv8a2          29 LFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLL   64 (107)
T ss_dssp             GGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECT
T ss_pred             hcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEec
Confidence            346789999999999999999999988887766553

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=95.00  E-value=0.012  Score=46.05  Aligned_cols=33  Identities=30%  Similarity=0.533  Sum_probs=29.4

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASF-KVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~   61 (507)
                      .+|+|||+|-.|.++|+.|+.++. ++.+++...
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            589999999999999999998876 899999643

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=94.99  E-value=0.011  Score=46.31  Aligned_cols=33  Identities=24%  Similarity=0.443  Sum_probs=29.2

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCC--eEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASF--KVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~~   61 (507)
                      ++|+|||+|-.|.++|+.|..+|.  ++.+++.+.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            689999999999999999998874  799998743

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.87  E-value=0.012  Score=45.93  Aligned_cols=33  Identities=18%  Similarity=0.186  Sum_probs=29.2

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCC--eEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASF--KVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~~   61 (507)
                      ++|+|||+|-.|-+.|+.|+.+|.  ++.++|.+.
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            589999999999999999998875  799998643

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=94.86  E-value=0.016  Score=45.24  Aligned_cols=33  Identities=30%  Similarity=0.457  Sum_probs=29.3

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCC--eEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASF--KVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~~   61 (507)
                      .+|+|||+|-.|.++|+.|..+|.  ++.++|...
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~   36 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   36 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence            589999999999999999999986  799999754

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.85  E-value=0.02  Score=45.07  Aligned_cols=34  Identities=24%  Similarity=0.491  Sum_probs=30.0

Q ss_pred             CCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~   61 (507)
                      +.+|.|||+|-.|-++|+.|...+. ++.+++.+.
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            5699999999999999999998886 799999744

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.63  E-value=0.019  Score=44.85  Aligned_cols=33  Identities=36%  Similarity=0.532  Sum_probs=29.2

Q ss_pred             CeEEEECc-cHHHHHHHHHHHhCCC--eEEEEecCC
Q 010542           29 PSVIVIGA-GMAGVAAARALHDASF--KVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGa-GiaGL~aA~~L~~~G~--~V~vlE~~~   61 (507)
                      +||+|||| |-.|.++|+.|+..|.  ++.+++...
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            57999996 9999999999999984  899998753

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=94.59  E-value=0.022  Score=44.40  Aligned_cols=33  Identities=30%  Similarity=0.401  Sum_probs=29.5

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCC--eEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASF--KVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~~   61 (507)
                      .+|+|||+|-.|-++|+.|+.+|.  ++.+++.+.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            579999999999999999999986  799999743

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.52  E-value=0.043  Score=40.50  Aligned_cols=38  Identities=16%  Similarity=0.316  Sum_probs=33.6

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      .+...+|.|||||.-|-..|....+.|++|.+++.+..
T Consensus         8 ~~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2           8 RPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             STTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            34567899999999999999999999999999998643

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.46  E-value=0.018  Score=44.88  Aligned_cols=33  Identities=27%  Similarity=0.433  Sum_probs=29.0

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCC--eEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASF--KVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~~   61 (507)
                      ++|+|||+|-.|.++|+.|+.+|.  ++.++|.+.
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            589999999999999999998874  799999753

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=94.41  E-value=0.027  Score=42.88  Aligned_cols=37  Identities=35%  Similarity=0.426  Sum_probs=33.3

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      .-+..+|+|||+|-+.+-.|.+|++-..+|+++-+.+
T Consensus        24 ~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~   60 (126)
T d1trba2          24 FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD   60 (126)
T ss_dssp             GGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             HhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecc
Confidence            3467899999999999999999999999999998755

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.27  E-value=0.023  Score=44.97  Aligned_cols=33  Identities=24%  Similarity=0.156  Sum_probs=30.0

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ++|.|||.|..|.+.|..|.++|++|+++.+..
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~   33 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGR   33 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence            579999999999999999999999999987643

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.26  E-value=0.023  Score=44.35  Aligned_cols=32  Identities=25%  Similarity=0.434  Sum_probs=28.5

Q ss_pred             eEEEECc-cHHHHHHHHHHHhCCC--eEEEEecCC
Q 010542           30 SVIVIGA-GMAGVAAARALHDASF--KVVLLESRD   61 (507)
Q Consensus        30 dv~IIGa-GiaGL~aA~~L~~~G~--~V~vlE~~~   61 (507)
                      +|+|||| |..|.++|+.|+.+|.  ++.++|.+.
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            7999996 9999999999999986  799999753

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.17  E-value=0.028  Score=45.39  Aligned_cols=32  Identities=25%  Similarity=0.526  Sum_probs=28.2

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCC--eEEEEecC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASF--KVVLLESR   60 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~   60 (507)
                      .+|.|||.|..|.+-|..|.+.|+  +|..+|++
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~   35 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   35 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECC
Confidence            479999999999999999999986  67778874

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=94.06  E-value=0.032  Score=45.06  Aligned_cols=35  Identities=20%  Similarity=0.236  Sum_probs=32.0

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      .+..+|+|+|||=++-++++.|.+.|.+|.|+-|+
T Consensus        16 ~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt   50 (170)
T d1nyta1          16 RPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRT   50 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCEEEEECCcHHHHHHHHHhcccceEEEeccch
Confidence            35688999999999999999999999999999875

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=94.02  E-value=0.034  Score=42.29  Aligned_cols=38  Identities=37%  Similarity=0.375  Sum_probs=33.8

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      .-+..+|+|||+|-+.+-.|.+|++-..+|+|+-+.+.
T Consensus        27 ~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~   64 (126)
T d1fl2a2          27 LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE   64 (126)
T ss_dssp             GGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred             hcCCceEEEEeCCHHHHHHHHhhhccCCceEEEecccc
Confidence            34679999999999999999999999889999988653

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.84  E-value=0.036  Score=44.63  Aligned_cols=36  Identities=28%  Similarity=0.280  Sum_probs=31.5

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ...-.|+|+|+|..|+.++..+...|.+|+++|.++
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            445679999999999999999988999999999853

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.80  E-value=0.045  Score=41.77  Aligned_cols=39  Identities=28%  Similarity=0.375  Sum_probs=34.6

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV   63 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~   63 (507)
                      .-+..+|+|||+|-+.+-.|.+|++--.+|+|+-+.+.+
T Consensus        31 ~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~   69 (130)
T d1vdca2          31 IFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF   69 (130)
T ss_dssp             GGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             HhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccc
Confidence            346799999999999999999999988899999887654

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.55  E-value=0.044  Score=44.19  Aligned_cols=36  Identities=22%  Similarity=0.277  Sum_probs=31.0

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~   61 (507)
                      .+.-.|+|+|+|..|+.++..+...|. +|.+.|.++
T Consensus        25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            345579999999999999999999998 799999753

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.52  E-value=0.0023  Score=55.31  Aligned_cols=38  Identities=16%  Similarity=0.326  Sum_probs=34.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG   64 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~G   64 (507)
                      ...+|+|||||.+|+-+|..|++.|.+|+|+++.+.++
T Consensus       179 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~  216 (233)
T d1djqa3         179 AEAPRLIADATFTGHRVAREIEEANPQIAIPYKRETIA  216 (233)
T ss_dssp             GTSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCC
T ss_pred             cCCceeEecCchHHHHHHHHHHhcCCceEEEEeccccc
Confidence            34679999999999999999999999999999988764

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.44  E-value=0.034  Score=44.36  Aligned_cols=29  Identities=24%  Similarity=0.279  Sum_probs=25.7

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeE
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKV   54 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V   54 (507)
                      ....+|+|||||.+|+-+|..|++.|.++
T Consensus        27 ~~gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          27 PVGNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CCCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             ccCCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            45679999999999999999999999753

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.35  E-value=0.041  Score=43.38  Aligned_cols=32  Identities=19%  Similarity=0.340  Sum_probs=29.6

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ++|.|||+|-.|.+-|..|.+.|++|.|.+++
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~   32 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSS   32 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSS
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcCh
Confidence            57999999999999999999999999999874

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.23  E-value=0.066  Score=42.80  Aligned_cols=35  Identities=17%  Similarity=0.198  Sum_probs=30.9

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      .+.-+|+|+|+|..|+.++..+...|.+|.+++.+
T Consensus        26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~   60 (166)
T d1llua2          26 RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDID   60 (166)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEeeccccHHHHHHHHHHcCCccceecch
Confidence            44567999999999999999888889999999874

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.18  E-value=0.056  Score=43.37  Aligned_cols=37  Identities=11%  Similarity=0.124  Sum_probs=31.8

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ..+.-.|+|+|+|..|+.++..+...|.+|.+++.++
T Consensus        25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~   61 (168)
T d1piwa2          25 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSS   61 (168)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             cCCCCEEEEECCCCcchhHHHHhhhccccccccccch
Confidence            4456789999999999999888877899999999864

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=92.94  E-value=0.055  Score=38.73  Aligned_cols=38  Identities=21%  Similarity=0.317  Sum_probs=33.3

Q ss_pred             CCCCCCCeEEEECccHHHHHH-HHHHHhCCCeEEEEecC
Q 010542           23 KGQARSPSVIVIGAGMAGVAA-ARALHDASFKVVLLESR   60 (507)
Q Consensus        23 ~~~~~~~dv~IIGaGiaGL~a-A~~L~~~G~~V~vlE~~   60 (507)
                      +.+....+|-+||-|=+|+++ |..|.++|++|+--|..
T Consensus         3 ~~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~   41 (96)
T d1p3da1           3 PEMRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIA   41 (96)
T ss_dssp             CCCTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESC
T ss_pred             ccchhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            346778899999999999999 99999999999988874

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=92.88  E-value=0.056  Score=43.35  Aligned_cols=35  Identities=26%  Similarity=0.431  Sum_probs=31.2

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      .+..+|+|||+|=++-++++.|.+.|. +|.|+-++
T Consensus        15 ~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~   50 (167)
T d1npya1          15 NKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN   50 (167)
T ss_dssp             CTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeccc
Confidence            346789999999999999999999996 79999775

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.28  E-value=0.085  Score=43.77  Aligned_cols=34  Identities=21%  Similarity=0.400  Sum_probs=30.9

Q ss_pred             CCCeEEEECc-cHHHHHHHHHHHhCCCeEEEEecC
Q 010542           27 RSPSVIVIGA-GMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGa-GiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      .+.+|+|+|| |..|...+.+|.++|++|+++-++
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~   36 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRD   36 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcC
Confidence            4678999995 999999999999999999999874

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=92.26  E-value=0.13  Score=38.02  Aligned_cols=36  Identities=19%  Similarity=0.479  Sum_probs=32.3

Q ss_pred             CCCeEEEECcc-----------HHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           27 RSPSVIVIGAG-----------MAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        27 ~~~dv~IIGaG-----------iaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ...+|+|||+|           .++..|+..|++.|+++.++--++.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            46789999998           6899999999999999999998764

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.05  E-value=0.081  Score=35.93  Aligned_cols=33  Identities=21%  Similarity=0.171  Sum_probs=30.4

Q ss_pred             CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +.|.|||||-=|-+.+..-.+.|++|.+++...
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~   34 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDA   34 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            579999999999999999999999999999754

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=92.01  E-value=0.085  Score=40.79  Aligned_cols=31  Identities=32%  Similarity=0.484  Sum_probs=27.5

Q ss_pred             CeEEEEC-ccHHHHHHHHHHHhCCC--eEEEEec
Q 010542           29 PSVIVIG-AGMAGVAAARALHDASF--KVVLLES   59 (507)
Q Consensus        29 ~dv~IIG-aGiaGL~aA~~L~~~G~--~V~vlE~   59 (507)
                      .+|+||| +|-.|-++|+.|..+|.  ++.++|.
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            3799999 69999999999999985  7889885

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=91.68  E-value=0.082  Score=41.54  Aligned_cols=32  Identities=19%  Similarity=0.352  Sum_probs=28.4

Q ss_pred             CeEEEECccHHHHHHHHHHHhCC-CeEEEEecC
Q 010542           29 PSVIVIGAGMAGVAAARALHDAS-FKVVLLESR   60 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~   60 (507)
                      ++|.|||+|-.|-+-|..|.+.| ++|.+++++
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~   33 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRG   33 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSS
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCC
Confidence            57999999999999999988876 789998874

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=91.58  E-value=0.1  Score=41.02  Aligned_cols=32  Identities=16%  Similarity=0.259  Sum_probs=29.9

Q ss_pred             eEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      .|+|+|.|-.|...+..|.+.|.+|+|+|..+
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            49999999999999999999999999999854

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=91.25  E-value=0.15  Score=40.64  Aligned_cols=37  Identities=22%  Similarity=0.285  Sum_probs=31.5

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ..+.-.|+|+|+|..|+.++..+...|.+|++++.+.
T Consensus        28 ~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~   64 (168)
T d1uufa2          28 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE   64 (168)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCCCEEEEeccchHHHHHHHHhhcccccchhhccch
Confidence            3556789999999999999988888899988888743

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=91.25  E-value=0.11  Score=42.09  Aligned_cols=36  Identities=17%  Similarity=0.281  Sum_probs=31.2

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~   61 (507)
                      ...-.|+|+|+|..|+.++..+...|. +|.+++.++
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CCCCEEEEECCCccchhheeccccccccccccccccc
Confidence            345679999999999999999999997 799999854

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=91.15  E-value=0.11  Score=40.34  Aligned_cols=33  Identities=30%  Similarity=0.302  Sum_probs=27.3

Q ss_pred             CeEEEEC-ccHHHHHHHHHHHh-CC--CeEEEEecCC
Q 010542           29 PSVIVIG-AGMAGVAAARALHD-AS--FKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIG-aGiaGL~aA~~L~~-~G--~~V~vlE~~~   61 (507)
                      ++|+||| +|-.|-+.|+.|+. .+  .++.++|..+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            5899999 59999999999864 34  5899999754

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=90.63  E-value=0.18  Score=40.78  Aligned_cols=38  Identities=21%  Similarity=0.364  Sum_probs=32.9

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCCCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRDRV   63 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~~~   63 (507)
                      -+..+|+|||+|=+|-++++.|.+.|. +++|+.++...
T Consensus        16 l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~   54 (182)
T d1vi2a1          16 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEF   54 (182)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTT
T ss_pred             cCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHH
Confidence            356899999999999999999999986 79999986543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=90.62  E-value=0.13  Score=41.41  Aligned_cols=35  Identities=26%  Similarity=0.378  Sum_probs=30.2

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      .+.-.|+|+|+|..|+.++..++..|. +|.+.+.+
T Consensus        26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~   61 (174)
T d1jqba2          26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR   61 (174)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred             CCCCEEEEEcCCcchhhhhhhhhcccccccccccch
Confidence            455679999999999999999998896 79999874

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=90.50  E-value=0.094  Score=44.31  Aligned_cols=35  Identities=17%  Similarity=0.346  Sum_probs=30.7

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      -+.++|+|||+|-+|.-+|+.|++.+.+++++=+.
T Consensus        30 ~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~   64 (235)
T d1w4xa2          30 FSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRT   64 (235)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESS
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhhhccccccccc
Confidence            46789999999999999999999998887777654

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=90.38  E-value=0.13  Score=41.26  Aligned_cols=35  Identities=26%  Similarity=0.324  Sum_probs=31.7

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      .+...|+|+|+|=++-++++.|.+.+.+|.|+-|+
T Consensus        16 ~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~   50 (171)
T d1p77a1          16 RPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRT   50 (171)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEEECCcHHHHHHHHHHcccCceeeeccch
Confidence            45788999999999999999999888899999885

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.27  E-value=0.18  Score=40.09  Aligned_cols=35  Identities=20%  Similarity=0.225  Sum_probs=30.6

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      .+.-.|+|+|+|..|+.++..+...|.+|.+.+.+
T Consensus        26 ~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~   60 (168)
T d1rjwa2          26 KPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIG   60 (168)
T ss_dssp             CTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCCEEEEeecccchhhhhHHHhcCCCeEeccCCC
Confidence            45578999999999999999999999999988864

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.03  E-value=0.19  Score=41.23  Aligned_cols=37  Identities=27%  Similarity=0.270  Sum_probs=30.8

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD   61 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~   61 (507)
                      ....-+|+|+|+|..||.++..++..|. +|.+.+.++
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            3456789999999999999999988876 788888753

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=90.02  E-value=0.15  Score=44.77  Aligned_cols=35  Identities=29%  Similarity=0.416  Sum_probs=31.9

Q ss_pred             CCCeEEEECc-cHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGA-GMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGa-GiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      .+++|+|+|| |..|-..+..|.++|++|.++.++.
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~   37 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   37 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence            4678999998 9999999999999999999999854

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.83  E-value=0.16  Score=40.87  Aligned_cols=34  Identities=21%  Similarity=0.396  Sum_probs=29.9

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      -+..+|+|||+|-++-++++.|.+.| +|.|+-|+
T Consensus        16 ~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~   49 (177)
T d1nvta1          16 VKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRT   49 (177)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence            35689999999999999999998877 89999774

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=89.71  E-value=0.2  Score=39.44  Aligned_cols=35  Identities=29%  Similarity=0.484  Sum_probs=31.4

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      -....|+|||+|-.|-.+|.+|.+.|. +|+|+=++
T Consensus        22 l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          22 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             cccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            467889999999999999999999997 69998874

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=89.64  E-value=0.16  Score=44.87  Aligned_cols=34  Identities=18%  Similarity=0.284  Sum_probs=30.6

Q ss_pred             CCCeEEEECc-cHHHHHHHHHHHhCCCeEEEEecC
Q 010542           27 RSPSVIVIGA-GMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGa-GiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      ++.+|+|+|| |..|...+.+|.++|++|+++-++
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~   36 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRP   36 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            4567999997 999999999999999999999774

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=89.46  E-value=0.25  Score=39.56  Aligned_cols=37  Identities=16%  Similarity=0.291  Sum_probs=31.3

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD   61 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~   61 (507)
                      ....-.|+|+|+|..|+.++..+...|. +|.+.|.++
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDING   63 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence            3455689999999999999999999997 677888754

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.40  E-value=0.26  Score=39.60  Aligned_cols=36  Identities=14%  Similarity=0.307  Sum_probs=31.3

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCC-CeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~~   61 (507)
                      .+.-.|+|+|+|..||.+...++..| .+|.++|.++
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~   64 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK   64 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcH
Confidence            45567999999999999999999998 4899999854

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.00  E-value=0.14  Score=38.40  Aligned_cols=42  Identities=14%  Similarity=0.279  Sum_probs=31.4

Q ss_pred             HHHHHh-ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecC
Q 010542          247 VINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP  293 (507)
Q Consensus       247 l~~~l~-~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p  293 (507)
                      +.+.|. +|+++++|+.|+++..+  ++   +.+++.+.+|.||+|++
T Consensus        78 ~~~~l~~~GV~~~~~~~v~~~~~~--~v---~~~~~~i~~D~vi~a~G  120 (122)
T d1xhca2          78 IKDMLEETGVKFFLNSELLEANEE--GV---LTNSGFIEGKVKICAIG  120 (122)
T ss_dssp             HHHHHHHTTEEEECSCCEEEECSS--EE---EETTEEEECSCEEEECC
T ss_pred             HHHHHHHCCcEEEeCCEEEEEeCC--EE---EeCCCEEECCEEEEEEE
Confidence            334444 38999999999988543  22   34677999999999986

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=88.98  E-value=0.32  Score=36.26  Aligned_cols=37  Identities=27%  Similarity=0.574  Sum_probs=32.6

Q ss_pred             CCCCeEEEECccH-----------HHHHHHHHHHhCCCeEEEEecCCC
Q 010542           26 ARSPSVIVIGAGM-----------AGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        26 ~~~~dv~IIGaGi-----------aGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      ....+|+|||+|.           ++..|+..|++.|+++.++--++.
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            4568999999984           899999999999999999998764

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.76  E-value=0.27  Score=44.55  Aligned_cols=36  Identities=17%  Similarity=0.290  Sum_probs=32.4

Q ss_pred             CCCCCeEEEEC-ccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           25 QARSPSVIVIG-AGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        25 ~~~~~dv~IIG-aGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      +++.++|+|.| +|.-|...+.+|.++|++|++++..
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~   48 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWK   48 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence            45688999998 7999999999999999999999864

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=87.87  E-value=0.35  Score=39.36  Aligned_cols=35  Identities=23%  Similarity=0.386  Sum_probs=31.4

Q ss_pred             CCCCeEEEEC-ccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           26 ARSPSVIVIG-AGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIG-aGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      -+.+.|+|.| +|-.|..+|..|+++|.+|+++.++
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~   56 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRK   56 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccc
Confidence            3568899999 5999999999999999999999885

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=87.81  E-value=0.18  Score=37.97  Aligned_cols=40  Identities=25%  Similarity=0.270  Sum_probs=30.4

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhC-CCe-EEEEecCCCCCce
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDA-SFK-VVLLESRDRVGGR   66 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~-G~~-V~vlE~~~~~GG~   66 (507)
                      +++.|+|+|||-+|-+.+.+|.+. |++ |..+|-+...-|+
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~   43 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGR   43 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTC
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCC
Confidence            457899999999999888877644 676 5688876655443

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=87.65  E-value=0.21  Score=42.62  Aligned_cols=33  Identities=30%  Similarity=0.526  Sum_probs=30.3

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEec
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLES   59 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~   59 (507)
                      +..+|+|||+|-.|..+|..|++.|. +++|+|.
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~   62 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDF   62 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            35789999999999999999999997 7999986

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.28  E-value=0.55  Score=39.27  Aligned_cols=36  Identities=19%  Similarity=0.367  Sum_probs=29.9

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhC--------------------CC-eEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDA--------------------SF-KVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~--------------------G~-~V~vlE~~~   61 (507)
                      -...+|+|||+|-.+|=||..|.+.                    |. +|.|+-+..
T Consensus        37 ~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg   93 (225)
T d1cjca1          37 LSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG   93 (225)
T ss_dssp             TTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             ccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence            3468999999999999999999983                    54 788888754

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.13  E-value=0.32  Score=38.12  Aligned_cols=35  Identities=26%  Similarity=0.347  Sum_probs=32.4

Q ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ..+.|+|||=|..|-.+|..|+..|.+|+|.|..+
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            46789999999999999999999999999999854

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=86.52  E-value=0.35  Score=38.65  Aligned_cols=36  Identities=19%  Similarity=0.280  Sum_probs=29.0

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCCe-EEEEecC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASFK-VVLLESR   60 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~-V~vlE~~   60 (507)
                      ..+.-+|+|+|+|..|++++..+...|.+ |.+.+.+
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~   62 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIV   62 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESC
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccH
Confidence            45677899999999999999988888875 5566653

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=86.21  E-value=0.26  Score=42.61  Aligned_cols=34  Identities=21%  Similarity=0.420  Sum_probs=30.3

Q ss_pred             CCeEEEECc-cHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           28 SPSVIVIGA-GMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGa-GiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      .++|+|.|| |..|-..+.+|.++|++|..+.+++
T Consensus         1 ~MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           1 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            367999998 9999999999999999999987643

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=86.02  E-value=0.53  Score=37.43  Aligned_cols=37  Identities=22%  Similarity=0.381  Sum_probs=30.6

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD   61 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~   61 (507)
                      ..+.-.|+|+|+|..|++++..++..|. +|.+++.++
T Consensus        26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~   63 (175)
T d1cdoa2          26 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP   63 (175)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCCCEEEEEecCCccchHHHHHHHHhhchheeecchH
Confidence            3456679999999999999999999875 788888754

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.90  E-value=0.22  Score=39.00  Aligned_cols=25  Identities=24%  Similarity=0.328  Sum_probs=21.6

Q ss_pred             CCCeEEEECc-cHHHHHHHHHHHhCC
Q 010542           27 RSPSVIVIGA-GMAGVAAARALHDAS   51 (507)
Q Consensus        27 ~~~dv~IIGa-GiaGL~aA~~L~~~G   51 (507)
                      +..+|+|||| |..|-+.|+.|+..+
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~   27 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGS   27 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTT
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHH
Confidence            4579999996 999999999998753

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.66  E-value=0.8  Score=37.91  Aligned_cols=22  Identities=32%  Similarity=0.489  Sum_probs=20.1

Q ss_pred             CCCeEEEECccHHHHHHHHHHH
Q 010542           27 RSPSVIVIGAGMAGVAAARALH   48 (507)
Q Consensus        27 ~~~dv~IIGaGiaGL~aA~~L~   48 (507)
                      ...+|+|||+|-.+|=||..|+
T Consensus        38 ~gk~VvVIGgGNvAlD~AR~ll   59 (216)
T d1lqta1          38 SGARAVVIGNGNVALDVARILL   59 (216)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHH
T ss_pred             cCceEEEECCCchhHhhhhhhc
Confidence            4679999999999999999887

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=84.87  E-value=0.28  Score=38.33  Aligned_cols=26  Identities=23%  Similarity=0.250  Sum_probs=22.3

Q ss_pred             CCCCeEEEECc-cHHHHHHHHHHHhCC
Q 010542           26 ARSPSVIVIGA-GMAGVAAARALHDAS   51 (507)
Q Consensus        26 ~~~~dv~IIGa-GiaGL~aA~~L~~~G   51 (507)
                      ++.++|.|||| |..|-+.|+.|+..+
T Consensus         2 ~~p~KV~IiGA~G~VG~~~a~~l~~~~   28 (154)
T d1y7ta1           2 KAPVRVAVTGAAGQIGYSLLFRIAAGE   28 (154)
T ss_dssp             CCCEEEEESSTTSHHHHHHHHHHHTTT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcc
Confidence            34569999997 999999999999864

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=84.83  E-value=0.52  Score=37.59  Aligned_cols=37  Identities=16%  Similarity=0.254  Sum_probs=31.0

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD   61 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~   61 (507)
                      ..+.-.|+|+|+|..||.++..++..|. +|.+.+.++
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            3456679999999999999999999886 788888743

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=83.89  E-value=0.43  Score=37.19  Aligned_cols=36  Identities=19%  Similarity=0.284  Sum_probs=33.2

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      -..+.++|+|=|.-|-.+|.+|+..|.+|+|.|..+
T Consensus        21 laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          21 ISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             ecCCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            456889999999999999999999999999999965

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=83.35  E-value=0.54  Score=37.32  Aligned_cols=36  Identities=22%  Similarity=0.325  Sum_probs=29.5

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~   61 (507)
                      .+.-.|+|+|+|..|+.++..++..|. .|++.+.++
T Consensus        31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            345679999999999999999988775 678888754

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=83.26  E-value=0.72  Score=37.64  Aligned_cols=35  Identities=20%  Similarity=0.308  Sum_probs=31.9

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      -+...|+|-|-|-.|..+|.+|.+.|.+|++.|.+
T Consensus        25 L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d   59 (201)
T d1c1da1          25 LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTD   59 (201)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecch
Confidence            35688999999999999999999999999998874

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=83.16  E-value=0.94  Score=31.35  Aligned_cols=32  Identities=19%  Similarity=0.121  Sum_probs=26.8

Q ss_pred             CeEEEECccHHHHHH-HHHHHhCCCeEEEEecC
Q 010542           29 PSVIVIGAGMAGVAA-ARALHDASFKVVLLESR   60 (507)
Q Consensus        29 ~dv~IIGaGiaGL~a-A~~L~~~G~~V~vlE~~   60 (507)
                      ++|-+||-|=+|+++ |..|.++|++|.--|..
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~   34 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIE   34 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            578888888888866 88888999999998874

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=83.00  E-value=0.88  Score=36.12  Aligned_cols=37  Identities=14%  Similarity=0.272  Sum_probs=30.8

Q ss_pred             CCCCCeEEEECccHHHHHHHHHHHhCC-CeEEEEecCC
Q 010542           25 QARSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRD   61 (507)
Q Consensus        25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~~   61 (507)
                      ..+.-.|+|+|+|-.|++++..++..| .+|.+.+.++
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            345566999999999999999999997 4888888754

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=82.55  E-value=0.52  Score=38.35  Aligned_cols=35  Identities=26%  Similarity=0.360  Sum_probs=30.5

Q ss_pred             CeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCC
Q 010542           29 PSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRV   63 (507)
Q Consensus        29 ~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~   63 (507)
                      ++|+|||||.+|+.+|..|++.  +.+|+|+|+++.+
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence            5799999999999999999987  4589999996643

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=82.40  E-value=0.77  Score=41.13  Aligned_cols=34  Identities=21%  Similarity=0.302  Sum_probs=30.6

Q ss_pred             CCCeEEEECc-cHHHHHHHHHHHhCCCeEEEEecC
Q 010542           27 RSPSVIVIGA-GMAGVAAARALHDASFKVVLLESR   60 (507)
Q Consensus        27 ~~~dv~IIGa-GiaGL~aA~~L~~~G~~V~vlE~~   60 (507)
                      +++.|+|+|| |..|-..+..|.++|++|.++=++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~   36 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHS   36 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECC
Confidence            4678999997 999999999999999999998663

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=82.37  E-value=0.84  Score=35.99  Aligned_cols=36  Identities=22%  Similarity=0.410  Sum_probs=30.1

Q ss_pred             CCCCeEEEECc-cHHHHHHHHHHHhCC-CeEEEEecCC
Q 010542           26 ARSPSVIVIGA-GMAGVAAARALHDAS-FKVVLLESRD   61 (507)
Q Consensus        26 ~~~~dv~IIGa-GiaGL~aA~~L~~~G-~~V~vlE~~~   61 (507)
                      .+.-+|+|+|+ |..|+.++..+...| .+|.+.+.++
T Consensus        26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             CCCCEEEEEeccccceeeeeecccccccccccccccch
Confidence            45567999995 999999999998888 4899999753

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=82.34  E-value=1.1  Score=35.94  Aligned_cols=37  Identities=19%  Similarity=0.266  Sum_probs=33.3

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR   62 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~   62 (507)
                      -....|.|||.|..|-..|..|...|.+|.++++...
T Consensus        40 l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~   76 (181)
T d1qp8a1          40 IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK   76 (181)
T ss_dssp             CTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ccCceEEEeccccccccceeeeecccccccccccccc
Confidence            4568899999999999999999999999999998654

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=82.18  E-value=0.78  Score=36.38  Aligned_cols=34  Identities=26%  Similarity=0.313  Sum_probs=25.0

Q ss_pred             CCeEEEECccHHHHHHHHH--HHhC----CCeEEEEecCC
Q 010542           28 SPSVIVIGAGMAGVAAARA--LHDA----SFKVVLLESRD   61 (507)
Q Consensus        28 ~~dv~IIGaGiaGL~aA~~--L~~~----G~~V~vlE~~~   61 (507)
                      .++|+|||||-.|.+.+..  |++.    +.++.++|.+.
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~   41 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDE   41 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCH
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCc
Confidence            5799999999999776542  3332    35899999853

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=81.94  E-value=0.77  Score=39.02  Aligned_cols=33  Identities=27%  Similarity=0.449  Sum_probs=25.7

Q ss_pred             CeE-EEECc-cHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSV-IVIGA-GMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv-~IIGa-GiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      ++| +|.|| +=-|+++|..|+++|.+|.+..+++
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            345 44464 4578999999999999999998754

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.87  E-value=0.51  Score=39.41  Aligned_cols=32  Identities=34%  Similarity=0.453  Sum_probs=27.8

Q ss_pred             CCCeEEEECc-cHHHHHHHHHHHhCCCeEEEEe
Q 010542           27 RSPSVIVIGA-GMAGVAAARALHDASFKVVLLE   58 (507)
Q Consensus        27 ~~~dv~IIGa-GiaGL~aA~~L~~~G~~V~vlE   58 (507)
                      +++.|+|.|| |..|...+..|.++|++|.|+.
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~   34 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKG   34 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEE
Confidence            4688999995 9999999999999998876654

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=81.15  E-value=0.91  Score=40.59  Aligned_cols=35  Identities=20%  Similarity=0.142  Sum_probs=31.3

Q ss_pred             CCCeEEEEC-ccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           27 RSPSVIVIG-AGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        27 ~~~dv~IIG-aGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +.++|+|.| +|..|...+..|.++|++|.++.+..
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~   42 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA   42 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            358899999 68999999999999999999999853

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=81.08  E-value=1  Score=39.26  Aligned_cols=33  Identities=12%  Similarity=0.150  Sum_probs=26.5

Q ss_pred             CeEEEEC-ccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542           29 PSVIVIG-AGMAGVAAARALHDASFKVVLLESRD   61 (507)
Q Consensus        29 ~dv~IIG-aGiaGL~aA~~L~~~G~~V~vlE~~~   61 (507)
                      +.++|-| +|=-|.++|..|+++|.+|++..++.
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            4455555 56779999999999999999999853

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.01  E-value=0.54  Score=41.50  Aligned_cols=41  Identities=24%  Similarity=0.273  Sum_probs=30.7

Q ss_pred             cCCCCceEEeeccccC-----cCCchhhHHHHHHHHHHHHHHHHHH
Q 010542          439 RIPVDNLFFAGEATSM-----SYPGSVHGAFSTGLMAAEDCRMRVL  479 (507)
Q Consensus       439 ~~~~~~l~~aG~~~~~-----~~~g~~egA~~SG~~aA~~i~~~l~  479 (507)
                      .+..+|+|++|+....     +....+-+++.||++||+.|++.|.
T Consensus       265 ~~~~pgl~~~Gdaa~~v~g~~r~G~t~g~m~~sG~~aA~~i~~~l~  310 (311)
T d2gjca1         265 YAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFA  310 (311)
T ss_dssp             CTTSTTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEccCCEEEEeeecCcccCcCCccHHHHHHHHHHHHHHHHHHHHhc
Confidence            4556899999997542     1212566688999999999998875

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=80.63  E-value=0.9  Score=37.47  Aligned_cols=35  Identities=29%  Similarity=0.417  Sum_probs=29.8

Q ss_pred             CCCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542           26 ARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR   60 (507)
Q Consensus        26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~   60 (507)
                      -...+|+|.|||-+|+..|..|.+.|. ++.++|+.
T Consensus        24 l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          24 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             hhhcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            456889999999999999999998875 67777774

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=80.31  E-value=0.5  Score=42.74  Aligned_cols=50  Identities=20%  Similarity=0.245  Sum_probs=35.7

Q ss_pred             HHHHHhcc-CCcccCceeEEEEeeCCc---EEEEEc--CC-----cEEEcCEEEEecCchh
Q 010542          247 VINTLAKG-LDIRLGHRVTKITRHYIG---VKVTVE--GG-----KTFVADAVVVAVPLGV  296 (507)
Q Consensus       247 l~~~l~~g-~~i~~~~~V~~I~~~~~~---v~v~~~--~g-----~~~~ad~VI~a~p~~~  296 (507)
                      +..+...| ++|+++++|++|..++++   +.|+..  ++     +++.||.||+|++.-.
T Consensus       225 l~~a~~~gn~~i~~~t~V~~I~~~~~g~~~v~v~~~~~~~~~~~~~~i~Ak~VVLaAGai~  285 (367)
T d1n4wa1         225 LAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLG  285 (367)
T ss_dssp             HHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHH
T ss_pred             hHHHHhCCCeEEECCCEEEEEEEcCCCCEEEEEEEECCCCcceeEEEEecCEEEEecchhc
Confidence            45566665 799999999999988664   234332  22     2678999999997543

>d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: D-Alanine ligase N-terminal domain
domain: D-Ala-D-Ala ligase, N-domain
species: Escherichia coli, gene ddlB [TaxId: 562]

Probab=80.10  E-value=3.4  Score=28.82  Aligned_cols=71  Identities=17%  Similarity=0.239  Sum_probs=47.4

Q ss_pred             CCeEEEECccH---------HHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCC-CCchHHHH
Q 010542           28 SPSVIVIGAGM---------AGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQ-ENPLAPVI   97 (507)
Q Consensus        28 ~~dv~IIGaGi---------aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~-~~~~~~l~   97 (507)
                      +.+|+||-||.         +|.+..-.|.+.|++|..+|-.+..-     .......+|.-.-.+|+... +..+..++
T Consensus         2 ~~kI~vl~GG~S~E~~iSl~Sa~~v~~~L~~~~~~v~~i~~~~~~~-----~~~~~~~~d~vF~~lHG~~GEdG~iQ~~l   76 (96)
T d1iowa1           2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDV-----TQLKSMGFQKVFIALHGRGGEDGTLQGML   76 (96)
T ss_dssp             CCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCG-----GGTTTTTEEEEEECCCSTTTSSSHHHHHH
T ss_pred             CceEEEEeCcCchhhHhHHhhHHHHHHHHHHcCeeEeeecCccccc-----hhhhccCceeEEEeccCcchhccHHHHHH
Confidence            45799999996         46777778888999999999865321     11222233432233444433 44788999


Q ss_pred             HhcCCC
Q 010542           98 SRLGLP  103 (507)
Q Consensus        98 ~~lg~~  103 (507)
                      +.++++
T Consensus        77 e~l~IP   82 (96)
T d1iowa1          77 ELMGLP   82 (96)
T ss_dssp             HHHTCC
T ss_pred             HHcCCC
Confidence            999997